Citrus Sinensis ID: 038969

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
Protein Sequence
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKNN
Secondary Structure (PSIPRED)
cEEEccccccccccccccccEEEEccccccccccccEEcccccccccccccccEEEEccccccccEEEcccccccEEEEEEEEEEcccccccccccEEEEEcccEEEEEEcccccccEEEEEEEEcccccEEEEEEEcccccccccEEEcccccccccccccccHHHEcccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHcccccccccccEEEEEcccccccccEEEEEEccccccccccEEEEEEEEccccccccccccccccEEEEEccccccccEEEEEEccccccccHHHHcHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccHHHccccccEEEccccccccccccHHHHHHHccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccEEEEccccEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEccccccEEEEcccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccEEEccccHccccccccccHHHcccccccccccEEcccccccccEEEEEccccccEEEEEEEEEEccccccccccEEEEEEccccEEEEEEcccccEEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccccccEEEHEHcccccccEEEccccccccEEEccccccccccccccccccccccccccHHHHHHcccccccccccEEEEEccccccccEEEEEEEHHHHHcccccEEEEEEEEccccccccccccHcccccEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccEEEEEEEccccccccccHHHHHHHcccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccHHHHcccccEEEEEcccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcEccccccEEEEEEEcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHcHHcEEEEHcccccccc
Coil and Loop (DISEMBL)
fisidcgiphdssytdkitginyvsdstfiDTGVINNisseyssnktlERQFLNvrsfpegirncytlkpssgdVKFLIRARFmygnydgqniiPSFSLLLEadvwdsvnlkdasgivtkeiihapkkNYMYVCLVntgsgtpfisalelrplknstyetqsgslllwdvgsttseairypddvydriwspyrslrwesitrrsdstffendwqlpLTIMRTavrpanasiNSLSFYwktstpesQYYIFLHFAevegrqenqtremsiysngklwygpfvpytfFTTTLVsiypskgseridfsinktenstlppilnaEEIYlakefpssltsqqDVDAIMSIKKKYgvkknwqgdpcapkvylwqglncsydgnelpriislnlsssgisgEIITYIFSLTSLqaldlsnnsltgsvpefLSELHFLRVLNLtgnnlegsvpaGLLERAKNGllslsvdgnpklchtascnkrqnnkyivPVAASVVSLSVLLTALAILWNLKrrkqggrkkgswelknrkfsYSDVAKITNNFEKvigkggfgtvyhgyleFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLttlvgycdedtnmGLIYEFMAKGnleehlsgantlTWEARLRIATEAaqgshsafdqgccphicesssssnphknIVKLITFSIIKNN
Flexible Loop (DISEMBL)
fisidcgiphdssytdKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRncytlkpssgdVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTtseairypddvydrIWSPYRslrwesitrrsdstffendwqLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFsinktenstlppILNAEEIYLAKEfpssltsqqdVDAIMSIKKKYgvkknwqgdpCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAIlwnlkrrkqggrkkgswelknrkfsysdVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICesssssnphknivKLITFSIIKNN
Low Complexity Region (SEG)
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRiislnlsssgisgeiiTYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPvaasvvslsvlltalaILWNLkrrkqggrkkgSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKNN
Disordered region (IsUnstruct)
***IDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGR****TREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKT*NSTLPPILNAEEIYLAKEFPSSLT*QQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQ****KGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAA*****AFDQGCC****************************
Disordered Region (DISOPRED)
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDG********************PVAASVVSLSVLLTALAILWNLK*****************KFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKM*S********Q**AEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN*
Disordered Region (DISEMBL)
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRR*********WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEA********DQGCCPHICESSSSSNPHKNIVKLITFSIIKNN
Disordered Region (DISPRO)
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQG***KGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKNN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	678	2.2.26 [Sep-21-2011]
O65924	881	Putative leucine-rich rep	no	no	0.952	0.733	0.498	1e-180
O64556	877	Putative leucine-rich rep	no	no	0.949	0.734	0.492	1e-169
C0LGD6	852	Probable LRR receptor-lik	no	no	0.976	0.776	0.475	1e-168
C0LGD9	871	Probable LRR receptor-lik	no	no	0.955	0.743	0.445	1e-153
O64483	876	Senescence-induced recept	no	no	0.949	0.735	0.460	1e-153
Q9ZQR3	868	Leucine-rich repeat recep	no	no	0.939	0.733	0.445	1e-150
Q9FZB8	871	Probable LRR receptor-lik	no	no	0.935	0.727	0.438	1e-149
C0LGG3	885	Probable LRR receptor-lik	no	no	0.935	0.716	0.435	1e-148
O81069	884	Probable leucine-rich rep	no	no	0.948	0.727	0.433	1e-146
C0LGG6	876	Probable LRR receptor-lik	no	no	0.927	0.718	0.443	1e-146

>sp|O65924|Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1

 Score =  633 bits (1632), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 337/676 (49%), Positives = 443/676 (65%), Gaps = 30/676 (4%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           F+SIDCGIP DSSY D+ T I YVSD+ F+++G I++I  E+ ++ +LE+QF NVRSFPE
Sbjct: 31  FVSIDCGIPEDSSYNDETTDIKYVSDAAFVESGTIHSIDPEFQTS-SLEKQFQNVRSFPE 89

Query: 61  GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           G RNCY +KP  G   K+LIR RFMYGNYD     P F L L  ++WDSV + +A+ IVT
Sbjct: 90  GNRNCYDVKPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGFNIWDSVTIDNATTIVT 149

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
           KEIIH  + ++++VCLV+   GTPF+SALE+R LK++TYET   SL+L   WD+G   + 
Sbjct: 150 KEIIHTLRSDHVHVCLVDKNRGTPFLSALEIRLLKSNTYETPYDSLILFKRWDLGGLGAL 209

Query: 177 AIRYPDDVYDRIWSPYRSLRW----ESITRRSDSTFFENDWQLPLTIMRTAVRPANASIN 232
            +RY DDV+DRIW P R  ++     S+T  S++      +Q    +M TA  P + S  
Sbjct: 210 PVRYKDDVFDRIWIPLRFPKYTIFNASLTIDSNNN---EGFQPARFVMNTATSPEDLS-Q 265

Query: 233 SLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGK-LWYGPFVPYTFFTTTLV 291
            + F W+   P  +Y++++HFAEV     N+TRE  +  N K +    F P   +T TL 
Sbjct: 266 DIIFSWEPKDPTWKYFVYMHFAEVVELPSNETREFKVLLNEKEINMSSFSPRYLYTDTLF 325

Query: 292 SIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGV 351
              P  G  +++F + +T  STLPPI+NA E Y   EF  S T QQDVDAIM IK KYGV
Sbjct: 326 VQNPVSGP-KLEFRLQQTPRSTLPPIINAIETYRVNEFLQSPTDQQDVDAIMRIKSKYGV 384

Query: 352 KKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDL 411
           KK+W GDPCAP  Y W+ +NCSY  NE PRIIS+NLSSSG++GEI     +LT L  LDL
Sbjct: 385 KKSWLGDPCAPVKYPWKDINCSYVDNESPRIISVNLSSSGLTGEIDAAFSNLTLLHILDL 444

Query: 412 SNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTA 471
           SNNSLTG +P+FL  LH L  LNL GN L G++P  LLER+   L+ L +DGNP LC +A
Sbjct: 445 SNNSLTGKIPDFLGNLHNLTELNLEGNKLSGAIPVKLLERSNKKLILLRIDGNPDLCVSA 504

Query: 472 SCN----KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQ----GGRKKGSWELKNR 523
           SC     K + N YI+P+ ASVV +  L+ A+A+    K+R +    GG + G  +   R
Sbjct: 505 SCQISDEKTKKNVYIIPLVASVVGVLGLVLAIALFLLYKKRHRRGGSGGVRAGPLDTTKR 564

Query: 524 KFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY 583
            + YS+V K+TNNFE+V+G+GGFG VYHG L  N  QVAVK+LS SS QGYK+F+AEV+ 
Sbjct: 565 YYKYSEVVKVTNNFERVLGQGGFGKVYHGVL--NDDQVAVKILSESSAQGYKEFRAEVEL 622

Query: 584 I--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQ 639
           +  VHHKNLT L+GYC E   M LIYEFMA G L ++LSG  +  L+WE RL+I+ +AAQ
Sbjct: 623 LLRVHHKNLTALIGYCHEGKKMALIYEFMANGTLGDYLSGEKSYVLSWEERLQISLDAAQ 682

Query: 640 GSHSAFDQGCCPHICE 655
           G       GC P I +
Sbjct: 683 GLE-YLHNGCKPPIVQ 697

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O64556|Y2923_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana GN=At2g19230 PE=2 SV=3

 Score =  595 bits (1533), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 330/670 (49%), Positives = 430/670 (64%), Gaps = 26/670 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           F+SIDCGIP DSSY D+ T I Y+SD+ F+++G I++I S++   K LE+QF  VRSFPE
Sbjct: 30  FVSIDCGIPEDSSYYDEKTDIKYISDAAFVESGTIHSIDSKFQ-KKNLEKQFQKVRSFPE 88

Query: 61  GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           G +NCY ++P  G   K+LIR RFMYGNYD     P F L L  ++WDSV L++++ IVT
Sbjct: 89  GKKNCYDVQPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGVNLWDSVTLENSTTIVT 148

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
           KEII+  + + ++VCLV+   GTPF+S LELR LKN+ YET S SL+L   WD+G+T   
Sbjct: 149 KEIIYTLRSDKVHVCLVDKERGTPFLSVLELRLLKNNIYETASDSLMLYRRWDLGATGDL 208

Query: 177 AIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFE----NDWQLPLTIMRTAVRPANASIN 232
             RY DD++DR W P   L + +    + S   +    N +  P  +M TAV P N+SI 
Sbjct: 209 PARYKDDIFDRFWMP---LMFPNFLILNTSLMIDPTSSNGFLPPSVVMSTAVAPMNSSIE 265

Query: 233 SLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLW--YGPFVPYTFFTTTL 290
            +  YW+   P  ++YI++HFAEVE    N+TRE S++ N +       F P   +T TL
Sbjct: 266 QIMVYWEPRDPNWKFYIYIHFAEVEKLPSNETREFSVFLNKEQIDTTSVFRPSYLYTDTL 325

Query: 291 VSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYG 350
               P  G   ++F + +   ST PPI+NA E Y   EF    T Q DVDAIM IK KY 
Sbjct: 326 YVQNPVSGP-FLEFVLRQGVKSTRPPIMNAIETYRTNEFLDLPTDQNDVDAIMKIKTKYK 384

Query: 351 VKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALD 410
           VKKNW GDPCAP  Y WQG+NCSY  N  PRIIS+NLS SG++G+I     +LT LQ LD
Sbjct: 385 VKKNWLGDPCAPFGYPWQGINCSYTANNPPRIISVNLSFSGLTGQIDPVFITLTPLQKLD 444

Query: 411 LSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHT 470
           LSNN LTG+VP+FL+ L  L  LNL  N L G +P  LLER+K+G LSL V GNP LC +
Sbjct: 445 LSNNRLTGTVPDFLANLPDLTELNLEENKLTGILPEKLLERSKDGSLSLRVGGNPDLCVS 504

Query: 471 ASC--NKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWELKNRKFSYS 528
            SC   K +  +YI+P  ASV  L  LL AL   W  K+R+Q   K G  + K R + YS
Sbjct: 505 DSCRNKKTERKEYIIPSVASVTGLFFLLLALISFWQFKKRQQ-SVKTGPLDTK-RYYKYS 562

Query: 529 DVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH 586
           ++ +ITNNFE+V+G+GGFG VY+G L   G QVA+KMLS SS QGYK+F+AEV+ +  VH
Sbjct: 563 EIVEITNNFERVLGQGGFGKVYYGVLR--GEQVAIKMLSKSSAQGYKEFRAEVELLLRVH 620

Query: 587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQGSHSA 644
           HKNL  L+GYC E   M LIYE++  G L ++LSG N+  L+WE RL+I+ +AAQG    
Sbjct: 621 HKNLIALIGYCHEGDQMALIYEYIGNGTLGDYLSGKNSSILSWEERLQISLDAAQGLE-Y 679

Query: 645 FDQGCCPHIC 654
              GC P I 
Sbjct: 680 LHNGCKPPIV 689

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1

 Score =  593 bits (1529), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 331/696 (47%), Positives = 430/696 (61%), Gaps = 34/696 (4%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCGIP  SSY D  TGINYVSDS+F++TGV  +I        T +RQ  N+RSFPE
Sbjct: 31  FISIDCGIPSGSSYKDDTTGINYVSDSSFVETGVSKSIPF------TAQRQLQNLRSFPE 84

Query: 61  GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           G RNCYTL P  G   K+LIRA FMYGNYDG+N  P F L L  ++WD+V L + S IV+
Sbjct: 85  GSRNCYTLIPIQGKGKKYLIRASFMYGNYDGENGSPEFDLFLGGNIWDTVLLSNGSSIVS 144

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPL--KNSTYETQSGSLLL---WDVGSTT 174
           KE+++  +   ++VCL N G GTPFIS LELR L   N+TY++ +G+L     WD+ S  
Sbjct: 145 KEVVYLSQSENIFVCLGNKGKGTPFISTLELRFLGNDNTTYDSPNGALFFSRRWDLRSLM 204

Query: 175 SEAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSL 234
              +RY DDVYDRIW P        I      T   N + L   +M TA+ P N +   +
Sbjct: 205 GSPVRYDDDVYDRIWIPRNFGYCREINTSLPVTSDNNSYSLSSLVMSTAMTPINTT-RPI 263

Query: 235 SFYWKTSTPESQYYIFLHFAEVE--GRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVS 292
           +   + S P  +Y++++HFAEVE    + NQTRE  I  NG      F P    T T   
Sbjct: 264 TMTLENSDPNVRYFVYMHFAEVEDLSLKPNQTREFDISINGVTVAAGFSPKYLQTNTFF- 322

Query: 293 IYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVK 352
           + P   S +I FS+ +T  STLPPI+NA EIY+A  F  SLT+Q+D DA+ S+K  Y VK
Sbjct: 323 LNPESQS-KIAFSLVRTPKSTLPPIVNALEIYVANSFSQSLTNQEDGDAVTSLKTSYKVK 381

Query: 353 KNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLS 412
           KNW GDPC P  Y+W+GLNCSYD    PRI SLNLSSSG++G I +   +LT +Q LDLS
Sbjct: 382 KNWHGDPCLPNDYIWEGLNCSYDSLTPPRITSLNLSSSGLTGHISSSFSNLTMIQELDLS 441

Query: 413 NNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTAS 472
           NN LTG +PEFLS+L FLRVLNL  N L GSVP+ LLER+  G  SL +  NP LC   S
Sbjct: 442 NNGLTGDIPEFLSKLKFLRVLNLENNTLTGSVPSELLERSNTGSFSLRLGENPGLCTEIS 501

Query: 473 CNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWELKNRK------FS 526
           C K  + K ++P+ AS  +L +LL    + W ++ R+              K      F+
Sbjct: 502 CRKSNSKKLVIPLVASFAALFILLLLSGVFWRIRNRRNKSVNSAPQTSPMAKSENKLLFT 561

Query: 527 YSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-- 584
           ++DV K+TNNF +V+GKGGFGTVYHG+  ++  QVAVK+LS +S QG+K+F++EV+ +  
Sbjct: 562 FADVIKMTNNFGQVLGKGGFGTVYHGF--YDNLQVAVKLLSETSAQGFKEFRSEVEVLVR 619

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSH 642
           VHH NLT L+GY  E   MGLIYEFMA GN+ +HL+G   +TL+W  RL+IA +AAQG  
Sbjct: 620 VHHVNLTALIGYFHEGDQMGLIYEFMANGNMADHLAGKYQHTLSWRQRLQIALDAAQGLE 679

Query: 643 SAFDQGCCPHICESSSSSN----PHKNIVKLITFSI 674
                GC P I      ++      KN  KL  F +
Sbjct: 680 -YLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGL 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD9|Y1756_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1

 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 303/680 (44%), Positives = 428/680 (62%), Gaps = 32/680 (4%)

Query: 1   FISIDCGIPHDSS-YTDKITGINYVSDSTFIDTGV---INNISS-EYSSNKTLERQFLNV 55
           FIS+DCG+  D S YT+ +T + + SD+ FI +G    I N+   EY    T+      +
Sbjct: 30  FISLDCGLQADESPYTEPLTKLTFTSDADFIKSGKSGKIQNVPGMEYIKPYTV------L 83

Query: 56  RSFPEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDAS 115
           R FP+G+RNCYTL    G   +LI A F YGNYD  N  P F L L  ++W +V+L+   
Sbjct: 84  RYFPDGVRNCYTLIVIQG-TNYLIVAMFTYGNYDNLNTHPKFDLYLGPNIWTTVDLQRNV 142

Query: 116 GIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL-LLWDVGSTT 174
                EIIH P+   + +CLV TG+ TP ISALELRPL+N+TY  QSGSL  L+ V  T 
Sbjct: 143 NGTRAEIIHIPRSTSLQICLVKTGTTTPLISALELRPLRNNTYIPQSGSLKTLFRVHLTD 202

Query: 175 S-EAIRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASIN 232
           S E +RYP+DV+DR+WSP+    W  + T  + +T  +N + +P  ++ TA  PAN S +
Sbjct: 203 SKETVRYPEDVHDRLWSPFFMPEWRLLRTSLTVNTSDDNGYDIPEDVVVTAATPANVS-S 261

Query: 233 SLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVS 292
            L+  W   TP+   Y +LH AE++  +EN TRE +I +   + YGP  P  F   TL +
Sbjct: 262 PLTISWNLETPDDLVYAYLHVAEIQSLRENDTREFNISAGQDVNYGPVSPDEFLVGTLFN 321

Query: 293 IYPSKGS-ERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGV 351
             P K         + KT  STLPP+LNA E ++  EFP S T+  DV AI SI+  YG+
Sbjct: 322 TSPVKCEGGTCHLQLIKTPKSTLPPLLNAIEAFITVEFPQSETNANDVLAIKSIETSYGL 381

Query: 352 KK-NWQGDPCAPKVYLWQGLNCSY-DGNELPRIISLNLSSSGISGEIITYIFSLTSLQAL 409
            + +WQGDPC P+  LW GL C Y + +  PRI SL+LSSS ++G I+  I +LT L+ L
Sbjct: 382 SRISWQGDPCVPQQLLWDGLTCEYTNMSTPPRIHSLDLSSSELTGIIVPEIQNLTELKKL 441

Query: 410 DLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
           D SNN+LTG VPEFL+++  L V+NL+GNNL GSVP  LL + KNG L L++ GNP LC 
Sbjct: 442 DFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKVKNG-LKLNIQGNPNLCF 500

Query: 470 TASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRK-----KGSWELKNRK 524
           ++SCNK++N+  ++PV AS+ SL+ ++  +A+L+   +R+   RK     + S E   ++
Sbjct: 501 SSSCNKKKNS-IMLPVVASLASLAAIIAMIALLFVCIKRRSSSRKGPSPSQQSIETIKKR 559

Query: 525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGT-QVAVKMLSASSVQGYKQFQAEVQY 583
           ++Y++V  +T  FE+V+GKGGFG VYHGY+  NGT +VAVK+LS SS QGYK+F+ EV+ 
Sbjct: 560 YTYAEVLAMTKKFERVLGKGGFGMVYHGYI--NGTEEVAVKLLSPSSAQGYKEFKTEVEL 617

Query: 584 I--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGS 641
           +  V+H NL +LVGYCDE  ++ LIY++M  G+L++H SG++ ++W  RL IA +AA G 
Sbjct: 618 LLRVYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKKHFSGSSIISWVDRLNIAVDAASGL 677

Query: 642 HSAFDQGCCPHICESSSSSN 661
                 GC P I      S+
Sbjct: 678 E-YLHIGCKPLIVHRDVKSS 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64483|SIRK_ARATH Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 311/675 (46%), Positives = 411/675 (60%), Gaps = 31/675 (4%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCGIP DSSY D+ TGI YVSDS F+D+G    I++++ S+   +R  LNVRSFP+
Sbjct: 30  FISIDCGIPDDSSYNDETTGIKYVSDSAFVDSGTTKRIAAQFQSSG-FDRHLLNVRSFPQ 88

Query: 61  GIRNCYTL-KPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             R+CY +  P     K+LIR RFMYGNYD    +P F L L  + WDSV L DA+ I+ 
Sbjct: 89  SKRSCYDVPTPRGKGFKYLIRTRFMYGNYDDLGRVPEFDLYLGVNFWDSVKLDDATTILN 148

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
           KEII  P  + + VC+V+  +GTPF+S LE+R L N+TYET   +L L    D   T   
Sbjct: 149 KEIITIPLLDNVQVCVVDKNAGTPFLSVLEIRLLLNTTYETPYDALTLLRRLDYSKTGKL 208

Query: 177 AIRYPDDVYDRIWSP------YRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANAS 230
             RY DD+YDRIW+P      Y+ L     T  +   F  N +Q   T+M TA    N S
Sbjct: 209 PSRYKDDIYDRIWTPRIVSSEYKILN----TSLTVDQFLNNGYQPASTVMSTAETARNES 264

Query: 231 INSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTL 290
           +  L+  ++   P +++Y+++HFAE+E  + NQTRE SI+ N  +    F      T T 
Sbjct: 265 L-YLTLSFRPPDPNAKFYVYMHFAEIEVLKSNQTREFSIWLNEDVISPSFKLRYLLTDTF 323

Query: 291 VSIYPSKGSERIDFSINKTENS-TLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKY 349
           V+  P  G   I+FS+ +      LPPI+NA E+Y   EF    T  QDVDA+  IK  Y
Sbjct: 324 VTPDPVSGIT-INFSLLQPPGEFVLPPIINALEVYQVNEFLQIPTHPQDVDAMRKIKATY 382

Query: 350 GVKKNWQGDPCAPKVYLWQGLNC-SYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQA 408
            VKKNWQGDPC P  Y W+G++C   D    PR++SLN+S S + G+I     +LTS++ 
Sbjct: 383 RVKKNWQGDPCVPVDYSWEGIDCIQSDNTTNPRVVSLNISFSELRGQIDPAFSNLTSIRK 442

Query: 409 LDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
           LDLS N+LTG +P FL+ L  L  LN+ GN L G VP  L ER+KNG LSL    NP LC
Sbjct: 443 LDLSGNTLTGEIPAFLANLPNLTELNVEGNKLTGIVPQRLHERSKNGSLSLRFGRNPDLC 502

Query: 469 HTASCN--KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQG---GRKKGSWELKNR 523
            + SC+  K++N    +     V  + VLLTALA+    K+++Q    G + G  +   R
Sbjct: 503 LSDSCSNTKKKNKNGYIIPLVVVGIIVVLLTALALFRRFKKKQQRGTLGERNGPLKTAKR 562

Query: 524 KFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY 583
            F YS+V  ITNNFE+VIGKGGFG VYHG +  NG QVAVK+LS  S QGYK+F+AEV  
Sbjct: 563 YFKYSEVVNITNNFERVIGKGGFGKVYHGVI--NGEQVAVKVLSEESAQGYKEFRAEVDL 620

Query: 584 I--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQ 639
           +  VHH NLT+LVGYC+E  +M LIYE+MA  NL ++L+G  +  L+WE RL+I+ +AAQ
Sbjct: 621 LMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSFILSWEERLKISLDAAQ 680

Query: 640 GSHSAFDQGCCPHIC 654
           G       GC P I 
Sbjct: 681 GLE-YLHNGCKPPIV 694

Involved in innate immune response of plants.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 297/667 (44%), Positives = 410/667 (61%), Gaps = 30/667 (4%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FIS+DCG+P   SY +  + + ++SD  FI  G   NI +   +N    + F  +R FP+
Sbjct: 29  FISLDCGLPSKESYIEPSSNLTFISDVNFIRGGKTGNIQNNSRTNFIF-KPFKVLRYFPD 87

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVN--LKDASGIV 118
           GIRNCY+L    G  K+LIR  F YGNYDG N  P F L L  ++W SV+  + D    V
Sbjct: 88  GIRNCYSLSVKQG-TKYLIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGDGV 146

Query: 119 TKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL--LLWDVGSTTSE 176
            +EI+H  + N + +CLV TG+ TP ISA+ELRPL+  TY  ++GSL  +     + + E
Sbjct: 147 VEEIVHVTRSNILDICLVKTGTSTPMISAIELRPLRYDTYTARTGSLKSMAHFYFTNSDE 206

Query: 177 AIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSF 236
           AIRYP+DVYDR+W PY    W  I    + + F + +  P  +++TA  P N S   L+F
Sbjct: 207 AIRYPEDVYDRVWMPYSQPEWTQINTTRNVSGFSDGYNPPQGVIQTASIPTNGS-EPLTF 265

Query: 237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPS 296
            W   + + + Y +L FAE++  + N+TRE  I +NG + Y  + P+ F   TL +  P 
Sbjct: 266 TWNLESSDDETYAYLFFAEIQQLKVNETREFKILANG-VDYIDYTPWKFEARTLSNPAPL 324

Query: 297 K---GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK 353
           K   G  R+  S  KT  STLPP++NA EI+   +FP S T+  +V AI  I+  Y + +
Sbjct: 325 KCEGGVCRVQLS--KTPKSTLPPLMNAIEIFSVIQFPQSDTNTDEVIAIKKIQSTYQLSR 382

Query: 354 -NWQGDPCAPKVYLWQGLNCSY-DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDL 411
            +WQGDPC PK + W G++C+  D +  PRIISL+LS SG++G I   I +LT L+ LDL
Sbjct: 383 ISWQGDPCVPKQFSWMGVSCNVIDISTPPRIISLDLSLSGLTGVISPSIQNLTMLRELDL 442

Query: 412 SNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTA 471
           SNN+LTG VPEFL+ +  L V++L GNNL GSVP  L +R KN  L L VD N       
Sbjct: 443 SNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQALQDREKNDGLKLFVDPN-----IT 497

Query: 472 SCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRK--KGSWELKNRKFSYSD 529
              K Q   ++V + AS+  ++V +  L +++  +RRK   RK  + S E+KNR+F YS+
Sbjct: 498 RRGKHQPKSWLVAIVASISCVAVTIIVLVLIFIFRRRKSSTRKVIRPSLEMKNRRFKYSE 557

Query: 530 VAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHH 587
           V ++TNNFE V+GKGGFG VYHG+L  N  QVAVK+LS SS QGYK+F+ EV+ +  VHH
Sbjct: 558 VKEMTNNFEVVLGKGGFGVVYHGFL--NNEQVAVKVLSQSSTQGYKEFKTEVELLLRVHH 615

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GANTLTWEARLRIATEAAQGSHSA 644
            NL +LVGYCDE  ++ LIYEFM  GNL+EHLS   G + L W +RL+IA E+A G    
Sbjct: 616 VNLVSLVGYCDEGIDLALIYEFMENGNLKEHLSGKRGGSVLNWSSRLKIAIESALGIE-Y 674

Query: 645 FDQGCCP 651
              GC P
Sbjct: 675 LHIGCQP 681

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1

 Score =  528 bits (1360), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 302/688 (43%), Positives = 415/688 (60%), Gaps = 54/688 (7%)

Query: 1   FISIDCGIP-HDSSYTDKITGINYVSDSTFIDTGVINNISSEYSS-NKTLERQFLNVRSF 58
           FI++DCG+    S Y +  TG+ Y SD  F+ +G I  I+ E  S  K  ER    +R F
Sbjct: 26  FINLDCGLSIQGSPYKESSTGLTYTSDDGFVQSGKIGKITKELESLYKKPER---TLRYF 82

Query: 59  PEGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIV 118
           P+G+RNC++L  + G  K+LI+  F+YGNYDG+N+IP F L +  ++W +VN  +     
Sbjct: 83  PDGVRNCFSLNVTRG-TKYLIKPTFLYGNYDGRNVIPDFDLYIGPNMWITVNTDNT---- 137

Query: 119 TKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL--LLWDVGSTTSE 176
            KEI+H  K N + VCLV TG+  P+I+ LELRPL +  Y  +SGSL  L     S    
Sbjct: 138 IKEILHVSKSNTLQVCLVKTGTSIPYINTLELRPLADDIYTNESGSLNYLFRVYYSNLKG 197

Query: 177 AIRYPDDVYDRIWS---PYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINS 233
            I YPDDV+DRIW    PY+   W+ +T         ND+ LP  +M+TAV P  AS  +
Sbjct: 198 YIEYPDDVHDRIWKQILPYQD--WQILTTNLQINV-SNDYDLPQRVMKTAVTPIKASTTT 254

Query: 234 LSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSI 293
           + F W    P SQ+Y+FLHFAE++  Q N+TRE ++  NG + +  + P      T+ S 
Sbjct: 255 MEFPWNLEPPTSQFYLFLHFAELQSLQANETREFNVVLNGNVTFKSYSPKFLEMQTVYST 314

Query: 294 YPSK-GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVK 352
            P +    +    + KT  STLPP++NA E Y   +FP   T+  +V AI +I+  YG+ 
Sbjct: 315 APKQCDGGKCLLQLVKTSRSTLPPLINAMEAYTVLDFPQIETNVDEVIAIKNIQSTYGLS 374

Query: 353 KN-WQGDPCAPKVYLWQGLNCSYDGNELPRII-SLNLSSSGISGEIITYIFSLTSLQALD 410
           K  WQGDPC PK +LW GLNC+   +  P II SLNLSSSG++G I+  I +L +LQ LD
Sbjct: 375 KTTWQGDPCVPKKFLWDGLNCNNSDDSTPPIITSLNLSSSGLTGIIVLTIQNLANLQELD 434

Query: 411 LSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKL-CH 469
           LSNN+L+G VPEFL+++  L V+NL+GNNL G VP  L+E+    +L L+++GNPKL C 
Sbjct: 435 LSNNNLSGGVPEFLADMKSLLVINLSGNNLSGVVPQKLIEKK---MLKLNIEGNPKLNCT 491

Query: 470 TASC-NK-----RQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWEL--- 520
             SC NK     RQ     +P+ AS+ S+     AL I   +++      +  +  +   
Sbjct: 492 VESCVNKDEEGGRQIKSMTIPIVASIGSVVAFTVALMIFCVVRKNNPSNDEAPTSCMLPA 551

Query: 521 -----------KNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGT-QVAVKMLSA 568
                      KN+KF+Y++V  +TNNF+K++GKGGFG VY+G    NGT QVAVKMLS 
Sbjct: 552 DSRSSEPTIVTKNKKFTYAEVLTMTNNFQKILGKGGFGIVYYG--SVNGTEQVAVKMLSH 609

Query: 569 SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GAN 623
           SS QGYKQF+AEV+ +  VHHKNL  LVGYC+E   + LIYE+MA G+L+EH+S   G +
Sbjct: 610 SSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGS 669

Query: 624 TLTWEARLRIATEAAQGSHSAFDQGCCP 651
            L W  RL+IA EAAQG       GC P
Sbjct: 670 ILNWGTRLKIALEAAQGLE-YLHNGCKP 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG3|Y5182_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1

 Score =  526 bits (1354), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 300/689 (43%), Positives = 423/689 (61%), Gaps = 55/689 (7%)

Query: 1   FISIDCGIPH-DSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
           FIS+DCG+   +S Y    TG+ Y SD+  + +G    ++ E+     +++  L +R FP
Sbjct: 26  FISVDCGLSLLESPYDAPQTGLTYTSDADLVASGKTGRLAKEFE--PLVDKPTLTLRYFP 83

Query: 60  EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           EG+RNCY L  +S D  +LI+A F+YGNYDG N+ P+F+L L  ++W +V+  D      
Sbjct: 84  EGVRNCYNLNVTS-DTNYLIKATFVYGNYDGLNVGPNFNLYLGPNLWTTVSSNDT----I 138

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL--LLWDVGSTTSEA 177
           +EII   + N + VCLV TG   PFI+ LELRP+K + Y TQSGSL  L     S +S  
Sbjct: 139 EEIILVTRSNSLQVCLVKTGISIPFINMLELRPMKKNMYVTQSGSLKYLFRGYISNSSTR 198

Query: 178 IRYPDDVYDRIWSPYRSLRWESITR--RSDSTFFENDWQLPLTIMRTAVRPANASINSLS 235
           IR+PDDVYDR W P     W  +T   + +++     ++LP ++M  A  P  A+ ++L+
Sbjct: 199 IRFPDDVYDRKWYPLFDDSWTQVTTNLKVNTSI---TYELPQSVMAKAATPIKAN-DTLN 254

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
             W    P +Q+Y ++H AE++  + N+TRE ++  NG+  +GPF P    T ++V + P
Sbjct: 255 ITWTVEPPTTQFYSYVHIAEIQALRANETREFNVTLNGEYTFGPFSPIPLKTASIVDLSP 314

Query: 296 SK-GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK- 353
            +    R    + KT  STLPP+LNA E +   +FP   T++ DV  I +++  YG+ + 
Sbjct: 315 GQCDGGRCILQVVKTLKSTLPPLLNAIEAFTVIDFPQMETNENDVAGIKNVQGTYGLSRI 374

Query: 354 NWQGDPCAPKVYLWQGLNC-SYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLS 412
           +WQGDPC PK  LW GLNC + D +  P I SL+LSSSG++G I   I +LT LQ LDLS
Sbjct: 375 SWQGDPCVPKQLLWDGLNCKNSDISTPPIITSLDLSSSGLTGIITQAIKNLTHLQILDLS 434

Query: 413 NNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPK-LCHTA 471
           +N+LTG VPEFL+++  L V+NL+GNNL GSVP  LL++     + L+V+GNP  LC T 
Sbjct: 435 DNNLTGEVPEFLADIKSLLVINLSGNNLSGSVPPSLLQKKG---MKLNVEGNPHILCTTG 491

Query: 472 SC-----NKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRK--------------QGG 512
           SC     +  +    IVPV AS+ S++VL+ AL +   L++++                G
Sbjct: 492 SCVKKKEDGHKKKSVIVPVVASIASIAVLIGALVLFLILRKKRSPKVEGPPPSYMQASDG 551

Query: 513 RKKGSWE----LKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGT-QVAVKMLS 567
           R   S E     KNR+FSYS V  +TNNF++++GKGGFG VYHG++  NGT QVAVK+LS
Sbjct: 552 RLPRSSEPAIVTKNRRFSYSQVVIMTNNFQRILGKGGFGMVYHGFV--NGTEQVAVKILS 609

Query: 568 ASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT- 624
            SS QGYKQF+AEV+ +  VHHKNL  LVGYCDE  N+ LIYE+MA G+L+EH+SG    
Sbjct: 610 HSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEHMSGTRNR 669

Query: 625 --LTWEARLRIATEAAQGSHSAFDQGCCP 651
             L W  RL+I  E+AQG       GC P
Sbjct: 670 FILNWGTRLKIVIESAQGLE-YLHNGCKP 697

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  520 bits (1339), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 295/680 (43%), Positives = 418/680 (61%), Gaps = 37/680 (5%)

Query: 1   FISIDCGIPHDSS-YTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
           FIS+DCG+P D S Y D   G+ + SDSTFI TG I+++  + + N  L +Q+L +R FP
Sbjct: 25  FISLDCGLPSDESPYDDSFNGLTFTSDSTFIQTGKIDSVDKDLNIN--LSKQYLTLRYFP 82

Query: 60  EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           EG RNCY+L    G   +LI   F+YGNYDG N  P+F + L  + W  ++L        
Sbjct: 83  EGKRNCYSLDVKRG-TTYLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLDGEKEGTR 141

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL-WDVGSTTSEA- 177
           +EIIH  + N + +CLV TG   P ISA+E+RPL+N+TY TQSGSL++ + V  + S+A 
Sbjct: 142 EEIIHKARSNSLDICLVKTGETLPIISAIEIRPLRNNTYVTQSGSLMMSFRVYLSNSDAS 201

Query: 178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFY 237
           IRY DDV+DRIWSP+       IT   +     N +++P  I++TA  P NAS   L   
Sbjct: 202 IRYADDVHDRIWSPFNGSSHTHITTDLNINN-SNAYEIPKNILQTAAIPRNASA-PLIIT 259

Query: 238 WKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSK 297
           W      ++ Y+++HFAE++  + N+TR+  +   G   +  F P      TL +  P K
Sbjct: 260 WDPLPINAEVYLYMHFAEIQTLEANETRQFDVILRGNFNHSGFSPTKLKVFTLYTEEPMK 319

Query: 298 -GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK-NW 355
            GSE     + KT NSTLPP++NA E Y   EF    TS  DVDAI +IK  Y + K  W
Sbjct: 320 CGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQLETSLSDVDAIKNIKNTYKLNKITW 379

Query: 356 QGDPCAPKVYLWQGLNCSY-DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNN 414
           QGDPC P+   W+ + C+Y DG+  P IISL+LS SG++G I   + + T LQ LDLSNN
Sbjct: 380 QGDPCLPQDLSWESIRCTYVDGSTSPTIISLDLSKSGLNGSIPQILQNFTQLQELDLSNN 439

Query: 415 SLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           SLTG VP FL+ +  L ++NL+GNNL GSVP  LL++ K GL+ L ++GNP LC ++ CN
Sbjct: 440 SLTGPVPIFLANMKTLSLINLSGNNLSGSVPQALLDKEKEGLV-LKLEGNPDLCKSSFCN 498

Query: 475 KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRK------------------QGGRKKG 516
             + NK+++PV AS  SL +++  +A+ +  +++K                     + + 
Sbjct: 499 TEKKNKFLLPVIASAASLVIVVVVVALFFVFRKKKASPSNLHAPPSMPVSNPGHNSQSES 558

Query: 517 SWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ 576
           S+  K  +F+YS+V ++TNNF+K +G+GGFG VYHG++     QVAVK+LS SS QGYK 
Sbjct: 559 SFTSKKIRFTYSEVQEMTNNFDKALGEGGFGVVYHGFVNV-IEQVAVKLLSQSSSQGYKH 617

Query: 577 FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN---TLTWEARL 631
           F+AEV+ +  VHH NL +LVGYCDE  ++ LIYE+M  G+L++HLSG +    L+WE+RL
Sbjct: 618 FKAEVELLMRVHHINLVSLVGYCDEGEHLALIYEYMPNGDLKQHLSGKHGGFVLSWESRL 677

Query: 632 RIATEAAQGSHSAFDQGCCP 651
           +I  +AA G       GC P
Sbjct: 678 KIVLDAALGLE-YLHTGCVP 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG6|Y5189_ARATH Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 304/686 (44%), Positives = 418/686 (60%), Gaps = 57/686 (8%)

Query: 1   FISIDCG-IPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
           FIS+DCG +P + +Y +K T I Y SD+T+ID+GV   I+  Y +    ++Q   +RSFP
Sbjct: 25  FISLDCGLVPTEITYVEKSTNITYRSDATYIDSGVPGKINEVYRTQ--FQQQIWALRSFP 82

Query: 60  EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           EG RNCY    ++   K+LIR  F+YGNYDG N +PSF L +  + W SV++        
Sbjct: 83  EGQRNCYNFSLTAKR-KYLIRGTFIYGNYDGLNQLPSFDLYIGPNKWTSVSIPGVRNGSV 141

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWD--VGSTTSEA 177
            E+IH  +++++ +CLV TG  TPFIS+LELRPL N+TY T+SGSL++      S T   
Sbjct: 142 SEMIHVLRQDHLQICLVKTGETTPFISSLELRPLNNNTYVTKSGSLIVVARLYFSPTPPF 201

Query: 178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFY 237
           +RY +DV+DRIW P+   +  S+     S    N + +P T+ +TA  P NA+   L   
Sbjct: 202 LRYDEDVHDRIWIPFLDNK-NSLLSTELSVDTSNFYNVPQTVAKTAAVPLNAT-QPLKIN 259

Query: 238 WKTSTPESQYYIFLHFAEVEGRQENQTREMSI-YSNGKLWYGPFVPYTFFTTTLVSIYPS 296
           W      SQ YI++HFAE+E  + N+TRE +I Y+ G+ W+  F P  F  TT   +Y  
Sbjct: 260 WSLDDITSQSYIYMHFAEIENLEANETREFNITYNGGENWFSYFRPPKFRITT---VYNP 316

Query: 297 KGSERID----FSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVK 352
                +D    F+ + T NST PP++N  EIY   E P   T Q +V A+M+IK  YG+ 
Sbjct: 317 AAVSSLDGNFNFTFSMTGNSTHPPLINGLEIYQVLELPQLDTYQDEVSAMMNIKTIYGLS 376

Query: 353 K--NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALD 410
           K  +WQGDPCAP++Y W+GLNCSY     P+IISLNLS S +SG I + I  LT L+ LD
Sbjct: 377 KRSSWQGDPCAPELYRWEGLNCSYPNFAPPQIISLNLSGSNLSGTITSDISKLTHLRELD 436

Query: 411 LSNNSLTGSVPEFLSELHFLRVLNLTGN-NLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
           LSNN L+G +P   S++  L ++NL+GN NL  SVP  L +R  N  L+L  D   K   
Sbjct: 437 LSNNDLSGDIPFVFSDMKNLTLINLSGNKNLNRSVPETLQKRIDNKSLTLIRDETGK--- 493

Query: 470 TASCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQ------GGRKKGSWELKN- 522
                   N+  +V +AASV S+  +L  LAI++ + R+KQ      G R   +  +K+ 
Sbjct: 494 --------NSTNVVAIAASVASVFAVLVILAIVFVVIRKKQRTNEASGPRSFTTGTVKSD 545

Query: 523 ------------RKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS 570
                       RKF+YS+V K+T NFE+V+GKGGFGTVYHG L+   TQVAVKMLS SS
Sbjct: 546 ARSSSSSIITKERKFTYSEVLKMTKNFERVLGKGGFGTVYHGNLD--DTQVAVKMLSHSS 603

Query: 571 VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG---ANTL 625
            QGYK+F+AEV+ +  VHH++L  LVGYCD+  N+ LIYE+M KG+L E++SG    N L
Sbjct: 604 AQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMEKGDLRENMSGKHSVNVL 663

Query: 626 TWEARLRIATEAAQGSHSAFDQGCCP 651
           +WE R++IA EAAQG       GC P
Sbjct: 664 SWETRMQIAVEAAQGLE-YLHNGCRP 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	678
255549700	884	BRASSINOSTEROID INSENSITIVE 1-associated	0.955	0.733	0.519	0.0
255549714	915	BRASSINOSTEROID INSENSITIVE 1-associated	0.954	0.707	0.526	0.0
255549712	884	BRASSINOSTEROID INSENSITIVE 1-associated	0.935	0.717	0.527	0.0
297743150	918	unnamed protein product [Vitis vinifera]	0.949	0.701	0.517	0.0
225442394	879	PREDICTED: putative leucine-rich repeat	0.951	0.733	0.519	0.0
255549760	1234	Serine/threonine-protein kinase-transfor	0.952	0.523	0.511	0.0
356522218	890	PREDICTED: putative leucine-rich repeat	0.949	0.723	0.502	0.0
255549706	886	BRASSINOSTEROID INSENSITIVE 1-associated	0.952	0.729	0.500	0.0
1321686	876	light repressible receptor protein kinas	0.955	0.739	0.507	1e-180
255549716	892	Nodulation receptor kinase precursor, pu	0.952	0.724	0.509	1e-180

>gi|255549700|ref|XP_002515901.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544806|gb|EEF46321.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/674 (51%), Positives = 458/674 (67%), Gaps = 26/674 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCG+P +SSYTD+ T +NY+SD++FID G+I  I+ + ++N T +RQ L+VRSFPE
Sbjct: 31  FISIDCGLPANSSYTDETTSLNYISDASFIDVGIITTITPKVTTNST-DRQQLSVRSFPE 89

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G RNC+ ++ +  + K+LIRA F +G+YDG N +P F L L  + W +V + +AS  V K
Sbjct: 90  GDRNCFNVELAK-NTKYLIRAIFAHGDYDGSNELPEFDLHLGPNKWVTVKILNASIPVIK 148

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLL---LWDVGSTTSEA 177
           EIIH P  NY+++CLVNT SG PFISALELRPLKN+TY  QSG+L+     D+GS T++ 
Sbjct: 149 EIIHTPTLNYIHICLVNTDSGMPFISALELRPLKNTTYVAQSGALVKSTRLDLGSLTNKT 208

Query: 178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFEN--DWQLPLTIMRTAVRPANASINSLS 235
           +RYPDDV+DRIW+P    +W  ++   D+   +N  D+Q P  +MRTA  P NAS N + 
Sbjct: 209 VRYPDDVFDRIWTPDHFHKWTDLST-PDTVDAQNHIDFQPPSVVMRTANMPTNASEN-ME 266

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
           FY       S +Y+++HFAE+   Q NQ+R  +I  NG +WYGP +P    + T+ S +P
Sbjct: 267 FYIDIDDTTSLFYVYMHFAEIVELQANQSRLFNISLNGTIWYGPVIPNHLSSGTVYSQFP 326

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
             G   + FS+ K E STLPP+LNA EIY   +   S T Q DVDAIM IK  YG+ KNW
Sbjct: 327 IIGGNNM-FSLFKIEGSTLPPLLNAIEIYFVVDLSQSETDQDDVDAIMKIKSTYGITKNW 385

Query: 356 QGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
           QGDPCAP+ Y+W GLNCSY  ++ P + SLNLSSSG+ GEI++ I +L SL+ LDLSNNS
Sbjct: 386 QGDPCAPQAYVWHGLNCSYSDDDPPTVKSLNLSSSGLRGEIVSEIANLRSLELLDLSNNS 445

Query: 416 LTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN- 474
           L+GS+P+FLS +  L+VLNLTGN L G++PA L ER++ G L LSV GNP+LC + SC  
Sbjct: 446 LSGSLPDFLSRMTSLKVLNLTGNKLTGTIPADLFERSQQGSLLLSVSGNPELCPSVSCTK 505

Query: 475 ---------KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKKGSWELKNRKF 525
                          + +  AA VV L           N  +       +   E K R+F
Sbjct: 506 KKKSVVVPVVASVVAFFILAAALVVILRYFFVRSQAKTNEAKISYETNDEPLVESKKRQF 565

Query: 526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI- 584
           SYS++ KITNNF+K++GKGGFGTVYHG L  +GTQVAVK+LS SS QGYK+FQAEV+ + 
Sbjct: 566 SYSEILKITNNFDKILGKGGFGTVYHGTLN-DGTQVAVKVLSLSSAQGYKEFQAEVKLLL 624

Query: 585 -VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGS 641
            VHH+NLTTLVGYC+E TN+GLIYE+MA GNLE++LS +  NTL+WE RLRIATEAAQG 
Sbjct: 625 RVHHRNLTTLVGYCNEGTNLGLIYEYMANGNLEDYLSDSCLNTLSWEIRLRIATEAAQGL 684

Query: 642 HSAFDQGCCPHICE 655
                 GC P I  
Sbjct: 685 E-YLHNGCKPQIVH 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549714|ref|XP_002515908.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544813|gb|EEF46328.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/671 (52%), Positives = 464/671 (69%), Gaps = 24/671 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCGI  +++YTD  T I+YVSD+ FIDTG   +I++EY+    + +Q  NVRSF E
Sbjct: 58  FISIDCGISENATYTDSTTSIDYVSDAAFIDTGKSKSIAAEYT-RYNINQQLQNVRSFAE 116

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G+RNCY +    G  K+LIRA F+YGNYDGQN  P F L L +  W++V+  +++ I+TK
Sbjct: 117 GVRNCYKIGLKKG-AKYLIRAEFLYGNYDGQNKAPIFDLYLGSSKWETVDTINSTMIITK 175

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTSEA 177
           EIIH    +Y+ VCLVNTGSGTPF+S LELRP++ S Y T  GSL  +   DVGSTT+  
Sbjct: 176 EIIHLINTSYIDVCLVNTGSGTPFMSKLELRPIRISAYSTSLGSLARFSRSDVGSTTNRT 235

Query: 178 IRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANAS-INSLS 235
           +RY DDVYDRIW+P    +W  I T  +     +ND++ P  +MRTA  PAN +   ++S
Sbjct: 236 LRYADDVYDRIWTPNHFFKWAEISTSETIDALAQNDYRPPSIVMRTAGIPANDNEPMTVS 295

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
             ++ +T   ++ +++HFAE+   + N++R+ +I  NG+ W+GP  P   +TTT+ S   
Sbjct: 296 IDFEDTT--FRFLVYMHFAEILKLEANESRQFNISLNGEHWFGPLRPDYLYTTTVFSPTV 353

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
             G +  +FSI KTENSTLPP+LNA EIY   +     ++Q+DVDAI +IK  YG+K+NW
Sbjct: 354 LSGGQ-YEFSIYKTENSTLPPLLNAIEIYYILDLSQPQSNQEDVDAITNIKSSYGIKRNW 412

Query: 356 QGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
           QGDPCAP+ YLW+GLNCSY GN +PRIISLNLSSSG++GEI + I SLTSL++LDLSNN 
Sbjct: 413 QGDPCAPQAYLWEGLNCSYSGNVMPRIISLNLSSSGLTGEIPSSISSLTSLESLDLSNNY 472

Query: 416 LTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNK 475
           LTGSVP+FLS+L  L VL LTGN L GSVP  L+E+++  LL LSV GN  LC  +SC  
Sbjct: 473 LTGSVPDFLSQLPSLNVLILTGNRLSGSVPPSLVEKSEQNLLVLSVGGNANLCLKSSCKN 532

Query: 476 RQNNKYIVPVAASVVSLSVLLTAL-AILWNLKRRKQGGRKK------GSWELKNRKFSYS 528
            + N  +VPV AS+  + ++++AL AIL+  KRRKQ           G  E K R+F+YS
Sbjct: 533 EKKNNVVVPVVASIAGVLIIISALAAILYTRKRRKQQEEDTKTSNIYGPLESKERQFTYS 592

Query: 529 DVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH 586
           ++  ITNNFE+V+GKGGFGTVYHGYL+   TQVAVK+LS  S QGYK+F AEV+ +  VH
Sbjct: 593 EILNITNNFERVLGKGGFGTVYHGYLD--DTQVAVKILSPLSAQGYKEFHAEVKLLLRVH 650

Query: 587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN--TLTWEARLRIATEAAQGSHSA 644
           H+NLT+LVG+C+E T MGLIYE+MA G+LE  LSG N   L WE RL IA EAA+G    
Sbjct: 651 HRNLTSLVGFCNEGTKMGLIYEYMANGDLEHLLSGRNRHVLKWERRLDIAVEAAKGLE-Y 709

Query: 645 FDQGCCPHICE 655
              GC P I  
Sbjct: 710 LHNGCKPPIVH 720

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549712|ref|XP_002515907.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544812|gb|EEF46327.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 461/658 (70%), Gaps = 24/658 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCG+P +SSYTD  TG+NYVSD+ FIDTG+INN++   +++ +++RQ L+VRSFPE
Sbjct: 32  FISIDCGLPANSSYTDATTGLNYVSDAAFIDTGIINNLAPGLNTS-SIDRQQLSVRSFPE 90

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G RNCY ++ + G  K+LIRA F+Y NYDG + +P F L L  + W +V + +A+  V  
Sbjct: 91  GDRNCYQVELTRG-TKYLIRAIFLYRNYDGLSKLPHFDLHLGPNKWITVKILNATIPVIT 149

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQS-GSLLLW---DVGSTTSE 176
           EII+ P  NY++VCLVNTG GTPFISALELRPLKN+TYE +S G+L  +   D GS T++
Sbjct: 150 EIIYTPILNYIHVCLVNTGLGTPFISALELRPLKNTTYEIRSEGALAKFARLDFGSVTNK 209

Query: 177 AIRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLS 235
            +RYPDDVYDRIW+P    +W  + T  +    F ND+Q P  +M TA  P NAS   + 
Sbjct: 210 TVRYPDDVYDRIWTPDHYYKWTDLSTPETIDAQFHNDFQPPSIVMSTANVPTNAS-EDMQ 268

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
           F+        Q+Y ++HFAE+   + NQ+R+ +I  NG +++GP +P   +T+++ +  P
Sbjct: 269 FFIDNEDTSLQFYFYMHFAEIVKLEANQSRQFNISLNGTIFFGPVIPDYLYTSSVYNGLP 328

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
                 + FS+ K   STLPP+LNA EIY   +   S T Q DVDAI  IK  YG+ +NW
Sbjct: 329 INAGSNV-FSLFKIGGSTLPPLLNAIEIYFFVDLSQSQTDQDDVDAITKIKSTYGITRNW 387

Query: 356 QGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
           QGD CAP+ Y+WQGLNCSY  N+ P+I SLNLSSSG++GEI++ I +L SL+ LDLSNNS
Sbjct: 388 QGDACAPQAYVWQGLNCSYSDNDPPKITSLNLSSSGLTGEIVSDIANLKSLEFLDLSNNS 447

Query: 416 LTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNK 475
           L+G VP+FLS++  L+VLNLTGN L G +P  L ER + G L LSV GNP+LC + SC K
Sbjct: 448 LSGPVPDFLSQMPSLKVLNLTGNKLTGRIPVDLFERTQKGSLLLSVSGNPELCPSVSCKK 507

Query: 476 RQNNKYIVPVAASVVSLSVLLTALAILWN---LKRRKQGGRKKGS------WELKNRKFS 526
           ++ +  +  VA+      +L  A+A++     L+   + G  K S       ELKN++F+
Sbjct: 508 KEKSIAVPVVASVASVF-ILAAAVAVILRYRILRSVSETGETKLSHESNEPMELKNKQFT 566

Query: 527 YSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-- 584
           YS+V KITNNFEKV+GKGGFGTVY+G L  +GTQVAVK+LS SSVQGYK+F AEV+ +  
Sbjct: 567 YSEVLKITNNFEKVLGKGGFGTVYYGTLA-DGTQVAVKILSQSSVQGYKEFLAEVKLLMR 625

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQG 640
           VHH+NLTTLVG C E TNMGLIYE+MA GNLE++LSG+  NTL+WEARLRIA EA QG
Sbjct: 626 VHHRNLTTLVGCCIEGTNMGLIYEYMANGNLEDYLSGSNLNTLSWEARLRIALEAGQG 683

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743150|emb|CBI36017.3| unnamed protein product [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/672 (51%), Positives = 453/672 (67%), Gaps = 28/672 (4%)

Query: 2   ISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEG 61
           I+IDCG+P D  Y D  TG+ Y SD++FI +G+  NISS++SS  TL +   NVRSFP+G
Sbjct: 64  INIDCGLPEDCKYIDAETGLQYTSDASFIRSGINKNISSKFSST-TLHKSLTNVRSFPQG 122

Query: 62  IRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
            RNCYTL+P  G    +LIRA FMYGNYD  N +P F L +  ++WDSV L +AS +V K
Sbjct: 123 KRNCYTLRPPEGHGTMYLIRASFMYGNYDELNQVPQFDLYIGVNMWDSVKLDNASHLVMK 182

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTSEA 177
           EI+HAP  + +YVCLVN G G PFIS+LE+R   +S+Y+T+SGSL L+   D GSTT+E 
Sbjct: 183 EILHAPSDDDIYVCLVNIGYGEPFISSLEVRHFHDSSYKTESGSLALYRRLDAGSTTNEI 242

Query: 178 IRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSF 236
           +R+ DD YDRIW PY     ES+ T     +  E +++LP  +M TA+RP N+S  SL F
Sbjct: 243 VRFKDDAYDRIWFPYNLPDCESLNTTVPIDSHAETEYKLPSKVMTTAIRPMNSSA-SLDF 301

Query: 237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLW-YGPFVPYTFFTTTLVSIYP 295
            +       ++Y+++HFAE+EG QENQTR  SI  NG  W     VP    + T+ +  P
Sbjct: 302 DFDIGDSTLEFYVYMHFAELEGLQENQTRNFSITLNGNPWGEANIVPKYLHSRTVNNKQP 361

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
            +GS ++ FSI KT NS+LPPILNA EIY+ K    + T Q+DV+ I  IK  Y V+KNW
Sbjct: 362 VRGS-KLKFSIYKTLNSSLPPILNAMEIYMVKGLLQAPTCQEDVNGISRIKSFYLVEKNW 420

Query: 356 QGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
           QGDPCAP V  W GL CS +G E PRIISL LSSSG+ G I   + +LT+LQ LDLSNNS
Sbjct: 421 QGDPCAP-VQPWDGLTCSNNGYESPRIISLKLSSSGLRGTISPSLLNLTALQFLDLSNNS 479

Query: 416 LTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNK 475
           LTG +PEFLS L FL  LN+TGN L GSVP  L+ R++ G LSLSV  NP LC +A C  
Sbjct: 480 LTGELPEFLSRLSFLTALNVTGNKLSGSVPPDLIARSEKGSLSLSVANNPDLCPSAQC-- 537

Query: 476 RQNNKYIVPVAASVV-SLSVLLTALAILWNLKRRKQGGRK-----KGSWELK--NRKFSY 527
           ++N   + P+ A+VV SL ++  AL I+W+LKRRK+  +      + +W LK  N++F Y
Sbjct: 538 KENKNSVGPIVAAVVSSLVIIFLALVIIWSLKRRKKATKSLVRSPEETWSLKMENQRFRY 597

Query: 528 SDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V 585
            ++  ITN+F+ V+G GGFGTVYHG +  NGTQVA+KMLS SS QG K+F+ E + +  V
Sbjct: 598 LEIVSITNDFQTVLGTGGFGTVYHGCM-LNGTQVAIKMLSQSSKQGMKEFRNEARLLMRV 656

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT----LTWEARLRIATEAAQGS 641
           HH+NL +LVGYC E TNMGLIYE+MA GNL+ +LSGA+     L+W  RL+IA +AAQG 
Sbjct: 657 HHRNLASLVGYCHEGTNMGLIYEYMAGGNLQNYLSGADISTSPLSWIERLQIAVDAAQGL 716

Query: 642 HSAFDQGCCPHI 653
                 GC P I
Sbjct: 717 E-YMHCGCKPPI 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442394|ref|XP_002276980.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Vitis vinifera]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/670 (51%), Positives = 452/670 (67%), Gaps = 25/670 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCG+   + Y D  T I Y SD+ FIDTG   +IS +  S + L +   +VR+FPE
Sbjct: 25  FISIDCGMAEGTDYNDATTSILYTSDAQFIDTGTNKSISPDLES-ENLPKYLSSVRAFPE 83

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G++NCYT K   G+ K+LIR+ FMYGNYD +N  P F L L AD WDSV L+++S +V K
Sbjct: 84  GLKNCYTFKLVQGN-KYLIRSVFMYGNYDSKNQAPEFGLYLNADEWDSVKLENSSDVVVK 142

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSEA 177
           EIIH  + NY +VCLVNTG GTPFISALELR L ++ Y+TQS SL+L    D+GST+++ 
Sbjct: 143 EIIHVQETNYSHVCLVNTGLGTPFISALELRLLNSTIYKTQSASLVLATRLDIGSTSNDT 202

Query: 178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFE-NDWQLPLTIMRTAVRPANASINSLSF 236
           IR+ DD YDRIW PY S  WE ++ R  S     N + LP  +M TAV P N S  SL  
Sbjct: 203 IRFKDDDYDRIWKPYTSSSWELVSLRYASDLLSANPFILPPRVMTTAVTPKNGS-RSLEL 261

Query: 237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPS 296
            +       Q+Y+++HFAEVE   +   R  +I  NG  WYGP         T+ S Y  
Sbjct: 262 QYDPDDATKQFYVYMHFAEVEELGDGGYRNFTILLNGDFWYGPMSVQYLSPVTVYSQYTV 321

Query: 297 KGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQ 356
            G+  ++ S+ +  +S  PPILNA E+Y  KEF  S T Q DV+AI ++K  YGVK+NWQ
Sbjct: 322 SGTS-LELSLVQANDSKFPPILNAVELYWVKEFLQSPTEQSDVEAIRNVKSVYGVKRNWQ 380

Query: 357 GDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSL 416
           GDPCAPK +LW GL CSY+G   PRIISL+LSSSG+SG+I + + +L SLQ LDLSNNSL
Sbjct: 381 GDPCAPKKHLWDGLECSYNGYNSPRIISLDLSSSGLSGKIDSSLSNLESLQYLDLSNNSL 440

Query: 417 TGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKR 476
           TG VP+FLS+L  L+ LNL+GN   GSVP+ L++R+KNG LSLSVDGNP LC  ASCN +
Sbjct: 441 TGEVPDFLSQLPLLKTLNLSGNEFTGSVPSLLIQRSKNGSLSLSVDGNPNLCVMASCNNK 500

Query: 477 QNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGR---------KKGSWELKNRKFSY 527
           ++   ++PV AS+  + VLL A  ILW LKRR+Q  +         + G  E KN +F+Y
Sbjct: 501 KS--VVIPVIASIAVVLVLLIAFLILWGLKRRRQQRQVLESKANYEEDGRLESKNLQFTY 558

Query: 528 SDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V 585
           S++  ITNNF+KV+GKGGFG+VY GYL  +GTQVAVKMLS  S QG+K+F++E Q +  V
Sbjct: 559 SELVNITNNFQKVLGKGGFGSVYGGYLN-DGTQVAVKMLSEQSAQGFKEFRSEAQLLTKV 617

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQGSHS 643
           HH+NL  L+GYC+E    G++YE+MA GNL EHLSG +T  L+WE RL+IA +AAQ +  
Sbjct: 618 HHRNLAPLIGYCNEGRYKGIVYEYMANGNLREHLSGKDTPVLSWEQRLQIAVDAAQ-AFE 676

Query: 644 AFDQGCCPHI 653
              +GC P I
Sbjct: 677 YLHEGCKPPI 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549760|ref|XP_002515931.1| Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis] gi|223544836|gb|EEF46351.1| Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/668 (51%), Positives = 450/668 (67%), Gaps = 22/668 (3%)

Query: 2   ISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEG 61
           I+IDCG+  DSS T+  TG++Y+SD+ + +TGV   ISS +SS+       + VRSF +G
Sbjct: 32  INIDCGLSEDSSSTEVKTGMHYISDTLYTNTGVNKKISSNFSSDAQFPVSLMTVRSFSQG 91

Query: 62  IRNCYTLKPSSGDVK-FLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           IRNCYTL+P  G    +LIRA FMYGNYD  N +P FSL L  ++WD+V   +AS +V K
Sbjct: 92  IRNCYTLRPPEGKASIYLIRASFMYGNYDNLNQLPQFSLYLGVNLWDTVKFDNASHVVIK 151

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTSEA 177
           EIIH P  N +YVCL+NTGSGTPFISALELR   NSTY T+SGSL+L+   D GSTT+E 
Sbjct: 152 EIIHVPALNDIYVCLLNTGSGTPFISALELRHFHNSTYRTESGSLVLFQRLDFGSTTNEI 211

Query: 178 IRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSF 236
           +RY DD YDRIW PY   ++ ++ T  +  +    D+ LP  +M+TAV P NA+  SL+F
Sbjct: 212 VRYHDDAYDRIWFPYNCPQYAALSTSFAVDSLKTTDFNLPSKVMQTAVEPMNAN-ESLNF 270

Query: 237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPS 296
            +   TP   +YI++HFAEVE  Q NQ R  +I  NGKL+    V     + T+ ++ P 
Sbjct: 271 EFDIGTPNMNFYIYMHFAEVESIQRNQYRGFNIALNGKLFNEGVVLKYLQSMTISTMQPM 330

Query: 297 KGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQ 356
           +G+ +I  S+NK  NSTLPPILNA EIYL  EF    T Q+D ++I  I   Y V K WQ
Sbjct: 331 RGA-KISISLNKLPNSTLPPILNAMEIYLMNEFWQQPTYQEDANSIEDIMSSYNVGKGWQ 389

Query: 357 GDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSL 416
           GDPC P    W GLNCS +G + PRIISLNLSS GI+G+I + + +L  LQ LDLSNNSL
Sbjct: 390 GDPCLPAP-AWDGLNCSDNGYDPPRIISLNLSSIGITGQISSSLSNLKFLQHLDLSNNSL 448

Query: 417 TGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKR 476
           TG+VPEFLS+L  L++LNL GN L GS+P+ L+E++ N  L L +DGNP+LC  ++C K 
Sbjct: 449 TGAVPEFLSQLPDLKILNLGGNRLSGSIPSALMEKSNNQSLLLRLDGNPELCLLSTCEKE 508

Query: 477 QNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGR-------KKGSWELKNRKFSYSD 529
           + + + VP+ A+VV L+ +  AL ILW  KRRK   R       +  S +   R+F+Y+ 
Sbjct: 509 KKSVF-VPIVATVVPLAAIFLALIILWRYKRRKVPRRSVNSQKEEGSSLKSDKRQFTYAK 567

Query: 530 VAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHH 587
           + +ITNNF  VIGKGGFGTVYHG+L  +GTQVAVKMLSA+S QG  QF+ E   +  VHH
Sbjct: 568 IVRITNNFSTVIGKGGFGTVYHGHLT-DGTQVAVKMLSATSAQGSNQFRTEAHLLMRVHH 626

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQGSHSAF 645
           +NL + +GYC+E TN+G+IYE+MA GNLE++LS  +   LTW+ RL+IA +AAQG     
Sbjct: 627 RNLASFIGYCNEGTNIGIIYEYMACGNLEQYLSDKSIEPLTWKERLQIALDAAQGLE-YL 685

Query: 646 DQGCCPHI 653
             GC P I
Sbjct: 686 HHGCKPPI 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522218|ref|XP_003529744.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Glycine max]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/684 (50%), Positives = 445/684 (65%), Gaps = 40/684 (5%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           F SIDCG+P  SSY +K TGI Y+SD+ FID GV  +IS    S  T  +Q   VRSFP 
Sbjct: 29  FTSIDCGLPEASSYNEKTTGIFYISDAKFIDAGVSKSISPAQKS--THLQQLAYVRSFPS 86

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G RNCY +  +SG  K+LIRA F YGNYDG N  P F L L A++WD+VN  +AS     
Sbjct: 87  GERNCYRINVTSG-TKYLIRATFFYGNYDGLNQPPQFDLHLGANIWDTVNFPNASLSEIS 145

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW----DVGSTTSE 176
           EIIH P  +Y+  CLVNTG GTPFISA+ELR L N+ Y T S   L +    D+GS T+ 
Sbjct: 146 EIIHTPSLDYIQPCLVNTGKGTPFISAIELRTLNNAFYVTASAESLAYYQRYDLGSITNL 205

Query: 177 AIRYPDDVYDRIWSPYRSLRWESITRRSDS-TFFENDWQLPLTIMRTAVRPANASINSLS 235
             RY  DVYDRIW P+   +W  ++        F+ND++LP  +M TA  P NAS     
Sbjct: 206 GYRYNYDVYDRIWVPHGLNQWTQLSSTLHLLDIFQNDYKLPEVVMSTAATPINASA-PFQ 264

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
           FYW     + ++YI++HF+EVE   EN+TR  +I+ NGKL+YGP  P    T T+ +   
Sbjct: 265 FYWGPDNVDDKFYIYMHFSEVEILAENETRTFNIFMNGKLFYGPLTPGYLTTNTIYAKSA 324

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
             G+ R  FS+ KT  STLPPI+NA EIY   +FP S T Q DVDAI +IK  YGV +NW
Sbjct: 325 LTGATRYLFSLAKTGTSTLPPIINAMEIYKVIDFPQSETEQDDVDAITNIKNAYGVDRNW 384

Query: 356 QGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
           QGDPC P  Y+W+GLNCSYD    PRI SLNLSSSG++G+I ++I  LT LQ LDLSNNS
Sbjct: 385 QGDPCGPVAYIWEGLNCSYDNT--PRITSLNLSSSGLTGQISSFISELTMLQYLDLSNNS 442

Query: 416 LTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNK 475
           L+GS+P+FL++L  L+VLNL  NNL G VP GL+ER+K G LSLS+  NP LC +  C +
Sbjct: 443 LSGSLPDFLTQLQSLKVLNLVNNNLTGPVPGGLVERSKEGSLSLSLGQNPNLCESDPCIQ 502

Query: 476 RQNNK-------------YIVPVAASVVSLSVL--LTALAILWNLKRRKQGGRKKGS--- 517
           + NNK              ++P A SV  + VL  +   AI+  LK+RK  G+   +   
Sbjct: 503 QSNNKQPDAANQNKNKNNIVIPAATSVAGILVLVIIVVTAIICGLKKRKPQGKATNTPSG 562

Query: 518 --WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK 575
             +  K R++S++++ KIT++F +++G+G FG VYHG ++   TQVAVKMLS S+V+GY+
Sbjct: 563 SQFASKQRQYSFNELVKITDDFTRILGRGAFGKVYHGIID--DTQVAVKMLSPSAVRGYE 620

Query: 576 QFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----ANTLTWEA 629
           QF AEV+ +  VHH+NLT+LVGYC+E+ NMGLIYE+MA GNL+E LSG    A  LTWE 
Sbjct: 621 QFLAEVKLLMRVHHRNLTSLVGYCNEENNMGLIYEYMANGNLDEILSGKSSRAKFLTWED 680

Query: 630 RLRIATEAAQGSHSAFDQGCCPHI 653
           RL+IA +AAQG       GC P I
Sbjct: 681 RLQIALDAAQGLE-YLHNGCKPPI 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549706|ref|XP_002515904.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544809|gb|EEF46324.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/675 (50%), Positives = 461/675 (68%), Gaps = 29/675 (4%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FIS+DCG+P ++SY+D  T +N++SD+++I+ G+  +++ E+S+N ++ R    VRSFP+
Sbjct: 30  FISLDCGLPGNTSYSDATTTLNFISDASYIEIGISKSLAPEFSTN-SIFRPLWYVRSFPQ 88

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G RNCY +  +  D ++LIRA FMYGNYDG N  PSF L L  + W SV + + S  V K
Sbjct: 89  GSRNCYNVTLTK-DTEYLIRATFMYGNYDGINQRPSFDLYLGPNKWVSVQILNGSIPVRK 147

Query: 121 EIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWD---VGSTTSEA 177
           EIIH PK+ Y++VCLVNT SGTPFISALELRPLKN TY ++SGSL L+D   + S T++ 
Sbjct: 148 EIIHHPKRKYIHVCLVNTNSGTPFISALELRPLKNGTYVSESGSLALFDRADISSITNQT 207

Query: 178 IRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSF 236
           +RYPDDVYDR WSP+  + W  I T  +      N +QLP T+MR+A  P N+S + +  
Sbjct: 208 VRYPDDVYDRRWSPFHFVEWTDISTTETIDLGKSNSYQLPSTVMRSAGTPRNSS-SPMEV 266

Query: 237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPS 296
                 P  ++Y + HFAE+     NQ+RE +I  NG +WYGP   +  ++TT+ S Y  
Sbjct: 267 TIAAEDPTLKFYAYFHFAEIVKLDANQSREFNITLNGDIWYGPITLHYLYSTTVSSGYAI 326

Query: 297 KGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQ 356
            G    DF I K   STLPP+LNA E+Y   E     T Q+DV A++ IK  Y + +NWQ
Sbjct: 327 SGGT-YDFQIFKVGGSTLPPLLNAVEVYYIVELLQLETKQEDVYAMIKIKSTYKITRNWQ 385

Query: 357 GDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSL 416
           GDPCAP+ Y+W+GL C+Y  +  P IISL+LSSSG++G++     +L SL++LDLSNNSL
Sbjct: 386 GDPCAPQDYVWEGLKCNYSNSASPVIISLDLSSSGLTGDVPPVFANLKSLESLDLSNNSL 445

Query: 417 TGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN-- 474
           TG VP+FLS+L  L+VL+LTGN L G +P  L +R+++GLL LS  GNP+LC + SC+  
Sbjct: 446 TGPVPDFLSQLKSLKVLDLTGNKLTGIIPDDLFKRSQSGLLLLSFGGNPELCASVSCSNN 505

Query: 475 ---KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRK------KGSW---ELKN 522
              K++NN ++VPV AS+ +L V++ AL I+   +RRKQ   +      K ++   E++N
Sbjct: 506 NKKKKKNNNFVVPVVASIAALLVIVAALTIICCCRRRKQQVARNEEADTKETYEPREMRN 565

Query: 523 RKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ 582
           R+F+YS+V K+T NFE V+G+GGFGTVY+GYL     +VAVK+LS SSVQGYK+F+AEV+
Sbjct: 566 RRFTYSEVLKLTKNFESVLGRGGFGTVYYGYL--GDIEVAVKVLSTSSVQGYKEFEAEVK 623

Query: 583 YI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG--ANTLTWEARLRIATEAA 638
            +  VHHKNLTTLVGYCDE  NM LIYE+MA GNL +HLSG   + L+WE RL+IA E A
Sbjct: 624 LLLRVHHKNLTTLVGYCDEGGNMILIYEYMANGNLRQHLSGEHPDILSWEGRLKIALETA 683

Query: 639 QGSHSAFDQGCCPHI 653
           QG       GC P I
Sbjct: 684 QGLE-YLHNGCKPPI 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1321686|emb|CAA66376.1| light repressible receptor protein kinase [Arabidopsis thaliana]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/674 (50%), Positives = 446/674 (66%), Gaps = 26/674 (3%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FISIDCGIP DSSYTD+ T + YVSD  F+++G  ++I S+  +  +LERQF NVRSFPE
Sbjct: 27  FISIDCGIPDDSSYTDEKTNMKYVSDLGFVESGTSHSIVSDLQTT-SLERQFQNVRSFPE 85

Query: 61  GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
           G RNCY ++P  G   K+LIR RFMYGNYDG +  P F L + A++W+SV L + + I+T
Sbjct: 86  GKRNCYDIRPQQGKGFKYLIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMT 145

Query: 120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
           KEII+ P  ++++VCLV+   GTPF+S LE+R LKN TY+T   +L+L   WD G+ T+ 
Sbjct: 146 KEIIYTPPSDHIHVCLVDKNRGTPFLSVLEIRFLKNDTYDTPYEALMLGRRWDFGTATNL 205

Query: 177 AIRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLS 235
            IRY DD YDRIW PY+S   +++ T  +      N ++    +MR+A+ P N S N L 
Sbjct: 206 QIRYKDDFYDRIWMPYKSPYQKTLNTSLTIDETNHNGFRPASIVMRSAIAPGNES-NPLK 264

Query: 236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
           F W    P S++YI++HFAEV   Q N+TRE  IY N  +    F P+  FT T  ++ P
Sbjct: 265 FNWAPDDPRSKFYIYMHFAEVRELQRNETREFDIYINDVILAENFRPFYLFTDTRSTVDP 324

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
             G +  +  + +T  STLPPI+NA EIY   EF    T QQDVDA+  IK KY VKKNW
Sbjct: 325 V-GRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLPTDQQDVDAMTKIKFKYRVKKNW 383

Query: 356 QGDPCAPKVYLWQGLNCSY-DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNN 414
           QGDPC P    W+GL C + D N  PR I+LNLSSSG++G+I     +LTS+  LDLSNN
Sbjct: 384 QGDPCVPVDNSWEGLECLHSDNNTSPRSIALNLSSSGLTGQIDPAFANLTSINKLDLSNN 443

Query: 415 SLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           SLTG VP+FL+ L  L  LNL GN L GS+PA LLE++K+G LSL   GNP LC + SC 
Sbjct: 444 SLTGKVPDFLASLPNLTELNLEGNKLTGSIPAKLLEKSKDGSLSLRFGGNPDLCQSPSCQ 503

Query: 475 KRQNNK--YIVPVAASVVSLSVLLTALAILWNLKRR--------KQGGRKKGSWELKNRK 524
                K  YIVPV AS+  L ++LTALA++W+ K+R        K  G   G  +   R 
Sbjct: 504 TTTKKKIGYIVPVVASLAGLLIVLTALALIWHFKKRSRRGTISNKPLGVNTGPLDTAKRY 563

Query: 525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI 584
           F YS+V  ITNNFE+V+GKGGFG VYHG+L  NG QVAVK+LS  S QGYK+F+AEV+ +
Sbjct: 564 FIYSEVVNITNNFERVLGKGGFGKVYHGFL--NGDQVAVKILSEESTQGYKEFRAEVELL 621

Query: 585 --VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQG 640
             VHH NLT+L+GYC+ED +M LIYE+MA GNL ++LSG ++  L+WE RL+I+ +AAQG
Sbjct: 622 MRVHHTNLTSLIGYCNEDNHMALIYEYMANGNLGDYLSGKSSLILSWEERLQISLDAAQG 681

Query: 641 SHSAFDQGCCPHIC 654
                  GC P I 
Sbjct: 682 LE-YLHYGCKPPIV 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549716|ref|XP_002515909.1| Nodulation receptor kinase precursor, putative [Ricinus communis] gi|223544814|gb|EEF46329.1| Nodulation receptor kinase precursor, putative [Ricinus communis]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 351/689 (50%), Positives = 456/689 (66%), Gaps = 43/689 (6%)

Query: 1   FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
           FIS+DCG+P +++YTD+ T +NY SD++FIDTG+  +++  ++++  L RQ   +RSFPE
Sbjct: 28  FISLDCGLPANTTYTDETTSLNYNSDASFIDTGISKSLAPGFTTDN-LRRQLWYIRSFPE 86

Query: 61  GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVTK 120
           G RNCY L  +  D ++LIRA FMYGNYDG N +P F L +  + W SV + +AS  VT+
Sbjct: 87  GDRNCYNLTLAK-DTEYLIRATFMYGNYDGLNQLPEFDLHIGPNKWVSVKILNASTSVTE 145

Query: 121 EII-HAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW-----DVGSTT 174
           EII  +PK  Y++VCLV   +GTPFISALE RPLKN TY T+SGSL L      DVGS  
Sbjct: 146 EIIIGSPKSKYIHVCLVTKDTGTPFISALETRPLKNGTYVTESGSLGLALFTREDVGSLN 205

Query: 175 SEAIRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINS 233
           +  +RYP+DVYDR W PY   R   I T  +      ND+Q P  +MR+AV   N S + 
Sbjct: 206 NRIVRYPNDVYDRRWFPYHFKRGTDISTTLTVDLDDHNDFQPPSIVMRSAVISINTS-SP 264

Query: 234 LSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSI 293
           L FY    T   + Y ++HFAE+   + NQ+R+ +I  NGK+WYGP  P   +TTT+ S 
Sbjct: 265 LEFYINNDT-TYKLYAYMHFAEIVKLEANQSRQFNISLNGKIWYGPVTPTYLYTTTVYST 323

Query: 294 YPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK 353
             +      +FS++K E S LPP+LNA E+Y   +     T+Q+DV  IM+IK  Y + +
Sbjct: 324 -SAITDGMYEFSLSKVEGSALPPLLNAIELYYVVDLLQPETNQRDVIGIMNIKSTYRISR 382

Query: 354 -NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLS 412
            NWQGDPCAP+ ++W+GL+C Y+    P IISLNLSSSG+ GEI   I +L SL+ LDLS
Sbjct: 383 TNWQGDPCAPEDFVWEGLSCKYNVTSSPVIISLNLSSSGLHGEIAPDIANLKSLEILDLS 442

Query: 413 NNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTAS 472
           NN+LT  VP+FLS+L  L+ LNLTGN L G++P  LL+RA +G L+LSVDGNP+LC + S
Sbjct: 443 NNNLTALVPDFLSQLQSLKFLNLTGNRLNGTIPDDLLKRADSG-LTLSVDGNPELCKSVS 501

Query: 473 CN----KRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGG---------------- 512
           CN    K++N  +IVPV ASV +L V++  L  +W LKRRKQ G                
Sbjct: 502 CNKKKKKKKNTDFIVPVVASVAALLVIIVVLTTIWYLKRRKQKGTYLHKYILAGRTEAEA 561

Query: 513 -RKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV 571
            +     EL  R+F+YSDV KITNNF  V+G+GGFGTVYHGYL+    +VAVKMLS SSV
Sbjct: 562 KKTHEPLELNKRQFTYSDVLKITNNFGSVLGRGGFGTVYHGYLD--DVEVAVKMLSPSSV 619

Query: 572 QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN---TLT 626
           QGYK+F AEV+ +  VHHKNLTTLVGYCDE  NMGLIYE+MA GNL+ HLSG +    L+
Sbjct: 620 QGYKEFHAEVRLLLRVHHKNLTTLVGYCDEGNNMGLIYEYMANGNLKHHLSGCDHPSILS 679

Query: 627 WEARLRIATEAAQGSHSAFDQGCCPHICE 655
           WE RL+IA EAAQG       GC P I  
Sbjct: 680 WEGRLQIALEAAQGL-DYLHNGCKPPIVH 707

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	678
TAIR|locus:2126540	876	AT4G29990 [Arabidopsis thalian	0.954	0.738	0.471	1.1e-153
TAIR|locus:2047675	881	AT2G19210 [Arabidopsis thalian	0.955	0.735	0.467	5.2e-152
TAIR|locus:2017557	894	IOS1 "IMPAIRED OOMYCETE SUSCEP	0.697	0.529	0.433	6.1e-144
TAIR|locus:2059093	876	FRK1 "FLG22-induced receptor-l	0.954	0.738	0.443	1.4e-133
TAIR|locus:2066158	884	AT2G28990 [Arabidopsis thalian	0.705	0.540	0.420	2.9e-133
TAIR|locus:2017647	885	AT1G51820 [Arabidopsis thalian	0.688	0.527	0.403	1.4e-131
TAIR|locus:2195825	865	AT1G51850 [Arabidopsis thalian	0.498	0.390	0.413	2.2e-131
TAIR|locus:2055165	868	AT2G14510 [Arabidopsis thalian	0.939	0.733	0.416	3.6e-128
TAIR|locus:2017572	882	AT1G51790 [Arabidopsis thalian	0.938	0.721	0.411	7.6e-128
TAIR|locus:2059804	892	AT2G04300 [Arabidopsis thalian	0.942	0.716	0.423	9.6e-128

TAIR|locus:2126540 AT4G29990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 317/673 (47%), Positives = 414/673 (61%)

Query:     1 FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
             FISIDCGIP DSSYTD+ T + YVSD  F+++G  ++I S+  +  +LERQF NVRSFPE
Sbjct:    27 FISIDCGIPDDSSYTDEKTNMKYVSDLGFVESGTSHSIVSDLQTT-SLERQFQNVRSFPE 85

Query:    61 GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             G RNCY ++P  G   K+LIR RFMYGNYDG +  P F L + A++W+SV L + + I+T
Sbjct:    86 GKRNCYDIRPQQGKGFKYLIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMT 145

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
             KEII+ P  ++++VCLV+   GTPF+S LE+R LKN TY+T   +L+L   WD G+ T+ 
Sbjct:   146 KEIIYTPPSDHIHVCLVDKNRGTPFLSVLEIRFLKNDTYDTPYEALMLGRRWDFGTATNL 205

Query:   177 AIRYPDDVYDRIWSPYRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSLS 235
              IRY DD YDRIW PY+S   +++ T  +      N ++    +MR+A+ P N S N L 
Sbjct:   206 QIRYKDDFYDRIWMPYKSPYQKTLNTSLTIDETNHNGFRPASIVMRSAIAPGNES-NPLK 264

Query:   236 FYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYP 295
             F W    P S++YI++HFAEV   Q N+TRE  IY N  +    F P+  FT T  ++ P
Sbjct:   265 FNWAPDDPRSKFYIYMHFAEVRELQRNETREFDIYINDVILAENFRPFYLFTDTRSTVDP 324

Query:   296 SKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNW 355
               G +  +  + +T  STLPPI+NA EIY   EF    T QQDVDA+  IK KY VKKNW
Sbjct:   325 V-GRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLPTDQQDVDAMTKIKFKYRVKKNW 383

Query:   356 QGDPCAPKVYLWQGLNCSY-DGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQALDLSNN 414
             QGDPC P    W+GL C + D N  P+                    +LTS+  LDLSNN
Sbjct:   384 QGDPCVPVDNSWEGLECLHSDNNTSPKSIALNLSSSGLTGQIDPAFANLTSINKLDLSNN 443

Query:   415 SLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
             SLTG VP+FL+ L  L  LNL GN L GS+PA LLE++K+G LSL   GNP LC + SC 
Sbjct:   444 SLTGKVPDFLASLPNLTELNLEGNKLTGSIPAKLLEKSKDGSLSLRFGGNPDLCQSPSCQ 503

Query:   475 KRQNNK--YIVPXXXXXXXXXXXXXXXXILWNLXXXXXXXXXXXS--------WELKNRK 524
                  K  YIVP                ++W+                      +   R 
Sbjct:   504 TTTKKKIGYIVPVVASLAGLLIVLTALALIWHFKKRSRRGTISNKPLGVNTGPLDTAKRY 563

Query:   525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI 584
             F YS+V  ITNNFE+V+GKGGFG VYHG+L  NG QVAVK+LS  S QGYK+F+AEV+ +
Sbjct:   564 FIYSEVVNITNNFERVLGKGGFGKVYHGFL--NGDQVAVKILSEESTQGYKEFRAEVELL 621

Query:   585 --VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL--TWEARLRIATEAAQG 640
               VHH NLT+L+GYC+ED +M LIYE+MA GNL ++LSG ++L  +WE RL+I+ +AAQG
Sbjct:   622 MRVHHTNLTSLIGYCNEDNHMALIYEYMANGNLGDYLSGKSSLILSWEERLQISLDAAQG 681

Query:   641 SHSAFDQGCCPHI 653
                    GC P I
Sbjct:   682 LEY-LHYGCKPPI 693

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2047675 AT2G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 315/674 (46%), Positives = 412/674 (61%)

Query:     1 FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
             F+SIDCGIP DSSY D+ T I YVSD+ F+++G I++I  E+ ++ +LE+QF NVRSFPE
Sbjct:    31 FVSIDCGIPEDSSYNDETTDIKYVSDAAFVESGTIHSIDPEFQTS-SLEKQFQNVRSFPE 89

Query:    61 GIRNCYTLKPSSGD-VKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             G RNCY +KP  G   K+LIR RFMYGNYD     P F L L  ++WDSV + +A+ IVT
Sbjct:    90 GNRNCYDVKPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGFNIWDSVTIDNATTIVT 149

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL---WDVGSTTSE 176
             KEIIH  + ++++VCLV+   GTPF+SALE+R LK++TYET   SL+L   WD+G   + 
Sbjct:   150 KEIIHTLRSDHVHVCLVDKNRGTPFLSALEIRLLKSNTYETPYDSLILFKRWDLGGLGAL 209

Query:   177 AIRYPDDVYDRIWSPYRSLRWE--SITRRSDSTFFENDWQLPLTIMRTAVRPANASINSL 234
              +RY DDV+DRIW P R  ++   + +   DS   E  +Q    +M TA  P + S   +
Sbjct:   210 PVRYKDDVFDRIWIPLRFPKYTIFNASLTIDSNNNEG-FQPARFVMNTATSPEDLS-QDI 267

Query:   235 SFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGK-LWYGPFVPYTFFTTTLVSI 293
              F W+   P  +Y++++HFAEV     N+TRE  +  N K +    F P   +T TL   
Sbjct:   268 IFSWEPKDPTWKYFVYMHFAEVVELPSNETREFKVLLNEKEINMSSFSPRYLYTDTLFVQ 327

Query:   294 YPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK 353
              P  G  +++F + +T  STLPPI+NA E Y   EF  S T QQDVDAIM IK KYGVKK
Sbjct:   328 NPVSGP-KLEFRLQQTPRSTLPPIINAIETYRVNEFLQSPTDQQDVDAIMRIKSKYGVKK 386

Query:   354 NWQGDPCAPKVYLWQGLNCSYDGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQALDLSN 413
             +W GDPCAP  Y W+ +NCSY  NE PR                    +LT L  LDLSN
Sbjct:   387 SWLGDPCAPVKYPWKDINCSYVDNESPRIISVNLSSSGLTGEIDAAFSNLTLLHILDLSN 446

Query:   414 NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASC 473
             NSLTG +P+FL  LH L  LNL GN L G++P  LLER+   L+ L +DGNP LC +ASC
Sbjct:   447 NSLTGKIPDFLGNLHNLTELNLEGNKLSGAIPVKLLERSNKKLILLRIDGNPDLCVSASC 506

Query:   474 N----KRQNNKYIVPXXXXXXXXXXXXXXXXI--LWNLXXXXXXXXXXXSWELKNRK--F 525
                  K + N YI+P                +  L+             +  L   K  +
Sbjct:   507 QISDEKTKKNVYIIPLVASVVGVLGLVLAIALFLLYKKRHRRGGSGGVRAGPLDTTKRYY 566

Query:   526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI- 584
              YS+V K+TNNFE+V+G+GGFG VYHG L  N  QVAVK+LS SS QGYK+F+AEV+ + 
Sbjct:   567 KYSEVVKVTNNFERVLGQGGFGKVYHGVL--NDDQVAVKILSESSAQGYKEFRAEVELLL 624

Query:   585 -VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQGS 641
              VHHKNLT L+GYC E   M LIYEFMA G L ++LSG  +  L+WE RL+I+ +AAQG 
Sbjct:   625 RVHHKNLTALIGYCHEGKKMALIYEFMANGTLGDYLSGEKSYVLSWEERLQISLDAAQGL 684

Query:   642 HSAFDQGCCPHICE 655
                 + GC P I +
Sbjct:   685 EYLHN-GCKPPIVQ 697

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017557 IOS1 "IMPAIRED OOMYCETE SUSCEPTIBILITY 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 6.1e-144, Sum P(2) = 6.1e-144
 Identities = 216/498 (43%), Positives = 307/498 (61%)

Query:     1 FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
             FIS+DCG P ++S+ +K T I Y+SD+ FI+TGV  +I   Y +    ++Q  N+RSFP+
Sbjct:    29 FISLDCGSPRETSFREKTTNITYISDANFINTGVGGSIKQGYRTQ--FQQQTWNLRSFPQ 86

Query:    61 GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPS--FSLLLEADVWDSVNLKDASGIV 118
             GIRNCYTL  + GD ++LIRA F++G YD +   PS  F L L  ++W +V   + +   
Sbjct:    87 GIRNCYTLNLTIGD-EYLIRANFLHGGYDDK---PSTQFELYLGPNLWSTVTTTNETEAS 142

Query:   119 TKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTS 175
               E+IH    + + +CLV TG+ TPFISALELR L N+TY T+ GSL  +   DVG+T +
Sbjct:   143 IFEMIHILTTDRLQICLVKTGNATPFISALELRKLMNTTYLTRQGSLQTFIRADVGATVN 202

Query:   176 EAIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPAN--ASINS 233
             +  RY  DV+DR+W+PY    W  I+  + S    ND+Q P   M TA  P +  A++N 
Sbjct:   203 QGYRYGIDVFDRVWTPYNFGNWSQIST-NQSVNINNDYQPPEIAMVTASVPTDPDAAMN- 260

Query:   234 LSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVS- 292
             +S      T   Q+Y+F+HFAE++  + N TRE +I  N K  YGPF P  F T+++ + 
Sbjct:   261 ISLVGVERTV--QFYVFMHFAEIQELKSNDTREFNIMYNNKHIYGPFRPLNFTTSSVFTP 318

Query:   293 --IYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYG 350
               +      + I FS+ +T NSTLPP+LNA EIY     P   T +++VDA+M+IK  YG
Sbjct:   319 TEVVADANGQYI-FSLQRTGNSTLPPLLNAMEIYSVNLLPQQETDRKEVDAMMNIKSAYG 377

Query:   351 VKK-NWQGDPCAPKVYLWQGLNCSYDGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQAL 409
             V K +W+GDPC P  Y W G+NC+Y  NE P+                 +I  LTSL+ L
Sbjct:   378 VNKIDWEGDPCVPLDYKWSGVNCTYVDNETPKIISLDLSTSGLTGEILEFISDLTSLEVL 437

Query:   410 DLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
             DLSNNSLTGSVPEFL+ +  L+++NL+GN L GS+PA LL++ + G ++LS++GN  LC 
Sbjct:   438 DLSNNSLTGSVPEFLANMETLKLINLSGNELNGSIPATLLDKERRGSITLSIEGNTGLCS 497

Query:   470 TASC---NKRQNNKYIVP 484
             + SC    K++ N  I P
Sbjct:   498 STSCATTKKKKKNTVIAP 515

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2059093 FRK1 "FLG22-induced receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 297/670 (44%), Positives = 389/670 (58%)

Query:     1 FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
             FISIDCGIP DSSY D+ TGI YVSDS F+D+G    I++++ S+   +R  LNVRSFP+
Sbjct:    30 FISIDCGIPDDSSYNDETTGIKYVSDSAFVDSGTTKRIAAQFQSSG-FDRHLLNVRSFPQ 88

Query:    61 GIRNCYTLK-PSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
               R+CY +  P     K+LIR RFMYGNYD    +P F L L  + WDSV L DA+ I+ 
Sbjct:    89 SKRSCYDVPTPRGKGFKYLIRTRFMYGNYDDLGRVPEFDLYLGVNFWDSVKLDDATTILN 148

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTSE 176
             KEII  P  + + VC+V+  +GTPF+S LE+R L N+TYET   +L L    D   T   
Sbjct:   149 KEIITIPLLDNVQVCVVDKNAGTPFLSVLEIRLLLNTTYETPYDALTLLRRLDYSKTGKL 208

Query:   177 AIRYPDDVYDRIWSP-YRSLRWESI-TRRSDSTFFENDWQLPLTIMRTAVRPANASINSL 234
               RY DD+YDRIW+P   S  ++ + T  +   F  N +Q   T+M TA    N S+  L
Sbjct:   209 PSRYKDDIYDRIWTPRIVSSEYKILNTSLTVDQFLNNGYQPASTVMSTAETARNESLY-L 267

Query:   235 SFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIY 294
             +  ++   P +++Y+++HFAE+E  + NQTRE SI+ N  +    F      T T V+  
Sbjct:   268 TLSFRPPDPNAKFYVYMHFAEIEVLKSNQTREFSIWLNEDVISPSFKLRYLLTDTFVTPD 327

Query:   295 PSKGSERIDFSINKTENS-TLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK 353
             P  G   I+FS+ +      LPPI+NA E+Y   EF    T  QDVDA+  IK  Y VKK
Sbjct:   328 PVSGIT-INFSLLQPPGEFVLPPIINALEVYQVNEFLQIPTHPQDVDAMRKIKATYRVKK 386

Query:   354 NWQGDPCAPKVYLWQGLNCSYDGNEL-PRXXXXXXXXXXXXXXXXTYIFSLTSLQALDLS 412
             NWQGDPC P  Y W+G++C    N   PR                    +LTS++ LDLS
Sbjct:   387 NWQGDPCVPVDYSWEGIDCIQSDNTTNPRVVSLNISFSELRGQIDPAFSNLTSIRKLDLS 446

Query:   413 NNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTAS 472
              N+LTG +P FL+ L  L  LN+ GN L G VP  L ER+KNG LSL    NP LC + S
Sbjct:   447 GNTLTGEIPAFLANLPNLTELNVEGNKLTGIVPQRLHERSKNGSLSLRFGRNPDLCLSDS 506

Query:   473 CN--KRQN-NKYIVPXXXXXXXXXXXXXXXXILWNLXXXXXXXXXXXSWELKNRK--FSY 527
             C+  K++N N YI+P                                +  LK  K  F Y
Sbjct:   507 CSNTKKKNKNGYIIPLVVVGIIVVLLTALALFRRFKKKQQRGTLGERNGPLKTAKRYFKY 566

Query:   528 SDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V 585
             S+V  ITNNFE+VIGKGGFG VYHG +  NG QVAVK+LS  S QGYK+F+AEV  +  V
Sbjct:   567 SEVVNITNNFERVIGKGGFGKVYHGVI--NGEQVAVKVLSEESAQGYKEFRAEVDLLMRV 624

Query:   586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWEARLRIATEAAQGSHS 643
             HH NLT+LVGYC+E  +M LIYE+MA  NL ++L+G  +  L+WE RL+I+ +AAQG   
Sbjct:   625 HHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSFILSWEERLKISLDAAQGLEY 684

Query:   644 AFDQGCCPHI 653
               + GC P I
Sbjct:   685 LHN-GCKPPI 693

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=RCA;IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2066158 AT2G28990 [Arabidopsis thaliana (taxid:3702)]

 Score = 970 (346.5 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
 Identities = 206/490 (42%), Positives = 288/490 (58%)

Query:     1 FISIDCGIPHDSS-YTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
             FIS+DCG+P D S Y D   G+ + SDSTFI TG I+++  + + N  L +Q+L +R FP
Sbjct:    25 FISLDCGLPSDESPYDDSFNGLTFTSDSTFIQTGKIDSVDKDLNIN--LSKQYLTLRYFP 82

Query:    60 EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             EG RNCY+L    G   +LI   F+YGNYDG N  P+F + L  + W  ++L        
Sbjct:    83 EGKRNCYSLDVKRGTT-YLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLDGEKEGTR 141

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL-WDVGSTTSEA- 177
             +EIIH  + N + +CLV TG   P ISA+E+RPL+N+TY TQSGSL++ + V  + S+A 
Sbjct:   142 EEIIHKARSNSLDICLVKTGETLPIISAIEIRPLRNNTYVTQSGSLMMSFRVYLSNSDAS 201

Query:   178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFY 237
             IRY DDV+DRIWSP+       IT   +     N +++P  I++TA  P NAS   L   
Sbjct:   202 IRYADDVHDRIWSPFNGSSHTHITTDLNINN-SNAYEIPKNILQTAAIPRNASA-PLIIT 259

Query:   238 WKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSK 297
             W      ++ Y+++HFAE++  + N+TR+  +   G   +  F P      TL +  P K
Sbjct:   260 WDPLPINAEVYLYMHFAEIQTLEANETRQFDVILRGNFNHSGFSPTKLKVFTLYTEEPMK 319

Query:   298 -GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK-NW 355
              GSE     + KT NSTLPP++NA E Y   EF    TS  DVDAI +IK  Y + K  W
Sbjct:   320 CGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQLETSLSDVDAIKNIKNTYKLNKITW 379

Query:   356 QGDPCAPKVYLWQGLNCSY-DGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQALDLSNN 414
             QGDPC P+   W+ + C+Y DG+  P                   + + T LQ LDLSNN
Sbjct:   380 QGDPCLPQDLSWESIRCTYVDGSTSPTIISLDLSKSGLNGSIPQILQNFTQLQELDLSNN 439

Query:   415 SLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
             SLTG VP FL+ +  L ++NL+GNNL GSVP  LL++ K GL+ L ++GNP LC ++ CN
Sbjct:   440 SLTGPVPIFLANMKTLSLINLSGNNLSGSVPQALLDKEKEGLV-LKLEGNPDLCKSSFCN 498

Query:   475 KRQNNKYIVP 484
               + NK+++P
Sbjct:   499 TEKKNKFLLP 508

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017647 AT1G51820 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
 Identities = 196/486 (40%), Positives = 282/486 (58%)

Query:     1 FISIDCGIPH-DSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
             FIS+DCG+   +S Y    TG+ Y SD+  + +G    ++ E+     +++  L +R FP
Sbjct:    26 FISVDCGLSLLESPYDAPQTGLTYTSDADLVASGKTGRLAKEFEP--LVDKPTLTLRYFP 83

Query:    60 EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             EG+RNCY L  +S D  +LI+A F+YGNYDG N+ P+F+L L  ++W +V+  D      
Sbjct:    84 EGVRNCYNLNVTS-DTNYLIKATFVYGNYDGLNVGPNFNLYLGPNLWTTVSSNDT----I 138

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLWDVG--STTSEA 177
             +EII   + N + VCLV TG   PFI+ LELRP+K + Y TQSGSL     G  S +S  
Sbjct:   139 EEIILVTRSNSLQVCLVKTGISIPFINMLELRPMKKNMYVTQSGSLKYLFRGYISNSSTR 198

Query:   178 IRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFY 237
             IR+PDDVYDR W P     W  +T           ++LP ++M  A  P  A+ ++L+  
Sbjct:   199 IRFPDDVYDRKWYPLFDDSWTQVTTNLKVNT-SITYELPQSVMAKAATPIKAN-DTLNIT 256

Query:   238 WKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSK 297
             W    P +Q+Y ++H AE++  + N+TRE ++  NG+  +GPF P    T ++V + P +
Sbjct:   257 WTVEPPTTQFYSYVHIAEIQALRANETREFNVTLNGEYTFGPFSPIPLKTASIVDLSPGQ 316

Query:   298 -GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK-NW 355
                 R    + KT  STLPP+LNA E +   +FP   T++ DV  I +++  YG+ + +W
Sbjct:   317 CDGGRCILQVVKTLKSTLPPLLNAIEAFTVIDFPQMETNENDVAGIKNVQGTYGLSRISW 376

Query:   356 QGDPCAPKVYLWQGLNCSYDGNELPRXXXXXXXXXXXXXXXXTY-IFSLTSLQALDLSNN 414
             QGDPC PK  LW GLNC       P                 T  I +LT LQ LDLS+N
Sbjct:   377 QGDPCVPKQLLWDGLNCKNSDISTPPIITSLDLSSSGLTGIITQAIKNLTHLQILDLSDN 436

Query:   415 SLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPK-LCHTASC 473
             +LTG VPEFL+++  L V+NL+GNNL GSVP  LL+  K G+  L+V+GNP  LC T SC
Sbjct:   437 NLTGEVPEFLADIKSLLVINLSGNNLSGSVPPSLLQ--KKGM-KLNVEGNPHILCTTGSC 493

Query:   474 NKRQNN 479
              K++ +
Sbjct:   494 VKKKED 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2195825 AT1G51850 [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
 Identities = 145/351 (41%), Positives = 204/351 (58%)

Query:   133 VCLVNTGSGTPFISALELRPLKNSTYETQSGSL-LLWDVG-STTSEAIRYPDDVYDRIWS 190
             VCL+ TG   PFI+ LELRP+K + Y TQ  SL  L+ V  S +S  IR+PDDVYDR W 
Sbjct:   132 VCLIKTGISIPFINVLELRPMKKNMYVTQGESLNYLFRVYISNSSTRIRFPDDVYDRKWY 191

Query:   191 PYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPESQYYIF 250
             PY    W  +T   D       ++LP ++M  A  P  A+ ++L+  W    P +++Y +
Sbjct:   192 PYFDNSWTQVTTTLDVNT-SLTYELPQSVMAKAATPIKAN-DTLNITWTVEPPTTKFYSY 249

Query:   251 LHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSK--GSERIDFSINK 308
             +HFAE++  + N  RE ++  NG   YGP+ P    T T+    P +  G   +   + K
Sbjct:   250 MHFAELQTLRANDAREFNVTMNGIYTYGPYSPKPLKTETIYDKIPEQCDGGACL-LQVVK 308

Query:   309 TENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK-NWQGDPCAPKVYLW 367
             T  STLPP+LNA E +   +FP   T+  DVDAI +++  YG+ + +WQGDPC PK++LW
Sbjct:   309 TLKSTLPPLLNAIEAFTVIDFPQMETNGDDVDAIKNVQDTYGISRISWQGDPCVPKLFLW 368

Query:   368 QGLNCSYDGNEL-PRXXXXXXXXXXXXXXXXTYIFSLTSLQALDLSNNSLTGSVPEFLSE 426
              GLNC+   N   P                   I +LT+LQ LDLS+N+LTG +P+FL +
Sbjct:   369 DGLNCNNSDNSTSPIITSLDLSSSGLTGSITQAIQNLTNLQELDLSDNNLTGEIPDFLGD 428

Query:   427 LHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTA-SCNKR 476
             +  L V+NL+GNNL GSVP  LL+  K G+  L+V+GNP L  TA SC K+
Sbjct:   429 IKSLLVINLSGNNLSGSVPPSLLQ--KKGM-KLNVEGNPHLLCTADSCVKK 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2055165 AT2G14510 [Arabidopsis thaliana (taxid:3702)]

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 278/667 (41%), Positives = 383/667 (57%)

Query:     1 FISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPE 60
             FIS+DCG+P   SY +  + + ++SD  FI  G   NI +   +N  + + F  +R FP+
Sbjct:    29 FISLDCGLPSKESYIEPSSNLTFISDVNFIRGGKTGNIQNNSRTN-FIFKPFKVLRYFPD 87

Query:    61 GIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVN--LKDASGIV 118
             GIRNCY+L    G  K+LIR  F YGNYDG N  P F L L  ++W SV+  + D    V
Sbjct:    88 GIRNCYSLSVKQG-TKYLIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGDGV 146

Query:   119 TKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL--LLWDVGSTTSE 176
              +EI+H  + N + +CLV TG+ TP ISA+ELRPL+  TY  ++GSL  +     + + E
Sbjct:   147 VEEIVHVTRSNILDICLVKTGTSTPMISAIELRPLRYDTYTARTGSLKSMAHFYFTNSDE 206

Query:   177 AIRYPDDVYDRIWSPYRSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSLSF 236
             AIRYP+DVYDR+W PY    W  I    + + F + +  P  +++TA  P N S   L+F
Sbjct:   207 AIRYPEDVYDRVWMPYSQPEWTQINTTRNVSGFSDGYNPPQGVIQTASIPTNGS-EPLTF 265

Query:   237 YWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPS 296
              W   + + + Y +L FAE++  + N+TRE  I +NG + Y  + P+ F   TL +  P 
Sbjct:   266 TWNLESSDDETYAYLFFAEIQQLKVNETREFKILANG-VDYIDYTPWKFEARTLSNPAPL 324

Query:   297 K---GSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK 353
             K   G  R+  S  KT  STLPP++NA EI+   +FP S T+  +V AI  I+  Y + +
Sbjct:   325 KCEGGVCRVQLS--KTPKSTLPPLMNAIEIFSVIQFPQSDTNTDEVIAIKKIQSTYQLSR 382

Query:   354 -NWQGDPCAPKVYLWQGLNCSY-DGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQALDL 411
              +WQGDPC PK + W G++C+  D +  PR                  I +LT L+ LDL
Sbjct:   383 ISWQGDPCVPKQFSWMGVSCNVIDISTPPRIISLDLSLSGLTGVISPSIQNLTMLRELDL 442

Query:   412 SNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTA 471
             SNN+LTG VPEFL+ +  L V++L GNNL GSVP  L +R KN  L L VD  P +    
Sbjct:   443 SNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQALQDREKNDGLKLFVD--PNITRRG 500

Query:   472 SCNKRQNNKYIVPXXXXXXXXXXXXXXXXILWNLXXXXXXXXXXX--SWELKNRKFSYSD 529
                K Q   ++V                 +++               S E+KNR+F YS+
Sbjct:   501 ---KHQPKSWLVAIVASISCVAVTIIVLVLIFIFRRRKSSTRKVIRPSLEMKNRRFKYSE 557

Query:   530 VAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHH 587
             V ++TNNFE V+GKGGFG VYHG+L  N  QVAVK+LS SS QGYK+F+ EV+ +  VHH
Sbjct:   558 VKEMTNNFEVVLGKGGFGVVYHGFL--NNEQVAVKVLSQSSTQGYKEFKTEVELLLRVHH 615

Query:   588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG---ANTLTWEARLRIATEAAQGSHSA 644
              NL +LVGYCDE  ++ LIYEFM  GNL+EHLSG    + L W +RL+IA E+A G    
Sbjct:   616 VNLVSLVGYCDEGIDLALIYEFMENGNLKEHLSGKRGGSVLNWSSRLKIAIESALGIEY- 674

Query:   645 FDQGCCP 651
                GC P
Sbjct:   675 LHIGCQP 681

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017572 AT1G51790 [Arabidopsis thaliana (taxid:3702)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 282/685 (41%), Positives = 400/685 (58%)

Query:     1 FISIDCGI-PHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
             FISIDCG+ P +SSYT+  T I YVSDS++ DTG    ++ E   N  +++   +VRSFP
Sbjct:    29 FISIDCGLQPENSSYTETSTDIKYVSDSSYTDTGTSYFVAPENRQN--MKQSMWSVRSFP 86

Query:    60 EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKDASGIVT 119
             EGIRNCYT+  +S   K+LIRA FMYGNYD +N IP F L L  + WD+V L      V+
Sbjct:    87 EGIRNCYTIAVNSS-TKYLIRADFMYGNYDSRNEIPGFDLHLGPNKWDTVELVSPLQTVS 145

Query:   120 KEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLLW---DVGSTTSE 176
             KEII+    + + VCLVNTG+GTPFIS LELR L NS+Y  QS SL L+   D GSTT+ 
Sbjct:   146 KEIIYYVLTDTIQVCLVNTGNGTPFISVLELRQLPNSSYAAQSESLQLFQRLDFGSTTNL 205

Query:   177 AIRYPDDVYDRIWSPY-----RSLRWESITRRSDSTFFENDWQLPLTIMRTAVRPANASI 231
              +RYP+DV+DRIW P      + L   S +  S+ST    +++LP  +MRT + P N   
Sbjct:   206 TVRYPNDVFDRIWFPATPNGTKPLSDPSTSLTSNST---GNFRLPQVVMRTGIVPDNPR- 261

Query:   232 NSLSFYWKTSTPESQYYIFLHFAEVEGRQEN--QTREMSIYSNGKLWYGPFVPYTFFTTT 289
               + F W    P  +++ +L+F E++       +TRE  I  NGK +  P     F T  
Sbjct:   262 GFVDFGWIPDDPSLEFFFYLYFTELQQPNSGTVETREFVILLNGKSFGEPLSLNYFRTLA 321

Query:   290 LVSIYPSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKY 349
             L +  P K +E   FS+ +T++S+LPP++NA E Y   + P S T   D+ A+ +IK  Y
Sbjct:   322 LFTSNPLK-AESFQFSLRQTQSSSLPPLINAMETYFVNKLPQSSTDPNDLSAMRNIKSAY 380

Query:   350 GVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQAL 409
              VK+NW+GD C P+ Y W+GLNCS++G  +PR                + I  L+ LQ L
Sbjct:   381 KVKRNWEGDVCVPQAYTWEGLNCSFNGTNMPRVIALNLSSAGLTGEITSDISRLSQLQIL 440

Query:   410 DLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
             DLSNN+L+G +VP FL++L FLRVL+L  N L G +P+ L+ER        S  GNP +C
Sbjct:   441 DLSNNNLSGPAVPAFLAQLQFLRVLHLANNQLSGPIPSSLIERLD------SFSGNPSIC 494

Query:   469 HTASC-----NKRQNNK---YIVPXXXXXXXXXXXXXXXXILWNLXXXXXXX------XX 514
                +C     N+ + NK   +++P                 ++ +               
Sbjct:   495 SANACEEVSQNRSKKNKLPSFVIPLVASLAGLLLLFIISAAIFLILMRKKKQDYGGNETA 554

Query:   515 XXSWELK--NRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ 572
               +++L+  NRKF+Y+++  ITN F++  GK GFG  Y G L+  G +V VK++S+ S Q
Sbjct:   555 VDAFDLEPSNRKFTYAEIVNITNGFDRDQGKVGFGRNYLGKLD--GKEVTVKLVSSLSSQ 612

Query:   573 GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT--LTWE 628
             GYKQ +AEV+++  +HHKNL T++GYC+E   M +IYE+MA GNL++H+S  +T   +WE
Sbjct:   613 GYKQLRAEVKHLFRIHHKNLITMLGYCNEGDKMAVIYEYMANGNLKQHISENSTTVFSWE 672

Query:   629 ARLRIATEAAQGSHSAFDQGCCPHI 653
              RL IA + AQG       GC P I
Sbjct:   673 DRLGIAVDVAQGLEY-LHTGCKPPI 696

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2059804 AT2G04300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 289/682 (42%), Positives = 391/682 (57%)

Query:     1 FISIDCGI-PHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP 59
             FIS+DCG+ P++  Y D  T + Y +D+ F+ +G    I  E  S  T  +  L +R FP
Sbjct:    32 FISLDCGLSPNEPPYVDAATDLTYTTDNDFVQSGKTGTIDKELES--TYNKPILQLRYFP 89

Query:    60 EGIRNCYTLKPSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNLKD--ASGI 117
             EG+RNCYTL  + G   +LIRA F+YGNYDG N    F L L  ++W +VN      +G+
Sbjct:    90 EGVRNCYTLNVTLG-TNYLIRASFVYGNYDGLNKELEFDLYLGPNLWANVNTAVYLMNGV 148

Query:   118 VTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSL--LLWDVGSTTS 175
              T+EIIH+ K   + VCL+ TG   P I++LELRPL N TY TQSGSL  L  +  ST+ 
Sbjct:   149 TTEEIIHSTKSKVLQVCLIKTGESIPIINSLELRPLINDTYNTQSGSLKYLFRNYFSTSR 208

Query:   176 EAIRYPDDVYDRIWSPYRSL-RWESITRRSDSTFFENDWQLPLTIMRTAVRPANASINSL 234
               IRYP+DV DR W P+     W  +T   +     N +  P  +M +A  P + +    
Sbjct:   209 RIIRYPNDVNDRHWYPFFDEDAWTELTTNLNVNS-SNGYDPPKFVMASASTPISKNA-PF 266

Query:   235 SFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIY 294
             +F W      +++Y ++HFA+++  Q N+TRE  +  NG L    + P TF T T+  I 
Sbjct:   267 NFTWSLIPSTAKFYSYMHFADIQTLQANETREFDMMLNGNLALERYRPKTFATGTIYFIK 326

Query:   295 PS--KGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVK 352
             P   +G + I   + KT  STLPP+ +A E++   +FP   T+Q DV AI +I+  YGV 
Sbjct:   327 PQICEGGQCI-IELLKTSKSTLPPLCSALEVFTVIDFPELETNQDDVIAIKNIQNTYGVS 385

Query:   353 K-NWQGDPCAPKVYLWQGLNC--SYDGNELPRXXXXXXXXXXXXXXXXTYIFSLTSLQAL 409
             K +WQGDPC PK ++W GLNC  SY     P                 + I +LT LQ L
Sbjct:   386 KTSWQGDPCVPKRFMWDGLNCNNSYISTP-PTITFLNLSSSHLTGIIASAIQNLTHLQNL 444

Query:   410 DLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKL-C 468
             DLSNN+LTG VPEFL+ L  L V+NL+GNNL GSVP  LL+  K GL  L+++GN  L C
Sbjct:   445 DLSNNNLTGGVPEFLAGLKSLLVINLSGNNLSGSVPQTLLQ--KKGL-KLNLEGNIYLNC 501

Query:   469 HTASC-----N---KRQNNKYIVPXXXXXXXXXXXXXXXXILWNLXXXXXXXXXXXSWEL 520
                SC     N   K++N   +V                 +++             S  L
Sbjct:   502 PDGSCVSKDGNGGAKKKNVVVLVVVSIALVVVLGSALALFLVFRKRKTPRNEVSRTSRSL 561

Query:   521 ------KNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY 574
                   KNR+F+YS+V K+TNNFEK++GKGGFG VYHG +  +  QVAVKMLS SS QGY
Sbjct:   562 DPTITTKNRRFTYSEVVKMTNNFEKILGKGGFGMVYHGTVN-DAEQVAVKMLSPSSSQGY 620

Query:   575 KQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL---SGANTLTWEA 629
             K+F+AEV+ +  VHHKNL  LVGYCDE  N+ LIYE+MAKG+L+EH+    G + L W+ 
Sbjct:   621 KEFKAEVELLLRVHHKNLVGLVGYCDEGENLSLIYEYMAKGDLKEHMLGNQGVSILDWKT 680

Query:   630 RLRIATEAAQGSHSAFDQGCCP 651
             RL+I  E+AQG     + GC P
Sbjct:   681 RLKIVAESAQGLEYLHN-GCKP 701

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	678
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	1e-116
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-19
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-18
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	7e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	9e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-14
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-12
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-11
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-09
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-07
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-07
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	4e-07
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	5e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-07
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	6e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	7e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	6e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	6e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	9e-06
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	9e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	4e-05
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	4e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-04
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-04
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-04
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-04
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	5e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	8e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.001
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.001
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.001
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.001
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	0.002
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.002
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	0.002
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	0.002
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	0.002
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.002
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.002
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.002
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.003
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	0.003
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	0.004
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.004

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  352 bits (904), Expect = e-116
 Identities = 158/339 (46%), Positives = 199/339 (58%), Gaps = 24/339 (7%)

Query: 4   IDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFPEGIR 63
           IDCG+P + SYTD  TGI +VSD+ FIDTG   NIS E SS+  L + +  +RSFP+G R
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSS-FLSKPYKTLRSFPDGKR 59

Query: 64  NCYTLKP-SSGDVKFLIRARFMYGNYDGQNII---PSFSLLLEADVWDSVNLKDASG-IV 118
           NCYTL        K+LIRA F+YGNYDG N +   PSF L L  ++W +VNL + SG  V
Sbjct: 60  NCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNLWTTVNLSNDSGDSV 119

Query: 119 TKE-IIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL-----WDVGS 172
            KE IIH  K + + VCLVNTG+GTPFISALELRPL +S Y +  GS  L      + G 
Sbjct: 120 VKEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSSGGSQALKLVARLNFGG 179

Query: 173 TTSEAIRYPDDVYDRIWSPYR-SLRWESI--TRRSDSTFFENDWQLPLTIMRTAVRPANA 229
           +    IRYPDDVYDRIW P+  S  W  I  +   D +     +  P  +++TAV P NA
Sbjct: 180 SE-GTIRYPDDVYDRIWEPFFSSPGWSQISTSLSVDISSNNAPYIPPSAVLQTAVTPTNA 238

Query: 230 SINSLSFYWKTSTPESQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTT 289
           S   L+F W    P  +YY++LHFAE+   Q  +TRE  IY NGK  YG   P    T T
Sbjct: 239 SAP-LNFTWDLVDPNFEYYVYLHFAEI---QSLETREFDIYINGKTVYGDVSPKYLGTDT 294

Query: 290 L----VSIYPSKGSERIDFSINKTENSTLPPILNAEEIY 324
                       G   ++ S+  T  STLPP+LNA EI+
Sbjct: 295 GALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIF 333

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  126 bits (317), Expect = 3e-30
 Identities = 128/529 (24%), Positives = 203/529 (38%), Gaps = 102/529 (19%)

Query: 55  VRSFP--EGIRNCYTLK--PSSGDVKFLIRARFMYGNYDGQNIIPSFSLLLEADVWDSVN 110
           +R FP  +G  NCY +   P      + +R  F        +  P F + +E     S+ 
Sbjct: 72  LRYFPLSDGPENCYNINRVPKG---HYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLK 128

Query: 111 L---KDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKNSTYETQSGSLLL 167
                    +  + ++         +C  +TG G P I ++E+  + +  Y         
Sbjct: 129 SGWSSHDEQVFAEALVFL-TDGSASICFHSTGHGDPAILSIEILQVDDKAYNFGPS---- 183

Query: 168 WDVG---------STTSEAIRYPDDVY------DRIWSPYRSLRWESITRRSDSTFFEND 212
           W  G         S  +   ++ +D        DR W+  ++    S    S     +  
Sbjct: 184 WGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKA 243

Query: 213 WQLPLTIMRTAVRPANASIN---SLSFYWKTSTPESQYYIFLHFAEVEG--RQENQTREM 267
              P     +  + A  S +    LS Y     P   Y ++LHFAE++     E + R  
Sbjct: 244 SNAPNFYPESLYQSALVSTDTQPDLS-YTMDVDPNRNYSVWLHFAEIDNSITAEGK-RVF 301

Query: 268 SIYSNGKLWY----------GPFVPYTFFTTTLVS-------IYPSKGSERIDFSINKTE 310
            +  NG   +            +       T  VS       + P KG+  I   IN  E
Sbjct: 302 DVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHAI---INAIE 358

Query: 311 NSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGV--KKNWQGDPCAPKVYLWQ 368
                      EI  A+    S T  ++V A+ ++K   G+  +  W GDPC P+ + W 
Sbjct: 359 ---------VFEIITAE----SKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWS 405

Query: 369 GLNCSYD----------------------GNELPR---IISLNLSSSGISGEIITYIFSL 403
           G +C +D                       N++ +   + S+NLS + I G I   + S+
Sbjct: 406 GADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 404 TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDG 463
           TSL+ LDLS NS  GS+PE L +L  LR+LNL GN+L G VPA L  R  +   S +   
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR-ASFNFTD 524

Query: 464 NPKLCHTA---SCNKRQNNKYIVPVAASVVSLSVLLTALAILWNLKRRK 509
           N  LC      +C    +    + +A  V    + L   A+ W  KRR+
Sbjct: 525 NAGLCGIPGLRACGPHLSVGAKIGIAFGVSVAFLFLVICAMCW-WKRRQ 572

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.1 bits (226), Expect = 8e-19
 Identities = 83/301 (27%), Positives = 127/301 (42%), Gaps = 55/301 (18%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  ++ L LS + +SGEI   + S   L +LDLS+N L+G +P   SE+  L  L+L+ N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 439 NLEGSVPAGL--------LERAKN---GLL----------SLSVDGNPKLC--HTAS--- 472
            L G +P  L        +  + N   G L          + +V GN  LC   T S   
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLP 617

Query: 473 -CNK-RQNNKYIVPVAASVVSLSVLLTALAILWNLKRRKQGGRKK-----GSWELK--NR 523
            C + R+   +   +  ++ +  VL         ++ R     K+     G+WEL+  + 
Sbjct: 618 PCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDS 677

Query: 524 KFSYSDVAK---ITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVK------MLSASSVQGY 574
           K S S        +   E VI +G  G  Y G    NG Q  VK       + +S +   
Sbjct: 678 KVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADM 737

Query: 575 KQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIA 634
            + Q        H N+  L+G C  +    LI+E++   NL E L     L+WE R +IA
Sbjct: 738 GKLQ--------HPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN---LSWERRRKIA 786

Query: 635 T 635
            
Sbjct: 787 I 787

Length = 968

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 83.3 bits (207), Expect = 8e-18
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQ-FQAEVQYI--VHHKN 589
             K +G+G FG VY G L    E   T+VAVK L   + +  ++ F  E   +  + H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPN 62

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +  L+G C +   + ++ E+M  G+L + L      LT +  L++A + A+G
Sbjct: 63  IVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG 114

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 80.7 bits (200), Expect = 7e-17
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)

Query: 539 KVIGKGGFGTVYHGYLEFNG---TQVAVKML--SASSVQGYKQFQAE--VQYIVHHKNLT 591
           K +G+G FG VY G L+      T+VAVK L   AS  +  K F  E  V   + H N+ 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEE-RKDFLKEARVMKKLGHPNVV 59

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHL---------SGANTLTWEARLRIATEAAQG 640
            L+G C E+  + L+ E+M  G+L ++L            +TL+ +  L  A + A+G
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG 117

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 80.3 bits (199), Expect = 9e-17
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG----TQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKN 589
             K +G+G FG VY G L+  G     +VAVK L    S Q  ++F  E + +  + H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +  L+G C E+  + ++ E+M  G+L ++L  +    L+    L  A + A+G
Sbjct: 63  IVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARG 115

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSA-SSVQGYKQFQAEVQYI--VHHKN 589
             K +G+G FG VY G L+  G     +VAVK L   +S Q  ++F  E + +  + H N
Sbjct: 3   LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +  L+G C E+  + ++ E+M  G+L  +L      L+    L  A + A+G
Sbjct: 63  VVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARG 114

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ-FQAEVQYI--VHHKNLTTLVGYC 597
           +G+GGFGTVY    +  G +VA+K++         +    E++ +  ++H N+  L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 598 DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +++ ++ L+ E+   G+L++ L      L+ +  LRI  +  +G
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEG 104

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 9e-14
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 20/134 (14%)

Query: 317 ILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDG 376
           +L+AEE+ L   F SS+    D    +S         NW     +  V LWQG+ C    
Sbjct: 25  MLHAEELELLLSFKSSI---NDPLKYLS---------NWNS---SADVCLWQGITC---- 65

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF-LRVLNL 435
           N   R++S++LS   ISG+I + IF L  +Q ++LSNN L+G +P+ +      LR LNL
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 436 TGNNLEGSVPAGLL 449
           + NN  GS+P G +
Sbjct: 126 SNNNFTGSIPRGSI 139

Length = 968

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHHKNLTTL 593
             + +G+G FG VY    +  G  VA+K++    ++   ++   E++ +  + H N+  L
Sbjct: 3   ILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRL 62

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT 626
               +++  + L+ E+   G+L + L     L+
Sbjct: 63  YDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLS 95

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTT 592
             + +G G FGTVY    +  G  VAVK+L   S   +  +  + E++ +  + H N+  
Sbjct: 3   LLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVR 62

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
           L+   ++  ++ L+ E+   G+L ++LS    L+ +   +IA +  +G
Sbjct: 63  LIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRG 110

Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLS--ASSVQGYKQFQAE--VQYIVHHKNLTTLVGY 596
           IGKG FG V  G  ++ G +VAVK L   +++ Q    F AE  V   + H NL  L+G 
Sbjct: 14  IGKGEFGDVMLG--DYRGQKVAVKCLKDDSTAAQ---AFLAEASVMTTLRHPNLVQLLGV 68

Query: 597 CDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
             +   + ++ E+MAKG+L ++L   G   +T   +L  A +  +G
Sbjct: 69  VLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEG 114

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF 577
           WE    +F+           E+ +G G FG V+ G L  N  +VA+K+L +  +   + F
Sbjct: 1   WERPREEFT----------LERKLGSGYFGEVWEG-LWKNRVRVAIKILKSDDLLKQQDF 49

Query: 578 QAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN--TLTWEARLRI 633
           Q EVQ +  + HK+L +L   C     + +I E M KG+L   L       L   + + +
Sbjct: 50  QKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDM 109

Query: 634 ATEAAQG 640
           A + A+G
Sbjct: 110 ACQVAEG 116

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 31/84 (36%), Positives = 48/84 (57%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++ISL+LS + +SGEI   +  L +L+ L L +N+ TG +P  L+ L  L+VL L  N
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 439 NLEGSVPAGLLERAKNGLLSLSVD 462
              G +P  L +     +L LS +
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 72

Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN--TLTWEARLRIATEAAQG 640
            +    +I EFM  GNL ++L   N   +     L +AT+ +  
Sbjct: 73  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSA 116

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 8e-09
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV 444
           L L  + +SG I   IFSL  L +LDLS+NSL+G +PE + +L  L +L+L  NN  G +
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 445 PAGL 448
           P  L
Sbjct: 325 PVAL 328

Length = 968

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 535 NNFEKV--IGKGGFGTVYHG-------YLEFNGTQVAVKML-SASSVQGYKQFQAEVQYI 584
           NN E V  IG+G FG V+         Y  F  T VAVKML   +S      FQ E   +
Sbjct: 5   NNIEYVRDIGQGAFGRVFQARAPGLLPYEPF--TMVAVKMLKEEASADMQADFQREAALM 62

Query: 585 VH--HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSH 642
               H N+  L+G C     M L++E+MA G+L E L    +   +  L  +T +A+   
Sbjct: 63  AEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR-HRSPRAQCSLSHSTSSARKCG 121

Query: 643 SAFDQGCCPH 652
                  C  
Sbjct: 122 LNPLPLSCTE 131

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHK 588
           F + +G+G FG VY G L       + T VA+K L  +   +  ++F+ E + +  + H 
Sbjct: 9   FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHP 68

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           N+  L+G C ++    +++E++A G+L E L
Sbjct: 69  NIVCLLGVCTKEQPTCMLFEYLAHGDLHEFL 99

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVK--MLSASSVQGYKQFQAEVQY--IVHHKNLTTLV 594
           +++G+G FG+VY    +  G  +AVK   LS  S +  +  + E++    + H N   +V
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN---IV 62

Query: 595 GY----CDEDTNMGLIY-EFMAKGNLEEHL 619
            Y     DE+ N   I+ E+++ G+L   L
Sbjct: 63  RYYGSERDEEKNTLNIFLEYVSGGSLSSLL 92

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFN----GTQVAVKMLSASSV-QGYKQFQAEVQYI--VHHKN 589
           F K +G+G FG V     +      G QVAVK L+ S   Q    F+ E++ +  + H+N
Sbjct: 8   FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN 67

Query: 590 LTTLVGYCDED--TNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQG 640
           +    G C++    ++ LI E++  G+L ++L    + +  +  L  +++  +G
Sbjct: 68  IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKG 121

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           +P + +L+LS++ +SGEI   I S +SL+ LDL  N L G +P  L+ L  L  L L  N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 439 NLEGSVPAGL 448
            L G +P  L
Sbjct: 199 QLVGQIPREL 208

Length = 968

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ-F--QAEVQYIVHHKNLTTLVGYC 597
           IGKG FG VY G L+   T+VAVK   ++     K+ F  +AE+     H N+  L+G C
Sbjct: 3   IGKGNFGDVYKGVLK-GNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 598 DEDTNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPH 652
            +   + ++ E +  G+L   L    N LT +  L+++ +AA G     +   C H
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGM-EYLESKNCIH 116

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 539 KVIGKGGFGTVYHG--YLEFNGTQVAVKMLSASS-VQGYKQFQAEVQ--YIVHHKNLTTL 593
             IG G FG V  G  +   +  +V VK L AS+       F  EVQ    ++H N+   
Sbjct: 1   DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQC 60

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +G C E     L+ EF   G+L+ +L
Sbjct: 61  LGQCIESIPYLLVLEFCPLGDLKNYL 86

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 22/126 (17%)

Query: 537 FEKVIGKGGFGTVY-----HGYLEFNGTQVAVKMLS-ASSVQGYKQFQAEVQYI--VHHK 588
            ++ +G+G FG V+     H   E +   VAVK L   +S    K F+ E + +    H+
Sbjct: 9   LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHE 68

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--------------SGANTLTWEARLRIA 634
           N+    G C E     +++E+M  G+L + L              S    LT    L+IA
Sbjct: 69  NIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIA 128

Query: 635 TEAAQG 640
            + A G
Sbjct: 129 VQIASG 134

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 22/128 (17%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQV--AVKMLSA-SSVQGYKQFQAEVQYIV---HHKNL 590
           FE VIG+G FG V    ++ +G ++  A+KML   +S   ++ F  E++ +    HH N+
Sbjct: 6   FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNI 65

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLRIA 634
             L+G C+    + +  E+   GNL + L                  A+TLT +  L+ A
Sbjct: 66  INLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFA 125

Query: 635 TEAAQGSH 642
           ++ A G  
Sbjct: 126 SDVATGMQ 133

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 539 KVIGKGGFGTVYHGYL--EFNGTQVAVKMLSAS-SVQGYKQFQAEVQ--YIVHHKNLTTL 593
           K IG G FG V  G +   +   QV VK L  S SVQ   +F  E Q    + H NL   
Sbjct: 1   KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQC 60

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSG---ANTLTWEARL--RIATEAAQG 640
           +G C E T   L+ EF   G+L+ +L     A  +T +     R+A E A G
Sbjct: 61  LGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALG 112

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQ----VAVKMLS-ASSVQGYKQFQAEVQYI--VHHKN 589
           F + +G+  FG +Y G+L   G      VA+K L   ++ Q + +FQ E   +  +HH N
Sbjct: 9   FMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPN 68

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +  L+G   ++  + +++E++ +G+L E L
Sbjct: 69  IVCLLGVVTQEQPVCMLFEYLNQGDLHEFL 98

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 537 FEKV--IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTT 592
           FE +  IGKGGFG VY    +  G +VA+K++   S +  ++   E+Q +    H N+  
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEA 629
             G   +   + ++ EF + G+L++ L   N    E+
Sbjct: 62  YYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTES 98

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY 596
             + IGKG FG V  G  ++ G +VAVK +   +       +A V   + H NL  L+G 
Sbjct: 10  LLQTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGV 67

Query: 597 -CDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
             +E   + ++ E+MAKG+L ++L   G + L  +  L+ + +  + 
Sbjct: 68  IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 114

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTLVGYCD 598
           IG G FG V+ GY      +VA+K +   A S + + + +A+V   + H  L  L G C 
Sbjct: 12  IGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIE-EAQVMMKLSHPKLVQLYGVCT 69

Query: 599 EDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           E + + L++EFM  G L ++L +     + E  L +  +  +G
Sbjct: 70  ERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEG 112

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLV 594
             + +G G FG V+ G L  N T VAVK L   ++   K F AE Q +  + H  L  L 
Sbjct: 10  LLRKLGAGQFGEVWEG-LWNNTTPVAVKTLKPGTMDP-KDFLAEAQIMKKLRHPKLIQLY 67

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
             C  +  + ++ E M  G+L E+L       L     + +A + A G
Sbjct: 68  AVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASG 115

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           LPR+  L L S+  SGEI   +    +L  LDLS N+LTG +PE L     L  L L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 439 NLEGSVPAGL 448
           +LEG +P  L
Sbjct: 391 SLEGEIPKSL 400

Length = 968

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 539 KVIGKGGFGTVYHGYLE---FNGT---QVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
             +G G FG VY G        G+   +VAVK L   ++ Q  K+F  E   +   +H N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT-------LTWEARLRIATEAAQGSH 642
           +  L+G C  +    +I E M  G+L  +L  A         LT +  L I  + A+G  
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV 120

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 384 SLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL 440
           SL+LS++ ++  I    F  L +L+ LDLS N+LT   PE  S L  LR L+L+GNNL
Sbjct: 4   SLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 538 EKVIGKGGFGTVYHGYLEFNG-TQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLV 594
           E+ +G G FG V+ G   +NG T+VAVK L   ++   + F  E Q +  + H  L  L 
Sbjct: 11  ERKLGAGQFGEVWMGT--WNGTTKVAVKTLKPGTMSP-EAFLQEAQIMKKLRHDKLVQLY 67

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHLS--GANTLTWEARLRIATEAAQG 640
             C E+  + ++ E+M+KG+L + L       L     + +A + A+G
Sbjct: 68  AVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEG 115

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSASSVQGYK-QFQAEV----QYIVHHKN 589
           EKVIG G FG V  G L+  G +   VA+K L A S    +  F  E     Q+   H N
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQF--DHPN 66

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +  L G   +   + +I E+M  G+L++ L
Sbjct: 67  IIRLEGVVTKSRPVMIITEYMENGSLDKFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 539 KVIGKGGFGTVYHGY----LEFNGTQVAVKML-SASSVQGYKQF--QAEVQYIVHHKNLT 591
           KV+G G FGTVY G      E     VA+K+L   +S +  K+   +A V   V H ++ 
Sbjct: 13  KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVV 72

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            L+G C       LI + M  G L +++
Sbjct: 73  RLLGICLSSQVQ-LITQLMPLGCLLDYV 99

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 378 ELPRIISLN---LSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           EL ++ SL    L  + +SGEI   I  LTSL  LDL  N+LTG +P  L  L  L+ L 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L  N L G +P  +    K  L+SL +  N
Sbjct: 267 LYQNKLSGPIPPSIFSLQK--LISLDLSDN 294

Length = 968

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQV--AVK-MLSASSVQGYKQFQAEVQYIV---HHKNL 590
           F+ VIG+G FG V    ++ +G ++  A+K M   +S   ++ F  E++ +    HH N+
Sbjct: 11  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 70

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAA 638
             L+G C+    + L  E+   GNL + L  +  L  +    IA   A
Sbjct: 71  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 118

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 539 KVIGKGGFGTVYHGYL---EFNGTQVAVKMLSA-SSVQGYKQFQAE--VQYIVHHKNLTT 592
           +VIGKG FG VYHG L   +      AVK L+  + ++  +QF  E  +     H N+ +
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 593 LVGYCDEDTNMGLI-YEFMAKGNL 615
           L+G C       L+   +M  G+L
Sbjct: 61  LLGICLPSEGSPLVVLPYMKHGDL 84

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKM--LSASSV----QGYKQFQAEVQYI--VHHKNL 590
           +V+GKG +GTVY G L   G  +AVK   L  S+V    + Y++ Q EV  +  + H N+
Sbjct: 6   EVLGKGAYGTVYCG-LTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNI 64

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLS 620
              +G C +D  + +  EF+  G++   L+
Sbjct: 65  VQYLGTCLDDNTISIFMEFVPGGSISSILN 94

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)

Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKML-SASSVQGYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML S ++ +      +E++    I 
Sbjct: 24  KPLGEGCFGQVVMA--EAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 81

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            HKN+  L+G C +D  + +I E+ +KGNL E+L
Sbjct: 82  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 115

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQYIVHHKNLTTLVGYC 597
           ++IG+G FG V  G  E+ G +VAVK +    + Q + + +  V   +HHKNL  L+G  
Sbjct: 12  EIIGEGEFGAVLQG--EYTGQKVAVKNIKCDVTAQAFLE-ETAVMTKLHHKNLVRLLGVI 68

Query: 598 DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
             +  + ++ E M+KGNL   L   G   ++    L+ + + A+G
Sbjct: 69  LHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEG 112

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 22/123 (17%)

Query: 540 VIGKGGFGTVYHGYLEFNGTQV--AVKMLSA-SSVQGYKQFQAEVQYIV---HHKNLTTL 593
           VIG+G FG V    ++ +G ++  A+K +   +S   ++ F  E++ +    HH N+  L
Sbjct: 2   VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLRIATEA 637
           +G C+    + L  E+   GNL + L                S A+TL+ +  L  A + 
Sbjct: 62  LGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV 121

Query: 638 AQG 640
           A+G
Sbjct: 122 ARG 124

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 19/111 (17%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTV----YHGYLEFNGTQ-VAVKMLSASSV- 571
           WEL   + +            K +G+G FG V      G    N T  VAVKML   +  
Sbjct: 7   WELPRDRLT----------LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATE 56

Query: 572 QGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +      +E++    I  HKN+  L+G C ++  + ++ E+ A GNL + L
Sbjct: 57  KDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFL 107

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSASSVQGYKQ-FQAEVQYI--VHHKNLT 591
           +KVIG G FG V+ G L+  G +   VA+K L     +  +Q F +E   +    H N+ 
Sbjct: 10  QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNII 69

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            L G   +     +I E+M  G L+++L
Sbjct: 70  RLEGVVTKFKPAMIITEYMENGALDKYL 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 541 IGKGGFGTVYHG--YLEFNGTQVAVKMLSAS-SVQGYKQF--QAEVQYIVHHKNLTTLVG 595
           IG G FG V     Y +    +V VK L A+ S +   +F  Q +   I+ H N+   +G
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLG 62

Query: 596 YCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARL----RIATEAAQG 640
            C E     L++E+   G+L+ +LS        ++L    R+A E A G
Sbjct: 63  QCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAG 111

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 537 FEKVIGKGGFGTV----YHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNL 590
           F + +GKG FG+V    Y    +  G  VAVK L  S+ +  + F+ E++ +  + H N+
Sbjct: 8   FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNI 67

Query: 591 TTL--VGYCDEDTNMGLIYEFMAKGNLEEHLS 620
                V Y     N+ L+ E++  G+L ++L 
Sbjct: 68  VKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQ 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV 444
           L+L  + + G+I   + +LTSL+ L L++N L G +P  L ++  L+ + L  NNL G +
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 445 P 445
           P
Sbjct: 229 P 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           +LP +  L++S++ + G I +  + + SLQ L L+ N   G +P+       L  L+L+ 
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSR 484

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N   G+VP  L   + + L+ L +  N
Sbjct: 485 NQFSGAVPRKL--GSLSELMQLKLSEN 509

Length = 968

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 22/133 (16%)

Query: 525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQGYKQ-FQ 578
           F  S++ +IT      +G+G FG V+         E   T V VK L  +  +  +  F+
Sbjct: 2   FPRSNLQEIT-----TLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFR 56

Query: 579 AEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----SGANT-----LTW 627
            E+     + HKN+  L+G C E     +I E+   G+L++ L    S         L+ 
Sbjct: 57  RELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLST 116

Query: 628 EARLRIATEAAQG 640
           + ++ + T+ A G
Sbjct: 117 KQKVALCTQIALG 129

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLS---ASSVQGYKQFQAEVQ---YIVHHKN 589
              + +G+G FG VY          VA+K+L+    S  +  ++F  E+Q    + H  N
Sbjct: 3   RILRKLGEGSFGEVYLARDRK---LVALKVLAKKLESKSKEVERFLREIQILASLNHPPN 59

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL---SGANTLTWEARLRIATEAAQGSHSAFD 646
           +  L  +  ++ ++ L+ E++  G+LE+ L        L+    L I  +          
Sbjct: 60  IVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSAL-EYLH 118

Query: 647 QGCCPHIC--ESSSSSNPHKNIVKLITFSIIK 676
                H      +   +    +VKLI F + K
Sbjct: 119 SKGIIHRDIKPENILLDRDGRVVKLIDFGLAK 150

Length = 384

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYIVHHKNLTTLVGY 596
           K +G G FG V+ GY   N T+VAVK L     SVQ + + +A +   + H  L  L   
Sbjct: 12  KKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLE-EANLMKTLQHDKLVRLYAV 69

Query: 597 CDEDTNMGLIYEFMAKGNLEEHL 619
             ++  + +I E+MAKG+L + L
Sbjct: 70  VTKEEPIYIITEYMAKGSLLDFL 92

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 541 IGKGGFGTVY-----HGYLEFNGTQVAVKMLSASSVQGYKQFQ--AEVQYIVHHKNLTTL 593
           +G+G FG V+     +   E +   VAVK L  +S    + FQ  AE+  ++ H+++   
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL---------------SGANTLTWEARLRIATEAA 638
            G C E   + +++E+M  G+L   L                    LT    L IA++ A
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIA 132

Query: 639 QG 640
            G
Sbjct: 133 SG 134

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 541 IGKGGFGTVYHG-YLEFNGTQ--VAVKMLSAS-SVQGYKQF--QAEVQYIVHHKNLTTLV 594
           +G G FG+V  G YL  +G +  VAVK L       G K+F  +A V   + H  +  L+
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHL 619
           G C  +  M L+ E    G L ++L
Sbjct: 63  GVCKGEPLM-LVMELAPLGPLLKYL 86

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYIVH--HKNLTTLVG 595
           +IG+G FG VY G     G  VA+K +S   +  +  K    E+  + +  H N+   +G
Sbjct: 7   LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIG 66

Query: 596 YCDEDTNMGLIYEFMAKGNL 615
             +   ++ +I E+   G+L
Sbjct: 67  SIETSDSLYIILEYAENGSL 86

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 539 KVIGKGGFGTVYHGY-LEFNG----TQVAVKML--SASSVQGYKQFQAEVQYI--VHHKN 589
           K +G+G FG V         G    T VAVKML  +ASS +  +   +E   +  V+H +
Sbjct: 6   KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSE-LRDLLSEFNLLKQVNHPH 64

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +  L G C +D  + LI E+   G+L   L
Sbjct: 65  VIKLYGACSQDGPLLLIVEYAKYGSLRSFL 94

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF-QAEVQYIVHHKNLTTLVG 595
           F K +G G FG V+ G        VA+KM+   ++       +A+V   + H NL  L G
Sbjct: 8   FLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYG 66

Query: 596 YCDEDTNMGLIYEFMAKGNLEEHL 619
            C +   + ++ E+MA G L  +L
Sbjct: 67  VCTKQRPIFIVTEYMANGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 541 IGKGGFGTV----YHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHHKNLTTL 593
           +G+G FG V    Y    +  G QVAVK L   S   +    + E++ +  ++H+N+   
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 594 VGYCDEDTNMG--LIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
            G C ED   G  LI EF+  G+L+E+L    N +  + +L+ A +  +G
Sbjct: 72  KGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKG 121

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGT-QVAVKMLSASSVQGYKQFQ-AEVQYIVHHKNLTTLV 594
           F K +G G FG V +G  ++ G   VA+KM+   S+   +  + A+V   + H+ L  L 
Sbjct: 8   FLKELGTGQFGVVKYG--KWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLY 65

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHL 619
           G C +   + ++ E+M+ G L  +L
Sbjct: 66  GVCTKQRPIYIVTEYMSNGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 15/119 (12%)

Query: 539 KVIGKGGFGTVYHG-YLEFNGT----QVAVKML-SASSVQGYKQFQAEVQYI--VHHKNL 590
           + +G G FG VY G Y   +G     QVAVK L  + S Q    F  E   +   +H+N+
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNI 71

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEE-------HLSGANTLTWEARLRIATEAAQGSH 642
             L+G   E     ++ E MA G+L+             ++LT +  L  A + A+G  
Sbjct: 72  VRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCK 130

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 378 ELPRIISLNLSSSGISGEIITYIF----SLTSLQALDLSNNSLT----GSVPEFLSELHF 429
               +  LNL+++GI    I  +     +  +L+ LDL+NN LT     ++ E L+ L  
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 430 LRVLNLTGNNLEGSVPA-----GLLERAKNGLLSLSVDGN 464
           L VLNL  NNL     A      LL      LL+LS+  N
Sbjct: 223 LEVLNLGDNNL-TDAGAAALASALLSPNI-SLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 30/135 (22%)

Query: 536 NFEKVIGKGGFGTVY----HGYLEFNG------------TQVAVKMLSAS-SVQGYKQFQ 578
           NF + +G+G FG V+     G  +F+               VAVK+L    S    + F 
Sbjct: 8   NFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFL 67

Query: 579 AEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS-----------GANTL 625
            EV+ +  +   N+  L+G C  D  + +I E+M  G+L + L             + +L
Sbjct: 68  KEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSL 127

Query: 626 TWEARLRIATEAAQG 640
           ++   L +AT+ A G
Sbjct: 128 SFSTLLYMATQIASG 142

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 537 FEKVIGKGGFGTVY----HGYLEFNGTQ----------VAVKMLSASSVQGYKQ-FQAEV 581
            ++ +G+G FG V+     G  EF G            VAVKML A   +  +  F  E+
Sbjct: 9   LKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEI 68

Query: 582 QYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS 620
           + +  + + N+  L+G C  D  + +I E+M  G+L + LS
Sbjct: 69  KIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLS 109

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 404 TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
           T+L+ LDLSNN +T  +P  LS L  L  L+L+GN + 
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQAEVQYI--VHHKNLTTLVGYC 597
           IG+G FG V+ G L  + T VAVK    +     K +F  E + +    H N+  L+G C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 598 DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQGSHSAFDQGCCPH 652
            +   + ++ E +  G+    L +    L  +  +++   AA G     +   C H
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEY-LESKHCIH 117

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 540 VIGKGGFGTVYHGYL---EFNGTQ-VAVKMLS--ASSVQGYKQFQ-AEVQYIVHHKNLTT 592
           ++ +G FG +++G L   +    + V VK +   AS +Q     Q + + Y + H+N+  
Sbjct: 13  LLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILP 72

Query: 593 LVGYCDEDTNMGLI-YEFMAKGNLEEHL 619
           ++  C ED     + Y +M  GNL+  L
Sbjct: 73  ILHVCIEDGEPPFVLYPYMNWGNLKLFL 100

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 529 DVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSAS-SVQGYKQFQAEVQYI 584
           D   I    E+++G G FG +  G L+    +   VA+  L A  S +  + F AE   +
Sbjct: 3   DNKSIK--IERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTL 60

Query: 585 --VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
               H N+  L G       M ++ E+M+ G L+  L
Sbjct: 61  GQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFL 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 15/94 (15%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQ---------VAVKMLSASSV-QGYKQFQAEVQY---IV 585
           K +G+G FG V     E  G           VAVKML  ++  +      +E++    I 
Sbjct: 18  KPLGEGCFGQVVRA--EAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIG 75

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            HKN+  L+G C ++  + +I E+ AKGNL E L
Sbjct: 76  KHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFL 109

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLS-----ASSVQGYKQFQAEVQYI--VHHKNLT 591
           +++G G FG+VY G    +G   AVK +S      +  +  KQ + E+  +  + H N+ 
Sbjct: 6   ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
             +G   E+ N+ +  E +  G+L + L
Sbjct: 66  QYLGTEREEDNLYIFLELVPGGSLAKLL 93

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 377 NELPRIISLN---LSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVL 433
            E+  + SLN   L  + ++G I + + +L +LQ L L  N L+G +P  +  L  L  L
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 434 NLTGNNLEGSVP 445
           +L+ N+L G +P
Sbjct: 290 DLSDNSLSGEIP 301

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 405 SLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +L++LDLSNN LT         L  L+VL+L+GNNL  S+         + L SL + GN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPS-LRSLDLSGN 58

Query: 465 P 465
            
Sbjct: 59  N 59

Length = 60

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEV-------QYIVHHKN 589
           F K+IG+G F TV     +    + A+K+L    +   K+    V         +  H  
Sbjct: 5   FGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKK-VKYVKIEKEVLTRLNGHPG 63

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +  L     ++ N+  + E+   G L +++
Sbjct: 64  IIKLYYTFQDEENLYFVLEYAPNGELLQYI 93

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 561 VAVKMLSASSVQ-GYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE 616
           VAVKML   + +       +E++    I  HKN+  L+G C +D  + +I E+ +KGNL 
Sbjct: 50  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 109

Query: 617 EHLSGANTLTWEARLRIA 634
           E+L        E    IA
Sbjct: 110 EYLRARRPPGMEYSYDIA 127

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQAEVQYIVH--HKNLTTLVG 595
           +++GKG FG V+ G L+ + T VAVK       Q  K +F +E + +    H N+  L+G
Sbjct: 1   ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIG 59

Query: 596 YCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
            C +   + ++ E +  G+    L    + L  +  ++ A +AA G
Sbjct: 60  VCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAG 105

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGT-QVAVKMLSASSV--QGYKQFQAEVQYIVHHKNLTTL 593
            E  +G+G FG V+ G   +NGT +VA+K L   ++  + + Q +A+V   + H+ L  L
Sbjct: 10  LEVKLGQGCFGEVWMG--TWNGTTRVAIKTLKPGTMSPEAFLQ-EAQVMKKLRHEKLVQL 66

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
                E+  + ++ E+M+KG+L + L G
Sbjct: 67  YAVVSEEP-IYIVTEYMSKGSLLDFLKG 93

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 20/124 (16%)

Query: 537 FEKVIGKGGFGTV-----YHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKN 589
            ++ +G+G FG V     Y+   E +   VAVK L  +S    K F  E + +  + H++
Sbjct: 9   LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH 68

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG-------------ANTLTWEARLRIATE 636
           +    G C E   + +++E+M  G+L + L                  LT    L IA +
Sbjct: 69  IVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQ 128

Query: 637 AAQG 640
            A G
Sbjct: 129 IAAG 132

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIV 585
           S  D  ++  N EK IG+G  G VY       G +VA+K +        +  +  +  I+
Sbjct: 13  SEGDPRELYKNLEK-IGEGASGEVYKATDRATGKEVAIKKMRLRK----QNKELIINEIL 67

Query: 586 -----HHKNLTTLVG-YCDEDTNMGLIYEFMAKGNLEE 617
                 H N+      Y   D  + ++ E+M  G+L +
Sbjct: 68  IMKDCKHPNIVDYYDSYLVGDE-LWVVMEYMDGGSLTD 104

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLT 591
           E+VIG G FG V  G L+  G +   VA+K L +  + +  + F +E   +    H N+ 
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNII 68

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            L G   +   + +I EFM  G L+  L
Sbjct: 69  HLEGVVTKSRPVMIITEFMENGALDSFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 22/120 (18%)

Query: 541 IGKGGFGTVYHGYL-----EFNGTQVAVKMLS-ASSVQGYKQFQAEV----QYIVHHKNL 590
           +G+G FG VY G           T+VA+K ++  +S++   +F  E     ++  HH  +
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHH--V 71

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNL----------EEHLSGANTLTWEARLRIATEAAQG 640
             L+G         ++ E MAKG+L           E+  G    T +  +++A E A G
Sbjct: 72  VRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADG 131

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 41/189 (21%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSA 568
           WEL   + +            K +G+G FG V     E  G           VAVKML  
Sbjct: 7   WELSRTRLTLG----------KPLGEGCFGQVVMA--EAIGIDKDKPNKPVTVAVKMLKD 54

Query: 569 SSV-QGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG--- 621
            +  +      +E++    I  HKN+  L+G C +D  + ++ E+ +KGNL E+L     
Sbjct: 55  DATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRP 114

Query: 622 -------------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVK 668
                           LT++  +  A + A+G      Q C      + +      N++K
Sbjct: 115 PGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMK 174

Query: 669 LITFSIIKN 677
           +  F + ++
Sbjct: 175 IADFGLARD 183

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ---FQA--EVQYI--VHHKN 589
             K +G+G +  VY    +  G  VA+K +     +  K    F A  E++ +  + H N
Sbjct: 4   KGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPN 63

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLE 616
           +  L+      +N+ L++EFM   +LE
Sbjct: 64  IIGLLDVFGHKSNINLVFEFME-TDLE 89

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 537 FEKVIGKGGFGTVYHGY---LEFNGT--QVAVKMLS-ASSVQGYKQFQAEVQ---YIVHH 587
             K +G+G FG V       +E + +   VAVKML   ++   YK    E++   +I HH
Sbjct: 11  LGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHH 70

Query: 588 KNLTTLVGYCDEDTN-MGLIYEFMAKGNLEEHLSG 621
            N+  L+G C +    + +I E+   GNL  +L  
Sbjct: 71  LNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRS 105

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 537 FEKVIGKGGFGTVY----HGYLEFNGT-QVAVKMLSASSVQGYKQ-FQAEVQYIVH---H 587
           F K +G G FG V     +G  + +   +VAVKML  ++    ++   +E++ + H   H
Sbjct: 39  FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH 98

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +N+  L+G C     + +I E+   G+L   L     + LT E  L  + + A+G
Sbjct: 99  ENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKG 153

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	678
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.94
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.93
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.93
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.92
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.92
KOG3653	534	consensus Transforming growth factor beta/activin	99.92
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.91
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.91
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.9
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.9
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.89
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.89
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.88
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.88
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.87
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.87
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.87
KOG0605	550	consensus NDR and related serine/threonine kinases	99.87
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.87
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.87
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.87
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.86
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.86
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.85
KOG0198	313	consensus MEKK and related serine/threonine protei	99.85
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.85
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.85
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.85
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.85
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.85
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.85
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.85
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.84
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.84
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.84
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.84
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.84
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.84
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.84
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.84
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.84
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.84
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.84
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.84
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.84
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.84
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.84
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.83
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.83
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.83
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.83
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.83
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.83
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.83
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.83
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.83
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.83
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.83
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.83
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.83
KOG0578	550	consensus p21-activated serine/threonine protein k	99.83
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.83
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.83
PHA02988	283	hypothetical protein; Provisional	99.83
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.83
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.83
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.83
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.83
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.83
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.82
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.82
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.82
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.82
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.82
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.82
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.82
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.82
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.82
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.82
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.82
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.82
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.82
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.82
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.82
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.82
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.81
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.81
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.81
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.81
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.81
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.81
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.81
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.81
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.81
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.81
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.81
PTZ00267	478	NIMA-related protein kinase; Provisional	99.81
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.81
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.81
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.81
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.81
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.8
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.8
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.8
KOG0610	459	consensus Putative serine/threonine protein kinase	99.8
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.8
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.8
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.8
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.8
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.8
KOG0584	632	consensus Serine/threonine protein kinase [General	99.8
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.8
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.8
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.8
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.8
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.8
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.8
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.8
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.8
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.8
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.79
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.79
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.79
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.79
PHA03212	391	serine/threonine kinase US3; Provisional	99.79
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.79
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.79
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.79
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.79
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.79
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.79
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.79
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.79
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.79
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.79
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.79
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.78
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.78
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.78
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.78
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.78
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.78
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.78
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.78
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.78
KOG0586	596	consensus Serine/threonine protein kinase [General	99.78
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.78
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.78
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.78
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.78
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.78
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.78
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.78
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.78
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.78
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.78
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.78
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.78
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.78
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.78
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.78
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.78
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.78
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.78
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.78
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.78
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.77
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.77
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.77
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.77
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.77
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.77
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.77
PTZ00283	496	serine/threonine protein kinase; Provisional	99.77
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.77
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.77
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.77
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.77
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.77
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.77
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.77
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.77
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.77
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.77
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.77
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.77
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.77
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.77
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.77
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.77
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.77
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.77
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.77
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.77
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.77
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.77
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.77
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.77
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.77
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.77
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.77
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.76
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.76
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.76
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.76
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.76
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.76
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.76
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.76
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.76
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.76
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.76
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.76
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.76
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.76
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.76
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.76
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.76
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.76
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.76
PHA03211	461	serine/threonine kinase US3; Provisional	99.76
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.76
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.76
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.76
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.76
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.76
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.76
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.76
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.76
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.76
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.76
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.76
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.76
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.76
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.75
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.75
KOG0589	426	consensus Serine/threonine protein kinase [General	99.75
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.75
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.75
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.75
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.75
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.75
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.75
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.75
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.75
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.75
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.75
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.75
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.75
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.75
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.75
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.75
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.75
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.75
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.75
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.75
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.75
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.75
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.75
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.75
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.75
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.75
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.75
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.75
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.74
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.74
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.74
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.74
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.74
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.74
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.74
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.74
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.74
PHA03209	357	serine/threonine kinase US3; Provisional	99.74
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.74
PTZ00036	440	glycogen synthase kinase; Provisional	99.74
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.74
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.74
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.74
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.74
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.73
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.73
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.73
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.73
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.73
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.73
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.73
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.73
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.73
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.73
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.73
PRK09188	365	serine/threonine protein kinase; Provisional	99.73
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.73
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.73
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.73
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.73
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.73
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.73
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.72
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.72
PHA03207	392	serine/threonine kinase US3; Provisional	99.72
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.72
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.72
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.72
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.72
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.72
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.72
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.72
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.72
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.72
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.72
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.72
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.72
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.72
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.72
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.72
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.71
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.71
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.71
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.71
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.71
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.71
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.71
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.71
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.71
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.71
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.71
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.71
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.71
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.71
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.71
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.71
PLN00009	294	cyclin-dependent kinase A; Provisional	99.71
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.7
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.7
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.7
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.7
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.7
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.7
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.7
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.7
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.7
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.69
PTZ00284	467	protein kinase; Provisional	99.69
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.69
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.69
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.69
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.69
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.69
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.69
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.68
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.68
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.68
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.68
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.68
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.68
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.68
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.68
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.68
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.68
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.68
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.68
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.68
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.67
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.67
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.67
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.67
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.67
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.66
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.66
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.66
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.66
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.65
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.65
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.65
PHA03210	501	serine/threonine kinase US3; Provisional	99.65
KOG1152	772	consensus Signal transduction serine/threonine kin	99.65
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.64
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.64
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.63
PHA02882	294	putative serine/threonine kinase; Provisional	99.63
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.63
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.62
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.62
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.62
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.62
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.61
PRK10345	210	hypothetical protein; Provisional	99.61
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.61
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.59
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.59
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.59
PRK14879	211	serine/threonine protein kinase; Provisional	99.58
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.56
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.56
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.56
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.54
smart00090	237	RIO RIO-like kinase.	99.54
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.53
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.52
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.5
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.49
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.48
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.48
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.46
PRK12274	218	serine/threonine protein kinase; Provisional	99.45
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.44
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.44
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.44
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.41
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.41
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.39
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.38
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.38
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.37
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.33
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.28
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.27
PLN03150	623	hypothetical protein; Provisional	99.26
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.24
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.23
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.16
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.95
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.94
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.83
PLN00181	793	protein SPA1-RELATED; Provisional	98.82
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.79
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.76
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.69
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.69
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.52
KOG3087	229	consensus Serine/threonine protein kinase [General	98.49
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.48
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.48
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.22
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.21
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.09
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.03
KOG1243	690	consensus Protein kinase [General function predict	97.98
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.96
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	97.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.74
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.72
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.68
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.63
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.56
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	97.46
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.44
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.42
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.36
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.34
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.3
PRK09902	216	hypothetical protein; Provisional	97.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.23
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	97.23
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.19
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.1
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.0
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.99
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.89
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.8
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.68
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.65
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.64
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.23
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	96.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.06
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.95
PRK09550	401	mtnK methylthioribose kinase; Reviewed	95.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.45

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-81  Score=717.18  Aligned_cols=472  Identities=25%  Similarity=0.424  Sum_probs=365.4

Q ss_pred             CeEeecCCCCCCCC-ccCCCCeeeecCCCcccCCceeeeCCCccCccccccccceeeecC--CCCCceeeecCCCCCcce
Q 038969            1 FISIDCGIPHDSSY-TDKITGINYVSDSTFIDTGVINNISSEYSSNKTLERQFLNVRSFP--EGIRNCYTLKPSSGDVKF   77 (678)
Q Consensus         1 fisidCG~~~~~~y-~d~~t~i~~~~D~~fi~~G~~~~i~~~~~~~~~~~~~~~tlR~Fp--~g~rnCY~l~~~~g~~~Y   77 (678)
                      +++||||++.  ++ +|. +|++|++|..|+. |.....+.. .   ...++|+|+|+||  +|+||||++|+++++ ||
T Consensus        25 ~~~I~CGs~~--~~~~d~-~~~~w~~D~~~~~-~~~~~~~~~-~---~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g-~y   95 (623)
T PLN03150         25 TMRISCGARV--NVRTAP-TNTLWYKDFAYTG-GIPANATRP-S---FIAPPLKTLRYFPLSDGPENCYNINRVPKG-HY   95 (623)
T ss_pred             cEEEeCCCCC--CcccCC-CCCEEcCCccccc-CccccccCc-c---cccchhhccccCCcccccccceEeeecCCC-cE
Confidence            5899999863  34 554 8999999988863 333333322 1   3457899999999  699999999998887 99


Q ss_pred             EEEEEeecccCCCCCCCceEEEEecCcEEEEEEe--cCCCccEEEEEEEeccCCceeEEEEecCCCCceeeeeeeeecCC
Q 038969           78 LIRARFMYGNYDGQNIIPSFSLLLEADVWDSVNL--KDASGIVTKEIIHAPKKNYMYVCLVNTGSGTPFISALELRPLKN  155 (678)
Q Consensus        78 liR~~F~ygnyd~~~~~p~Fdl~~g~~~w~~v~~--~~~~~~~~~e~i~~~~~~~~~vClv~~~~g~PfIS~lElr~l~~  155 (678)
                      |||++|+|||||+.+++|.|||++|+|.|.+|..  +.++..+++|+|+.+++++++|||+++++|+||||+||||||++
T Consensus        96 lVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~l~~  175 (623)
T PLN03150         96 SVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDD  175 (623)
T ss_pred             EEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEEcCc
Confidence            9999999999999999999999999999999975  34556788999999999999999999999999999999999999


Q ss_pred             Ccccccc---cc--eEE---EecCCCCC-CCcCCCCCCC--cccccCCCC---CCceeeeeccccc-cCCCCCCCcHHHH
Q 038969          156 STYETQS---GS--LLL---WDVGSTTS-EAIRYPDDVY--DRIWSPYRS---LRWESITRRSDST-FFENDWQLPLTIM  220 (678)
Q Consensus       156 ~~Y~~~~---~~--l~l---~~~g~~~~-~~~rypdD~~--DR~W~~~~~---~~~~~ist~~~i~-~~~~~~~~P~~v~  220 (678)
                      .+|....   .+  |++   +|+|+... ..+|||||+|  ||+|.|+..   ..|..+++...|. ..++++.+|+.||
T Consensus       176 ~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~Vy  255 (623)
T PLN03150        176 KAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLY  255 (623)
T ss_pred             ccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHh
Confidence            9996442   23  555   89997643 4589999999  999998754   4688898888883 3356788999999


Q ss_pred             hhccccCCCCccceEEEeeCCCCCCceEEEEEeeeccC-CCCCceeEEEEEECCeeecCCcCcc-----ccceeeeEeee
Q 038969          221 RTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEG-RQENQTREMSIYSNGKLWYGPFVPY-----TFFTTTLVSIY  294 (678)
Q Consensus       221 ~tA~~~~~~~~~~l~~~~~~~~~~~~~~~~lhFaei~~-~~~~~~R~F~I~lng~~~~~~~~p~-----~~~~~~~~~~~  294 (678)
                      |||+++.++. ..+++.|+ .+++..|+|+|||||++. ....++|+|+|++||+.....+.+.     ...........
T Consensus       256 qTA~~~~~~~-~~lty~~~-v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v  333 (623)
T PLN03150        256 QSALVSTDTQ-PDLSYTMD-VDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTV  333 (623)
T ss_pred             hhhccccCCC-CceEEEee-cCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEE
Confidence            9999988765 67888887 357789999999999984 5567899999999998765544332     22222222222


Q ss_pred             ecCCCceeEEEEeecCCCCCCcccchHHHHhhhcCCCCCCchhhHHHHHHHHHhhCCCC--CCCCCCCCCcccccccccC
Q 038969          295 PSKGSERIDFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKK--NWQGDPCAPKVYLWQGLNC  372 (678)
Q Consensus       295 ~~~~~~~~~lsl~~~~~s~lpp~lna~e~~~~~~~~~~~~~~~d~~al~~~k~~~~~~~--~w~g~pc~p~~~~w~gv~C  372 (678)
                      .. ..+.++|++.+..++  ||+|||+|+|.+... ...+.+.|+.||+++|..++...  +|+|+||.|..+.|.||.|
T Consensus       334 ~~-~~g~l~isl~p~~~s--~pilNaiEI~~~~~~-~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C  409 (623)
T PLN03150        334 AV-SGRTLTIVLQPKKGT--HAIINAIEVFEIITA-ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADC  409 (623)
T ss_pred             ee-cCCeEEEEEeeCCCC--cceeeeeeeeecccc-ccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCccccccccee
Confidence            33 347899999998766  799999999999995 66789999999999999987543  8999999998889999999


Q ss_pred             CCCCC-------------------------CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhh
Q 038969          373 SYDGN-------------------------ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSEL  427 (678)
Q Consensus       373 ~~~~~-------------------------~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  427 (678)
                      +....                         .+++|+.|+|++|+|+|.+|..++.|++|+.|||++|+|+|.+|+.+++|
T Consensus       410 ~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L  489 (623)
T PLN03150        410 QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL  489 (623)
T ss_pred             eccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence            64211                         13466677777777777777777777777777777777777777777777


Q ss_pred             hhhhhhhccCCCCCCCCcccchhhhccccccccccCCCCCcccc---ccccCCCCeEEEEEEee
Q 038969          428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTA---SCNKRQNNKYIVPVAAS  488 (678)
Q Consensus       428 ~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l~~~~n~~lC~~~---~c~~~~~~~~~v~i~~~  488 (678)
                      ++|+.|+|++|+|+|.+|..+..+. .....+.+.+|+.+|+.+   .|........++.++++
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~-~~~~~l~~~~N~~lc~~p~l~~C~~~~~~~~~i~~~~~  552 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFG  552 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhcc-ccCceEEecCCccccCCCCCCCCcccCCCceEEEEEhH
Confidence            7777777777777777777765432 122356788999999864   57533333334444433

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=7.5e-71  Score=587.71  Aligned_cols=318  Identities=47%  Similarity=0.775  Sum_probs=273.7

Q ss_pred             eecCCCCCCC-CccCCCCeeeecCCCcccCCceeeeCCC--ccCccccccccceeeecCCCCCceeeecCC--CCCcceE
Q 038969            4 IDCGIPHDSS-YTDKITGINYVSDSTFIDTGVINNISSE--YSSNKTLERQFLNVRSFPEGIRNCYTLKPS--SGDVKFL   78 (678)
Q Consensus         4 idCG~~~~~~-y~d~~t~i~~~~D~~fi~~G~~~~i~~~--~~~~~~~~~~~~tlR~Fp~g~rnCY~l~~~--~g~~~Yl   78 (678)
                      ||||++.+.+ |+|+.||++|++|.+|+++|++++|+..  .... ...++|+|+|+||+|.||||+|++.  +|+ |||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~-~~~~~y~taR~F~~g~r~cY~l~~~~~~~~-~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSS-DSSPPYQTARIFPEGSRNCYTLPVTPPGGG-KYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCC-ccccccceEEEcCCCCccEEEeeccCCCCc-eEE
Confidence            8999987777 9999999999999999999999999422  1111 4678999999999999999999987  455 999


Q ss_pred             EEEEeecccCCCCC-----CCceEEEEecCcEEEEEEecCCC--ccEEEE-EEEeccCCceeEEEEecCCCC-ceeeeee
Q 038969           79 IRARFMYGNYDGQN-----IIPSFSLLLEADVWDSVNLKDAS--GIVTKE-IIHAPKKNYMYVCLVNTGSGT-PFISALE  149 (678)
Q Consensus        79 iR~~F~ygnyd~~~-----~~p~Fdl~~g~~~w~~v~~~~~~--~~~~~e-~i~~~~~~~~~vClv~~~~g~-PfIS~lE  149 (678)
                      ||++|+|||||+++     .+|.|||++|+|.|++|++++ +  ..+++| +|+++.++.++|||+++++|+ ||||+||
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE  157 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE  157 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence            99999999999985     367899999999999999887 4  358999 778888999999999999999 9999999


Q ss_pred             eeecCCCccc--ccccc--eEE---EecCCCCCCCcCCCCCCCcccccCCC-CCCceeeeeccccc--cCCCCCCCcHHH
Q 038969          150 LRPLKNSTYE--TQSGS--LLL---WDVGSTTSEAIRYPDDVYDRIWSPYR-SLRWESITRRSDST--FFENDWQLPLTI  219 (678)
Q Consensus       150 lr~l~~~~Y~--~~~~~--l~l---~~~g~~~~~~~rypdD~~DR~W~~~~-~~~~~~ist~~~i~--~~~~~~~~P~~v  219 (678)
                      ||||++++|+  ...++  |.+   +|+|+..+ .+|||||+|||+|.|+. .+.|..++|..+|+  ..++.|.+|.+|
T Consensus       158 l~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~-~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V  236 (347)
T PF12819_consen  158 LRPLPDSLYPDTDANSSQALETVYRLNVGGSSS-FIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAV  236 (347)
T ss_pred             EEECCccceeccccCCCceeEEEEeecCCCccc-ccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHH
Confidence            9999999995  23333  665   89988654 39999999999999985 67899999987774  446789999999


Q ss_pred             HhhccccCCCCccceEEEeeCCCCCCceEEEEEeeeccCCC-CCceeEEEEEECCeeecCCcCccccceeee--Eeee--
Q 038969          220 MRTAVRPANASINSLSFYWKTSTPESQYYIFLHFAEVEGRQ-ENQTREMSIYSNGKLWYGPFVPYTFFTTTL--VSIY--  294 (678)
Q Consensus       220 ~~tA~~~~~~~~~~l~~~~~~~~~~~~~~~~lhFaei~~~~-~~~~R~F~I~lng~~~~~~~~p~~~~~~~~--~~~~--  294 (678)
                      ||||+++.+.+ ..++++|...+++.+|||+|||||||.+. .+++|+|+|++||+.+.+++.|.++...++  +...  
T Consensus       237 ~~TA~~~~~~s-~~~nltw~~~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~  315 (347)
T PF12819_consen  237 YQTARTPSNSS-DPLNLTWSFVDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVV  315 (347)
T ss_pred             HHhhhcccccc-cceEEEeccCCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEE
Confidence            99999999988 78999999988889999999999999875 445899999999998877899988877665  3322  


Q ss_pred             ecCCCceeEEEEeecCCCCCCcccchHHHHhh
Q 038969          295 PSKGSERIDFSINKTENSTLPPILNAEEIYLA  326 (678)
Q Consensus       295 ~~~~~~~~~lsl~~~~~s~lpp~lna~e~~~~  326 (678)
                      .+...+.++|+|.++.+|++||||||+|||.+
T Consensus       316 ~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  316 NVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             EecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            23355689999999999999999999999864

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.5e-33  Score=336.07  Aligned_cols=285  Identities=28%  Similarity=0.432  Sum_probs=173.8

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccc----
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGL----  456 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~----  456 (678)
                      .++.|+|++|.+.|.+|..+.+|++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|..+..+..+..    
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            4444555555555555555555555555555555555555555555555555555555555555544433322211    


Q ss_pred             -----------------ccccccCCCCCcccc------ccccCCCCe-EEEEEEeeehhhHHHHHHHhhhhhhhccccCC
Q 038969          457 -----------------LSLSVDGNPKLCHTA------SCNKRQNNK-YIVPVAASVVSLSVLLTALAILWNLKRRKQGG  512 (678)
Q Consensus       457 -----------------l~l~~~~n~~lC~~~------~c~~~~~~~-~~v~i~~~~~~~~~l~~~~~~~~~~~rr~~~~  512 (678)
                                       ....+.||+.+|+..      .|....+.. ..+.++++++++++++++++++++++||++..
T Consensus       580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (968)
T PLN00113        580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLE  659 (968)
T ss_pred             CCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                             123467899999753      454321222 22222222222222222222222223322111


Q ss_pred             --C---ccccccc------cCccccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHH
Q 038969          513 --R---KKGSWEL------KNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEV  581 (678)
Q Consensus       513 --~---~~~~~~~------~~~~fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev  581 (678)
                        +   ..+.++.      ..+.++++++.... ...++||+|+||.||+|+...++..||||.+........    .|+
T Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~----~~~  734 (968)
T PLN00113        660 LKRVENEDGTWELQFFDSKVSKSITINDILSSL-KEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPS----SEI  734 (968)
T ss_pred             ccccccccccccccccccccchhhhHHHHHhhC-CcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccH----HHH
Confidence              1   1111211      11234455554332 224689999999999999877899999999875432221    223


Q ss_pred             HH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCC
Q 038969          582 QY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSS  659 (678)
Q Consensus       582 ~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk  659 (678)
                      +.  .++|||||+++|+|.+.+..++|||||++|+|.++++.   ++|.++.+|+.|+|+||+ |||+.|.++|+|||||
T Consensus       735 ~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~L~-yLH~~~~~~iiH~dlk  810 (968)
T PLN00113        735 ADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN---LSWERRRKIAIGIAKALR-FLHCRCSPAVVVGNLS  810 (968)
T ss_pred             HHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc---CCHHHHHHHHHHHHHHHH-HhccCCCCCeecCCCC
Confidence            33  58999999999999999999999999999999999964   899999999999999999 9998777899999999


Q ss_pred             CCC----CCCcEEEEeeCCc
Q 038969          660 SNP----HKNIVKLITFSII  675 (678)
Q Consensus       660 ~~N----~~~~vkI~DFGla  675 (678)
                      |+|    .+...++. ||.+
T Consensus       811 p~Nil~~~~~~~~~~-~~~~  829 (968)
T PLN00113        811 PEKIIIDGKDEPHLR-LSLP  829 (968)
T ss_pred             HHhEEECCCCceEEE-eccc
Confidence            999    45556654 5544

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-33  Score=299.61  Aligned_cols=155  Identities=46%  Similarity=0.747  Sum_probs=142.6

Q ss_pred             cCccccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEE
Q 038969          521 KNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGY  596 (678)
Q Consensus       521 ~~~~fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~  596 (678)
                      ..+.|++.||.++|++|.  .+||+|+||.||+|.+. +|+.||||++.....+..++|.+|+..  +++|||||+|+||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~-~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS-DGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC-CCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEE
Confidence            567799999999999998  69999999999999998 779999998877654325679999999  4999999999999


Q ss_pred             EEcCC-eeEEEEecCCCCCHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEE
Q 038969          597 CDEDT-NMGLIYEFMAKGNLEEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKL  669 (678)
Q Consensus       597 ~~~~~-~~~LV~Ey~~~GsL~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI  669 (678)
                      |.+.+ +.+||||||++|+|.++|+...  .++|.+|++||.++|+||+ |||+.|.++|||||||++|    ++..+||
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~-yLH~~~~~~iiHrDiKssNILLD~~~~aKl  218 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLA-YLHEGCPPPIIHRDIKSSNILLDEDFNAKL  218 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH-HHccCCCCCEecCCCCHHHeeECCCCCEEc
Confidence            99988 5999999999999999999864  8999999999999999999 9999999999999999999    7999999


Q ss_pred             EeeCCccc
Q 038969          670 ITFSIIKN  677 (678)
Q Consensus       670 ~DFGlar~  677 (678)
                      +|||||+.
T Consensus       219 sDFGLa~~  226 (361)
T KOG1187|consen  219 SDFGLAKL  226 (361)
T ss_pred             cCccCccc
Confidence            99999974

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.94  E-value=8.4e-27  Score=240.18  Aligned_cols=134  Identities=19%  Similarity=0.371  Sum_probs=123.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|.||+||+|+++.++..||||.+...  .....+....|+.++  ++|||||+|+.+++.++..+||||||.+||
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGD   95 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGD   95 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCC
Confidence            5699999999999999989999999999876  444556678899884  999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---C---CcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---K---NIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~---~~vkI~DFGlar  676 (678)
                      |.+||+.+..+++.....++.|+|.||+ +||+   .+||||||||.|    .   .   -.+||+|||+||
T Consensus        96 Ls~yi~~~~~l~e~t~r~Fm~QLA~alq-~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR  163 (429)
T KOG0595|consen   96 LSDYIRRRGRLPEATARHFMQQLASALQ-FLHE---NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFAR  163 (429)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCCcceEEeccCCCCCCCceEEecccchhh
Confidence            9999999889999999999999999999 9999   899999999999    1   1   568999999998

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-25  Score=239.33  Aligned_cols=134  Identities=31%  Similarity=0.555  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEE-EEEEEeccCch--hhHHHHHHHHHHh--cCCCCcccEEEEEEcCC-eeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQ-VAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT-NMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~-VAVK~l~~~~~--~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~-~~~LV~Ey~~  611 (678)
                      .+.||+|+||+||+|.+  .|+. ||||++.....  ...++|.+|+.++  ++|||||+|+|+|.+.. .++||||||+
T Consensus        46 ~~~iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhcccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            35699999999999998  5676 99999987532  2266899999984  99999999999998877 7999999999


Q ss_pred             CCCHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCC-ccccCCCCCC----CCC-cEEEEeeCCccc
Q 038969          612 KGNLEEHLSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPH-ICESSSSSNP----HKN-IVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~-iiHrDlk~~N----~~~-~vkI~DFGlar~  677 (678)
                      +|+|.++|+.  +..+++..+++||.|||+||+ |||+   .. |||||||++|    .+. ++||+|||++|.
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~-YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRIALDIARGME-YLHS---EGPIIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHH-HHhc---CCCeeecccChhhEEEcCCCCEEEECCCcccee
Confidence            9999999987  488999999999999999999 9999   55 9999999999    665 999999999974

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.1e-25  Score=251.07  Aligned_cols=138  Identities=26%  Similarity=0.493  Sum_probs=123.9

Q ss_pred             hhhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchh-hHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEE
Q 038969          536 NFEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQ-GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .|.+.||+|+||+||+|+..     .+.+.||||.++..... ..++|++|++++  ++|||||+|+|.|.++++++||+
T Consensus       489 ~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvF  568 (774)
T KOG1026|consen  489 VFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVF  568 (774)
T ss_pred             eehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEE
Confidence            45678999999999999863     13357999999987544 788999999984  99999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC----------C----CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEE
Q 038969          608 EFMAKGNLEEHLSGA----------N----TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKL  669 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~----------~----~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI  669 (678)
                      |||..|||.+||+..          .    +|+..+.+.||.|||.||+ ||-+   ..+|||||.++|    ++..|||
T Consensus       569 EYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~-YLs~---~~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  569 EYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGME-YLSS---HHFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CcccccchhhhhceeccceEEEe
Confidence            999999999999632          2    3899999999999999999 9999   899999999999    8999999


Q ss_pred             EeeCCccc
Q 038969          670 ITFSIIKN  677 (678)
Q Consensus       670 ~DFGlar~  677 (678)
                      +||||+|+
T Consensus       645 sDfGLsRd  652 (774)
T KOG1026|consen  645 SDFGLSRD  652 (774)
T ss_pred             cccccchh
Confidence            99999996

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=2.4e-25  Score=237.57  Aligned_cols=138  Identities=25%  Similarity=0.418  Sum_probs=124.4

Q ss_pred             HhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          534 TNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       534 t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .-.+.+.||+|.||.|+.|.+. ....||+|.++... ...++|.+|++++  ++|+|||+++|+|..+++.+||||||+
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~-~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~  284 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWN-GSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP  284 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEc-CCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence            3345688999999999999995 45599999998763 3457888998884  999999999999999889999999999


Q ss_pred             CCCHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+||+.  +..+...+.+.+|.|||+||+ ||++   ..+|||||.++|    ++..+||+||||||.
T Consensus       285 ~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~-YLes---~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~  352 (468)
T KOG0197|consen  285 KGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMA-YLES---KNYIHRDLAARNILVDEDLVVKISDFGLARL  352 (468)
T ss_pred             cCcHHHHhhhcCCCccchHHHHHHHHHHHHHHH-HHHh---CCccchhhhhhheeeccCceEEEcccccccc
Confidence            9999999986  478999999999999999999 9999   899999999999    888999999999984

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.92  E-value=9.1e-25  Score=223.44  Aligned_cols=147  Identities=20%  Similarity=0.279  Sum_probs=131.3

Q ss_pred             ccccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEc
Q 038969          523 RKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE  599 (678)
Q Consensus       523 ~~fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~  599 (678)
                      ..++..||++.     ..||+|..|+||+++++.+++.+|+|.+... ...-.++..+|++++  .+||+||+++|.|..
T Consensus        74 ~~i~~~dle~~-----~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~  148 (364)
T KOG0581|consen   74 NGISLSDLERL-----GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS  148 (364)
T ss_pred             cccCHHHhhhh-----hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe
Confidence            34677787764     5799999999999999989999999999654 445567889999883  899999999999998


Q ss_pred             CC-eeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          600 DT-NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       600 ~~-~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      .. +..|+||||.+|+|.+++...+.+++...-+||.+|++||. |||+.  +.||||||||+|    ..+.|||||||.
T Consensus       149 ~~~~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~-YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGV  225 (364)
T KOG0581|consen  149 NGEEISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLS-YLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGV  225 (364)
T ss_pred             CCceEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHhhc--cCeeeccCCHHHeeeccCCCEEeccccc
Confidence            88 59999999999999999997788999999999999999999 99964  789999999999    899999999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      ++.
T Consensus       226 S~~  228 (364)
T KOG0581|consen  226 SGI  228 (364)
T ss_pred             cHH
Confidence            874

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=3.3e-25  Score=231.54  Aligned_cols=133  Identities=29%  Similarity=0.453  Sum_probs=119.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH----hcCCCCcccEEEEEEcCC----eeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY----IVHHKNLTTLVGYCDEDT----NMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~----~l~H~NIv~l~g~~~~~~----~~~LV~E  608 (678)
                      +.++||+|+||.||+|++  +++.||||++..   +..+.|++|-.+    .++|+||++++++-..+.    +.+||+|
T Consensus       214 l~eli~~Grfg~V~KaqL--~~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~  288 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQL--DNRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTE  288 (534)
T ss_pred             hHHHhhcCccceeehhhc--cCceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEee
Confidence            457899999999999998  579999999976   445677777666    389999999999987666    8999999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcC------CCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG------CCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~------~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.++|+|.+||.. ..++|.+..+||..+|+||+ |||+.      .+|+|+|||||++|    ++.++.|+|||||.
T Consensus       289 fh~kGsL~dyL~~-ntisw~~~cria~SmarGLa-~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl  364 (534)
T KOG3653|consen  289 FHPKGSLCDYLKA-NTISWNSLCRIAESMARGLA-HLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLAL  364 (534)
T ss_pred             eccCCcHHHHHHh-ccccHHHHHHHHHHHHHHHH-HhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeE
Confidence            9999999999986 67999999999999999999 99985      47899999999999    99999999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.3e-24  Score=221.92  Aligned_cols=136  Identities=18%  Similarity=0.313  Sum_probs=121.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-------hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-------GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-------~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.|-+|..+.+|+.||||+++.....       .....++|+++  .++|||||++++++...+..|||||
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE  256 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLE  256 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEE
Confidence            47899999999999999989999999999764211       12234678777  4999999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      ||++|+|.+++-..+.+.+..-..++.|++.|+. |||+   .+|+||||||+|       ++..+||+||||||-
T Consensus       257 ~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avk-YLH~---~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  257 YVEGGELFDKVVANKYLREDLGKLLFKQLLTAVK-YLHS---QGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             EecCccHHHHHHhccccccchhHHHHHHHHHHHH-HHHH---cCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            9999999999998888999999999999999999 9999   999999999999       557899999999983

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.91  E-value=6.3e-25  Score=240.43  Aligned_cols=150  Identities=25%  Similarity=0.413  Sum_probs=136.0

Q ss_pred             ccccHhhHHHHHhhh-----------hhhcccCCceEEEEEEEccCCE---EEEEEEeccCch-hhHHHHHHHHHHh--c
Q 038969          523 RKFSYSDVAKITNNF-----------EKVIGKGGFGTVYHGYLEFNGT---QVAVKMLSASSV-QGYKQFQAEVQYI--V  585 (678)
Q Consensus       523 ~~fs~~el~~~t~~f-----------~~~IG~G~fG~Vy~g~~~~~g~---~VAVK~l~~~~~-~~~~~f~~Ev~~~--l  585 (678)
                      ..++|+|--++...|           +++||.|.||.|++|+++..|+   .||||.++.... ..+.+|+.|+.+|  +
T Consensus       608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF  687 (996)
T KOG0196|consen  608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF  687 (996)
T ss_pred             CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC
Confidence            457888888887776           3789999999999999986664   799999998743 4567899999996  8


Q ss_pred             CCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--
Q 038969          586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--  662 (678)
Q Consensus       586 ~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--  662 (678)
                      .||||++|.|+.....+.+||+|||+||+|..||+.+ .++++.+.+.|.++||.||. ||.+   .+.|||||.++|  
T Consensus       688 dHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMk-YLsd---m~YVHRDLAARNIL  763 (996)
T KOG0196|consen  688 DHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMK-YLSD---MNYVHRDLAARNIL  763 (996)
T ss_pred             CCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhH-HHhh---cCchhhhhhhhhee
Confidence            9999999999999999999999999999999999976 67999999999999999999 9999   999999999999  


Q ss_pred             --CCCcEEEEeeCCcc
Q 038969          663 --HKNIVKLITFSIIK  676 (678)
Q Consensus       663 --~~~~vkI~DFGlar  676 (678)
                        .+..+||+||||+|
T Consensus       764 VNsnLvCKVsDFGLSR  779 (996)
T KOG0196|consen  764 VNSNLVCKVSDFGLSR  779 (996)
T ss_pred             eccceEEEecccccee
Confidence              78889999999998

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=7.2e-24  Score=228.49  Aligned_cols=135  Identities=20%  Similarity=0.297  Sum_probs=124.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+|+.+|.++....|..||+|++...   .....+...+||++  .++|||||++++++++.++.|||.|+|++
T Consensus        23 g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~  102 (592)
T KOG0575|consen   23 GRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHR  102 (592)
T ss_pred             eeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCC
Confidence            36899999999999999668999999999874   33445678889888  49999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.++++.++++++.++..+.+||+.||. |||+   .+|||||||..|    ++.+|||+|||||-
T Consensus       103 ~sL~el~Krrk~ltEpEary~l~QIv~Glk-YLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt  166 (592)
T KOG0575|consen  103 GSLMELLKRRKPLTEPEARYFLRQIVEGLK-YLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGLAT  166 (592)
T ss_pred             ccHHHHHHhcCCCCcHHHHHHHHHHHHHHH-HHHh---cCceecccchhheeecCcCcEEecccceee
Confidence            999999998899999999999999999999 9999   899999999999    78899999999985

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=7.3e-24  Score=229.54  Aligned_cols=136  Identities=25%  Similarity=0.430  Sum_probs=122.3

Q ss_pred             hhhcccCCceEEEEEEEccCCE---E-EEEEEeccC---chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT---Q-VAVKMLSAS---SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~---~-VAVK~l~~~---~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|.++..+.   . ||||..+.+   .....++|.+|++++  ++|||||+++|++..+.+++||||
T Consensus       162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmE  241 (474)
T KOG0194|consen  162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVME  241 (474)
T ss_pred             cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEE
Confidence            4789999999999999975422   3 899999853   356678999999984  999999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~-~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+||+|.+||+... .++..++++++.++|.||+ |||+   ..+|||||.++|    ....+||+||||++.
T Consensus       242 l~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~-YLh~---k~~IHRDIAARNcL~~~~~~vKISDFGLs~~  311 (474)
T KOG0194|consen  242 LCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLE-YLHS---KNCIHRDIAARNCLYSKKGVVKISDFGLSRA  311 (474)
T ss_pred             ecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHH-HHHH---CCCcchhHhHHHheecCCCeEEeCccccccC
Confidence            999999999999764 5999999999999999999 9999   899999999999    567789999999984

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6e-23  Score=216.34  Aligned_cols=133  Identities=18%  Similarity=0.243  Sum_probs=119.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey~~~  612 (678)
                      +.||+|.||.||+++...+|+.||+|++..+.  .....-..+||.+  .++||||++|.+...++  ..+|||+|||++
T Consensus       123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh  202 (560)
T KOG0600|consen  123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH  202 (560)
T ss_pred             HHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc
Confidence            57999999999999998899999999997654  2334456788888  39999999999998776  789999999998


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                       ||..++... ..++..++..++.|++.||+ |+|.   .+|+|||||.+|    .++.+||+||||||
T Consensus       203 -DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~-~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  203 -DLSGLLSSPGVKFTEPQIKCYMKQLLEGLE-YCHS---RGVLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             -hhhhhhcCCCcccChHHHHHHHHHHHHHHH-HHhh---cCeeeccccccceEEcCCCCEEecccccee
Confidence             999998864 67999999999999999999 9999   999999999999    89999999999998

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.89  E-value=8.4e-23  Score=199.73  Aligned_cols=134  Identities=20%  Similarity=0.348  Sum_probs=121.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh-h-HHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-G-YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~-~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+|+|.||.||+|+....|+.||||+++..... + .....+|+..+  ++|+||+.|++++...+.+-||+|||+. +
T Consensus         8 ~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~t-d   86 (318)
T KOG0659|consen    8 EKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMPT-D   86 (318)
T ss_pred             hhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEeccc-c
Confidence            6899999999999999889999999999875332 1 24567888874  9999999999999999999999999987 9


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+..++.+ ..++..++..++.++.+||+ |+|.   ..|+||||||.|    +++.+||+||||||.
T Consensus        87 Le~vIkd~~i~l~pa~iK~y~~m~LkGl~-y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr~  150 (318)
T KOG0659|consen   87 LEVVIKDKNIILSPADIKSYMLMTLKGLA-YCHS---KWILHRDLKPNNLLISSDGQLKIADFGLARF  150 (318)
T ss_pred             HHHHhcccccccCHHHHHHHHHHHHHHHH-HHHh---hhhhcccCCccceEEcCCCcEEeecccchhc
Confidence            99999876 67999999999999999999 9999   899999999999    899999999999984

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.88  E-value=7.1e-23  Score=209.58  Aligned_cols=136  Identities=21%  Similarity=0.290  Sum_probs=124.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .++||+|+||+||.++.+..++.+|+|++++...   .+.+...+|..+  .++||.||+++-.+++++.+|||+||+.|
T Consensus        30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~G  109 (357)
T KOG0598|consen   30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNG  109 (357)
T ss_pred             eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCC
Confidence            3799999999999999988899999999987633   234556777666  49999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.|..+|..+..+++..+.-++.+|+.||. |||+   .+||||||||+|    ++++++|+||||||+
T Consensus       110 GeLf~hL~~eg~F~E~~arfYlaEi~lAL~-~LH~---~gIiyRDlKPENILLd~~GHi~LtDFgL~k~  174 (357)
T KOG0598|consen  110 GELFYHLQREGRFSEDRARFYLAEIVLALG-YLHS---KGIIYRDLKPENILLDEQGHIKLTDFGLCKE  174 (357)
T ss_pred             ccHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHHh---CCeeeccCCHHHeeecCCCcEEEeccccchh
Confidence            999999998889999999999999999999 9999   999999999999    999999999999996

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.88  E-value=1e-22  Score=216.73  Aligned_cols=144  Identities=24%  Similarity=0.432  Sum_probs=126.6

Q ss_pred             hhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeE
Q 038969          528 SDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMG  604 (678)
Q Consensus       528 ~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~  604 (678)
                      .|..+..--|.+.||+|.||.|..|... .+..||||+++.... ..+++|.+|+.++  ++|||||.|+|+|..+++++
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeve-g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePic  611 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVE-GPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLC  611 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEec-CceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchH
Confidence            3444444456789999999999999986 569999999998754 4568999999994  89999999999999999999


Q ss_pred             EEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          605 LIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|||++|+|.+||..+  ..+.-...++||.|||.||+ ||.+   ..+|||||.++|    .+.++||+|||++|
T Consensus       612 mI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgma-YLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR  685 (807)
T KOG1094|consen  612 MITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMA-YLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSR  685 (807)
T ss_pred             HHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHH-HHHh---hchhhccccccceeecCcccEEecCccccc
Confidence            999999999999999876  33456777889999999999 9999   789999999999    88999999999998

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=217.12  Aligned_cols=131  Identities=27%  Similarity=0.422  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|.||+||+|++.   -.||||++....  .+..+.|++||..  .-+|.||+-++|||...+. +||+.+|++-
T Consensus       397 ~~rIGsGsFGtV~Rg~wh---GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGs  472 (678)
T KOG0193|consen  397 GERIGSGSFGTVYRGRWH---GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGS  472 (678)
T ss_pred             cceeccccccceeecccc---cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCc
Confidence            478999999999999984   369999998763  4567899999988  3899999999999998776 9999999999


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+.+|+.. ..+...+.++||+|||+||. |||.   +.|||||||+.|    +++.|||+|||||.
T Consensus       473 SLY~hlHv~etkfdm~~~idIAqQiaqGM~-YLHA---K~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  473 SLYTHLHVQETKFDMNTTIDIAQQIAQGMD-YLHA---KNIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             hhhhhccchhhhhhHHHHHHHHHHHHHhhh-hhhh---hhhhhhhccccceEEccCCcEEEeccccee
Confidence            999999965 67899999999999999999 9999   999999999999    66999999999974

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=233.47  Aligned_cols=138  Identities=28%  Similarity=0.494  Sum_probs=124.2

Q ss_pred             hhhhhcccCCceEEEEEEEcc-CC----EEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEE
Q 038969          536 NFEKVIGKGGFGTVYHGYLEF-NG----TQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~-~g----~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.+.||+|.||.||+|.... +|    ..||||.++.. +.+...+|.+|..++  ++|||||+++|.|.+....+|++
T Consensus       695 ~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~l  774 (1025)
T KOG1095|consen  695 TLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILL  774 (1025)
T ss_pred             EeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEe
Confidence            345789999999999999852 22    35999999875 567788999999885  89999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC-------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          608 EFMAKGNLEEHLSGA-------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |||++|+|..||++.       ..|+..+.+.+|.|||+|+. ||++   .++|||||.++|    +...|||+||||||
T Consensus       775 eyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~-YLe~---~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr  850 (1025)
T KOG1095|consen  775 EYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMN-YLES---KHFVHRDLAARNCLLDERRVVKIADFGLAR  850 (1025)
T ss_pred             hhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhH-HHHh---CCCcCcchhhhheeecccCcEEEcccchhH
Confidence            999999999999864       56999999999999999999 9999   899999999999    88999999999999


Q ss_pred             c
Q 038969          677 N  677 (678)
Q Consensus       677 ~  677 (678)
                      +
T Consensus       851 D  851 (1025)
T KOG1095|consen  851 D  851 (1025)
T ss_pred             h
Confidence            6

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=6.9e-23  Score=214.44  Aligned_cols=134  Identities=19%  Similarity=0.307  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHH--HHHHHHH--hcC-CCCcccEEEEEEcCC-eeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ--FQAEVQY--IVH-HKNLTTLVGYCDEDT-NMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~--f~~Ev~~--~l~-H~NIv~l~g~~~~~~-~~~LV~Ey~~  611 (678)
                      .+.||.|.||.||+|+....|..||||.++..-. ..++  =.+|+..  ++. |||||+|.+++.+.+ .+++|||||+
T Consensus        15 i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~-s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md   93 (538)
T KOG0661|consen   15 IRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFY-SWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMD   93 (538)
T ss_pred             HHHhcCCcceeEEEeeecCCCceeeHHHHHhhhc-cHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhh
Confidence            3689999999999999988999999999976522 1222  3567776  377 999999999998877 9999999997


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      . +|.+.++++ ..+++.++..|+.||++||+ |+|+   .++.|||+||+|    ....+||+||||||+
T Consensus        94 ~-NLYqLmK~R~r~fse~~irnim~QilqGL~-hiHk---~GfFHRDlKPENiLi~~~~~iKiaDFGLARe  159 (538)
T KOG0661|consen   94 C-NLYQLMKDRNRLFSESDIRNIMYQILQGLA-HIHK---HGFFHRDLKPENILISGNDVIKIADFGLARE  159 (538)
T ss_pred             h-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHH-HHHh---cCcccccCChhheEecccceeEecccccccc
Confidence            5 999999876 78999999999999999999 9999   999999999999    588999999999997

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.87  E-value=4.7e-22  Score=211.40  Aligned_cols=134  Identities=24%  Similarity=0.270  Sum_probs=122.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh---HHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~---~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||.|+-+..|..+|+|+++.+....   .+..++|-.++  ..++.||+|+-.+++.+.+||||||+|||
T Consensus       147 k~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGG  226 (550)
T KOG0605|consen  147 KVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGG  226 (550)
T ss_pred             eeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCc
Confidence            68999999999999999899999999998875443   34455565553  78999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++..+|.....|++..+..++.+++-|++ -||+   .++|||||||+|    ..|++||+|||||+
T Consensus       227 D~mTLL~~~~~L~e~~arfYiaE~vlAI~-~iH~---~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~  289 (550)
T KOG0605|consen  227 DMMTLLMRKDTLTEDWARFYIAETVLAIE-SIHQ---LGYIHRDIKPDNLLIDAKGHIKLSDFGLST  289 (550)
T ss_pred             cHHHHHHhcCcCchHHHHHHHHHHHHHHH-HHHH---cCcccccCChhheeecCCCCEeeccccccc
Confidence            99999998899999999999999999999 9999   999999999999    89999999999985

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.87  E-value=1.6e-22  Score=200.70  Aligned_cols=134  Identities=19%  Similarity=0.262  Sum_probs=116.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      -++|+|+||.||+|+.+..|+.||||++.++..  .-.+-..+|++++  ++|+|+|.|+.+|..+..++||+|||+.-=
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTv   87 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTV   87 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHH
Confidence            368999999999999998999999999976533  2344568898884  999999999999999999999999998844


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+.=+-...++...+.+++.|+++|+. |.|+   ..+|||||||+|    ..+.+||||||+||
T Consensus        88 L~eLe~~p~G~~~~~vk~~l~Q~l~ai~-~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFAR  149 (396)
T KOG0593|consen   88 LHELERYPNGVPSELVKKYLYQLLKAIH-FCHK---NNCIHRDIKPENILITQNGVVKLCDFGFAR  149 (396)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHhh-hhhh---cCeecccCChhheEEecCCcEEeccchhhH
Confidence            4443333367999999999999999999 9999   889999999999    89999999999998

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.87  E-value=4.1e-22  Score=200.36  Aligned_cols=134  Identities=16%  Similarity=0.259  Sum_probs=117.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh-h-HHHHHHHHHHh--cCCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-G-YKQFQAEVQYI--VHHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~-~~~f~~Ev~~~--l~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      +.|++|.||.||+|+++++++.||+|+++.+... + -..-.+||.++  ++|||||.+-.+...  -+..|||||||++
T Consensus        82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh  161 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH  161 (419)
T ss_pred             hhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHh
Confidence            5799999999999999989999999999875321 1 12347888884  889999999988754  4679999999988


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                       +|...+..- +++...++.-++.|+++||+ |||.   .-|+|||||++|    +.+.+||+||||||+
T Consensus       162 -DLksl~d~m~q~F~~~evK~L~~QlL~glk-~lH~---~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~  226 (419)
T KOG0663|consen  162 -DLKSLMETMKQPFLPGEVKTLMLQLLRGLK-HLHD---NWILHRDLKTSNLLLSHKGILKIADFGLARE  226 (419)
T ss_pred             -hHHHHHHhccCCCchHHHHHHHHHHHHHHH-HHhh---ceeEecccchhheeeccCCcEEecccchhhh
Confidence             999999865 58999999999999999999 9999   899999999999    899999999999996

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=4.3e-22  Score=206.91  Aligned_cols=132  Identities=26%  Similarity=0.439  Sum_probs=114.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH----hcCCCCcccEEEEEEcC----CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY----IVHHKNLTTLVGYCDED----TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~----~l~H~NIv~l~g~~~~~----~~~~LV~Ey  609 (678)
                      .+.||+|.||.||+|++  .|..||||++...+.   +.+.+|.++    +++|+||+.+++.-...    .+++||+||
T Consensus       216 ~e~IGkGRyGEVwrG~w--rGe~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdY  290 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRW--RGEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDY  290 (513)
T ss_pred             EEEecCccccceeeccc--cCCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeec
Confidence            37899999999999998  589999999986543   344455444    69999999999976433    368999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcC-----CCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG-----CCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~-----~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++|+|.|||.. ..++....+++|..+|.||+ +||.+     -+|.|.|||||++|    .++.+-|+|+|||-
T Consensus       291 He~GSL~DyL~r-~tv~~~~ml~LalS~AsGLa-HLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv  364 (513)
T KOG2052|consen  291 HEHGSLYDYLNR-NTVTTEGMLKLALSIASGLA-HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  364 (513)
T ss_pred             ccCCcHHHHHhh-ccCCHHHHHHHHHHHhhhHH-HHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeE
Confidence            999999999987 78999999999999999999 99985     37899999999999    89999999999985

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.86  E-value=6.7e-22  Score=210.07  Aligned_cols=136  Identities=17%  Similarity=0.258  Sum_probs=122.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch-----hhHHHHHHHHHHhc-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-----QGYKQFQAEVQYIV-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-----~~~~~f~~Ev~~~l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      |.+.||+|.|++|++|+....++++|||++.+.-.     ...-..++++..++ .||.|++|+-.+.+...+|+|+||+
T Consensus        77 Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A  156 (604)
T KOG0592|consen   77 FGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYA  156 (604)
T ss_pred             hhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEec
Confidence            67899999999999999988899999999976421     12223455666555 8999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.++|++...+++.....+|.+|..||+ |||.   .+||||||||+|    +++++||+|||-||
T Consensus       157 ~nGdll~~i~K~Gsfde~caR~YAAeIldAle-ylH~---~GIIHRDlKPENILLd~dmhikITDFGsAK  222 (604)
T KOG0592|consen  157 PNGDLLDLIKKYGSFDETCARFYAAEILDALE-YLHS---NGIIHRDLKPENILLDKDGHIKITDFGSAK  222 (604)
T ss_pred             CCCcHHHHHHHhCcchHHHHHHHHHHHHHHHH-HHHh---cCceeccCChhheeEcCCCcEEEeeccccc
Confidence            99999999998889999999999999999999 9999   999999999999    99999999999987

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.86  E-value=6.4e-22  Score=202.53  Aligned_cols=137  Identities=16%  Similarity=0.334  Sum_probs=125.7

Q ss_pred             hhhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .|.+.||+|.||.|-++.....|+.||||.++.+.   .+..-...+|+++|  ++||||++++.+|+.++...|||||.
T Consensus        56 E~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYa  135 (668)
T KOG0611|consen   56 EITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYA  135 (668)
T ss_pred             HHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEec
Confidence            34578999999999999987789999999998763   44555678899886  99999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+|.|.+|+.++..|++.+...+++||..|+. |.|.   .+++|||||.+|    .++++||+||||+.
T Consensus       136 S~GeLYDYiSer~~LsErEaRhfFRQIvSAVh-YCHk---nrVvHRDLKLENILLD~N~NiKIADFGLSN  201 (668)
T KOG0611|consen  136 SGGELYDYISERGSLSEREARHFFRQIVSAVH-YCHK---NRVVHRDLKLENILLDQNNNIKIADFGLSN  201 (668)
T ss_pred             CCccHHHHHHHhccccHHHHHHHHHHHHHHHH-HHhh---ccceecccchhheeecCCCCeeeeccchhh
Confidence            99999999999999999999999999999999 9999   899999999999    88999999999974

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4.6e-22  Score=212.32  Aligned_cols=134  Identities=25%  Similarity=0.436  Sum_probs=123.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ..+||-|.||.||.|.+++-...||||.++++. ...++|++|+.+|  ++|||+|+|+|+|..+...|||+|||.+|+|
T Consensus       272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNL  350 (1157)
T KOG4278|consen  272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNL  350 (1157)
T ss_pred             eeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccH
Confidence            478999999999999998788899999998765 4578999999885  9999999999999999999999999999999


Q ss_pred             HHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+||++.  ..++--..+.||.||+.||+ ||..   ..+|||||.++|    ++..|||+||||+|
T Consensus       351 LdYLRecnr~ev~avvLlyMAtQIsSaMe-YLEk---knFIHRDLAARNCLVgEnhiVKvADFGLsR  413 (1157)
T KOG4278|consen  351 LDYLRECNRSEVPAVVLLYMATQISSAME-YLEK---KNFIHRDLAARNCLVGENHIVKVADFGLSR  413 (1157)
T ss_pred             HHHHHHhchhhcchhHHHHHHHHHHHHHH-HHHH---hhhhhhhhhhhhccccccceEEeeccchhh
Confidence            9999875  56777888999999999999 9999   899999999999    88889999999997

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.85  E-value=2.9e-21  Score=200.65  Aligned_cols=136  Identities=20%  Similarity=0.333  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC--eeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT--NMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~--~~~LV~Ey~~~G  613 (678)
                      .+.||+|.||.||++...++|...|||.....+....+.+++|+.++  ++|||||+.+|......  .++|.|||+++|
T Consensus        22 ~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~G  101 (313)
T KOG0198|consen   22 GKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGG  101 (313)
T ss_pred             hccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCC
Confidence            47899999999999999877999999999776444467788999884  88999999999855444  689999999999


Q ss_pred             CHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-CCcEEEEeeCCccc
Q 038969          614 NLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-KNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~-~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-~~~vkI~DFGlar~  677 (678)
                      +|.+++.... .|++..+.+.++||++||+ |||+   ++||||||||+|    . .+.+||+|||+|+.
T Consensus       102 sL~~~~~~~g~~l~E~~v~~ytr~iL~GL~-ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen  102 SLSDLIKRYGGKLPEPLVRRYTRQILEGLA-YLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             cHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeccCcccceEEEeCCCCeEEeccCccccc
Confidence            9999998754 7999999999999999999 9999   999999999999    5 58999999999874

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.85  E-value=4.4e-21  Score=204.42  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=120.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||+++...+|+.||+|+++...   ......+.+|+.+  .++||||+++++++...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999998789999999997542   2234556777776  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~  144 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALG-YLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCcc
Confidence            99999987788999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.85  E-value=2.6e-21  Score=191.91  Aligned_cols=144  Identities=21%  Similarity=0.281  Sum_probs=127.0

Q ss_pred             ccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchh---hHHHHHHHHHH--hcCCCCcccEEEEEEc
Q 038969          525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ---GYKQFQAEVQY--IVHHKNLTTLVGYCDE  599 (678)
Q Consensus       525 fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~---~~~~f~~Ev~~--~l~H~NIv~l~g~~~~  599 (678)
                      +++++.+.     .+.||.|.||.|..++.+..|..+|+|+++....-   +.+...+|..+  .+.||.++++.+.+.+
T Consensus        41 ~~l~dfe~-----~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d  115 (355)
T KOG0616|consen   41 YSLQDFER-----LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD  115 (355)
T ss_pred             cchhhhhh-----eeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc
Confidence            55555543     36899999999999999988999999999876432   23345566555  3889999999999999


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      .+..+|||||.++|.|..+|+...++++..+.-+|.||+.||+ |||+   ..|++|||||+|    ..+.+||+|||+|
T Consensus       116 ~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAle-ylH~---~~iiYRDLKPENiLlD~~G~iKitDFGFA  191 (355)
T KOG0616|consen  116 NSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALE-YLHS---LDIIYRDLKPENLLLDQNGHIKITDFGFA  191 (355)
T ss_pred             CCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHH-HHHh---cCeeeccCChHHeeeccCCcEEEEeccce
Confidence            9999999999999999999998889999999999999999999 9999   899999999999    8999999999999


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      |.
T Consensus       192 K~  193 (355)
T KOG0616|consen  192 KR  193 (355)
T ss_pred             EE
Confidence            84

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=8.3e-22  Score=190.23  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=121.6

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      ..+.||+|.||.||.|+.+.++-.||+|++..+..   +-.+++.+|+++  -++||||+++++|+.+....||++||.+
T Consensus        26 igr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~  105 (281)
T KOG0580|consen   26 IGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAP  105 (281)
T ss_pred             ccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecC
Confidence            35899999999999999988888999999976532   334678888877  4999999999999999999999999999


Q ss_pred             CCCHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          612 KGNLEEHLSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       612 ~GsL~~~L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      .|+|...|++  ...++......+..|+|.||. |+|.   +.||||||||+|    ..+.+||+|||-+
T Consensus       106 ~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~-y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfGws  171 (281)
T KOG0580|consen  106 RGELYKDLQEGRMKRFDEQRAATYIKQLANALL-YCHL---KRVIHRDIKPENLLLGSAGELKIADFGWS  171 (281)
T ss_pred             CchHHHHHHhcccccccccchhHHHHHHHHHHH-Hhcc---CCcccCCCCHHHhccCCCCCeeccCCCce
Confidence            9999999994  377999999999999999999 9999   899999999999    7889999999964

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.85  E-value=8.6e-21  Score=202.67  Aligned_cols=135  Identities=20%  Similarity=0.236  Sum_probs=120.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+++...+|+.||+|++....   ......+.+|+..  .++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999988789999999997542   2344567778776  389999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~  144 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALD-YLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEecccCHHHeEECCCCcEEEecCcCCcc
Confidence            99999987778999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.85  E-value=6e-21  Score=203.40  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=120.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+++...+|+.||+|++....   ......+..|+..  .++||||+++++++...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            36899999999999988789999999997642   2334556677766  389999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~  144 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALE-YLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhcc
Confidence            99999987778999999999999999999 9999   899999999999    788999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.85  E-value=2.1e-21  Score=206.25  Aligned_cols=134  Identities=21%  Similarity=0.351  Sum_probs=124.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|.||.||||+.+.+.+.||+|.+.+...  .+.+...+|++++  ++|||||.++++++...++++|+||+.+ +
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~   86 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-D   86 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-h
Confidence            689999999999999988889999999977533  4567789999983  9999999999999999999999999976 9


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |..+|.....++++++..|+.|+..||. |||+   .+|+|||+||.|    ..+++|+||||+||.
T Consensus        87 L~~il~~d~~lpEe~v~~~a~~LVsaL~-yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~  149 (808)
T KOG0597|consen   87 LFTILEQDGKLPEEQVRAIAYDLVSALY-YLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLARA  149 (808)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHh---cCcccccCCcceeeecCCCceeechhhhhhh
Confidence            9999998889999999999999999999 9999   899999999999    889999999999985

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=6.4e-21  Score=205.25  Aligned_cols=135  Identities=16%  Similarity=0.263  Sum_probs=119.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC----ch-hhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS----SV-QGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~----~~-~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|.||.|+.|.....|..||||++...    .. ...+...+|+.+  +++ ||||++++.++......++||||
T Consensus        22 ~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy  101 (370)
T KOG0583|consen   22 GRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEY  101 (370)
T ss_pred             eeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEe
Confidence            47899999999999999888999999977653    11 123455678766  367 99999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC-CcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK-NIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~-~~vkI~DFGlar  676 (678)
                      +.+|+|.+++....++.+.++.++++|++.|++ |+|+   .+|+||||||+|    .+ +++||+|||+++
T Consensus       102 ~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~-y~H~---~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~  169 (370)
T KOG0583|consen  102 CSGGDLFDYIVNKGRLKEDEARKYFRQLISAVA-YCHS---RGIVHRDLKPENILLDGNEGNLKLSDFGLSA  169 (370)
T ss_pred             cCCccHHHHHHHcCCCChHHHHHHHHHHHHHHH-HHHh---CCEeeCCCCHHHEEecCCCCCEEEecccccc
Confidence            999999999998889999999999999999999 9999   899999999999    55 899999999986

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=1.1e-20  Score=200.43  Aligned_cols=133  Identities=18%  Similarity=0.164  Sum_probs=119.1

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||+++...+++.||+|++...   .......+.+|+.+  .++||||+++++++...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            69999999999999877889999999753   22344567777776  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~  142 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALE-NLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKL  142 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEeCCCCHHHeEECCCCcEEEEECccccc
Confidence            999987778999999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.84  E-value=9.2e-21  Score=205.34  Aligned_cols=135  Identities=24%  Similarity=0.256  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||||+++...   ......+.+|+.+  .++|+||+++++.+.+....+|||||+++
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPG   85 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCC
Confidence            368999999999999988788999999997542   2233456677766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla~  149 (363)
T cd05628          86 GDMMTLLMKKDTLTEEETQFYIAETVLAID-SIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLCT  149 (363)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEecCCCHHHeEECCCCCEEEeeccCcc
Confidence            999999987788999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=7.8e-21  Score=198.86  Aligned_cols=135  Identities=20%  Similarity=0.319  Sum_probs=115.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh--------------hHHHHHHHHHH--hcCCCCcccEEEEEEc--
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--------------GYKQFQAEVQY--IVHHKNLTTLVGYCDE--  599 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--------------~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--  599 (678)
                      .+.||+|.||.|-+|+...+++.||||++......              ..+...+||.+  +++|+|||+|+.+-.+  
T Consensus       102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~  181 (576)
T KOG0585|consen  102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPE  181 (576)
T ss_pred             hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcc
Confidence            36799999999999999888999999999654211              12467788888  4999999999999865  


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      .+.+|||+|||..|.+...-.....++..++.++.+++..||+ |||.   ++||||||||+|    +++++||+|||.+
T Consensus       182 s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLE-YLH~---QgiiHRDIKPsNLLl~~~g~VKIsDFGVs  257 (576)
T KOG0585|consen  182 SDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLE-YLHY---QGIIHRDIKPSNLLLSSDGTVKISDFGVS  257 (576)
T ss_pred             cCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHH-HHHh---cCeeccccchhheEEcCCCcEEeecccee
Confidence            4679999999999987765444334999999999999999999 9999   999999999999    8899999999987


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      -
T Consensus       258 ~  258 (576)
T KOG0585|consen  258 N  258 (576)
T ss_pred             e
Confidence            5

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.84  E-value=1.1e-20  Score=206.21  Aligned_cols=135  Identities=14%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||||++....   ......+..|+.+  .++|+||+++++++.+.+..++||||+++
T Consensus         6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~g   85 (381)
T cd05626           6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (381)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            367999999999999998788999999997542   2334567788777  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||.   .+|+||||||+|    ..+.+||+|||+++
T Consensus        86 g~L~~~l~~~~~~~e~~~~~~~~qi~~aL~-~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~~  149 (381)
T cd05626          86 GDMMSLLIRMEVFPEVLARFYIAELTLAIE-SVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLCT  149 (381)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCCc
Confidence            999999987778999999999999999999 9999   899999999999    78899999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=1.4e-20  Score=205.03  Aligned_cols=135  Identities=22%  Similarity=0.216  Sum_probs=121.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||||.+....   ....+.+.+|+.+  .++|+||+++++++.+....+|||||+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~g   85 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPG   85 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCC
Confidence            378999999999999998789999999986532   2334567778777  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~l~~~~~~~~~~~~~~~~ql~~aL~-~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          86 GDLMTMLIKYDTFSEDVTRFYMAECVLAIE-AVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            999999987778999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.84  E-value=2.2e-20  Score=199.13  Aligned_cols=136  Identities=19%  Similarity=0.217  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||++....+|+.||+|+++...   .....++..|++.  .++|+||+++++++...+..+|||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999987789999999997542   2234556677766  389999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+.  .+|+||||||+|    +++.+||+|||+|+.
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~  145 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALD-YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKE  145 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCee
Confidence            99999987778999999999999999999 99962  589999999999    788999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=1e-20  Score=204.85  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+|+.||||++....   ....+.+.+|+.+  .++|+||+++++++...+..+|||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPG   85 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCC
Confidence            378999999999999998789999999997542   2234556777777  38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        86 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  149 (364)
T cd05599          86 GDMMTLLMKKDTFTEEETRFYIAETILAID-SIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLCT  149 (364)
T ss_pred             cHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCCHHHeEECCCCCEEEeecccce
Confidence            999999987778999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.84  E-value=1.8e-20  Score=199.76  Aligned_cols=135  Identities=25%  Similarity=0.271  Sum_probs=118.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+++...+|+.||+|++....   ....+++..|...   .++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            46899999999999998789999999997542   2233455555543   38899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|..++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~-~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~  145 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALG-YLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKE  145 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCHHHeEECCCCCEEEeecCCccc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.84  E-value=1.6e-20  Score=192.27  Aligned_cols=134  Identities=18%  Similarity=0.299  Sum_probs=116.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh-h-HHHHHHHHHH--hcCCCC-cccEEEEEEcCC------eeEEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-G-YKQFQAEVQY--IVHHKN-LTTLVGYCDEDT------NMGLIY  607 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~-~~~f~~Ev~~--~l~H~N-Iv~l~g~~~~~~------~~~LV~  607 (678)
                      +.||+|.||.||+|+.+.+|+.||+|++...... + -....+|+.+  .++|+| ||.|++++...+      .++||+
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvf   96 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVF   96 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEE
Confidence            5699999999999999989999999999775432 1 2234667766  499999 999999998776      789999


Q ss_pred             ecCCCCCHHHhhcCCC----CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGAN----TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~----~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+.. +|..++....    .++...+..++.|+++||+ |+|+   .+|+||||||.|    +.+.+||+|||+||.
T Consensus        97 e~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~-~~H~---~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   97 EFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLA-FLHS---HGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             Eeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecccCCcceEEECCCCcEeeeccchHHH
Confidence            99976 9999998642    5777899999999999999 9999   999999999999    899999999999984

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.84  E-value=1.6e-20  Score=200.68  Aligned_cols=136  Identities=18%  Similarity=0.249  Sum_probs=122.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||+|.+....   ....+.+.+|+.+  .++||||+++++++..++..++||||+++
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  102 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVG  102 (329)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCC
Confidence            478999999999999998788999999997542   2234567788877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus       103 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~  167 (329)
T PTZ00263        103 GELFTHLRKAGRFPNDVAKFYHAELVLAFE-YLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKK  167 (329)
T ss_pred             ChHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCHHHEEECCCCCEEEeeccCceE
Confidence            999999987778999999999999999999 9999   899999999999    788999999999873

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.84  E-value=2e-20  Score=199.95  Aligned_cols=135  Identities=18%  Similarity=0.236  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+++...+++.||+|+++..   .....+.+..|+..+   .+||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            3689999999999999878899999999764   223344566676652   5899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|..++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~-~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~  145 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALN-YLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCcccc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=8.7e-21  Score=198.96  Aligned_cols=136  Identities=18%  Similarity=0.213  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||+|++....   ....+.+.+|+.+  .++||||+++++++.+.+..++||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   85 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPG   85 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCC
Confidence            478999999999999998789999999996532   2334567788777  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          86 GELFSYLRNSGRFSNSTGLFYASEIVCALE-YLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCHHHeEECCCCCEEEEecCcchh
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.84  E-value=1.9e-20  Score=200.01  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=119.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+++...+++.||||+++...   ....+.+..|..++   .+||||+++++++...+..+|||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36899999999999998788999999997642   22334566776662   4799999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  145 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALN-FLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHeEECCCCCEEECcCccccc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.84  E-value=1.9e-20  Score=204.31  Aligned_cols=135  Identities=14%  Similarity=0.163  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||+|.+....   ......+.+|+.+  .++|+||+++++.+.+++..+||||||++
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~g   85 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPG   85 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCC
Confidence            368999999999999998788999999997542   2234567778776  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~l~~~~~~~e~~~~~~~~qi~~al~-~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          86 GDMMSLLIRMGIFPEDLARFYIAELTCAVE-SVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            999999987778899999999999999999 9999   899999999999    78899999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.84  E-value=2.3e-20  Score=198.89  Aligned_cols=135  Identities=24%  Similarity=0.261  Sum_probs=118.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|+...+|+.||+|++....   ....+++..|...   .++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36899999999999998789999999997542   1223445555443   38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~  145 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALG-YLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCcc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.83  E-value=2.2e-20  Score=199.77  Aligned_cols=136  Identities=18%  Similarity=0.256  Sum_probs=121.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||||+++...   ....+.+..|+.+  .++|+||+++++++...+..+|||||+++
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g   85 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPG   85 (333)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCC
Confidence            478999999999999998778999999997542   2234567778776  38899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        86 ~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~  150 (333)
T cd05600          86 GDFRTLLNNLGVLSEDHARFYMAEMFEAVD-ALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKG  150 (333)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEECCCCCEEEEeCcCCcc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.83  E-value=2.1e-20  Score=198.59  Aligned_cols=135  Identities=21%  Similarity=0.242  Sum_probs=116.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|+...+++.||||.++...   ....+.+..|...   ..+||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999988778899999997542   1223344444444   36899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~-~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~  145 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQ-FLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKE  145 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeE
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.83  E-value=2.5e-20  Score=198.40  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|+...+++.||||+++...   ....+.+..|..++   .+||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999988778899999997542   22334556666552   5899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|..++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~  145 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALM-FLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKE  145 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHeEECCCCCEEEeeccccee
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.83  E-value=2.4e-20  Score=198.40  Aligned_cols=135  Identities=23%  Similarity=0.248  Sum_probs=117.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|+...+|+.||+|++....   .....++..|...   .++|+||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999998788999999997542   1223445555443   48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~  145 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIG-YLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCcc
Confidence            999999987778999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.83  E-value=7.4e-21  Score=189.90  Aligned_cols=144  Identities=21%  Similarity=0.340  Sum_probs=131.6

Q ss_pred             cHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCe
Q 038969          526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTN  602 (678)
Q Consensus       526 s~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~  602 (678)
                      ++.|+.+.|.   +.||+|+++.|--++.-.+|.++|||++.+...+.+....+|+++.   -.|+||++|+.+++++..
T Consensus        74 ~F~d~YkLt~---e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~  150 (463)
T KOG0607|consen   74 KFEDMYKLTS---ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTR  150 (463)
T ss_pred             hHHHHHHhHH---HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccce
Confidence            3678888885   7899999999999998889999999999888777788899999984   459999999999999999


Q ss_pred             eEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCc
Q 038969          603 MGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSII  675 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGla  675 (678)
                      .|||||-|.||.|..++.+++.+++.++.++..+||.||. |||.   .+|.||||||+|       .-.-+|||||.|+
T Consensus       151 FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLd-FlH~---kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  151 FYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALD-FLHT---KGIAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             EEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHH-HHhh---cCcccccCCccceeecCCCCcCceeeeccccc
Confidence            9999999999999999999899999999999999999999 9999   999999999999       3345899999886


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      .
T Consensus       227 S  227 (463)
T KOG0607|consen  227 S  227 (463)
T ss_pred             c
Confidence            5

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.8e-21  Score=197.50  Aligned_cols=131  Identities=21%  Similarity=0.358  Sum_probs=111.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHhcCCCCcccEEEEEEcCC-----eeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDT-----NMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~H~NIv~l~g~~~~~~-----~~~LV~Ey~~~G  613 (678)
                      +++|.|.||.||+|.....++.||||+.-.+..  .+.++-++..+++|||||+|+-++....     ...+||||||. 
T Consensus        30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-  106 (364)
T KOG0658|consen   30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-  106 (364)
T ss_pred             EEEeecccceEEEEEEcCCCceeEEEEecCCCC--cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-
Confidence            689999999999999987889999999876543  2334444444799999999999885422     34689999998 


Q ss_pred             CHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +|.+.++.    +..++...+.-++.|+.+||+ |||.   .+|+||||||.|     +.+.+||||||-||
T Consensus       107 tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~-yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK  174 (364)
T KOG0658|consen  107 TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLA-YLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSAK  174 (364)
T ss_pred             HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHH-HHHh---cCcccCCCChheEEEcCCCCeEEeccCCcce
Confidence            99999974    367888899999999999999 9999   999999999999     77999999999987

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.83  E-value=2.5e-20  Score=202.88  Aligned_cols=135  Identities=15%  Similarity=0.158  Sum_probs=120.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.||||++....   ......+.+|+.+  .++|+||+++++.+.+++..++||||+++
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCC
Confidence            368999999999999998789999999996532   1234557778777  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~i~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          86 GDMMSLLIRLGIFEEDLARFYIAELTCAIE-SVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            999999987778999999999999999999 9999   899999999999    78899999999974

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.83  E-value=2.3e-20  Score=198.58  Aligned_cols=135  Identities=23%  Similarity=0.275  Sum_probs=118.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+++.+.+++.||||++....   ....+.+..|+..+   .+|+||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999998788999999997532   22344556666552   4799999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~-~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~  145 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALM-FLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE  145 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCee
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.83  E-value=2.6e-20  Score=199.98  Aligned_cols=136  Identities=18%  Similarity=0.259  Sum_probs=119.7

Q ss_pred             hhhhcccCCceEEEEEEEccCC-EEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG-TQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g-~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|.....+ ..||+|++....   ....+.+.+|+.+  .++||||+++++++.+.+..++||||+
T Consensus        34 ~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~  113 (340)
T PTZ00426         34 FIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFV  113 (340)
T ss_pred             EEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCC
Confidence            3578999999999999875343 689999986532   2234567778777  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       114 ~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDLkp~NILl~~~~~ikL~DFG~a~  179 (340)
T PTZ00426        114 IGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFE-YLQS---LNIVYRDLKPENLLLDKDGFIKMTDFGFAK  179 (340)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEccCCCHHHEEECCCCCEEEecCCCCe
Confidence            99999999987788999999999999999999 9999   899999999999    78899999999986

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.83  E-value=3.9e-20  Score=195.03  Aligned_cols=136  Identities=23%  Similarity=0.420  Sum_probs=117.2

Q ss_pred             hhhhcccCCceEEEEEEEcc----------------CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEF----------------NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYC  597 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~----------------~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~  597 (678)
                      +.+.||+|+||.||+|....                .+..||+|.+.... .....+|.+|+..  .++|+||+++++++
T Consensus         9 ~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~   88 (304)
T cd05096           9 FKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVC   88 (304)
T ss_pred             eeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEE
Confidence            35789999999999997531                23479999997653 3345678999887  48999999999999


Q ss_pred             EcCCeeEEEEecCCCCCHHHhhcCC-------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC
Q 038969          598 DEDTNMGLIYEFMAKGNLEEHLSGA-------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS  658 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~~GsL~~~L~~~-------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl  658 (678)
                      .+.+..++||||+++|+|.+++...                   ..++|.++++++.|++.||+ |||+   .+|+||||
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~-~lH~---~~ivH~dl  164 (304)
T cd05096          89 VDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMK-YLSS---LNFVHRDL  164 (304)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHH-HHHH---CCccccCc
Confidence            9999999999999999999998542                   24788999999999999999 9999   88999999


Q ss_pred             CCCC----CCCcEEEEeeCCcc
Q 038969          659 SSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       659 k~~N----~~~~vkI~DFGlar  676 (678)
                      ||+|    +++.+||+|||+++
T Consensus       165 kp~Nill~~~~~~kl~DfG~~~  186 (304)
T cd05096         165 ATRNCLVGENLTIKIADFGMSR  186 (304)
T ss_pred             chhheEEcCCccEEECCCccce
Confidence            9999    77889999999986

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.83  E-value=1.9e-20  Score=200.51  Aligned_cols=137  Identities=26%  Similarity=0.429  Sum_probs=114.8

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcC-CeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDED-TNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~-~~~~LV  606 (678)
                      +.+.||+|+||.||+|...     ..++.||||++.... ....+.+.+|+.++  + +||||++++++|... ...++|
T Consensus        11 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (338)
T cd05102          11 LGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVI   90 (338)
T ss_pred             eeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEE
Confidence            3578999999999999742     234689999997643 23446788888773  5 899999999998764 468999


Q ss_pred             EecCCCCCHHHhhcCC--------------------------------------------------------------CC
Q 038969          607 YEFMAKGNLEEHLSGA--------------------------------------------------------------NT  624 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~--------------------------------------------------------------~~  624 (678)
                      |||+++|+|.+++...                                                              ..
T Consensus        91 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T cd05102          91 VEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSP  170 (338)
T ss_pred             EecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCC
Confidence            9999999999998642                                                              24


Q ss_pred             CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          625 LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       625 l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++.++++++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       171 l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~  223 (338)
T cd05102         171 LTMEDLICYSFQVARGME-FLAS---RKCIHRDLAARNILLSENNVVKICDFGLARD  223 (338)
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHH---CCEECCCCccceEEEcCCCcEEEeecccccc
Confidence            888999999999999999 9999   899999999999    788999999999863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2e-21  Score=191.31  Aligned_cols=137  Identities=18%  Similarity=0.314  Sum_probs=118.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEE-EEcCCe-eEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGY-CDEDTN-MGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~-~~~~~~-~~LV~Ey~~  611 (678)
                      .++||+|.||+||++....+|..||.|.++-.  +.+..+...+|+.++  ++|||||+++++ +.+..+ ++||||||.
T Consensus        24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~  103 (375)
T KOG0591|consen   24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCD  103 (375)
T ss_pred             HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhc
Confidence            47899999999999999889999999998743  445567788999884  999999999984 444455 899999999


Q ss_pred             CCCHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLS----GANTLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .|+|...++    +++.+++..++++..|+++||. .+|... ++  |+||||||.|    ..+.+||+||||+|
T Consensus       104 ~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~-~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r  176 (375)
T KOG0591|consen  104 AGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALY-HCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGR  176 (375)
T ss_pred             ccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHH-HHhccc-cccceeeccCcchheEEcCCCceeeccchhHh
Confidence            999999886    2378999999999999999999 999833 34  8999999999    88999999999987

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.83  E-value=3.5e-20  Score=191.53  Aligned_cols=136  Identities=21%  Similarity=0.357  Sum_probs=119.6

Q ss_pred             hhhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|.+.   ..+..||+|.++... ......|.+|+..+  ++||||++++|++..++..+|||||+
T Consensus         9 ~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   88 (266)
T cd05064           9 IERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYM   88 (266)
T ss_pred             EeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeC
Confidence            4578999999999999864   245689999998653 23346788898874  88999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|++.||+ |||+   .+++||||||+|    .++.+|++|||+++
T Consensus        89 ~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~-~lH~---~~iiH~dikp~nili~~~~~~~l~dfg~~~  155 (266)
T cd05064          89 SNGALDSFLRKHEGQLVAGQLMGMLPGLASGMK-YLSE---MGYVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeeccccHhhEEEcCCCcEEECCCcccc
Confidence            999999999764 57899999999999999999 9999   899999999999    78899999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=8.5e-21  Score=203.34  Aligned_cols=134  Identities=22%  Similarity=0.285  Sum_probs=122.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|+.|.||.+.....++.||||++........+-..+|+.++  .+|+|||.++..+..++++|+|||||++|+|.
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLT  358 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLT  358 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchh
Confidence            5789999999999998878999999999887666666778898885  89999999999998899999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +.+.. ..+++.++..|++++++||+ |||.   .+|||||||.+|    .++.+||+|||+|..
T Consensus       359 DvVt~-~~~~E~qIA~Icre~l~aL~-fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFcaq  418 (550)
T KOG0578|consen  359 DVVTK-TRMTEGQIAAICREILQGLK-FLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQ  418 (550)
T ss_pred             hhhhc-ccccHHHHHHHHHHHHHHHH-HHHh---cceeeeccccceeEeccCCcEEEeeeeeeec
Confidence            98875 56999999999999999999 9999   999999999999    888899999999863

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.83  E-value=2.2e-21  Score=213.44  Aligned_cols=134  Identities=27%  Similarity=0.427  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .++||+|+||+||+|.+-..|+    +||+|++... +.+..+++..|+..+  ++|+||++|+|+|.... +.||++||
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~m  779 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQLM  779 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHhc
Confidence            3789999999999999854554    7999999765 445568899998874  99999999999998755 88999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +.|+|.+|++.+ ..+-....+.|+.|||+||. |||.   +++|||||.++|    +..++||.|||+||
T Consensus       780 P~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~-YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgla~  846 (1177)
T KOG1025|consen  780 PLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMK-YLEE---QRLVHRDLAARNVLVKSPNHVKITDFGLAK  846 (1177)
T ss_pred             ccchHHHHHHHhhccccHHHHHHHHHHHHHHHH-HHHh---cchhhhhhhhhheeecCCCeEEEEecchhh
Confidence            999999999865 67899999999999999999 9998   999999999999    78899999999997

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.83  E-value=3.5e-20  Score=196.97  Aligned_cols=135  Identities=21%  Similarity=0.263  Sum_probs=117.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|....+++.||||+++...   ......+..|...   ..+||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36899999999999998778899999997642   1223344455544   26899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~-~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQ-FLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKE  145 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceE
Confidence            999999987678999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PHA02988 hypothetical protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=193.39  Aligned_cols=145  Identities=18%  Similarity=0.301  Sum_probs=122.0

Q ss_pred             cccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh---HHHHHHHHHH--hcCCCCcccEEEEEE
Q 038969          524 KFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQY--IVHHKNLTTLVGYCD  598 (678)
Q Consensus       524 ~fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~---~~~f~~Ev~~--~l~H~NIv~l~g~~~  598 (678)
                      .++.+|++..+   ...||+|++|.||+|..  +|+.||||.++......   .+.|.+|+..  .++||||++++|++.
T Consensus        14 ~i~~~~i~~~~---~~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~   88 (283)
T PHA02988         14 CIESDDIDKYT---SVLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFII   88 (283)
T ss_pred             ecCHHHcCCCC---CeEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEE
Confidence            34555553322   15799999999999987  78999999997653322   4678889888  489999999999987


Q ss_pred             c----CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          599 E----DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       599 ~----~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      +    ....++||||+++|+|.+++.....++|...++++.|++.||. |||+.  .+++||||||+|    +++.+||+
T Consensus        89 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~-~lH~~--~~~~Hrdlkp~nill~~~~~~kl~  165 (283)
T PHA02988         89 DIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLY-NLYKY--TNKPYKNLTSVSFLVTENYKLKII  165 (283)
T ss_pred             ecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHH-HHHhc--CCCCCCcCChhhEEECCCCcEEEc
Confidence            6    4568999999999999999988788999999999999999999 99972  368899999999    78899999


Q ss_pred             eeCCcc
Q 038969          671 TFSIIK  676 (678)
Q Consensus       671 DFGlar  676 (678)
                      |||+++
T Consensus       166 dfg~~~  171 (283)
T PHA02988        166 CHGLEK  171 (283)
T ss_pred             ccchHh
Confidence            999987

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.83  E-value=8.9e-21  Score=207.44  Aligned_cols=135  Identities=22%  Similarity=0.344  Sum_probs=117.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~LV~Ey  609 (678)
                      +.||+|+||.||+|+.+..|+.||||.+.... ....+...+|+++  +++|+|||++++.-++..      ...+||||
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEy   98 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEY   98 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEee
Confidence            68999999999999988899999999998753 3345566777777  489999999999875544      57899999


Q ss_pred             CCCCCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCC--cEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKN--IVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~--~vkI~DFGlar~  677 (678)
                      |++|||+..|...   ..|++.+.+.+..+++.||. |||+   .+|+||||||.|      +++  .-||+|||.||+
T Consensus        99 C~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~-~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Are  173 (732)
T KOG4250|consen   99 CSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALR-HLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARE  173 (732)
T ss_pred             cCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHH-HHHH---cCceeccCCCCcEEEeecCCCceEEeeeccccccc
Confidence            9999999999864   67999999999999999999 9998   899999999999      323  469999999996

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.83  E-value=3.5e-20  Score=201.68  Aligned_cols=136  Identities=25%  Similarity=0.389  Sum_probs=116.9

Q ss_pred             hhhhcccCCceEEEEEEE-----ccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||+|..     ...+..||||+++... ....+.+.+|+.++  + +||||++++++|...+..++||
T Consensus        39 ~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~  118 (375)
T cd05104          39 FGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVIT  118 (375)
T ss_pred             hhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeee
Confidence            458999999999999974     2245689999997543 33456788888874  5 8999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC-----------------------------------------------------------------
Q 038969          608 EFMAKGNLEEHLSGA-----------------------------------------------------------------  622 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-----------------------------------------------------------------  622 (678)
                      |||++|+|.++++..                                                                 
T Consensus       119 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
T cd05104         119 EYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQD  198 (375)
T ss_pred             hhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccc
Confidence            999999999998532                                                                 


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          623 ----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       623 ----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                                ..++|..+++++.|+++||+ |||+   .+|+||||||+|    ++..+||+|||+|+
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~  262 (375)
T cd05104         199 VTSEILEEDELALDTEDLLSFSYQVAKGMS-FLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  262 (375)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCchhhEEEECCCcEEEecCccce
Confidence                      14789999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.83  E-value=3.9e-20  Score=196.51  Aligned_cols=135  Identities=22%  Similarity=0.251  Sum_probs=117.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|+.+.+|+.||+|.++...   ......+..|...   ..+|+||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46899999999999998788999999997542   1223344555544   25899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQ-FLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKE  145 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCee
Confidence            999999987778999999999999999999 9999   899999999999    778999999999873

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.83  E-value=3.5e-20  Score=201.34  Aligned_cols=135  Identities=19%  Similarity=0.207  Sum_probs=118.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.+|+|++....   ....+.+..|+.+  .++||||+++++++..++..++||||+++
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05621          48 VKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCC
Confidence            368999999999999998788999999986532   2233456677766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.. ..+++.++..++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       128 g~L~~~l~~-~~~~~~~~~~~~~qil~aL~-~LH~---~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~  191 (370)
T cd05621         128 GDLVNLMSN-YDVPEKWAKFYTAEVVLALD-AIHS---MGLIHRDVKPDNMLLDKHGHLKLADFGTCMK  191 (370)
T ss_pred             CcHHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHEEECCCCCEEEEeccccee
Confidence            999999975 46899999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.83  E-value=2.1e-20  Score=209.98  Aligned_cols=137  Identities=21%  Similarity=0.301  Sum_probs=120.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC-CCCcccEEEE-EEc------CCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH-HKNLTTLVGY-CDE------DTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~-H~NIv~l~g~-~~~------~~~~~LV~  607 (678)
                      ++.|.+|||+.||.+.....|.++|+|++-..+.+..+...+||.++  ++ |+|||.+++. ...      .-+.+|.|
T Consensus        42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLm  121 (738)
T KOG1989|consen   42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLM  121 (738)
T ss_pred             EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeeh
Confidence            47899999999999999855599999999877888888999999884  55 9999999993 211      24688999


Q ss_pred             ecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          608 EFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |||++|.|-++|..+  ..|++.++++|+.|+|+|++ +||. |+++|||||||-+|    .+++.||||||-|.
T Consensus       122 EyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa-~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFGSat  194 (738)
T KOG1989|consen  122 EYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVA-AMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFGSAT  194 (738)
T ss_pred             hhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHH-HHhc-CCCccchhhhhhhheEEcCCCCEEeCcccccc
Confidence            999999999999854  66999999999999999999 9998 88999999999999    88899999999775

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.82  E-value=4.8e-20  Score=192.67  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+|+.||||.+....   ......+.+|+.+  .++|+|++++++++.+.+..++|||||++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCC
Confidence            367999999999999988789999999987542   2233457778777  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++...  ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        85 g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~  150 (285)
T cd05631          85 GDLKFHIYNMGNPGFDEQRAIFYAAELCCGLE-DLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAV  150 (285)
T ss_pred             CcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcE
Confidence            9999888542  46899999999999999999 9999   899999999999    77899999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.82  E-value=1.5e-20  Score=199.56  Aligned_cols=135  Identities=24%  Similarity=0.392  Sum_probs=117.7

Q ss_pred             ccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe
Q 038969          525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN  602 (678)
Q Consensus       525 fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~  602 (678)
                      +.+++|.+.     +-||+|+.|.||+|++  .++.||||+++.....       +|.-  .++|+||+.|.|+|.....
T Consensus       121 iPFe~IsEL-----eWlGSGaQGAVF~Grl--~netVAVKKV~elkET-------dIKHLRkLkH~NII~FkGVCtqsPc  186 (904)
T KOG4721|consen  121 IPFEEISEL-----EWLGSGAQGAVFLGRL--HNETVAVKKVRELKET-------DIKHLRKLKHPNIITFKGVCTQSPC  186 (904)
T ss_pred             CCHHHhhhh-----hhhccCcccceeeeec--cCceehhHHHhhhhhh-------hHHHHHhccCcceeeEeeeecCCce
Confidence            445555443     5799999999999998  5789999988653322       2222  4899999999999999999


Q ss_pred             eEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          603 MGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|||||||+.|-|++.|+....++....+.+..+||.||. |||.   ..|||||||.-|    .+..|||+|||-+|+
T Consensus       187 yCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~-YLH~---hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e  261 (904)
T KOG4721|consen  187 YCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMN-YLHL---HKIIHRDLKSPNILISYDDVVKISDFGTSKE  261 (904)
T ss_pred             eEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhH-HHHH---hhHhhhccCCCceEeeccceEEeccccchHh
Confidence            9999999999999999999899999999999999999999 9999   889999999999    788999999998875

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.82  E-value=5.4e-20  Score=196.42  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+++...+++.||+|+++...   ....+.+..|+.++   .+|+||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            36899999999999998788999999997642   22345567776662   4799999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~-~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~  145 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALN-FLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKE  145 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHEEEeCCCCEEEecccccee
Confidence            999999987678999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.82  E-value=4.1e-20  Score=196.99  Aligned_cols=137  Identities=19%  Similarity=0.226  Sum_probs=118.9

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||++....+|+.||+|++....   ....+.+..|+.++   .+|++|+++++++...+..++||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~   83 (323)
T cd05615           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYV   83 (323)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCC
Confidence            4578999999999999988789999999997542   22334566666552   45788899999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        84 ~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~-~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~  150 (323)
T cd05615          84 NGGDLMYHIQQVGKFKEPQAVFYAAEISVGLF-FLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  150 (323)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHeEECCCCCEEEeccccccc
Confidence            99999999987778999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.82  E-value=5.7e-20  Score=195.95  Aligned_cols=135  Identities=22%  Similarity=0.231  Sum_probs=117.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+++...+++.||+|++....   .....++..|...   .++|+||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36899999999999998788899999997532   1223344445433   38899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~  145 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALG-YLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKE  145 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCcc
Confidence            999999987777899999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.82  E-value=6e-20  Score=198.70  Aligned_cols=135  Identities=24%  Similarity=0.265  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||+|++....   ......+.+|+.+  .++|+||+++++.+..++..+|||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPG   85 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            368999999999999998788999999997532   2234556777766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~l~~~~~l~~~~~~~~~~qi~~~L~-~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~~~  149 (360)
T cd05627          86 GDMMTLLMKKDTLSEEATQFYIAETVLAID-AIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGLCT  149 (360)
T ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEccCCCHHHEEECCCCCEEEeeccCCc
Confidence            999999987778999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.82  E-value=4e-20  Score=190.58  Aligned_cols=136  Identities=30%  Similarity=0.478  Sum_probs=117.6

Q ss_pred             hhhcccCCceEEEEEEEc----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLE----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||.|.||.||+|.+.    ..+..|+||+++... ....++|.+|++.+  ++|+||++++|+|...+..++||||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            468999999999999986    235789999997643 34578899998883  89999999999999888899999999


Q ss_pred             CCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.++|...  ..+++.++++|+.|+|+||+ |||+   .+++|+||+++|    +++.+||+|||+++.
T Consensus        84 ~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~-~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen   84 PGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALS-YLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSRP  152 (259)
T ss_dssp             TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHH-HHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGEE
T ss_pred             cccccccccccccccccccccccccccccccccc-cccc---ccccccccccccccccccccccccccccccc
Confidence            999999999875  78999999999999999999 9999   789999999999    788999999999864

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.82  E-value=6.7e-20  Score=195.33  Aligned_cols=135  Identities=24%  Similarity=0.309  Sum_probs=117.7

Q ss_pred             hhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.||+|+||.||+++..   ..++.||||+++...    ......+.+|+.+  .++||||+++++++..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            57999999999999863   357899999997532    1223456677766  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++|+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||++++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  149 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALE-HLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCKE  149 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCee
Confidence            999999999987778899999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.82  E-value=7.7e-20  Score=194.31  Aligned_cols=135  Identities=23%  Similarity=0.252  Sum_probs=117.7

Q ss_pred             hhcccCCceEEEEEEEc---cCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.||+|+||.||+++..   .+|+.||+|++.....  .....+..|+.+  .++|+||+++++++...+..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            46999999999998762   3678999999976422  233456667766  4899999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALD-HLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcc
Confidence            9999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.82  E-value=7.1e-20  Score=195.58  Aligned_cols=135  Identities=19%  Similarity=0.230  Sum_probs=120.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+|+.||+|+++....   ...+.+..|+.+  .++|+||+++++++.+.+..+|||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (330)
T cd05601           6 KSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPG   85 (330)
T ss_pred             EEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCC
Confidence            4789999999999999987899999999976422   234557777766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++... ..+++..+..++.|+++||+ |||+   .+|+||||||+|    ..+.+||+|||+|+
T Consensus        86 ~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~-~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~  150 (330)
T cd05601          86 GDLLSLLNRYEDQFDEDMAQFYLAELVLAIH-SVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSAA  150 (330)
T ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEcccCchHheEECCCCCEEeccCCCCe
Confidence            9999999865 67999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=8e-20  Score=195.42  Aligned_cols=135  Identities=20%  Similarity=0.223  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.||+|++...   .....+.|..|+.+  .++|+||+++++++...+..++||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVG   85 (331)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCC
Confidence            47899999999999999878999999999753   22234557777666  48999999999999999999999999999


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.. ...+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 ~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  150 (331)
T cd05597          86 GDLLTLLSKFEDRLPEDMARFYLAEMVLAID-SVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSCL  150 (331)
T ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEECCCCHHHEEECCCCCEEEEECCcee
Confidence            999999975 367899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.82  E-value=9.4e-20  Score=194.89  Aligned_cols=136  Identities=21%  Similarity=0.226  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.||+|.+....   ......+..|+..  .++|+||+++++++...+..++||||+++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~g   85 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVG   85 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            468999999999999998788999999987532   2233446666665  48899999999999999999999999999


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.. ...+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        86 g~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~-~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~  151 (331)
T cd05624          86 GDLLTLLSKFEDRLPEDMARFYIAEMVLAIH-SIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGSCLK  151 (331)
T ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCchHHEEEcCCCCEEEEeccceee
Confidence            999999976 367899999999999999999 9999   899999999999    778899999999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.8e-20  Score=201.56  Aligned_cols=135  Identities=20%  Similarity=0.298  Sum_probs=122.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+.|.|-.|++..+|+.+|||++....   .......++|+.+  ++.|||+++|+.+++.+.++|||.||+++
T Consensus        17 gkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~g   96 (786)
T KOG0588|consen   17 GKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPG   96 (786)
T ss_pred             cccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCC
Confidence            467999999999999998899999999997652   2224557788777  49999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.|.++|-.+.++++.++.+++.||..|+. |.|.   .+|+||||||+|    ...++||+|||+|.
T Consensus        97 GELFdylv~kG~l~e~eaa~ff~QIi~gv~-yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAs  160 (786)
T KOG0588|consen   97 GELFDYLVRKGPLPEREAAHFFRQILDGVS-YCHA---FNICHRDLKPENLLLDVKNNIKIADFGMAS  160 (786)
T ss_pred             chhHHHHHhhCCCCCHHHHHHHHHHHHHHH-HHhh---hcceeccCCchhhhhhcccCEeeeccceee
Confidence            999999999899999999999999999999 9999   899999999999    66679999999985

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.82  E-value=1.3e-19  Score=188.90  Aligned_cols=132  Identities=20%  Similarity=0.299  Sum_probs=115.8

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||++....+|+.||+|.+.....   ...+.+..|+.+  .++|+||+++.+++..+...++|||||++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            6999999999999887899999999975422   233556777766  48999999999999999999999999999999


Q ss_pred             HHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++..    ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  145 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLE-HLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAV  145 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEeeCccce
Confidence            988743    256999999999999999999 9999   899999999999    77889999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.82  E-value=8.7e-20  Score=194.38  Aligned_cols=136  Identities=19%  Similarity=0.210  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+...+++.||||.+.....   ...+.+..|...+   .+|++|+++++++...+..++||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCC
Confidence            4789999999999999887788999999975421   2233445555442   478999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus        85 ~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~  150 (323)
T cd05616          85 GGDLMYQIQQVGRFKEPHAVFYAAEIAIGLF-FLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  150 (323)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEecCCCHHHeEECCCCcEEEccCCCcee
Confidence            9999999987778999999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.82  E-value=8.8e-20  Score=194.42  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=118.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|+....++.||||++....   ....+.+..|+..  .+ +|++|+++++++...+..++||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (324)
T cd05587           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (324)
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCC
Confidence            3478999999999999988778899999997542   2334556667665  34 4567889999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05587          84 NGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLF-FLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCKE  150 (324)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHeEEcCCCCEEEeecCccee
Confidence            99999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.81  E-value=8.7e-20  Score=194.47  Aligned_cols=135  Identities=19%  Similarity=0.288  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH-----hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY-----IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~-----~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||++....+|+.||||+++...   ....+.+..|+..     .++||||+++++++..++..++||||
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~   83 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY   83 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence            468999999999999988788999999997542   2233455666544     26799999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++|+|..+++. ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        84 ~~~~~L~~~~~~-~~l~~~~~~~~~~qi~~al~-~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05589          84 AAGGDLMMHIHT-DVFSEPRAVFYAACVVLGLQ-YLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLCKE  150 (324)
T ss_pred             CCCCcHHHHhhc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCeEecCCCHHHeEECCCCcEEeCcccCCcc
Confidence            999999999875 57999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.81  E-value=1.7e-19  Score=193.15  Aligned_cols=136  Identities=17%  Similarity=0.212  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++....++..+|+|.+... .......+.+|++.  .++|+||+++++++...+..+|||||+++|+
T Consensus        10 ~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   89 (333)
T cd06650          10 ISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   89 (333)
T ss_pred             eccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCc
Confidence            47899999999999999878899999998764 23345678888887  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++..+..++.|+++||+ |||+.  .+|+||||||+|    +++.+||+|||+++
T Consensus        90 L~~~l~~~~~~~~~~~~~~~~~l~~~l~-~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  152 (333)
T cd06650          90 LDQVLKKAGRIPEQILGKVSIAVIKGLT-YLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcch
Confidence            9999987778999999999999999999 99972  369999999999    77889999999986

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=6e-20  Score=197.52  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=121.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||+++...   ......+..|+..  .++|+||+++++++.+++..++||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (350)
T cd05573           6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPG   85 (350)
T ss_pred             EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCC
Confidence            468999999999999998789999999997542   1334567777776  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        86 ~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~  150 (350)
T cd05573          86 GDLMNLLIRKDVFPEETARFYIAELVLALD-SVHK---LGFIHRDIKPDNILIDADGHIKLADFGLCKK  150 (350)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHeEECCCCCEEeecCCCCcc
Confidence            999999987778999999999999999999 9999   899999999999    888999999999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.81  E-value=1e-19  Score=193.43  Aligned_cols=135  Identities=21%  Similarity=0.256  Sum_probs=118.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||++....+++.||||.++...   ......+..|+.++   .+|+||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999998778899999997542   22334555665552   3799999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|..++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~-~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  145 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQ-FLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKE  145 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEccCCCHHHeEECCCCcEEecccCCCee
Confidence            999999987778999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.81  E-value=1.1e-19  Score=197.49  Aligned_cols=135  Identities=19%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.||+|.+....   ....+.+..|+.+  .++||||+++++++.+.+..++||||+++
T Consensus        48 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05596          48 IKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCC
Confidence            378999999999999998788999999996532   2233456677766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.. ..++...+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus       128 g~L~~~l~~-~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~  191 (370)
T cd05596         128 GDLVNLMSN-YDIPEKWARFYTAEVVLALD-AIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  191 (370)
T ss_pred             CcHHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHEEEcCCCCEEEEeccceee
Confidence            999999975 46889999999999999999 9999   899999999999    889999999999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.81  E-value=1.1e-19  Score=197.51  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.+|+|++....   ....+.+..|+.+  .++||||+++++++...+..++||||+++
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (371)
T cd05622          48 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPG  127 (371)
T ss_pred             EEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            378999999999999998788999999986532   2233456667666  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.. ..++...+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       128 g~L~~~~~~-~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~  191 (371)
T cd05622         128 GDLVNLMSN-YDVPEKWARFYTAEVVLALD-AIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  191 (371)
T ss_pred             CcHHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCEEeCCCCHHHEEECCCCCEEEEeCCceeE
Confidence            999999975 45899999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.81  E-value=2.1e-19  Score=183.75  Aligned_cols=134  Identities=24%  Similarity=0.425  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|....+++.||+|.+.... ......|.+|++.  .++|+||++++++|......++||||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            46899999999999998789999999886542 3345678888877  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  142 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGME-YLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSR  142 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccccccchheEEEcCCCcEEECccccCc
Confidence            9999754 46899999999999999999 9999   899999999999    77889999999976

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-19  Score=188.85  Aligned_cols=135  Identities=21%  Similarity=0.276  Sum_probs=122.7

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.++||.|..+.||+|+....+..||||++..+... ...+.++|++.  +++||||++++..|..+..+|+||.||.+|
T Consensus        30 L~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~G  109 (516)
T KOG0582|consen   30 LQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGG  109 (516)
T ss_pred             EEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCC
Confidence            347899999999999998878899999999876433 35788999988  499999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ++.+.++..  ..+++..+..|.+++++||. |||+   .+.||||||+.|    .++.|||+|||.+
T Consensus       110 S~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~-YLH~---~G~IHRdvKAgnILi~~dG~VkLadFgvs  173 (516)
T KOG0582|consen  110 SLLDIIKTYYPDGLEEASIATILREVLKALD-YLHQ---NGHIHRDVKAGNILIDSDGTVKLADFGVS  173 (516)
T ss_pred             cHHHHHHHHccccccHHHHHHHHHHHHHHHH-HHHh---cCceecccccccEEEcCCCcEEEcCceee
Confidence            999999754  56999999999999999999 9999   899999999999    9999999999965

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.81  E-value=1e-19  Score=198.05  Aligned_cols=137  Identities=26%  Similarity=0.424  Sum_probs=116.6

Q ss_pred             hhhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||+|....     ++..||||+++... ......+.+|+.++  + +|+||++++++|...+..++||
T Consensus        42 ~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~  121 (374)
T cd05106          42 FGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVIT  121 (374)
T ss_pred             ehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeH
Confidence            45789999999999988532     33579999997643 33345678888773  5 8999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC-----------------------------------------------------------------
Q 038969          608 EFMAKGNLEEHLSGA-----------------------------------------------------------------  622 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-----------------------------------------------------------------  622 (678)
                      ||+++|+|.++++..                                                                 
T Consensus       122 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (374)
T cd05106         122 EYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEE  201 (374)
T ss_pred             hhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchh
Confidence            999999999998531                                                                 


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          623 -----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       623 -----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                           ..+++.++++|+.|+++||+ |||+   .+|+||||||+|    ++..+||+|||+|+.
T Consensus       202 ~~~~~~~l~~~~~~~i~~qi~~aL~-yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~  261 (374)
T cd05106         202 DTEDSWPLDLDDLLRFSSQVAQGMD-FLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARD  261 (374)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHH-HHHH---CCEEeccCchheEEEeCCCeEEEeeceeeee
Confidence                 24788999999999999999 9999   899999999999    788899999999874

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=1.7e-19  Score=192.64  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--h-c--CCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--I-V--HHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~-l--~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ||+|+||.||+|+...+++.||||++.....   .....+..|..+  . .  +||||+++++++......++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            6999999999999987899999999965322   122333444433  2 3  799999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~-~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~  145 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALE-HLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKA  145 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcC
Confidence            999999987788999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.81  E-value=2.9e-19  Score=191.06  Aligned_cols=135  Identities=18%  Similarity=0.205  Sum_probs=121.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+++...+|..+|+|.+.... ....+++.+|++.  .++|+||+++++++...+..++||||+++|+|
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L   90 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL   90 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcH
Confidence            67999999999999998788999999997653 3345678889887  38999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.....+++..+..++.|+++||. |||+.  .+|+||||||+|    +++.+||+|||+++
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~i~~~l~-~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  152 (331)
T cd06649          91 DQVLKEAKRIPEEILGKVSIAVLRGLA-YLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (331)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccc
Confidence            999987778999999999999999999 99972  359999999999    78899999999986

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.81  E-value=2e-19  Score=201.97  Aligned_cols=137  Identities=12%  Similarity=0.141  Sum_probs=120.2

Q ss_pred             hhhhcccCCceEEEEEEEccC-CEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN-GTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~-g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.+.||+|++|.||++....+ +..||+|.+..........+..|+..  .++|||||++++++...+..+|||||+++|
T Consensus        71 ~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg  150 (478)
T PTZ00267         71 LTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGG  150 (478)
T ss_pred             EEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCC
Confidence            347899999999999987656 67899998766555555667788877  489999999999999999999999999999


Q ss_pred             CHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.++|..    ...+++.++..++.|++.||+ |||+   .+|+||||||+|    ..+.+||+|||+|+.
T Consensus       151 ~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~-~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~~  218 (478)
T PTZ00267        151 DLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALD-EVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQ  218 (478)
T ss_pred             CHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCcee
Confidence            99998753    256899999999999999999 9999   899999999999    788999999999873

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=6.8e-20  Score=200.07  Aligned_cols=137  Identities=20%  Similarity=0.296  Sum_probs=120.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--h-cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--I-VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      |.++||+|.||+|+++.++.+++.+|||++++..   ....+..+.|.++  + -+||.|+.|+.+++.+++++.||||+
T Consensus       372 ~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~  451 (694)
T KOG0694|consen  372 LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYV  451 (694)
T ss_pred             EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEec
Confidence            4689999999999999999889999999998863   3345556666665  2 46999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcccC
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKNN  678 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~~  678 (678)
                      .||++..+.+ ...+++..+.-+|..|+.||+ |||+   .+||+||||.+|    .++++||+||||||+.
T Consensus       452 ~Ggdm~~~~~-~~~F~e~rarfyaAev~l~L~-fLH~---~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~  518 (694)
T KOG0694|consen  452 AGGDLMHHIH-TDVFSEPRARFYAAEVVLGLQ-FLHE---NGIIYRDLKLDNLLLDTEGHVKIADFGLCKEG  518 (694)
T ss_pred             CCCcEEEEEe-cccccHHHHHHHHHHHHHHHH-HHHh---cCceeeecchhheEEcccCcEEeccccccccc
Confidence            9999554444 368999999999999999999 9999   999999999999    8999999999999973

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.81  E-value=1.8e-19  Score=188.71  Aligned_cols=134  Identities=19%  Similarity=0.289  Sum_probs=117.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||+|.++.... .....+.+|+.+  .++|+||+++++++...+..++||||++ |+
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~   88 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-SD   88 (288)
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-cC
Confidence            3689999999999999887889999999875432 233466778777  4899999999999999999999999997 49


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        89 l~~~l~~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~  151 (288)
T cd07871          89 LKQYLDNCGNLMSMHNVKIFMFQLLRGLS-YCHK---RKILHRDLKPQNLLINEKGELKLADFGLAR  151 (288)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEECCCCCEEECcCccee
Confidence            99998754 45899999999999999999 9999   899999999999    77899999999986

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.81  E-value=2.1e-19  Score=186.82  Aligned_cols=133  Identities=18%  Similarity=0.271  Sum_probs=112.6

Q ss_pred             hcccCCceEEEEEEEccC------------------------CEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccE
Q 038969          540 VIGKGGFGTVYHGYLEFN------------------------GTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTL  593 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~------------------------g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l  593 (678)
                      .||+|+||.||+|....+                        ...||+|++.........+|..|+..  .++|+||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            589999999999985311                        13589999976554445667777766  4899999999


Q ss_pred             EEEEEcCCeeEEEEecCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC----
Q 038969          594 VGYCDEDTNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK----  664 (678)
Q Consensus       594 ~g~~~~~~~~~LV~Ey~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~----  664 (678)
                      +++|.+....++||||+++|+|..++.. ...+++..+++++.|+++||+ |||+   .+|+||||||+|    +.    
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~iiH~dlkp~Nill~~~~~~~  157 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALS-YLED---KNLVHGNVCAKNILLARLGLAE  157 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHc---CCccCCCCCcccEEEeccCccc
Confidence            9999999999999999999999999975 367899999999999999999 9999   899999999999    22    


Q ss_pred             ---CcEEEEeeCCcc
Q 038969          665 ---NIVKLITFSIIK  676 (678)
Q Consensus       665 ---~~vkI~DFGlar  676 (678)
                         ..+|++|||+++
T Consensus       158 ~~~~~~kl~d~g~~~  172 (274)
T cd05076         158 GTSPFIKLSDPGVSF  172 (274)
T ss_pred             CccceeeecCCcccc
Confidence               248999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.81  E-value=3.7e-19  Score=183.59  Aligned_cols=135  Identities=19%  Similarity=0.250  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+...+++.||+|++..........+.+|+..  .++|+||+++++++..++..++||||+++|+|
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L   93 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSL   93 (267)
T ss_pred             hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcH
Confidence            4789999999999999877889999999976544445567778777  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++++....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~  154 (267)
T cd06646          94 QDIYHVTGPLSELQIAYVCRETLQGLA-YLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAA  154 (267)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEECCCCCEEECcCccce
Confidence            999987678999999999999999999 9999   899999999999    77889999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.80  E-value=2.3e-19  Score=190.36  Aligned_cols=133  Identities=25%  Similarity=0.401  Sum_probs=115.2

Q ss_pred             hhcccCCceEEEEEEEccCCE----EEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGT----QVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.||+|+||.||+|++..+++    .||+|.++... ....++|..|+..  .++|+||++++|+|... ..++|+||++
T Consensus        13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~~~   91 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMP   91 (316)
T ss_pred             eeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-CceeeeecCC
Confidence            689999999999998754444    48999997543 3445678888777  48999999999999764 5789999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++... ..+++..+++++.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        92 ~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~-~LH~---~~iiH~dlkp~Nill~~~~~~kl~DfG~a~  157 (316)
T cd05108          92 FGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN-YLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             CCCHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHHh---cCeeccccchhheEecCCCcEEEccccccc
Confidence            99999999864 56899999999999999999 9999   899999999999    77889999999987

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.80  E-value=2e-19  Score=192.48  Aligned_cols=135  Identities=21%  Similarity=0.227  Sum_probs=118.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++.+..++.+|+|++....   ......|..|+..  .++|+||+++++++.+.+..++||||+++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~   85 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVG   85 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCC
Confidence            478999999999999998778899999996532   2223446667666  48899999999999999999999999999


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.. ...+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~-~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a~  150 (332)
T cd05623          86 GDLLTLLSKFEDRLPEDMARFYLAEMVIAID-SVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCL  150 (332)
T ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCHHHEEECCCCCEEEeecchhe
Confidence            999999976 367899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.80  E-value=3.2e-19  Score=184.42  Aligned_cols=134  Identities=28%  Similarity=0.310  Sum_probs=113.7

Q ss_pred             hcccCCceEEEEEEEcc--CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLEF--NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|....  ....+|+|.+.... .....+|.+|+..  .++|+||+++++++......++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997642  23478999876543 2334567888776  4899999999999999999999999999999


Q ss_pred             HHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...     ...++...++++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLL-WLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHH-HHHh---cCEecccccHhheEecCCCcEEEeccccccc
Confidence            99999753     23568889999999999999 9999   899999999999    788999999999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.80  E-value=2.4e-19  Score=185.34  Aligned_cols=134  Identities=21%  Similarity=0.219  Sum_probs=120.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-----HHHHHHHHHHhcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-----YKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-----~~~f~~Ev~~~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|..|+||+++++..+...|+|++.......     +.+.++||..+++||.++.|++.++.....||+||||+||
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGG  162 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGG  162 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCc
Confidence            68999999999999998667899999998754322     3345666666899999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|...++.+  +.+++..+.-+|.+|.-||+ |||.   .+||.|||||+|    +++++.|+||-|+.
T Consensus       163 dL~~LrqkQp~~~fse~~aRFYaAEvl~ALE-YLHm---lGivYRDLKPENILvredGHIMLsDFDLS~  227 (459)
T KOG0610|consen  163 DLHSLRQKQPGKRFSESAARFYAAEVLLALE-YLHM---LGIVYRDLKPENILVREDGHIMLSDFDLSL  227 (459)
T ss_pred             cHHHHHhhCCCCccchhhHHHHHHHHHHHHH-HHHh---hceeeccCCcceeEEecCCcEEeeeccccc
Confidence            999999876  78999999999999999999 9999   999999999999    99999999999875

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=9.1e-20  Score=186.19  Aligned_cols=134  Identities=17%  Similarity=0.284  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEecc--CchhhHHHHHHHHHHh--cCCCCcccEEEEEEc-----CCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSA--SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE-----DTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~--~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~-----~~~~~LV~Ey  609 (678)
                      +.||+|+||.|..+..+.+|+.||||++..  ......++-.+|+..+  ++|+||+.+......     -+..|+|+|+
T Consensus        28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~el  107 (359)
T KOG0660|consen   28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFEL  107 (359)
T ss_pred             ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhH
Confidence            679999999999999998999999999973  3445567778898884  899999999998854     4568999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+ -+|...++.++.|+......+..|+++||. |+|+   .+|+||||||+|    .+..+||+||||||-
T Consensus       108 Me-tDL~~iik~~~~L~d~H~q~f~YQiLrgLK-yiHS---AnViHRDLKPsNll~n~~c~lKI~DFGLAR~  174 (359)
T KOG0660|consen  108 ME-TDLHQIIKSQQDLTDDHAQYFLYQILRGLK-YIHS---ANVIHRDLKPSNLLLNADCDLKICDFGLARY  174 (359)
T ss_pred             Hh-hHHHHHHHcCccccHHHHHHHHHHHHHhcc-hhhc---ccccccccchhheeeccCCCEEeccccceee
Confidence            95 499999998777999999999999999999 9999   899999999999    888999999999984

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.80  E-value=3.4e-19  Score=195.33  Aligned_cols=136  Identities=24%  Similarity=0.376  Sum_probs=115.9

Q ss_pred             hhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHHh--cC-CCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQYI--VH-HKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....     .+..||||++.... ....+.|.+|+..+  +. ||||++++++|.+.+..+||||
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E  121 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITE  121 (400)
T ss_pred             hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEE
Confidence            4789999999999998631     23579999997643 33456788898873  64 9999999999999999999999


Q ss_pred             cCCCCCHHHhhcCC------------------------------------------------------------------
Q 038969          609 FMAKGNLEEHLSGA------------------------------------------------------------------  622 (678)
Q Consensus       609 y~~~GsL~~~L~~~------------------------------------------------------------------  622 (678)
                      ||++|+|.++|+..                                                                  
T Consensus       122 y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (400)
T cd05105         122 YCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYS  201 (400)
T ss_pred             ecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhh
Confidence            99999999988531                                                                  


Q ss_pred             ------------------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          623 ------------------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       623 ------------------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                                                    ..+++.++++++.|+++||+ |||+   .+|+||||||+|    ++..+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivH~dikp~Nill~~~~~~k  277 (400)
T cd05105         202 DIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGME-FLAS---KNCVHRDLAARNVLLAQGKIVK  277 (400)
T ss_pred             hcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCChHhEEEeCCCEEE
Confidence                                          24788999999999999999 9999   899999999999    778899


Q ss_pred             EEeeCCccc
Q 038969          669 LITFSIIKN  677 (678)
Q Consensus       669 I~DFGlar~  677 (678)
                      |+|||+++.
T Consensus       278 L~DfGla~~  286 (400)
T cd05105         278 ICDFGLARD  286 (400)
T ss_pred             EEeCCccee
Confidence            999999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.80  E-value=2.5e-19  Score=193.33  Aligned_cols=131  Identities=22%  Similarity=0.295  Sum_probs=115.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+.+  .++|+||+++++++...+..++||||+++|+
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  158 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGS  158 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCc
Confidence            367999999999999988789999999996543 2335678888887  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+.    ...++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus       159 L~~~----~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        159 LEGT----HIADEQFLADVARQILSGIA-YLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             cccc----ccCCHHHHHHHHHHHHHHHH-HHHH---CCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            8754    34578888999999999999 9999   899999999999    78899999999986

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.80  E-value=4.3e-19  Score=182.04  Aligned_cols=133  Identities=22%  Similarity=0.395  Sum_probs=118.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||++..+ ++..+|+|.+.... ....+|.+|+..  .++|+||+++++++...+..++||||+++|+|
T Consensus         9 ~~~lg~G~~~~vy~~~~~-~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L   86 (256)
T cd05114           9 MKELGSGQFGVVHLGKWR-AQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCL   86 (256)
T ss_pred             eeEecCCcCceEEEEEec-cCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcH
Confidence            468999999999999886 67789999986543 234578888777  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++++.. ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~  148 (256)
T cd05114          87 LNYLRQRQGKLSKDMLLSMCQDVCEGME-YLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTR  148 (256)
T ss_pred             HHHHHhCccCCCHHHHHHHHHHHHHHHH-HHHH---CCccccccCcceEEEcCCCeEEECCCCCcc
Confidence            9999753 56899999999999999999 9999   899999999999    78889999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=2.6e-19  Score=192.91  Aligned_cols=136  Identities=18%  Similarity=0.315  Sum_probs=121.5

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchh---hHHHHHHHHHHh--cC-CCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ---GYKQFQAEVQYI--VH-HKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~---~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|.||.||+++.+.+|+.+|+|.+......   ......+|+.++  +. |||||.+.+.++.....++|||++
T Consensus        39 l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~  118 (382)
T KOG0032|consen   39 LGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELC  118 (382)
T ss_pred             ehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEec
Confidence            347899999999999999978999999999775432   345788999884  66 999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------C--CCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------H--KNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~--~~~vkI~DFGlar~  677 (678)
                      .+|.|.+.+... .+++.++..++.|++.++. |+|+   .+|+||||||+|      +  ...+|++|||+|+.
T Consensus       119 ~GGeLfd~i~~~-~~sE~da~~~~~~il~av~-~lH~---~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~  188 (382)
T KOG0032|consen  119 EGGELFDRIVKK-HYSERDAAGIIRQILEAVK-YLHS---LGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKF  188 (382)
T ss_pred             CCchHHHHHHHc-cCCHHHHHHHHHHHHHHHH-HHHh---CCceeccCCHHHeeeccccCCCCcEEEeeCCCceE
Confidence            999999999865 4999999999999999999 9999   999999999999      2  35899999999873

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.80  E-value=4.8e-20  Score=199.49  Aligned_cols=138  Identities=21%  Similarity=0.328  Sum_probs=122.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC----chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCe--eEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS----SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTN--MGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~----~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~--~~LV~E  608 (678)
                      |.++||+|+|-+||+|.+...|.+||--.++..    +....+.|..|+.++  ++|+|||+++.++.+...  .-+|+|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            567899999999999999888889986544332    344568899999985  999999999999876554  778999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      .|..|+|+.|+++.+.++.+.+..||+||++||. |||+ ..|+|||||||..|     ..+.|||+|+|||.
T Consensus       124 L~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~-yLHs-~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLV-YLHS-QDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             cccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhh-hhhc-CCCCccccccccceEEEcCCcCceeecchhHHH
Confidence            9999999999998889999999999999999999 9998 67899999999999     78899999999986

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=3.4e-19  Score=186.23  Aligned_cols=134  Identities=20%  Similarity=0.282  Sum_probs=117.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||++....+++.||+|.+.....   .....+.+|+.+  .++|+||+++++++..++..++||||+++|
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGG   85 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCC
Confidence            679999999999999877889999999975422   223456778777  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +.+.++|+|||+++
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05605          86 DLKFHIYNMGNPGFDEERAVFYAAEITCGLE-DLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             cHHHHHHhcCcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCce
Confidence            999988643  46999999999999999999 9999   899999999999    77899999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.80  E-value=3.9e-19  Score=182.11  Aligned_cols=133  Identities=20%  Similarity=0.355  Sum_probs=114.4

Q ss_pred             hhcccCCceEEEEEEEccCC----------EEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNG----------TQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g----------~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      +.||+|+||.||+|.....+          ..|++|.+...... ...|.+|+..  .++|+||+++++++.. ...++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            46899999999999987444          35888887665433 5778888776  4899999999999988 778999


Q ss_pred             EecCCCCCHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-------cEEEEeeCC
Q 038969          607 YEFMAKGNLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-------IVKLITFSI  674 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~-~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-------~vkI~DFGl  674 (678)
                      |||+++|+|.+++.... .+++..++.++.|++.||+ |||+   .+|+||||||+|    .++       .+||+|||+
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALH-YLED---KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhh---CCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            99999999999998654 7999999999999999999 9999   899999999999    444       699999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      ++.
T Consensus       155 a~~  157 (259)
T cd05037         155 PIT  157 (259)
T ss_pred             ccc
Confidence            874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.80  E-value=3.6e-19  Score=187.68  Aligned_cols=134  Identities=19%  Similarity=0.257  Sum_probs=116.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+++.||||++..... .....+.+|+..  .++|+||+++++++......++||||++ |+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~   88 (303)
T cd07869          10 LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TD   88 (303)
T ss_pred             eeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cC
Confidence            4789999999999999987889999999975432 223456677776  4899999999999999999999999996 68


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..+..++.|+++||+ |||+   .+|+||||||+|    +.+.+||+|||+|+
T Consensus        89 l~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  151 (303)
T cd07869          89 LCQYMDKHPGGLHPENVKLFLFQLLRGLS-YIHQ---RYILHRDLKPQNLLISDTGELKLADFGLAR  151 (303)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEECCCCcce
Confidence            88888654 56899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.80  E-value=4.1e-19  Score=182.76  Aligned_cols=135  Identities=27%  Similarity=0.444  Sum_probs=120.2

Q ss_pred             hhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.+.||+|++|.||+|... +++.||+|.++... ...++|.+|+..  .++|+||+++++++...+..++||||+++|
T Consensus         9 ~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (261)
T cd05068           9 QLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYG   86 (261)
T ss_pred             eeEEEecccCCccEEEEEec-CCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCC
Confidence            34588999999999999976 67889999997654 235678888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.++.+++.|++.||. |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          87 SLLEYLQGGAGRALKLPQLIDMAAQVASGMA-YLEA---QNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             cHHHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            999999764  47899999999999999999 9999   899999999999    78889999999886

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.80  E-value=4.7e-19  Score=184.61  Aligned_cols=135  Identities=25%  Similarity=0.418  Sum_probs=118.6

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||++..    ..++..||+|.+........+.|.+|++.  .++|+||+++++++..  ....++||||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~   88 (284)
T cd05081           9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEY   88 (284)
T ss_pred             eeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEe
Confidence            47899999999999974    23578999999987766667788899887  4899999999998754  3468999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        89 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~-~LH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          89 LPYGSLRDYLQKHRERLDHRKLLLYASQICKGME-YLGS---KRYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             cCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCCHhhEEECCCCeEEECCCcccc
Confidence            9999999999754 56899999999999999999 9999   899999999999    77889999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.80  E-value=3.7e-19  Score=183.82  Aligned_cols=134  Identities=19%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      ..||+|+||.||+|....++..||+|.+........+.+.+|+..  .++|+||+++++++..++..++|+||+++++|.
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   93 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLS   93 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHH
Confidence            589999999999999877788999999987766667788888877  489999999999999999999999999999999


Q ss_pred             HhhcCC-CCC--CHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          617 EHLSGA-NTL--TWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~-~~l--~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +++... ..+  ++..++.++.|+++||+ |||+   .+|+||||||+|     ..+.+||+|||+++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~  157 (268)
T cd06624          94 ALLRSKWGPLKDNEQTIIFYTKQILEGLK-YLHD---NQIVHRDIKGDNVLVNTYSGVVKISDFGTSK  157 (268)
T ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHHHHH-HHHH---CCEeecCCCHHHEEEcCCCCeEEEecchhhe
Confidence            999754 445  88999999999999999 9999   899999999999     36789999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.80  E-value=3.4e-19  Score=190.56  Aligned_cols=134  Identities=16%  Similarity=0.310  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+|+.||||++...  ......++.+|+..  .++||||+++++++...     ...++|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e   84 (338)
T cd07859           5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFE   84 (338)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEe
Confidence            46899999999999998878999999998753  22334567888877  48999999999988543     34799999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||. ++|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        85 ~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          85 LME-SDLHQVIKANDDLTPEHHQFFLYQLLRALK-YIHT---ANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             cCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence            995 699999987778999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.80  E-value=4.6e-19  Score=182.66  Aligned_cols=136  Identities=24%  Similarity=0.412  Sum_probs=121.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|++|.||+|.....++.||+|.+.... ...+++.+|+..  .++|+||+++++++...+..++||||+++|+
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (263)
T cd05052          10 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGN   88 (263)
T ss_pred             EeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCc
Confidence            3578999999999999988778999999987543 345678888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..+++..++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++.
T Consensus        89 L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~-~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~~  153 (263)
T cd05052          89 LLDYLRECNRQEVNAVVLLYMATQISSAME-YLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRL  153 (263)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeecccCcceEEEcCCCcEEeCCCccccc
Confidence            99999753  46899999999999999999 9999   899999999999    888999999998863

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.80  E-value=3.4e-19  Score=186.01  Aligned_cols=136  Identities=19%  Similarity=0.244  Sum_probs=118.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+++.+.+++.||||++....  ....+.+.+|+..  .++|+||+++++++...+..++||||++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKN   85 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCC
Confidence            468999999999999998788999999997542  2234567778777  489999999999999999999999999988


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+..+......+++..++.++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~  149 (287)
T cd07848          86 MLELLEEMPNGVPPEKVRSYIYQLIKAIH-WCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARN  149 (287)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCccc
Confidence            77766554467999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.79  E-value=5e-19  Score=189.16  Aligned_cols=136  Identities=19%  Similarity=0.243  Sum_probs=117.1

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+++..   .+++.||+|++....    ....+.+..|+.++  + +|+||+++++++...+..++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLIL   84 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEE
Confidence            478999999999998763   257899999996532    12234566676663  5 6999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        85 e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~  154 (332)
T cd05614          85 DYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALE-HLHK---LGIVYRDIKLENILLDSEGHVVLTDFGLSKE  154 (332)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcEecCCCHHHeEECCCCCEEEeeCcCCcc
Confidence            99999999999987778999999999999999999 9999   899999999999    778999999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.79  E-value=6.6e-19  Score=183.28  Aligned_cols=132  Identities=20%  Similarity=0.280  Sum_probs=113.9

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||+++.+.+|+.+|+|.+.....   ...+.+..|+++  .++||||+++++++..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            6999999999999887899999999865321   122334445555  58999999999999999999999999999999


Q ss_pred             HHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++...  ..+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~  143 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGIL-HLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAV  143 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHH-HHHH---CCEEEccCChHhEEEcCCCCEEEeeceeee
Confidence            9988643  46899999999999999999 9999   899999999999    78889999999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.79  E-value=7.6e-19  Score=181.24  Aligned_cols=136  Identities=19%  Similarity=0.264  Sum_probs=122.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+++...+++.||+|.++.........+.+|+..  .++|+||+++++++..++..++||||+++|+
T Consensus        13 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~   92 (267)
T cd06645          13 LIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGS   92 (267)
T ss_pred             HHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCc
Confidence            34789999999999999877889999999977654455567777766  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++.+++.++.|++.||+ |||+   .+++|+||||+|    .++.+||+|||+++
T Consensus        93 L~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          93 LQDIYHVTGPLSESQIAYVSRETLQGLY-YLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEECcceeee
Confidence            9999987778999999999999999999 9999   899999999999    77889999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.79  E-value=2.2e-19  Score=192.54  Aligned_cols=135  Identities=23%  Similarity=0.401  Sum_probs=119.6

Q ss_pred             hhhhcccCCceEEEEEEEccC--C--EEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN--G--TQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~--g--~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      ..++||.|.||.||+|.....  |  ..||||..+.. .....+.|..|..++  ++|||||+|+|.|.+ .++|||||.
T Consensus       393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~WivmEL  471 (974)
T KOG4257|consen  393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIVMEL  471 (974)
T ss_pred             HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeEEEec
Confidence            357999999999999998421  2  36999999874 455678899998884  999999999999985 679999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++-|.|.+||..+ ..|+......++.|++.+|+ |||+   .++|||||.++|    ...-|||+||||+|
T Consensus       472 ~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~tala-YLeS---krfVHRDIAaRNiLVsSp~CVKLaDFGLSR  539 (974)
T KOG4257|consen  472 APLGELREYLQQNKDSLPLRTLTLYCYQICTALA-YLES---KRFVHRDIAARNILVSSPQCVKLADFGLSR  539 (974)
T ss_pred             ccchhHHHHHHhccccchHHHHHHHHHHHHHHHH-HHHh---hchhhhhhhhhheeecCcceeeecccchhh
Confidence            9999999999865 67999999999999999999 9999   899999999999    77789999999998

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.79  E-value=5.8e-19  Score=193.09  Aligned_cols=128  Identities=15%  Similarity=0.099  Sum_probs=114.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||++.....++.||+|....      ..+.+|+.+  .++||||+++++++......++|+|++. ++|
T Consensus        97 ~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L  169 (391)
T PHA03212         97 LETFTPGAEGFAFACIDNKTCEHVVIKAGQR------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDL  169 (391)
T ss_pred             EEEEcCCCCeEEEEEEECCCCCEEEEechhh------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCH
Confidence            3789999999999999987899999997542      345677776  4999999999999999999999999995 699


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.....+++.+++.++.|+++||+ |||+   .+||||||||+|    ..+.+||+|||+|+
T Consensus       170 ~~~l~~~~~l~~~~~~~i~~qi~~aL~-ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~  230 (391)
T PHA03212        170 YCYLAAKRNIAICDILAIERSVLRAIQ-YLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAAC  230 (391)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccc
Confidence            999987778999999999999999999 9999   899999999999    77899999999986

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.79  E-value=8e-19  Score=192.34  Aligned_cols=135  Identities=21%  Similarity=0.387  Sum_probs=115.8

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCch-hhHHHHHHHHHHh--cC-CCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSV-QGYKQFQAEVQYI--VH-HKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|++.     ..++.||||+++.... ...+.+..|+.++  +. |+||++++++|...+..++|||
T Consensus        42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E  121 (401)
T cd05107          42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITE  121 (401)
T ss_pred             hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEe
Confidence            478999999999999863     2346899999976532 3345688888873  65 9999999999999999999999


Q ss_pred             cCCCCCHHHhhcCC------------------------------------------------------------------
Q 038969          609 FMAKGNLEEHLSGA------------------------------------------------------------------  622 (678)
Q Consensus       609 y~~~GsL~~~L~~~------------------------------------------------------------------  622 (678)
                      |+++|+|.++++..                                                                  
T Consensus       122 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (401)
T cd05107         122 YCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKY  201 (401)
T ss_pred             ccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhh
Confidence            99999999998532                                                                  


Q ss_pred             --------------------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          623 --------------------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       623 --------------------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                                                      ..+++.++++++.|+++||+ |||+   .+|+||||||+|    +...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrdlkp~NiLl~~~~~  277 (401)
T cd05107         202 ADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGME-FLAS---KNCVHRDLAARNVLICEGKL  277 (401)
T ss_pred             hhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHH-HHhc---CCcCcccCCcceEEEeCCCE
Confidence                                            24788899999999999999 9999   899999999999    7788


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+++
T Consensus       278 ~kL~DfGla~  287 (401)
T cd05107         278 VKICDFGLAR  287 (401)
T ss_pred             EEEEecCcce
Confidence            9999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.79  E-value=5.6e-19  Score=184.06  Aligned_cols=137  Identities=24%  Similarity=0.424  Sum_probs=117.9

Q ss_pred             hhhhcccCCceEEEEEEEc----cCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLE----FNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~----~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+|...    ..+..||+|.+... ..+...+|.+|+..  .++|+||+++++++..+...++||||
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   88 (283)
T cd05090           9 FMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEY   88 (283)
T ss_pred             eeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEc
Confidence            4578999999999999852    24578999999754 33445678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          610 MAKGNLEEHLSGA-----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       610 ~~~GsL~~~L~~~-----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                      +++|+|.+++...                 ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    ++..+|
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~-~lH~---~~i~H~dlkp~nili~~~~~~k  164 (283)
T cd05090          89 LNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGME-YLSS---HFFVHKDLAARNILIGEQLHVK  164 (283)
T ss_pred             CCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHH-HHHh---cCeehhccccceEEEcCCCcEE
Confidence            9999999998521                 35889999999999999999 9999   899999999999    778899


Q ss_pred             EEeeCCccc
Q 038969          669 LITFSIIKN  677 (678)
Q Consensus       669 I~DFGlar~  677 (678)
                      |+|||+++.
T Consensus       165 l~dfg~~~~  173 (283)
T cd05090         165 ISDLGLSRE  173 (283)
T ss_pred             ecccccccc
Confidence            999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.79  E-value=1e-18  Score=180.22  Aligned_cols=136  Identities=25%  Similarity=0.380  Sum_probs=119.3

Q ss_pred             hhhhcccCCceEEEEEEEccC---CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|.....   ...||||.++... .....+|.+|+..  .++|+||+++++++...+..++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   87 (266)
T cd05033           8 IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYM   87 (266)
T ss_pred             eeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcC
Confidence            357899999999999988533   3579999987643 3345678888877  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.++++++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~Lh~---~~i~H~di~p~nili~~~~~~~l~dfg~~~  154 (266)
T cd05033          88 ENGSLDKFLRENDGKFTVGQLVGMLRGIASGMK-YLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (266)
T ss_pred             CCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCcceEEEcCCCCEEECccchhh
Confidence            999999999764 57899999999999999999 9999   899999999999    77889999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.79  E-value=7.4e-19  Score=181.76  Aligned_cols=133  Identities=30%  Similarity=0.339  Sum_probs=114.5

Q ss_pred             hcccCCceEEEEEEEcc--CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLEF--NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|....  .+..+|+|.++... ......|.+|+..  .++|+||+++++++.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999998642  34579999987653 2344578888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...     ..+++..+++++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~  148 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLL-HLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSH  148 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HHHH---CCEeccccCcceEEEcCCCcEEECCccccc
Confidence            99999642     35678889999999999999 9999   899999999999    77889999999886

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.79  E-value=4.3e-19  Score=186.95  Aligned_cols=135  Identities=23%  Similarity=0.319  Sum_probs=118.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +++||+|.||+||-|+.++.|+.||||++.+..  ..+..+.++|+.++  ++||.||.|.-.|+..+..++|||-+. |
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~-G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH-G  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc-c
Confidence            489999999999999999999999999997753  23446789999985  999999999999999999999999995 5


Q ss_pred             CHHHhh-cC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          614 NLEEHL-SG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L-~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      ++.+.+ .. +..|++.....+..||+.||. |||.   .+|+|.||||+|       ....+||||||+||-
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr-~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfARi  716 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALR-YLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFARI  716 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHH-Hhhh---cceeeccCCchheeeccCCCCCceeeccccceee
Confidence            655555 33 378999999999999999999 9999   999999999999       566899999999983

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.79  E-value=1.3e-18  Score=177.53  Aligned_cols=133  Identities=23%  Similarity=0.433  Sum_probs=118.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ++||+|+||.||+|... +++.+|+|.+..... .....|.+|+..  .++|+||+++++++...+..++||||+++|+|
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            46899999999999976 788999999876543 334468888877  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.+++.++.|+++||. |+|+   .+++||||||+|    +++.+||+|||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~  141 (250)
T cd05085          80 LSFLRKKKDELKTKQLVKFALDAAAGMA-YLES---KNCIHRDLAARNCLVGENNVLKISDFGMSR  141 (250)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecccChheEEEcCCCeEEECCCccce
Confidence            9999754 56899999999999999999 9999   899999999999    78889999999885

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.79  E-value=9.2e-19  Score=179.85  Aligned_cols=135  Identities=26%  Similarity=0.455  Sum_probs=122.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... +++.+|+|.+.........++..|+..  .++|+||+++++++......++||||+++|+
T Consensus        10 ~~~~ig~g~~~~vy~~~~~-~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (261)
T cd05148          10 LERKLGSGYFGEVWEGLWK-NRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGS   88 (261)
T ss_pred             HhhhhccCCCccEEEeEec-CCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCC
Confidence            3478999999999999998 588999999987765556778888877  3899999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.++++++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~~~~i~~al~-~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~~  152 (261)
T cd05148          89 LLAFLRSPEGQVLPVASLIDMACQVAEGMA-YLEE---QNSIHRDLAARNILVGEDLVCKVADFGLAR  152 (261)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccCcceEEEcCCceEEEccccchh
Confidence            99999753  56899999999999999999 9999   889999999999    78899999999885

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.79  E-value=1.9e-18  Score=179.98  Aligned_cols=134  Identities=19%  Similarity=0.302  Sum_probs=121.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|+||.||+|....++..+|+|.+........+.|.+|+..  .++|+|++++++++..++..++|+||+++|+|.
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~   90 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVD   90 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHH
Confidence            679999999999999987788999999977665666778888877  489999999999999999999999999999999


Q ss_pred             HhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ...+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        91 ~~~~~~~~~l~~~~~~~~~~qi~~~L~-~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~  151 (282)
T cd06643          91 AVMLELERPLTEPQIRVVCKQTLEALN-YLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSA  151 (282)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCcccEEEccCCCEEEccccccc
Confidence            98864 367999999999999999999 9999   899999999999    78889999999885

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.79  E-value=6.4e-19  Score=191.56  Aligned_cols=134  Identities=16%  Similarity=0.288  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC-----eeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT-----NMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~-----~~~LV~E  608 (678)
                      .+.||+|+||.||++....+|+.||||.+...  .....+++.+|+.+  .++|+||+++++++....     ..++|+|
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e   84 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTE   84 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEee
Confidence            47899999999999998778999999998653  23345677888877  489999999999998766     7899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+. ++|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        85 ~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          85 LMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLK-YLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             ccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCChHHEEECCCCCEEecccccee
Confidence            997 589998877778999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.79  E-value=9.2e-19  Score=179.89  Aligned_cols=134  Identities=22%  Similarity=0.399  Sum_probs=118.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... ++..+|+|.+..... ...+|.+|+..  .++||||+++++++......++||||+++|+
T Consensus         8 ~~~~lg~G~~~~vy~~~~~-~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGC   85 (256)
T ss_pred             EeeEecCcccceEEEEEec-CCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCc
Confidence            3468999999999999875 556799999875432 34678888877  4899999999999998889999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.++++++.|++.||+ |||+   .+++|+||||+|    +++.+||+|||+++
T Consensus        86 l~~~i~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~  148 (256)
T cd05113          86 LLNYLREHGKRFQPSQLLEMCKDVCEGMA-YLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSR  148 (256)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccCcceEEEcCCCCEEECCCccce
Confidence            99999753 47899999999999999999 9999   899999999999    77889999999876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.79  E-value=8.3e-19  Score=185.05  Aligned_cols=136  Identities=26%  Similarity=0.485  Sum_probs=117.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCE--EEEEEEeccC-chhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGT--QVAVKMLSAS-SVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~--~VAVK~l~~~-~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|....++.  .+|+|.++.. .....++|.+|+..  .+ +|+||+++++++...+..++||||+
T Consensus        11 ~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (303)
T cd05088          11 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   90 (303)
T ss_pred             eeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeC
Confidence            45789999999999999865665  4688877653 33445678888877  35 8999999999999999999999999


Q ss_pred             CCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          611 AKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       611 ~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      ++|+|.++++..                ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~-~LH~---~gi~H~dlkp~Nili~~~~~~kl~  166 (303)
T cd05088          91 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMD-YLSQ---KQFIHRDLAARNILVGENYVAKIA  166 (303)
T ss_pred             CCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHH-HHHh---CCccccccchheEEecCCCcEEeC
Confidence            999999999643                25789999999999999999 9999   899999999999    78899999


Q ss_pred             eeCCcc
Q 038969          671 TFSIIK  676 (678)
Q Consensus       671 DFGlar  676 (678)
                      |||+++
T Consensus       167 dfg~~~  172 (303)
T cd05088         167 DFGLSR  172 (303)
T ss_pred             ccccCc
Confidence            999986

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.78  E-value=1e-18  Score=180.59  Aligned_cols=136  Identities=24%  Similarity=0.391  Sum_probs=120.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCE---EEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGT---QVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~---~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|....+++   .||||+++.. .....++|..|+..  .++||||+++++++..+...++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~   87 (269)
T cd05065           8 IEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFM   87 (269)
T ss_pred             EEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecC
Confidence            45789999999999999865553   6999999765 34456788899887  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|++.||+ |||+   .+++||||||+|    .+..+||+|||+++
T Consensus        88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~-~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg~~~  154 (269)
T cd05065          88 ENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMK-YLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (269)
T ss_pred             CCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccChheEEEcCCCcEEECCCcccc
Confidence            999999999754 56899999999999999999 9999   899999999999    77899999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.78  E-value=1.2e-18  Score=178.53  Aligned_cols=134  Identities=28%  Similarity=0.450  Sum_probs=120.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|++|.||+|..  .|+.||+|.+..... ..+++.+|+..  .++|+||+++++++......++||||+++|+
T Consensus        10 ~~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   86 (256)
T cd05039          10 LGATIGKGEFGDVMLGDY--RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGS   86 (256)
T ss_pred             ceeeeecCCCceEEEEEe--cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCc
Confidence            357899999999999987  578999999987654 56778888877  4899999999999998999999999999999


Q ss_pred             HHHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++....  .+++.+++.++.|++.||. |||+   .+++||||||+|    .++.+||+|||+++.
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          87 LVDYLRSRGRAVITLAQQLGFALDVCEGME-YLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccchhcccceEEEeCCCCEEEcccccccc
Confidence            999997653  7999999999999999999 9999   899999999999    788999999999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.78  E-value=1.5e-18  Score=183.56  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=121.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++....++..+|+|.+... ......++.+|++.  .++|+||+++++++..++..++||||+++|+
T Consensus         6 ~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~   85 (308)
T cd06615           6 LGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   85 (308)
T ss_pred             EeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCc
Confidence            46899999999999998878899999998754 23334568888877  3899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.++++....+++..+..++.|+++||. |||+.  .+++||||||+|    +++.+||+|||+++.
T Consensus        86 L~~~l~~~~~~~~~~~~~~~~~i~~~l~-~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          86 LDQVLKKAGRIPENILGKISIAVLRGLT-YLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHhh--CCEEECCCChHHEEEecCCcEEEccCCCccc
Confidence            9999987778999999999999999999 99972  479999999999    778899999998763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.78  E-value=1.3e-18  Score=202.72  Aligned_cols=135  Identities=17%  Similarity=0.223  Sum_probs=118.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|.....|+.||+|++....   ....++|.+|+++  .++||||+++++++.+.+..++||||+++
T Consensus         7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eG   86 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEG   86 (932)
T ss_pred             EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCC
Confidence            368999999999999988789999999997542   2234578888887  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC-----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++...           ..+++..+++++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        87 GSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~-yLHs---~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         87 YTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIE-YVHS---KGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             CCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHH-HHHH---CCccccCCchheEEEcCCCCEEEEecCcce
Confidence            9999998531           34678889999999999999 9999   899999999999    77899999999986

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.78  E-value=1.2e-18  Score=179.94  Aligned_cols=136  Identities=24%  Similarity=0.381  Sum_probs=118.4

Q ss_pred             hhhhcccCCceEEEEEEEccCC---EEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g---~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|.....+   ..+|+|.++... ....+.|..|+..  .++||||+++++++...+..++||||+
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (267)
T cd05066           8 IEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYM   87 (267)
T ss_pred             eeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcC
Confidence            3478999999999999875333   479999987543 3345678888877  389999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.++++++.|++.||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~h~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd05066          88 ENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMK-YLSD---MGYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (267)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeehhhchhcEEECCCCeEEeCCCCccc
Confidence            999999999764 56899999999999999999 9999   899999999999    77889999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.78  E-value=1.1e-18  Score=203.32  Aligned_cols=135  Identities=22%  Similarity=0.272  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||||+++...   ......+..|+..  +++|+||+++++++......+|||||+++
T Consensus         9 ~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g   88 (669)
T cd05610           9 VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIG   88 (669)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCC
Confidence            478999999999999998788999999997542   2234567777776  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+++|+.||++||+ |||.   .+||||||||+|    .++.+||+|||+++
T Consensus        89 ~~L~~li~~~~~l~~~~~~~i~~qil~aL~-yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          89 GDVKSLLHIYGYFDEEMAVKYISEVALALD-YLHR---HGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            999999987677899999999999999999 9999   799999999999    77899999999997

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.78  E-value=1.3e-18  Score=178.68  Aligned_cols=134  Identities=25%  Similarity=0.407  Sum_probs=118.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||++..+ .+..+|+|.+..... ...+|.+|+..  .++|+||+++++++...+..++||||+++++
T Consensus         8 ~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGC   85 (256)
T ss_pred             hhhhhccCCCceEEEeEec-CCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCC
Confidence            4578999999999999886 667899999865432 33567778776  4899999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        86 L~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~  148 (256)
T cd05059          86 LLNYLRERKGKLGTEWLLDMCSDVCEAME-YLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLAR  148 (256)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccccHhhEEECCCCcEEECCcccce
Confidence            99999753 57899999999999999999 9999   889999999999    78889999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.78  E-value=1.5e-18  Score=179.44  Aligned_cols=137  Identities=23%  Similarity=0.378  Sum_probs=114.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCE--EEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeE
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGT--QVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMG  604 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~--~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~  604 (678)
                      +.+.||+|+||.||+|.....+.  .||+|.++..  .....+.|..|+..  .++|+||++++++|...      ...+
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   82 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPV   82 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcE
Confidence            35789999999999999864554  6999998754  33445678888776  48999999999988532      2468


Q ss_pred             EEEecCCCCCHHHhhcC------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          605 LIYEFMAKGNLEEHLSG------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~------~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      ++||||++|+|.+++..      ...+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+
T Consensus        83 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  158 (272)
T cd05075          83 VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGME-YLSS---KSFIHRDLAARNCMLNENMNVCVADFGL  158 (272)
T ss_pred             EEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccchhheEEcCCCCEEECCCCc
Confidence            99999999999998742      145899999999999999999 9999   899999999999    788999999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      ++.
T Consensus       159 ~~~  161 (272)
T cd05075         159 SKK  161 (272)
T ss_pred             ccc
Confidence            873

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.78  E-value=1.3e-18  Score=181.98  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=117.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||++....+++.||+|.+.....   .....+..|+.+  .++|+|++++.+++..++..++||||+++|
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   85 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGG   85 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCc
Confidence            679999999999999987899999999975422   223456677776  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~-~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~  150 (285)
T cd05632          86 DLKFHIYNMGNPGFEEERALFYAAEILCGLE-DLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence            999988643  46999999999999999999 9999   899999999999    67889999999885

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.78  E-value=7.3e-19  Score=190.14  Aligned_cols=135  Identities=19%  Similarity=0.289  Sum_probs=122.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ...||+|.|+.|..++....+.+||||.++++.  ....+.+.+|++++  +.|||||+++.+......+|+||||+.+|
T Consensus        61 ~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~g  140 (596)
T KOG0586|consen   61 IKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGG  140 (596)
T ss_pred             eeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCc
Confidence            368999999999999998899999999998763  23345588898884  89999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++||.............+..|+.++++ |+|+   ..|||||||+.|    .+.++||+|||++.
T Consensus       141 e~~~yl~~~gr~~e~~ar~~F~q~vsave-YcH~---k~ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586|consen  141 ELFDYLVKHGRMKEKEARAKFRQIVSAVE-YCHS---KNIVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             hhHHHHHhcccchhhhhhhhhHHHHHHHH-HHhh---cceeccccchhhcccccccceeeeccccce
Confidence            99999998888888999999999999999 9999   899999999999    77789999999874

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.78  E-value=1.6e-18  Score=178.05  Aligned_cols=132  Identities=19%  Similarity=0.342  Sum_probs=114.8

Q ss_pred             hcccCCceEEEEEEE--ccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          540 VIGKGGFGTVYHGYL--EFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~--~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .||+|+||.||+|.+  ..+++.+|+|+++...  ....++|.+|+.+  .++|+||+++++++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999965  3357899999987543  2345678888776  489999999999985 45678999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++..+++++.|++.||+ |||+   .+|+||||||+|    ++..+||+|||+++
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~  143 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMK-YLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSK  143 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccchhhEEEcCCCeEEECCCcccc
Confidence            99999987778999999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.78  E-value=1.4e-18  Score=179.29  Aligned_cols=134  Identities=21%  Similarity=0.333  Sum_probs=113.4

Q ss_pred             hhcccCCceEEEEEEEcc------------CCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeE
Q 038969          539 KVIGKGGFGTVYHGYLEF------------NGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMG  604 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~------------~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~  604 (678)
                      +.||+|+||.||+|....            ....||+|.+..........|..|+..  .++||||+++++++......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999998531            123689999876554455677777766  489999999999999999999


Q ss_pred             EEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-------cEEEEee
Q 038969          605 LIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-------IVKLITF  672 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-------~vkI~DF  672 (678)
                      +||||+++|+|..++... ..+++.++++++.|+++||+ |||+   .+|+||||||+|    .++       .+|++||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~  156 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALS-YLED---KDLVHGNVCTKNILLAREGIDGECGPFIKLSDP  156 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-Hhhh---CCeECCCCCcccEEEecCCccCCCCceeEeCCC
Confidence            999999999999998754 56999999999999999999 9999   899999999999    333       2899999


Q ss_pred             CCcc
Q 038969          673 SIIK  676 (678)
Q Consensus       673 Glar  676 (678)
                      |+++
T Consensus       157 g~~~  160 (262)
T cd05077         157 GIPI  160 (262)
T ss_pred             CCCc
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.78  E-value=1.7e-18  Score=181.02  Aligned_cols=136  Identities=25%  Similarity=0.436  Sum_probs=119.4

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||++...     .++..+|+|.+........+.+..|++.  .++|+||+++++++...+..++||||
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY   88 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEc
Confidence            3578999999999999752     2346799999987665566788888887  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEee
Q 038969          610 MAKGNLEEHLSGA-------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITF  672 (678)
Q Consensus       610 ~~~GsL~~~L~~~-------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DF  672 (678)
                      +++|+|.+++...             ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+||
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~-~lH~---~~i~H~dlkp~Nili~~~~~~kl~df  164 (288)
T cd05093          89 MKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMV-YLAS---QHFVHRDLATRNCLVGENLLVKIGDF  164 (288)
T ss_pred             CCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecccCcceEEEccCCcEEeccC
Confidence            9999999999642             24899999999999999999 9999   899999999999    8889999999


Q ss_pred             CCcc
Q 038969          673 SIIK  676 (678)
Q Consensus       673 Glar  676 (678)
                      |+++
T Consensus       165 g~~~  168 (288)
T cd05093         165 GMSR  168 (288)
T ss_pred             Cccc
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.78  E-value=1.8e-18  Score=178.57  Aligned_cols=136  Identities=24%  Similarity=0.395  Sum_probs=115.9

Q ss_pred             hhhcccCCceEEEEEEEccCC---EEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe------eE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN------MG  604 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g---~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~------~~  604 (678)
                      .+.||+|+||.||+|....++   ..||+|+++...  .....++.+|+..  .++|+||+++++++.....      .+
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   83 (273)
T cd05035           4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPM   83 (273)
T ss_pred             ccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccE
Confidence            478999999999999886433   689999997542  3345678888877  3899999999999866554      79


Q ss_pred             EEEecCCCCCHHHhhcCC------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          605 LIYEFMAKGNLEEHLSGA------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      +++||+++|+|.+++...      ..+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+
T Consensus        84 ~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~  159 (273)
T cd05035          84 VILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGME-YLSN---RNFIHRDLAARNCMLREDMTVCVADFGL  159 (273)
T ss_pred             EEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccchheEEECCCCeEEECCccc
Confidence            999999999999998432      46899999999999999999 9999   899999999999    778999999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      |+.
T Consensus       160 ~~~  162 (273)
T cd05035         160 SKK  162 (273)
T ss_pred             eee
Confidence            873

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.78  E-value=2e-18  Score=177.54  Aligned_cols=132  Identities=19%  Similarity=0.381  Sum_probs=113.7

Q ss_pred             hcccCCceEEEEEEEc--cCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLE--FNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|...  ..+..||+|++..... ...++|.+|+..  .++|+||+++++++. ....++||||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            3899999999999764  2456799999976533 334668888877  489999999999885 457899999999999


Q ss_pred             HHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.. ...+++.++++++.|+++||+ |||+   .+++||||||+|    .+..+||+|||+++
T Consensus        81 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~  143 (257)
T cd05115          81 LNKFLSGKKDEITVSNVVELMHQVSMGMK-YLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSK  143 (257)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---cCeeecccchheEEEcCCCcEEeccCCccc
Confidence            9999975 367999999999999999999 9999   899999999999    77889999999886

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.78  E-value=1.8e-18  Score=179.07  Aligned_cols=134  Identities=25%  Similarity=0.471  Sum_probs=116.2

Q ss_pred             hhcccCCceEEEEEEEccCCE--EEEEEEeccC-chhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGT--QVAVKMLSAS-SVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~--~VAVK~l~~~-~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|....++.  .+|+|.++.. .....+.+..|++.  .+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            368999999999999875664  5788988753 33445678888877  35 899999999999999999999999999


Q ss_pred             CCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEee
Q 038969          613 GNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITF  672 (678)
Q Consensus       613 GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DF  672 (678)
                      |+|.+++...                ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~-~lH~---~~i~H~dikp~nili~~~~~~kl~df  156 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMD-YLSQ---KQFIHRDLAARNILVGENYVAKIADF  156 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccccceEEEcCCCeEEECCC
Confidence            9999999643                24789999999999999999 9999   899999999999    7889999999


Q ss_pred             CCcc
Q 038969          673 SIIK  676 (678)
Q Consensus       673 Glar  676 (678)
                      |+++
T Consensus       157 gl~~  160 (270)
T cd05047         157 GLSR  160 (270)
T ss_pred             CCcc
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.78  E-value=2.1e-18  Score=179.56  Aligned_cols=136  Identities=27%  Similarity=0.492  Sum_probs=118.1

Q ss_pred             hhhhcccCCceEEEEEEEccCC-----EEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG-----TQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g-----~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|.....+     ..||+|.+.... .....+|.+|+..  .++|+||+++++++...+..+++||
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e   88 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFE   88 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEe
Confidence            3478999999999999875333     679999997543 3345678888887  4899999999999999899999999


Q ss_pred             cCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          609 FMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       609 y~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                      |+++|+|.+++...                ..+++.+++.++.|+++||+ |||+   .+++||||||+|    +++.+|
T Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~-~lH~---~~i~H~dlkp~Nil~~~~~~~~  164 (283)
T cd05048          89 YLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGME-YLSS---HHFVHRDLAARNCLVGEGLTVK  164 (283)
T ss_pred             cCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccccceEEEcCCCcEE
Confidence            99999999999643                45889999999999999999 9999   899999999999    778899


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+++
T Consensus       165 L~dfg~~~  172 (283)
T cd05048         165 ISDFGLSR  172 (283)
T ss_pred             ECCCccee
Confidence            99999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.78  E-value=2.2e-18  Score=176.24  Aligned_cols=134  Identities=29%  Similarity=0.487  Sum_probs=120.5

Q ss_pred             hhcccCCceEEEEEEEccC---CEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|.....   +..||+|.++..... ..+++.+|+..  .++|+|++++++++......++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            4689999999999998744   789999999876433 36778888877  48899999999999999999999999999


Q ss_pred             CCHHHhhcCC---------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA---------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~---------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++...         ..+++.++.+++.|+++||+ |||+   .+++||||||+|    +++.+||+|||.++
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~lH~---~~i~H~di~p~nili~~~~~~~l~dfg~~~  153 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME-YLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSR  153 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHH-HHHc---CCcccCccCcceEEECCCCcEEEccccccc
Confidence            9999999874         67999999999999999999 9999   899999999999    77999999999986

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.78  E-value=1.9e-18  Score=179.68  Aligned_cols=134  Identities=24%  Similarity=0.391  Sum_probs=115.4

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+|+    .||+|+++... ....+++.+|+..  .++|+||++++++|.. ...++++||+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l~~~~~   90 (279)
T cd05109          12 VKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQLVTQLM   90 (279)
T ss_pred             eeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEEEEEcC
Confidence            4789999999999998754555    48999987643 3345677888776  4899999999999975 4578999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        91 ~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          91 PYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMS-YLEE---VRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             CCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccccceEEEcCCCcEEECCCCcee
Confidence            999999999764 56999999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.78  E-value=1.8e-18  Score=180.06  Aligned_cols=137  Identities=23%  Similarity=0.382  Sum_probs=117.2

Q ss_pred             hhhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|....     .++.||+|+++..... ....|.+|+.+  .++|+||+++++++...+..++++|
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e   88 (283)
T cd05091           9 FMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFS   88 (283)
T ss_pred             HHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEE
Confidence            45789999999999998742     3478999999865432 34567788776  4899999999999999999999999


Q ss_pred             cCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          609 FMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       609 y~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                      |+++++|.+++...                ..+++..+++++.|+++||+ |||+   .+|+||||||+|    ++..+|
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~-~lH~---~gi~H~dlkp~Nil~~~~~~~k  164 (283)
T cd05091          89 YCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGME-FLSS---HHVVHKDLATRNVLVFDKLNVK  164 (283)
T ss_pred             cCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHH-HHHH---cCccccccchhheEecCCCceE
Confidence            99999999998521                35889999999999999999 9999   899999999999    778899


Q ss_pred             EEeeCCccc
Q 038969          669 LITFSIIKN  677 (678)
Q Consensus       669 I~DFGlar~  677 (678)
                      |+|||+++.
T Consensus       165 l~Dfg~~~~  173 (283)
T cd05091         165 ISDLGLFRE  173 (283)
T ss_pred             ecccccccc
Confidence            999999873

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.78  E-value=1.6e-18  Score=178.24  Aligned_cols=133  Identities=24%  Similarity=0.434  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||+|... +++.||+|.+..... ..+.+.+|+..  .++|+||+++++++...+..+++|||+++|+|
T Consensus        11 ~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   88 (261)
T cd05072          11 VKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSL   88 (261)
T ss_pred             eeecCCcCCceEEEEEec-CCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcH
Confidence            478999999999999976 778899999875432 35678888777  48999999999999999999999999999999


Q ss_pred             HHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++++..  ..+++.+++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  151 (261)
T cd05072          89 LDFLKSDEGGKVLLPKLIDFSAQIAEGMA-YIER---KNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccchhhEEecCCCcEEECCCccce
Confidence            9999753  56899999999999999999 9999   899999999999    78889999999986

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=2.4e-18  Score=178.98  Aligned_cols=135  Identities=19%  Similarity=0.251  Sum_probs=122.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||++....++..+|+|.+........+.|.+|+..  .++|+|++++++.+..+...++||||+++|+|
T Consensus        10 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (280)
T cd06611          10 IGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGAL   89 (280)
T ss_pred             HHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcH
Confidence            3679999999999999876789999999987766666788888877  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||++.
T Consensus        90 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~-~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~  151 (280)
T cd06611          90 DSIMLELERGLTEPQIRYVCRQMLEALN-FLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSA  151 (280)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCChhhEEECCCCCEEEccCccch
Confidence            9998753 57999999999999999999 9999   899999999999    78899999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.78  E-value=1.4e-18  Score=183.81  Aligned_cols=134  Identities=18%  Similarity=0.304  Sum_probs=116.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+.+.+++.||+|.++.... .....+.+|+..  .++|+||+++++++..++..++||||+++ +
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~   89 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-D   89 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-C
Confidence            3679999999999999887888999999875432 223456677777  48999999999999999999999999975 8


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~~qi~~aL~-~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  152 (309)
T cd07872          90 LKQYMDDCGNIMSMHNVKIFLYQILRGLA-YCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (309)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEECccccce
Confidence            98888654 55899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.78  E-value=1.4e-18  Score=186.74  Aligned_cols=136  Identities=26%  Similarity=0.425  Sum_probs=114.0

Q ss_pred             hhhhcccCCceEEEEEEE-----ccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEc-CCeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDE-DTNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~-~~~~~LV  606 (678)
                      +.+.||+|+||.||+|..     ...++.||||+++... ......+.+|+..+  + +|+||++++++|.. +...++|
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEE
Confidence            458899999999999974     2356789999997643 23345677888773  5 78999999998865 4568999


Q ss_pred             EecCCCCCHHHhhcCC----------------------------------------------------------------
Q 038969          607 YEFMAKGNLEEHLSGA----------------------------------------------------------------  622 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------------------------------------------------------  622 (678)
                      |||+++|+|.++++..                                                                
T Consensus        91 ~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (343)
T cd05103          91 VEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQED  170 (343)
T ss_pred             EeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhh
Confidence            9999999999998631                                                                


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          623 ---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       623 ---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                         ..+++.++++++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus       171 ~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~  227 (343)
T cd05103         171 LYKKVLTLEDLICYSFQVAKGME-FLAS---RKCIHRDLAARNILLSENNVVKICDFGLAR  227 (343)
T ss_pred             hhhccCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCccCeEEEcCCCcEEEEeccccc
Confidence               23788999999999999999 9999   899999999999    78899999999886

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.78  E-value=3.2e-19  Score=193.52  Aligned_cols=135  Identities=22%  Similarity=0.350  Sum_probs=119.6

Q ss_pred             hhhcccCCceEEEEEEEccC-C--EEEEEEEeccCch-hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-G--TQVAVKMLSASSV-QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-g--~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      -+.||+|.||.|++|.+... |  ..||||++..... +...+|.+|+..+  ++|+|+++|+|...+ ..+.||+|.++
T Consensus       115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELap  193 (1039)
T KOG0199|consen  115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELAP  193 (1039)
T ss_pred             HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhcc
Confidence            47899999999999998632 3  3799999987654 3677899999884  899999999999887 78899999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .|+|.+.|++.  ..+-......+|.|||.||. ||..   ++.|||||.++|    ....|||+||||.|.
T Consensus       194 lGSLldrLrka~~~~llv~~Lcdya~QiA~aM~-YLes---krlvHRDLAARNlllasprtVKI~DFGLmRa  261 (1039)
T KOG0199|consen  194 LGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQ-YLES---KRLVHRDLAARNLLLASPRTVKICDFGLMRA  261 (1039)
T ss_pred             cchHHHHHhhccccceeHHHHHHHHHHHHHHHH-HHhh---hhhhhhhhhhhhheecccceeeeecccceec
Confidence            99999999873  56888899999999999999 9999   999999999999    788899999999884

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.78  E-value=1.6e-18  Score=178.84  Aligned_cols=135  Identities=23%  Similarity=0.357  Sum_probs=118.9

Q ss_pred             hhhcccCCceEEEEEEEccCCE---EEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT---QVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~---~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+...++.   .+|+|.++... ....+++..|+..  .++|+|++++++++...+..++||||++
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   89 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYME   89 (268)
T ss_pred             eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCC
Confidence            4789999999999999864443   79999987652 3345678888877  3889999999999999999999999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++... ..+++.+++.++.|++.||+ |||+   .+++||||||+|    ++..+||+|||+++
T Consensus        90 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~-~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  155 (268)
T cd05063          90 NGALDKYLRDHDGEFSSYQLVGMLRGIAAGMK-YLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSR  155 (268)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccchhhEEEcCCCcEEECCCccce
Confidence            99999999754 57899999999999999999 9999   889999999999    78889999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.78  E-value=2.3e-18  Score=179.47  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=114.1

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--h---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--I---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +||+|+||.||++....+++.+|+|.+.....   .....+..|...  +   .+|+|++++++++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            48999999999999877889999999865421   222333444332  2   479999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~-~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~  145 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLE-HMHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcce
Confidence            9999999987778999999999999999999 9999   889999999999    78899999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.78  E-value=2e-18  Score=179.32  Aligned_cols=135  Identities=21%  Similarity=0.365  Sum_probs=116.2

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|...     ..+..||||.+.... .....+|.+|+..  .++|+||+++++++.++...++||||
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~   90 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL   90 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEec
Confidence            478999999999999763     134689999986542 3345678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +++|+|.+++...          ..+++..++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||++
T Consensus        91 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~~vH~dlkp~Nil~~~~~~~~l~dfg~~  166 (277)
T cd05062          91 MTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMA-YLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMT  166 (277)
T ss_pred             CCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCcchheEEEcCCCCEEECCCCCc
Confidence            9999999998642          24688999999999999999 9999   899999999999    7889999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       167 ~  167 (277)
T cd05062         167 R  167 (277)
T ss_pred             c
Confidence            6

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.78  E-value=2.7e-18  Score=176.24  Aligned_cols=133  Identities=23%  Similarity=0.411  Sum_probs=116.3

Q ss_pred             hhcccCCceEEEEEEEccCC---EEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNG---TQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g---~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|+....+   ..+|+|.+..... ...+++.+|+..  .++|+||+++++++. .+..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            46899999999999875343   6899999986543 345678888877  489999999999876 4568999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..++.++.|+++||+ |||.   .+++||||||+|    .++.+||+|||+++
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~  143 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMA-YLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSR  143 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHhh---cCeeccCcccceEEEcCCCcEEeccccccc
Confidence            999999987778999999999999999999 9999   889999999999    78899999999986

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.78  E-value=2.5e-18  Score=175.85  Aligned_cols=135  Identities=17%  Similarity=0.205  Sum_probs=121.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||++....+++.||+|.+...  .....+++..|+..  .++|+|++++++++...+..++||||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08529           5 LNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENG   84 (256)
T ss_pred             eEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCC
Confidence            47899999999999999878999999998653  33455678888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.+++.++.|+++||. |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~-~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~  149 (256)
T cd08529          85 DLHKLLKMQRGRPLPEDQVWRFFIQILLGLA-HLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAK  149 (256)
T ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCcceEEEeCCCCEEEcccccce
Confidence            999999763  67899999999999999999 9999   899999999999    77899999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.77  E-value=3.8e-19  Score=164.49  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=117.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|.+|+||+|+....++.||+|++...+..  --....+|+-++  ++|+|||+++.....++.+-+|+|||.. +
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdq-d   86 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-D   86 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhH-H
Confidence            5799999999999999878889999998764322  134567787773  8999999999999999999999999965 8


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |..|...- ..++.+....++.|+++||. |.|+   +.+.|||+||.|    .++.+|++|||+||+
T Consensus        87 lkkyfdslng~~d~~~~rsfmlqllrgl~-fchs---hnvlhrdlkpqnllin~ngelkladfglara  150 (292)
T KOG0662|consen   87 LKKYFDSLNGDLDPEIVRSFMLQLLRGLG-FCHS---HNVLHRDLKPQNLLINRNGELKLADFGLARA  150 (292)
T ss_pred             HHHHHHhcCCcCCHHHHHHHHHHHHhhhh-hhhh---hhhhhccCCcceEEeccCCcEEecccchhhh
Confidence            98888653 67899999999999999999 9999   899999999999    889999999999985

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.77  E-value=2.4e-18  Score=178.03  Aligned_cols=133  Identities=25%  Similarity=0.314  Sum_probs=112.3

Q ss_pred             hcccCCceEEEEEEEccCC--EEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLEFNG--TQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g--~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|....++  ..+++|.+.... ....+.|.+|+..  .++||||+++++.|......++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            5899999999999764222  356777776543 3345678888776  4899999999999999999999999999999


Q ss_pred             HHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.++++..    ..+++..++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~-~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~  147 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVT-HMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGP  147 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HHHH---CCeeccCCccceEEEcCCccEEeccccccc
Confidence            99999753    34677888999999999999 9999   889999999999    78889999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.77  E-value=7.7e-19  Score=180.56  Aligned_cols=134  Identities=21%  Similarity=0.316  Sum_probs=113.9

Q ss_pred             hhcccCCceEEEEEEEccCC-------EEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFNG-------TQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g-------~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.||+|+||.||+|.....+       ..+|+|.+........++|..|+..  .++|+|++++++++..++..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            46899999999999875333       3489998876554555677777776  48899999999999998999999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC--------cEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN--------IVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~--------~vkI~DFGlar  676 (678)
                      +++|+|.++++.. ..+++..++.++.|++.||+ |||+   .+|+||||||+|    .++        .+|++|||++.
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALH-FLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            9999999999764 46899999999999999999 9999   899999999999    222        27999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.77  E-value=2.2e-18  Score=181.23  Aligned_cols=134  Identities=18%  Similarity=0.233  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||++....+++.||+|.+........+.+..|+..  .++|+|++++++++...+..++||||+++|+|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L  103 (297)
T cd06656          24 FEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  103 (297)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCH
Confidence            3689999999999999876899999999976655555667778776  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ..+++.+++.++.|+++||. |||+   .+++||||||+|    .++.+||+|||+++
T Consensus       104 ~~~~~~-~~~~~~~~~~~~~~l~~~L~-~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~  163 (297)
T cd06656         104 TDVVTE-TCMDEGQIAAVCRECLQALD-FLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (297)
T ss_pred             HHHHHh-CCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEECcCccce
Confidence            999875 56899999999999999999 9999   899999999999    78899999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.77  E-value=2.2e-18  Score=181.09  Aligned_cols=136  Identities=27%  Similarity=0.484  Sum_probs=117.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCE--EEEEEEeccC-chhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGT--QVAVKMLSAS-SVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~--~VAVK~l~~~-~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.++||+|+||.||+|....++.  .+|+|.++.. .....+.|..|+..  .+ +||||+++++++...+..++|+||+
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~   85 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYA   85 (297)
T ss_pred             eeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEec
Confidence            35789999999999999875554  5789988753 33445678888877  35 7999999999999999999999999


Q ss_pred             CCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          611 AKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       611 ~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      ++|+|.++++..                ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~-~lH~---~~ivH~dlkp~Nill~~~~~~kl~  161 (297)
T cd05089          86 PYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQ-YLSE---KQFIHRDLAARNVLVGENLASKIA  161 (297)
T ss_pred             CCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCcCCcceEEECCCCeEEEC
Confidence            999999999643                24889999999999999999 9999   899999999999    78889999


Q ss_pred             eeCCcc
Q 038969          671 TFSIIK  676 (678)
Q Consensus       671 DFGlar  676 (678)
                      |||+++
T Consensus       162 dfg~~~  167 (297)
T cd05089         162 DFGLSR  167 (297)
T ss_pred             CcCCCc
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.77  E-value=2.1e-18  Score=179.08  Aligned_cols=137  Identities=26%  Similarity=0.454  Sum_probs=119.8

Q ss_pred             hhhhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          536 NFEKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.+.||+|+||.||+|....     +++.||||.++..... ..+.|.+|+++  .++|+|++++++++......++||
T Consensus         8 ~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   87 (280)
T cd05049           8 VLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVF   87 (280)
T ss_pred             hHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEE
Confidence            345789999999999998742     3478999999765443 45788899887  489999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC--------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEE
Q 038969          608 EFMAKGNLEEHLSGA--------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKL  669 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~--------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI  669 (678)
                      ||+++|+|.+++...              ..+++.++..++.|++.||+ |||+   .+++||||||+|    .++.+||
T Consensus        88 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~-~lH~---~~i~h~dlkp~nili~~~~~~kl  163 (280)
T cd05049          88 EYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMV-YLAS---QHFVHRDLATRNCLVGYDLVVKI  163 (280)
T ss_pred             ecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHH-HHhh---CCeeccccccceEEEcCCCeEEE
Confidence            999999999999642              34889999999999999999 9999   899999999999    7899999


Q ss_pred             EeeCCcc
Q 038969          670 ITFSIIK  676 (678)
Q Consensus       670 ~DFGlar  676 (678)
                      +|||+++
T Consensus       164 ~d~g~~~  170 (280)
T cd05049         164 GDFGMSR  170 (280)
T ss_pred             CCcccce
Confidence            9999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.77  E-value=1.8e-18  Score=181.60  Aligned_cols=136  Identities=24%  Similarity=0.391  Sum_probs=116.1

Q ss_pred             hhhhcccCCceEEEEEEEccC--------------CEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEc
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN--------------GTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE  599 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~--------------g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~  599 (678)
                      +.+.||+|+||.||++.....              ...||+|.++.. .......|.+|++.  .++|+|++++++++..
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~   88 (295)
T cd05097           9 LKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVS   88 (295)
T ss_pred             ehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcC
Confidence            347899999999999876421              235899999764 33345678888887  4999999999999999


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCC------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGA------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H  663 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~  663 (678)
                      .+..++||||+++++|.+++...            ..+++.++++++.|+++||+ |||+   .+++||||||+|    +
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~-~lH~---~~i~H~dlkp~Nill~~  164 (295)
T cd05097          89 DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMK-YLAS---LNFVHRDLATRNCLVGN  164 (295)
T ss_pred             CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHH-HHHh---cCeeccccChhhEEEcC
Confidence            99999999999999999998642            24789999999999999999 9999   899999999999    7


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      ++.+||+|||+++
T Consensus       165 ~~~~kl~dfg~~~  177 (295)
T cd05097         165 HYTIKIADFGMSR  177 (295)
T ss_pred             CCcEEeccccccc
Confidence            7789999999986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.77  E-value=1.4e-18  Score=195.62  Aligned_cols=135  Identities=20%  Similarity=0.262  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC--------eeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT--------NMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~--------~~~L  605 (678)
                      .+.||+|+||.||+++...+|+.||||++...  .......+.+|+..+  ++|+|+++++..+....        ..++
T Consensus        37 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~l  116 (496)
T PTZ00283         37 SRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIAL  116 (496)
T ss_pred             EEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEE
Confidence            47899999999999998878999999998754  334456778888774  78999999988765432        3689


Q ss_pred             EEecCCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||+++|+|.++++..    ..+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       117 V~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~-~lH~---~~IiHrDLKP~NILl~~~~~vkL~DFGls~  191 (496)
T PTZ00283        117 VLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVH-HVHS---KHMIHRDIKSANILLCSNGLVKLGDFGFSK  191 (496)
T ss_pred             EEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEEeCCCCEEEEecccCe
Confidence            99999999999998643    56899999999999999999 9999   899999999999    78899999999986

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.77  E-value=2.7e-18  Score=178.85  Aligned_cols=134  Identities=22%  Similarity=0.394  Sum_probs=113.1

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+++    .+|+|.+..... ....++..|+..  .+.|+||+++++++. ....++++||+
T Consensus        12 ~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i~e~~   90 (279)
T cd05111          12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLVTQLS   90 (279)
T ss_pred             ccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEEEEeC
Confidence            3689999999999999865555    478888765432 334567777665  488999999999885 45578999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..++|..++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        91 ~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~iiH~dlkp~nili~~~~~~kl~Dfg~~~  157 (279)
T cd05111          91 PLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMY-YLEE---HRMVHRNLAARNILLKSDSIVQIADFGVAD  157 (279)
T ss_pred             CCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCEeccccCcceEEEcCCCcEEEcCCccce
Confidence            999999999754 67999999999999999999 9999   889999999999    78889999999986

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.77  E-value=3.9e-18  Score=178.62  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=121.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+...+++.||+|.+........+++.+|+..  .++|+|++++++++...+..++||||+++|+|
T Consensus        17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l   96 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAV   96 (292)
T ss_pred             hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcH
Confidence            3679999999999999987789999999987766667788888876  48999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ..++.. ...+++..++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        97 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          97 DAIMLELDRGLTEPQIQVICRQMLEALQ-YLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHhc---CCeeecCCCcceEEEcCCCCEEEccCccce
Confidence            988764 367899999999999999999 9999   899999999999    68899999999875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.77  E-value=1.8e-20  Score=181.06  Aligned_cols=136  Identities=17%  Similarity=0.277  Sum_probs=121.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .++||+|.|+.||++.....|+.+|+|++...  +..+.++..+|+.+  +++|||||+|.....+....+||+|+|.||
T Consensus        16 ~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~   95 (355)
T KOG0033|consen   16 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG   95 (355)
T ss_pred             HHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccch
Confidence            37899999999999998888999999988653  33467788889888  699999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      +|..-+-.+...++..+-..++||+++|. |.|.   .+|||||+||.|       ...-+||+|||+|.+
T Consensus        96 dl~~eIV~R~~ySEa~aSH~~rQiLeal~-yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~  162 (355)
T KOG0033|consen   96 ELFEDIVAREFYSEADASHCIQQILEALA-YCHS---NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIE  162 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---cCceeccCChhheeeeeccCCCceeecccceEEE
Confidence            99988766667888999999999999999 9999   899999999999       556799999999975

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.77  E-value=2.4e-18  Score=180.12  Aligned_cols=136  Identities=21%  Similarity=0.295  Sum_probs=121.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|++|.||++....+++.||+|.+....   ....+.+.+|++.  .++|+||+++++++..++..++||||+++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   85 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPG   85 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCC
Confidence            478999999999999998788999999987542   2234567778777  48899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||+|+|    +++.+||+|||+++.
T Consensus        86 ~~L~~~~~~~~~l~~~~~~~~~~qil~~l~-~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~  150 (290)
T cd05580          86 GELFSHLRKSGRFPEPVARFYAAQVVLALE-YLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKR  150 (290)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCccc
Confidence            999999987788999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.77  E-value=2.9e-18  Score=182.99  Aligned_cols=135  Identities=17%  Similarity=0.172  Sum_probs=116.8

Q ss_pred             hhhhcccC--CceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKG--GFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G--~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.++||+|  +|++||++..+.+|+.||+|.+....  ....+.+.+|+.+  .++||||+++++++..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            34789999  78999999998889999999997642  2233456667766  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          611 AKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       611 ~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ++|+|.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.++++||+.+
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALD-YIHH---MGYVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCChhhEEEecCCcEEEcccchh
Confidence            999999999643  56899999999999999999 9999   899999999999    7788999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.77  E-value=2.3e-18  Score=180.07  Aligned_cols=134  Identities=20%  Similarity=0.279  Sum_probs=117.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||++....+++.||||.+.....   .....+.+|+.+  .++|++++++++.+...+..++||||+++|
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~   85 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGG   85 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCC
Confidence            679999999999999987899999999875422   223456677776  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.+++.++.|++.||. |||+   .+|+||||||+|    +++.++|+|||+++
T Consensus        86 ~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05630          86 DLKFHIYHMGEAGFEEGRAVFYAAEICCGLE-DLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLAV  150 (285)
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence            999998543  46999999999999999999 9999   899999999999    77889999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.77  E-value=2.5e-18  Score=180.82  Aligned_cols=133  Identities=17%  Similarity=0.246  Sum_probs=120.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|++|.||+|....+++.||+|.+..........+..|+..  .++|+||+++++.+......++||||+++|+|.
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~  105 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  105 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHH
Confidence            679999999999999877889999999987655556678888776  489999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       106 ~~~~~-~~~~~~~~~~i~~ql~~aL~-~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~  164 (296)
T cd06654         106 DVVTE-TCMDEGQIAAVCRECLQALE-FLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (296)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEcCCCCEEECccccch
Confidence            99975 46899999999999999999 9999   899999999999    78899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.77  E-value=3e-18  Score=175.32  Aligned_cols=135  Identities=22%  Similarity=0.352  Sum_probs=120.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-----hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|++|.||+|....+++.||+|.+....     .+..+++..|+..  .++|+|++++++++......++++||+
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELV   84 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEec
Confidence            367999999999999987788999999986543     2345678888877  389999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++++|.+++.....+++..++.++.|+++||+ |||+   .+|+|+||+|+|    .++.+||+|||+++
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~  150 (258)
T cd06632          85 PGGSLAKLLKKYGSFPEPVIRLYTRQILLGLE-YLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAK  150 (258)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEccCccce
Confidence            99999999987677999999999999999999 9999   899999999999    78899999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.77  E-value=1.1e-18  Score=178.87  Aligned_cols=135  Identities=26%  Similarity=0.403  Sum_probs=119.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHH--HHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK--QFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~--~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+++...+++.+|+|.+.........  ....|+..  .++|+||+++++++......++||||++++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~   83 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGG   83 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTE
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccccc
Confidence            46899999999999999988899999999886543322  23446555  479999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.+++.++.|+++||+ +||+   .+|+||||||+|    +++.++|+|||++.
T Consensus        84 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~-~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   84 SLQDYLQKNKPLSEEEILKIAYQILEALA-YLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSV  146 (260)
T ss_dssp             BHHHHHHHHSSBBHHHHHHHHHHHHHHHH-HHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred             ccccccccccccccccccccccccccccc-cccc---cccccccccccccccccccccccccccccc
Confidence            99999985578999999999999999999 9999   899999999999    78999999999985

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.77  E-value=2.9e-18  Score=181.00  Aligned_cols=135  Identities=15%  Similarity=0.222  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++.....++.||+|.+.....   ...+.+.+|+..  .++|+||+++++.+..++..++||||+++
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEG   85 (305)
T ss_pred             eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            3689999999999999987889999999876532   234567777766  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+++||||||+|    ..+.+||+|||+++
T Consensus        86 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~~  149 (305)
T cd05609          86 GDCATLLKNIGALPVDMARMYFAETVLALE-YLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSK  149 (305)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCchHHEEECCCCCEEEeeCCCcc
Confidence            999999987778999999999999999999 9999   899999999999    78899999999886

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.77  E-value=3.1e-18  Score=179.14  Aligned_cols=135  Identities=24%  Similarity=0.369  Sum_probs=115.0

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|..+     ..+..||+|.+.... .....++.+|+..  .++|+||+++++++......++||||
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   90 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMEL   90 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeC
Confidence            478999999999999754     124589999987543 2334567777766  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +++|+|.+++...          ..+++..+++++.|++.||. |||+   ++|+||||||+|    +++.+||+|||++
T Consensus        91 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~H~dikp~nili~~~~~~~L~Dfg~~  166 (288)
T cd05061          91 MAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA-YLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMT  166 (288)
T ss_pred             CCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCCcCCCCChheEEEcCCCcEEECcCCcc
Confidence            9999999999632          34578889999999999999 9999   899999999999    7889999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       167 ~  167 (288)
T cd05061         167 R  167 (288)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.77  E-value=3.2e-18  Score=180.61  Aligned_cols=137  Identities=26%  Similarity=0.404  Sum_probs=117.9

Q ss_pred             hhhhcccCCceEEEEEEE-----ccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||++..     ...+..||||+++... ....+.+.+|+..  .+ +|+||+++++++...+..++||
T Consensus        39 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  118 (302)
T cd05055          39 FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVIT  118 (302)
T ss_pred             EcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEE
Confidence            357899999999999975     2245589999987653 3345678888877  36 7999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.++++..  ..+++.+++.++.|++.||+ |||+   .+|+|+||||+|    ++..+||+|||+++.
T Consensus       119 e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~  190 (302)
T cd05055         119 EYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMA-FLAS---KNCIHRDLAARNVLLTHGKIVKICDFGLARD  190 (302)
T ss_pred             EcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeehhhhccceEEEcCCCeEEECCCccccc
Confidence            999999999999754  34899999999999999999 9999   899999999999    778899999999873

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=3.4e-18  Score=175.69  Aligned_cols=135  Identities=22%  Similarity=0.374  Sum_probs=120.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-----hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|++|.||++....+++.||+|.+....     ....+.+.+|+..  .++|+||+++++++......++|+||+
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   86 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYM   86 (263)
T ss_pred             cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEEC
Confidence            378999999999999987788999999986432     1234567788776  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++++|.+++.....+++..+.+++.|+++||+ |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        87 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~H~dl~p~nilv~~~~~~~l~dfg~~~  152 (263)
T cd06625          87 PGGSVKDQLKAYGALTETVTRKYTRQILEGVE-YLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK  152 (263)
T ss_pred             CCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            99999999987778999999999999999999 9999   899999999999    77899999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.77  E-value=2.8e-18  Score=179.38  Aligned_cols=134  Identities=19%  Similarity=0.280  Sum_probs=110.2

Q ss_pred             hhhcccCCceEEEEEEEcc-CCEEEEEEEeccCch--hhHHHHHHHHHHh-----cCCCCcccEEEEEE-----cCCeeE
Q 038969          538 EKVIGKGGFGTVYHGYLEF-NGTQVAVKMLSASSV--QGYKQFQAEVQYI-----VHHKNLTTLVGYCD-----EDTNMG  604 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ev~~~-----l~H~NIv~l~g~~~-----~~~~~~  604 (678)
                      .+.||+|+||.||+|+... +++.||+|.++....  .....+.+|+..+     ++||||++++++|.     .....+
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~   85 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   85 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEE
Confidence            4679999999999998743 468899999865421  1233455565542     47999999999985     245689


Q ss_pred             EEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          605 LIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +||||++ |+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        86 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          86 LVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD-FLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             EEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            9999996 6999999753  56899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.77  E-value=2.7e-18  Score=177.00  Aligned_cols=136  Identities=21%  Similarity=0.344  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh---------hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ---------GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~---------~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .+.||+|++|.||+|....+++.+|+|.+......         ..+.+..|+.+  .++|+||+++++++.+.+..++|
T Consensus         5 ~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (267)
T cd06628           5 GALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIF   84 (267)
T ss_pred             cceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEE
Confidence            46799999999999998767899999988653211         12457777776  48999999999999999999999


Q ss_pred             EecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          607 YEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |||+++++|.+++.....+++..+..++.|++.||+ |||+   .+++||||+|+|    +++.+||+|||+++.
T Consensus        85 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~-~lH~---~~ivH~di~p~nil~~~~~~~~l~dfg~~~~  155 (267)
T cd06628          85 LEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLN-YLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKK  155 (267)
T ss_pred             EEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHH-HHHh---cCcccccCCHHHEEEcCCCCEEecccCCCcc
Confidence            999999999999987778999999999999999999 9999   889999999999    888899999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.77  E-value=3e-18  Score=179.53  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=119.2

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|+..     .++..+|+|.+........+.+.+|++.  .++|+||+++++++......++||||+
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   89 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYM   89 (291)
T ss_pred             eeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecC
Confidence            468999999999999753     2346799999987766666788889887  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          611 AKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       611 ~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      ++|+|.+++...                ..+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~-~lH~---~~i~H~dlkp~Nil~~~~~~~~l~  165 (291)
T cd05094          90 KHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMV-YLAS---QHFVHRDLATRNCLVGANLLVKIG  165 (291)
T ss_pred             CCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecccCcceEEEccCCcEEEC
Confidence            999999999642                34899999999999999999 9999   899999999999    78899999


Q ss_pred             eeCCcc
Q 038969          671 TFSIIK  676 (678)
Q Consensus       671 DFGlar  676 (678)
                      |||+++
T Consensus       166 dfg~a~  171 (291)
T cd05094         166 DFGMSR  171 (291)
T ss_pred             CCCccc
Confidence            999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.77  E-value=3.6e-18  Score=178.14  Aligned_cols=136  Identities=20%  Similarity=0.212  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++....+|+.||+|.+.... ....+++.+|+++  .++|+||+++++++......++||||+++|+
T Consensus        10 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   89 (284)
T cd06620          10 ISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGS   89 (284)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCC
Confidence            478999999999999988789999999886543 3345678888887  3899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++..+..++.+++.||. |||+.  .+++||||||+|    +++.++|+|||+++
T Consensus        90 L~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          90 LDRIYKKGGPIPVEILGKIAVAVVEGLT-YLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHHh--cCeeccCCCHHHEEECCCCcEEEccCCccc
Confidence            9999987778999999999999999999 99962  479999999999    78899999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.77  E-value=3.1e-18  Score=178.67  Aligned_cols=135  Identities=27%  Similarity=0.433  Sum_probs=116.8

Q ss_pred             hhhcccCCceEEEEEEEc----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLE----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~E  608 (678)
                      .+.||+|+||.||.++..    .++..||+|.++... ......+.+|+..  .++|+|++++++++...  ...++|||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (284)
T cd05079           9 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME   88 (284)
T ss_pred             ceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEE
Confidence            367999999999999752    357789999987553 3345678888887  48999999999999764  56899999


Q ss_pred             cCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++... ..++|.+++.++.|++.||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        89 ~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~-~lH~---~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          89 FLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMD-YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             ccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecccchheEEEcCCCCEEECCCcccc
Confidence            99999999999654 46899999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.77  E-value=2.5e-18  Score=180.45  Aligned_cols=134  Identities=21%  Similarity=0.315  Sum_probs=118.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-----hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-----GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-----~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|++|.||+|....+|+.||||.+......     ....+..|+..  .++|+||+++++++...+..++||||+
T Consensus         5 ~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (298)
T cd07841           5 GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM   84 (298)
T ss_pred             eeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc
Confidence            46799999999999998767899999999765322     23445667666  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~-~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                       +|+|.+++.... .+++.++++++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        85 -~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~  150 (298)
T cd07841          85 -ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLE-YLHS---NWILHRDLKPNNLLIASDGVLKLADFGLAR  150 (298)
T ss_pred             -CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecCCChhhEEEcCCCCEEEccceeee
Confidence             899999998764 7999999999999999999 9999   899999999999    88899999999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.77  E-value=3.3e-18  Score=178.03  Aligned_cols=135  Identities=19%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|+.+.+|+.||+|++....  ....+.+.+|+.+  .++|+|++++++++......++||||++++
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~   85 (286)
T cd07847           6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHT   85 (286)
T ss_pred             eeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCcc
Confidence            367999999999999998779999999986542  2233567788777  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .|..++.....+++.+++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~ql~~~l~-~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (286)
T cd07847          86 VLNELEKNPRGVPEHLIKKIIWQTLQAVN-FCHK---HNCIHRDVKPENILITKQGQIKLCDFGFAR  148 (286)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCChhhEEEcCCCcEEECccccce
Confidence            99888776667999999999999999999 9999   899999999999    77899999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.77  E-value=4.4e-18  Score=176.97  Aligned_cols=134  Identities=25%  Similarity=0.416  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+|.    .+|+|.+.... .....++.+|+..  .++|+|+++++++|.. ...++||||+
T Consensus        12 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~   90 (279)
T cd05057          12 IKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQLM   90 (279)
T ss_pred             cceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEecC
Confidence            4789999999999998764443    69999987654 3345678888877  4899999999999987 7889999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++..+++++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        91 ~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~i~H~di~p~nil~~~~~~~kL~dfg~~~  157 (279)
T cd05057          91 PLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMS-YLEE---KRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (279)
T ss_pred             CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEecccCcceEEEcCCCeEEECCCcccc
Confidence            999999999864 56999999999999999999 9999   899999999999    78899999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.77  E-value=4.7e-18  Score=176.92  Aligned_cols=132  Identities=22%  Similarity=0.301  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .++||+|+||.||+|....+++.||+|.+... .....++|..|+..  .++|+||+++++++...+..++||||+++|+
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   85 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGS   85 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCC
Confidence            47899999999999998778899999998754 33345678888877  3899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |..+.    .+++..+..++.|++.||+ |||+   .+|+|+||||+|    .++.+||+|||+++.
T Consensus        86 l~~~~----~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~  144 (279)
T cd06619          86 LDVYR----KIPEHVLGRIAVAVVKGLT-YLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ  144 (279)
T ss_pred             hHHhh----cCCHHHHHHHHHHHHHHHH-HHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCccee
Confidence            97663    4789999999999999999 9999   899999999999    888999999999863

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.77  E-value=3.9e-18  Score=174.79  Aligned_cols=133  Identities=23%  Similarity=0.341  Sum_probs=117.8

Q ss_pred             hhcccCCceEEEEEEEcc-CC--EEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEF-NG--TQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-~g--~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|++|.||+|.+.. .+  ..||+|.++.... ...++|..|+..  .++|+||+++++++.. ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998753 23  3699999987755 566788899887  4899999999999988 889999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++...  ..++|..++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~  145 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMR-YLES---KRFIHRDLAARNILLASDDKVKIGDFGLMR  145 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHH-HHHh---CCccccccCcccEEEecCCEEEeccccccc
Confidence            9999999764  36899999999999999999 9999   899999999999    77899999999876

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.77  E-value=5.4e-18  Score=174.22  Aligned_cols=134  Identities=25%  Similarity=0.394  Sum_probs=113.4

Q ss_pred             hhcccCCceEEEEEEEcc---CCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEE-cCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEF---NGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCD-EDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~-~~~~~~LV~Ey~~  611 (678)
                      +.||+|+||.||+|....   .+..||+|.+... .....+.+..|+..  .++|+|++++++++. ..+..++|+||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            468999999999998642   2357999998643 33445677788776  489999999999876 4556889999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++... ..+++..++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~  146 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGME-YLAS---KKFVHRDLAARNCMLDESFTVKVADFGLAR  146 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccccccCcceEEEcCCCcEEECCccccc
Confidence            99999999754 45788999999999999999 9999   899999999999    78889999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.77  E-value=3.7e-18  Score=180.02  Aligned_cols=136  Identities=25%  Similarity=0.450  Sum_probs=116.8

Q ss_pred             hhhhcccCCceEEEEEEEc-------cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE-------FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~L  605 (678)
                      +.+.||+|+||.||+++..       .++..||+|.+.... ....+++.+|+..  ++ +|+||+++++++......++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   98 (304)
T cd05101          19 LGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   98 (304)
T ss_pred             ecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEE
Confidence            4578999999999999742       134579999987542 3445678888877  36 89999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          606 IYEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      ||||+++|+|.+++...                ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~LH~---~givH~dlkp~Nili~~~~  174 (304)
T cd05101          99 IVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGME-YLAS---QKCIHRDLAARNVLVTENN  174 (304)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHH-HHHH---CCeeecccccceEEEcCCC
Confidence            99999999999999642                35789999999999999999 9999   899999999999    788


Q ss_pred             cEEEEeeCCcc
Q 038969          666 IVKLITFSIIK  676 (678)
Q Consensus       666 ~vkI~DFGlar  676 (678)
                      .+||+|||+|+
T Consensus       175 ~~kl~D~g~~~  185 (304)
T cd05101         175 VMKIADFGLAR  185 (304)
T ss_pred             cEEECCCccce
Confidence            99999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-18  Score=183.62  Aligned_cols=137  Identities=23%  Similarity=0.343  Sum_probs=123.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +++.||+|.|+.|-.+++-..|..||||++.+....  ....+..|++.  +++|||||+|+.+......+|||+|.-.+
T Consensus        22 LekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~  101 (864)
T KOG4717|consen   22 LEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG  101 (864)
T ss_pred             hhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence            457899999999999998889999999999876433  34567778877  49999999999999999999999999999


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      |+|.+|+.++ ..+.+....+++.||..|+. |.|+   ..+|||||||+|     +-+-|||+|||++..
T Consensus       102 GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~-YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFGFSNk  168 (864)
T KOG4717|consen  102 GDLFDYIMKHEEGLNEDLAKKYFAQIVHAIS-YCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFGFSNK  168 (864)
T ss_pred             chHHHHHHhhhccccHHHHHHHHHHHHHHHH-HHhh---hhhhcccCCcceeEEeeecCceEeeecccccc
Confidence            9999999865 77999999999999999999 9999   889999999999     788999999999753

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.77  E-value=3.2e-18  Score=176.91  Aligned_cols=134  Identities=23%  Similarity=0.396  Sum_probs=115.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEcC------CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDED------TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~------~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....+++.||+|.+.... ....++..|+..  .+ +|+||+++++++...      ...++|||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e   89 (272)
T cd06637          11 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME   89 (272)
T ss_pred             HHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEE
Confidence            367999999999999988788999999987543 334566777766  34 799999999998652      45899999


Q ss_pred             cCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++...  ..+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        90 ~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~-~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          90 FCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLS-HLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCCHHHEEECCCCCEEEccCCCce
Confidence            99999999999853  56899999999999999999 9999   899999999999    78889999999986

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.76  E-value=4.5e-18  Score=178.07  Aligned_cols=135  Identities=24%  Similarity=0.449  Sum_probs=116.7

Q ss_pred             hhhcccCCceEEEEEEEcc-----CCEEEEEEEeccC-chhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSAS-SVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||++....     ....+|+|.+... ......++.+|+..  ++ +|+||+++++++..++..+++||
T Consensus        17 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e   96 (293)
T cd05053          17 GKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVE   96 (293)
T ss_pred             eeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEE
Confidence            4689999999999998752     2368999998764 23345567888776  35 89999999999999999999999


Q ss_pred             cCCCCCHHHhhcC----------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          609 FMAKGNLEEHLSG----------------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       609 y~~~GsL~~~L~~----------------~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                      |+++|+|.++++.                ...+++..+++++.|++.||+ |||+   .+|+||||||+|    +++.+|
T Consensus        97 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~-~LH~---~~ivH~dlkp~Nil~~~~~~~k  172 (293)
T cd05053          97 YAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGME-FLAS---KKCIHRDLAARNVLVTEDHVMK  172 (293)
T ss_pred             eCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHH-HHHH---CCccccccceeeEEEcCCCeEE
Confidence            9999999999953                246899999999999999999 9999   899999999999    888999


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+++
T Consensus       173 L~Dfg~~~  180 (293)
T cd05053         173 IADFGLAR  180 (293)
T ss_pred             eCcccccc
Confidence            99999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.76  E-value=4.9e-18  Score=177.96  Aligned_cols=135  Identities=24%  Similarity=0.397  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccC----------------CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFN----------------GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCD  598 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~----------------g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~  598 (678)
                      .+.||+|+||.||++.....                +..||+|.+.... ....++|.+|+..  .++|+||+++++++.
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   89 (296)
T cd05051          10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCT   89 (296)
T ss_pred             cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence            47899999999999887532                2468999997653 3446678888877  489999999999999


Q ss_pred             cCCeeEEEEecCCCCCHHHhhcCCC-----------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C
Q 038969          599 EDTNMGLIYEFMAKGNLEEHLSGAN-----------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H  663 (678)
Q Consensus       599 ~~~~~~LV~Ey~~~GsL~~~L~~~~-----------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~  663 (678)
                      .++..+++|||+++++|.+++....           .+++..++.++.|+++||+ |||+   .+|+||||||+|    +
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~-~LH~---~~i~H~dlkp~Nili~~  165 (296)
T cd05051          90 VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMR-YLES---LNFVHRDLATRNCLVGK  165 (296)
T ss_pred             cCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHH-HHHH---cCccccccchhceeecC
Confidence            9999999999999999999997643           6899999999999999999 9999   899999999999    7


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      ++.+||+|||+++
T Consensus       166 ~~~~~l~dfg~~~  178 (296)
T cd05051         166 NYTIKIADFGMSR  178 (296)
T ss_pred             CCceEEcccccee
Confidence            7899999999986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.76  E-value=3.8e-18  Score=175.92  Aligned_cols=135  Identities=21%  Similarity=0.357  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-----chhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-----SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-----~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....+|+.||+|.+...     .....+.+.+|+..  .++|+||+++++++.+  ....+++||
T Consensus         7 ~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFME   86 (265)
T ss_pred             eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEE
Confidence            36899999999999998878999999988532     12234567888877  4899999999998865  346789999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.....+++...++++.|++.||+ |||+   .+|+|+||||+|    .++.+||+|||+++
T Consensus        87 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~  154 (265)
T cd06652          87 HMPGGSIKDQLKSYGALTENVTRKYTRQILEGVS-YLHS---NMIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             ecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEecCCCCEEECcCcccc
Confidence            9999999999986667899999999999999999 9999   889999999999    77899999999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.76  E-value=3.8e-18  Score=176.49  Aligned_cols=135  Identities=19%  Similarity=0.326  Sum_probs=118.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch----------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV----------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~----------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~L  605 (678)
                      .+.||+|++|.||+|....+|+.||+|.++....          ...+.+..|+..  .++|+|++++++++...+..++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   85 (272)
T cd06629           6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSI   85 (272)
T ss_pred             cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEE
Confidence            3689999999999999877889999998864211          012356777766  4899999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||+++|+|.++++....+++..+..++.|+++||. |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        86 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~~~nil~~~~~~~~l~d~~~~~  156 (272)
T cd06629          86 FLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLA-YLHS---KGILHRDLKADNLLVDADGICKISDFGISK  156 (272)
T ss_pred             EEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhh---CCeeecCCChhhEEEcCCCeEEEeeccccc
Confidence            9999999999999987778999999999999999999 9999   899999999999    78899999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.76  E-value=4.4e-18  Score=177.20  Aligned_cols=135  Identities=25%  Similarity=0.445  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||++...     .++..+|+|.+........+.|.+|++.  .++|+||+++++++......+++|||+
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   89 (280)
T cd05092          10 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYM   89 (280)
T ss_pred             ccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecC
Confidence            478999999999999642     2456899999987766667789899887  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEe
Q 038969          611 AKGNLEEHLSGA---------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLIT  671 (678)
Q Consensus       611 ~~GsL~~~L~~~---------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~D  671 (678)
                      ++|+|.+++...               ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+|
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~-~LH~---~~i~H~dlkp~nil~~~~~~~kL~d  165 (280)
T cd05092          90 RHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMV-YLAS---LHFVHRDLATRNCLVGQGLVVKIGD  165 (280)
T ss_pred             CCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHH-HHHH---CCeecccccHhhEEEcCCCCEEECC
Confidence            999999999753               24899999999999999999 9999   899999999999    788899999


Q ss_pred             eCCcc
Q 038969          672 FSIIK  676 (678)
Q Consensus       672 FGlar  676 (678)
                      ||+++
T Consensus       166 fg~~~  170 (280)
T cd05092         166 FGMSR  170 (280)
T ss_pred             CCcee
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.76  E-value=3.9e-18  Score=176.76  Aligned_cols=135  Identities=22%  Similarity=0.354  Sum_probs=117.3

Q ss_pred             hhhcccCCceEEEEEEEccC-----CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-----GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-----g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|.....     +..||+|.+.... .....+|.+|+..  .++|+||+++++++......++||||
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   90 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMEL   90 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEec
Confidence            47899999999999987532     3789999987553 3445678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +++|+|.+++...          ..++|..++.++.|++.||. |||+   .+|+||||||+|    +++.+||+|||++
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~di~p~nill~~~~~~kl~dfg~~  166 (277)
T cd05032          91 MAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA-YLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMT  166 (277)
T ss_pred             CCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccccccChheEEEcCCCCEEECCcccc
Confidence            9999999999642          24789999999999999999 9999   899999999999    8889999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       167 ~  167 (277)
T cd05032         167 R  167 (277)
T ss_pred             h
Confidence            6

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.76  E-value=5.2e-18  Score=174.86  Aligned_cols=135  Identities=16%  Similarity=0.270  Sum_probs=118.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||||.++..   .......|.+|+..  .++|||++++++++...+..++|+||+++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   86 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADA   86 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCC
Confidence            47899999999999998878999999987642   23344568888877  38999999999999999999999999999


Q ss_pred             CCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++..    ...+++.+++.++.|+++||+ |||+   .+++||||||+|    .++.++|+|||+++
T Consensus        87 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g~~~  154 (267)
T cd08228          87 GDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVE-HMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGR  154 (267)
T ss_pred             CcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHH-HHhh---CCeeCCCCCHHHEEEcCCCCEEECccccce
Confidence            999988852    255899999999999999999 9999   899999999999    77889999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.76  E-value=4.4e-18  Score=177.20  Aligned_cols=133  Identities=20%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH-----hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY-----IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~-----~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +||+|+||.||++....+++.||+|.+.....   .....+..|...     ..+|+|++++++++...+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            48999999999999876789999999875421   222233334322     2579999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~-~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~  145 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLE-HMHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCcc
Confidence            9999999987778999999999999999999 9999   899999999999    77899999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=4.6e-18  Score=174.70  Aligned_cols=134  Identities=20%  Similarity=0.261  Sum_probs=116.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|++|.||+|....+|+.||||.+.....   .....+..|...   ..+|+|++++++++..++..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            468999999999999877889999999875432   222334444433   36899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.++.+++.|+++||. |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  145 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVE-DLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSR  145 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEECCCCcEEEeecccce
Confidence            999999987678999999999999999999 9999   899999999999    77889999999886

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.76  E-value=5e-18  Score=177.64  Aligned_cols=135  Identities=24%  Similarity=0.369  Sum_probs=116.4

Q ss_pred             hhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....     ....+|+|.+.... ....+++..|+..  .++||||+++++.|...+..++++||
T Consensus         5 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (290)
T cd05045           5 GKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEY   84 (290)
T ss_pred             cccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEe
Confidence            4689999999999998642     23579999987643 3345678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC------------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          610 MAKGNLEEHLSGA------------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       610 ~~~GsL~~~L~~~------------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      +++|+|.+++...                        ..+++.+++.++.|++.||+ |||+   .+|+||||||+|   
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~---~~ivH~dikp~nill  160 (290)
T cd05045          85 AKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQ-YLAE---MKLVHRDLAARNVLV  160 (290)
T ss_pred             cCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHH-HHHH---CCeehhhhhhheEEE
Confidence            9999999998531                        35889999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       +++.+||+|||+++
T Consensus       161 ~~~~~~kl~dfg~~~  175 (290)
T cd05045         161 AEGRKMKISDFGLSR  175 (290)
T ss_pred             cCCCcEEeccccccc
Confidence             78899999999986

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.76  E-value=4.9e-18  Score=176.52  Aligned_cols=135  Identities=27%  Similarity=0.410  Sum_probs=116.8

Q ss_pred             hhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|++|.||+|....     .+..||+|.+.... ......|.+|+..  .++|+||+++++++.+....++||||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   90 (277)
T cd05036          11 LRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLEL   90 (277)
T ss_pred             eeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEec
Confidence            3789999999999999874     46789999987543 3345678888777  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA-------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~-------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGla  675 (678)
                      +++|+|.+++...       ..++|.++++++.|+++||+ |||+   .+++||||||+|    .   ...+||+|||++
T Consensus        91 ~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~  166 (277)
T cd05036          91 MAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCK-YLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMA  166 (277)
T ss_pred             CCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccchheEEEeccCCCcceEeccCccc
Confidence            9999999999653       25899999999999999999 9999   889999999999    2   346999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       167 ~  167 (277)
T cd05036         167 R  167 (277)
T ss_pred             c
Confidence            6

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.76  E-value=5.1e-18  Score=174.96  Aligned_cols=133  Identities=23%  Similarity=0.408  Sum_probs=115.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... +...||+|+++.... ..++|.+|+..  .++|+||+++++++. ....++||||+++|+
T Consensus        10 ~~~~lg~g~~~~v~~~~~~-~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~   86 (262)
T cd05071          10 LEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGS   86 (262)
T ss_pred             EeeecCCCCCCcEEEEEec-CCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCCCc
Confidence            4578999999999999886 556799999975432 34578888877  489999999999875 456899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~-~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          87 LLDFLKGEMGKYLRLPQLVDMAAQIASGMA-YVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             HHHHHhhccccCCCHHHHHHHHHHHHHHHH-HHHH---CCccccccCcccEEEcCCCcEEeccCCcee
Confidence            99999753  46899999999999999999 9999   899999999999    77889999999886

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.76  E-value=5.5e-18  Score=176.00  Aligned_cols=133  Identities=22%  Similarity=0.288  Sum_probs=119.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|....+++.||+|.+.... ....+.+..|+..  .++|+||+++++++...+..++||||+++|+|
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSA   89 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcH
Confidence            67999999999999987778999999987543 3345678888877  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ..+++..+..++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||+++
T Consensus        90 ~~~~~~-~~~~~~~~~~~~~~i~~~l~-~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06642          90 LDLLKP-GPLEETYIATILREILKGLD-YLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             HHHhhc-CCCCHHHHHHHHHHHHHHHH-HHhc---CCeeccCCChheEEEeCCCCEEEccccccc
Confidence            999875 56899999999999999999 9999   899999999999    78899999999886

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.76  E-value=4e-18  Score=175.24  Aligned_cols=136  Identities=25%  Similarity=0.395  Sum_probs=117.7

Q ss_pred             HhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          534 TNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       534 t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      ...+.++||+|+||.||+|..+ +++.||+|.+..... ...+|.+|+..  .++|+|++++++++. .+..+++|||++
T Consensus         7 ~~~~~~~ig~G~~g~v~~~~~~-~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05067           7 TLKLVKKLGAGQFGEVWMGYYN-GHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYME   83 (260)
T ss_pred             HceeeeeeccCccceEEeeecC-CCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCC
Confidence            3345688999999999999976 788999999876443 34578888777  489999999999864 567899999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++...  ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.++|+|||+++
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~-~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          84 NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMA-FIER---KNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHhc---CCeecccccHHhEEEcCCCCEEEccCccee
Confidence            99999998653  56899999999999999999 9999   899999999999    78889999999886

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.76  E-value=4.6e-18  Score=179.63  Aligned_cols=136  Identities=26%  Similarity=0.450  Sum_probs=116.4

Q ss_pred             hhhhcccCCceEEEEEEEcc-------CCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEF-------NGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~-------~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~L  605 (678)
                      +.+.||+|+||.||+++...       ....+|+|.++... .....++..|+..+  + +|+||++++++|...+..++
T Consensus        22 i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (307)
T cd05098          22 LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  101 (307)
T ss_pred             EeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            45789999999999997531       23579999997642 33455677787763  5 79999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          606 IYEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      ||||+++|+|.+++...                ..+++.++++++.|++.||+ |||+   .+++||||||+|    +++
T Consensus       102 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~-~lH~---~gi~H~dlkp~Nill~~~~  177 (307)
T cd05098         102 IVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGME-YLAS---KKCIHRDLAARNVLVTEDN  177 (307)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHH-HHHH---CCcccccccHHheEEcCCC
Confidence            99999999999999753                24899999999999999999 9999   899999999999    778


Q ss_pred             cEEEEeeCCcc
Q 038969          666 IVKLITFSIIK  676 (678)
Q Consensus       666 ~vkI~DFGlar  676 (678)
                      .+||+|||+|+
T Consensus       178 ~~kL~dfg~a~  188 (307)
T cd05098         178 VMKIADFGLAR  188 (307)
T ss_pred             cEEECCCcccc
Confidence            99999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=6.9e-18  Score=173.18  Aligned_cols=135  Identities=19%  Similarity=0.275  Sum_probs=122.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||++....+++.+|+|.+........+.+.+|+..  .++|+|++++++++......+++|||+++++|
T Consensus         8 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l   87 (262)
T cd06613           8 IQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSL   87 (262)
T ss_pred             EEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcH
Confidence            4689999999999999876788999999987655566788888877  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.++..++.|++.||+ |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~-~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  149 (262)
T cd06613          88 QDIYQVTRGPLSELQIAYVCRETLKGLA-YLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSA  149 (262)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHH-HHHh---CCceecCCChhhEEECCCCCEEECccccch
Confidence            9999765 68999999999999999999 9999   899999999999    78889999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.76  E-value=3.5e-18  Score=176.10  Aligned_cols=135  Identities=18%  Similarity=0.303  Sum_probs=119.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc------hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS------VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~------~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|++|.||++....+++.||+|.+....      ....+.+.+|+..  .++|+||+++++++.+.+..++|+||
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~   84 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEW   84 (268)
T ss_pred             cceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEec
Confidence            367999999999999987788999999987532      1134678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC-CcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK-NIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~-~~vkI~DFGlar  676 (678)
                      +++++|.+++.....+++..+++++.|+++||+ |||+   .+++||||+|+|    .. ..+||+|||+++
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~-~LH~---~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630          85 MAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLS-YLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             cCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence            999999999987778999999999999999999 9999   899999999999    33 469999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.76  E-value=5.6e-18  Score=174.57  Aligned_cols=134  Identities=25%  Similarity=0.477  Sum_probs=118.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc------hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS------VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~------~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|... +|+.+|||.+....      ......+.+|++.  .++|+||+++++++.+.+..++||||
T Consensus         5 ~~~ig~g~~~~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (265)
T cd06631           5 GEVLGKGAYGTVYCGLTN-QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEF   83 (265)
T ss_pred             cceEeccCCeEEEEEEEc-CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEec
Confidence            367999999999999875 78899999986532      1223457778777  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++.....+++..+..++.|++.||+ |||+   .+|+|+||+|+|    +++.+||+|||+++
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  150 (265)
T cd06631          84 VPGGSISSILNRFGPLPEPVFCKYTKQILDGVA-YLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGCAR  150 (265)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCcCHHhEEECCCCeEEeccchhhH
Confidence            999999999987677899999999999999999 9999   889999999999    78899999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.76  E-value=6.4e-18  Score=175.60  Aligned_cols=135  Identities=24%  Similarity=0.439  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEcc----CCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEF----NGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~----~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~E  608 (678)
                      .+.||+|+||.||++....    .++.+|||.++..... ..++|.+|+..  .++|+||+++++++..  +...++|||
T Consensus         9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   88 (284)
T cd05038           9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIME   88 (284)
T ss_pred             heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEe
Confidence            4789999999999998642    3679999999865443 46788999877  4899999999999977  567899999


Q ss_pred             cCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          89 YLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMD-YLGS---QRYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             cCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHhEEEcCCCCEEEccccccc
Confidence            99999999999764 36999999999999999999 9999   899999999999    77899999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.76  E-value=3e-18  Score=190.53  Aligned_cols=128  Identities=13%  Similarity=0.046  Sum_probs=112.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||++.....++.||||....      ..+.+|+++  .++|+|||++++++..++..+||||++. |+|
T Consensus       174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L  246 (461)
T PHA03211        174 HRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDL  246 (461)
T ss_pred             EEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCH
Confidence            3679999999999999987789999996432      234567666  4999999999999999999999999995 799


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..++|.+++.|+.|+++||+ |||+   .+||||||||+|    ..+.+||+|||+|+
T Consensus       247 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~-yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~  308 (461)
T PHA03211        247 YTYLGARLRPLGLAQVTAVARQLLSAID-YIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAAC  308 (461)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEECcCCHHHEEECCCCCEEEcccCCce
Confidence            9998754 57999999999999999999 9999   899999999999    77889999999986

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.76  E-value=4.1e-18  Score=182.73  Aligned_cols=137  Identities=26%  Similarity=0.434  Sum_probs=113.9

Q ss_pred             hhhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEc-CCeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDE-DTNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~-~~~~~LV  606 (678)
                      +.+.||+|+||.||+|....     .++.||+|+++... ....+.+..|+..  .+ +|+||++++++|.. +...+++
T Consensus        11 i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v   90 (337)
T cd05054          11 LGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (337)
T ss_pred             hhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEE
Confidence            35789999999999997431     34689999997543 2334567778776  35 89999999998864 4568899


Q ss_pred             EecCCCCCHHHhhcCC-------------------------------------------------------------CCC
Q 038969          607 YEFMAKGNLEEHLSGA-------------------------------------------------------------NTL  625 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~-------------------------------------------------------------~~l  625 (678)
                      |||+++|+|.+++...                                                             ..+
T Consensus        91 ~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (337)
T cd05054          91 VEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPL  170 (337)
T ss_pred             EecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCC
Confidence            9999999999998531                                                             268


Q ss_pred             CHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          626 TWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       626 ~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|..+.+++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       171 ~~~~~~~~~~qi~~aL~-~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~  222 (337)
T cd05054         171 TLEDLISYSFQVARGME-FLAS---RKCIHRDLAARNILLSENNVVKICDFGLARD  222 (337)
T ss_pred             CHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCcceEEEeCCCcEEEeccccchh
Confidence            99999999999999999 9999   899999999999    788999999999863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.76  E-value=4.5e-18  Score=181.99  Aligned_cols=138  Identities=25%  Similarity=0.442  Sum_probs=117.3

Q ss_pred             hhhhhcccCCceEEEEEEEcc-------CCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeE
Q 038969          536 NFEKVIGKGGFGTVYHGYLEF-------NGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMG  604 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~-------~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~  604 (678)
                      .+.+.||+|+||.||++....       .+..||+|.++... ....+++.+|+..  .+ +|+||++++++|...+..+
T Consensus        15 ~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~   94 (334)
T cd05100          15 TLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLY   94 (334)
T ss_pred             eecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceE
Confidence            345789999999999997531       12379999987542 3345678888877  35 7999999999999999999


Q ss_pred             EEEecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC
Q 038969          605 LIYEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK  664 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~  664 (678)
                      ++|||+++|+|.+++...                ..++|.+++.++.|+++||+ |||+   .+|+||||||+|    ++
T Consensus        95 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~-~LH~---~givH~dlkp~Nill~~~  170 (334)
T cd05100          95 VLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGME-YLAS---QKCIHRDLAARNVLVTED  170 (334)
T ss_pred             EEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccccceEEEcCC
Confidence            999999999999998642                35889999999999999999 9999   899999999999    78


Q ss_pred             CcEEEEeeCCccc
Q 038969          665 NIVKLITFSIIKN  677 (678)
Q Consensus       665 ~~vkI~DFGlar~  677 (678)
                      +.+||+|||+++.
T Consensus       171 ~~~kL~Dfg~~~~  183 (334)
T cd05100         171 NVMKIADFGLARD  183 (334)
T ss_pred             CcEEECCccccee
Confidence            8999999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.76  E-value=2.8e-18  Score=178.86  Aligned_cols=147  Identities=21%  Similarity=0.335  Sum_probs=120.0

Q ss_pred             ccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEE-
Q 038969          525 FSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCD-  598 (678)
Q Consensus       525 fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~-  598 (678)
                      +.++++..+.++|+  +.||+|+||.||++.....++.+|+|.++.... ...++.+|+.+  .+ +|+||+++++++. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            33444555555553  789999999999999987889999999865322 23456677665  35 7999999999884 


Q ss_pred             ----cCCeeEEEEecCCCCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          599 ----EDTNMGLIYEFMAKGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       599 ----~~~~~~LV~Ey~~~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                          .++..++||||+++|+|.+++..    ...+++..+..++.|+++||. |||+   .+|+||||||+|    +++.
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~nili~~~~~  162 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQ-HLHV---NKTIHRDVKGNNILLTTEGG  162 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHH-HHHh---CCccccCCCHHhEEECCCCC
Confidence                34568999999999999998752    256899999999999999999 9999   899999999999    7778


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+++
T Consensus       163 ~kl~dfg~~~  172 (286)
T cd06638         163 VKLVDFGVSA  172 (286)
T ss_pred             EEEccCCcee
Confidence            9999999986

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.76  E-value=5.2e-18  Score=174.90  Aligned_cols=136  Identities=17%  Similarity=0.280  Sum_probs=119.6

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.+.||+|++|.||++....+++.+|||.+....   .....+|..|+..  .++|+||+++++++.+.+..+++|||++
T Consensus         6 ~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~   85 (267)
T cd08229           6 IEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELAD   85 (267)
T ss_pred             hhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecC
Confidence            3478999999999999987789999999886532   2344678888877  3899999999999999999999999999


Q ss_pred             CCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|.+++..    ...+++.+++.++.|+++||+ |||+   .+++|+||||+|    .++.+||+|||+++
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  154 (267)
T cd08229          86 AGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALE-HMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGR  154 (267)
T ss_pred             CCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCCEEECcchhhh
Confidence            9999999863    256899999999999999999 9999   899999999999    78889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.76  E-value=6e-18  Score=179.37  Aligned_cols=137  Identities=26%  Similarity=0.458  Sum_probs=116.9

Q ss_pred             hhhhcccCCceEEEEEEEc-------cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE-------FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~L  605 (678)
                      +.+.||+|+||.||++...       .....+|+|+++... .....++..|+..+  + +|+||++++++|...+..++
T Consensus        16 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (314)
T cd05099          16 LGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYV   95 (314)
T ss_pred             eeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEE
Confidence            4578999999999999752       134579999987542 34456788887763  5 69999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          606 IYEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      +|||+++|+|.+++...                ..+++.++++++.|++.||+ |||+   .+|+||||||+|    +++
T Consensus        96 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~-~lH~---~gi~H~dlkp~Nill~~~~  171 (314)
T cd05099          96 IVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGME-YLES---RRCIHRDLAARNVLVTEDN  171 (314)
T ss_pred             EEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHH-HHHH---CCeeeccccceeEEEcCCC
Confidence            99999999999999642                35899999999999999999 9999   899999999999    788


Q ss_pred             cEEEEeeCCccc
Q 038969          666 IVKLITFSIIKN  677 (678)
Q Consensus       666 ~vkI~DFGlar~  677 (678)
                      .+||+|||+++.
T Consensus       172 ~~kL~Dfg~~~~  183 (314)
T cd05099         172 VMKIADFGLARG  183 (314)
T ss_pred             cEEEcccccccc
Confidence            899999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.76  E-value=3.2e-18  Score=175.56  Aligned_cols=132  Identities=18%  Similarity=0.256  Sum_probs=118.3

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||+++...+|+.+|+|.+.....   ...+.+.+|++.  .++|+|++++++.+..+...+++|||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999986799999999976533   345567777766  48899999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.....+++..++.++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~-~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~  141 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALE-YLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSK  141 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---cCeecCCCCHHHeEEcCCCCEEEEecccch
Confidence            999987668999999999999999999 9999   899999999999    88899999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.76  E-value=4.3e-18  Score=177.58  Aligned_cols=137  Identities=18%  Similarity=0.284  Sum_probs=120.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.+.||+|+||.||++.....|+.||+|.+... ......++.+|+..  .++|+||+++++++...+..++||||++++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAG   84 (286)
T ss_pred             hhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCC
Confidence            347899999999999998778899999988754 33345678888777  489999999999999999999999999999


Q ss_pred             CHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...   ..+++..+..++.|+++||. |||+.  .+|+||||||+|    .++.+||+|||+++
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  151 (286)
T cd06622          85 SLDKLYAGGVATEGIPEDVLRRITYAVVKGLK-FLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSG  151 (286)
T ss_pred             CHHHHHHhccccCCCCHHHHHHHHHHHHHHHH-HHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcc
Confidence            999998763   47999999999999999999 99962  479999999999    77889999999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.76  E-value=5.9e-18  Score=172.98  Aligned_cols=136  Identities=26%  Similarity=0.464  Sum_probs=120.4

Q ss_pred             hhhhcccCCceEEEEEEEccCC----EEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG----TQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g----~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+++....+    ..||+|.+...... ..+.+..|+..  .++|+||+++++++.+.+..+++|||
T Consensus         3 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~   82 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEY   82 (258)
T ss_pred             ccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEec
Confidence            3468999999999999987544    88999999765433 56788888877  38999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCC--CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANT--LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~--l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++++|.+++.....  +++.++..++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~-~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~~~  151 (258)
T smart00219       83 MEGGDLLDYLRKNRPKELSLSDLLSFALQIARGME-YLES---KNFIHRDLAARNCLVGENLVVKISDFGLSR  151 (258)
T ss_pred             cCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHH-HHhc---CCeeecccccceEEEccCCeEEEcccCCce
Confidence            999999999976533  999999999999999999 9999   899999999999    77789999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=7.5e-19  Score=187.45  Aligned_cols=133  Identities=23%  Similarity=0.308  Sum_probs=118.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||.|.||.||.++...+...||||.++-+..   ..+.++.+||..+  ++|||.+.+-|||......|||||||- |
T Consensus        32 rEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl-G  110 (948)
T KOG0577|consen   32 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL-G  110 (948)
T ss_pred             HHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh-c
Confidence            569999999999999988889999999976533   4567788999884  999999999999999999999999995 5


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +-.+.|.-. +++.+.++..|+.++++||+ |||+   ...||||||+.|    +.+.|||+|||-|.
T Consensus       111 SAsDlleVhkKplqEvEIAAi~~gaL~gLa-YLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSAs  174 (948)
T KOG0577|consen  111 SASDLLEVHKKPLQEVEIAAITHGALQGLA-YLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSAS  174 (948)
T ss_pred             cHHHHHHHHhccchHHHHHHHHHHHHHHHH-HHHH---hhHHhhhccccceEecCCCeeeeccccchh
Confidence            777777533 78999999999999999999 9999   889999999999    99999999999764

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.76  E-value=3.2e-18  Score=179.68  Aligned_cols=133  Identities=20%  Similarity=0.245  Sum_probs=119.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      ..||+|+||.||++....++..||||.+........+.+.+|+..  .++|+||+++++.+...+..++||||+++++|.
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~  107 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALT  107 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHH
Confidence            568999999999999877889999999976655556678888877  489999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus       108 ~~~~~-~~l~~~~~~~~~~qi~~~l~-~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~  166 (292)
T cd06658         108 DIVTH-TRMNEEQIATVCLSVLRALS-YLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCA  166 (292)
T ss_pred             HHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchh
Confidence            99865 46899999999999999999 9999   899999999999    77899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.76  E-value=4.7e-18  Score=176.79  Aligned_cols=136  Identities=19%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||++....+|+.||+|.++... .....++..|+..   ..+|+|++++++++...+..+++|||++ |
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~   84 (283)
T cd06617           6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-T   84 (283)
T ss_pred             EEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-c
Confidence            467999999999999998789999999987642 2333455556554   3789999999999999999999999997 6


Q ss_pred             CHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++..    ...+++..++.++.|++.||+ |||+.  .+++||||||+|    +++.+||+|||+++.
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~  153 (283)
T cd06617          85 SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALE-YLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGY  153 (283)
T ss_pred             cHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHhhc--CCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            88887753    257899999999999999999 99982  279999999999    788999999999863

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.76  E-value=4.8e-18  Score=177.50  Aligned_cols=135  Identities=29%  Similarity=0.447  Sum_probs=117.6

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||++...     .++..||+|++.... ....++|.+|+..  .++|+||+++++++..+...++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   89 (288)
T cd05050          10 VRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEY   89 (288)
T ss_pred             cccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEec
Confidence            468999999999999864     246789999997653 3445678888887  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C
Q 038969          610 MAKGNLEEHLSGA----------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H  663 (678)
Q Consensus       610 ~~~GsL~~~L~~~----------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~  663 (678)
                      +++|+|.+++...                      ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~-~lH~---~~i~H~dl~p~nil~~~  165 (288)
T cd05050          90 MAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMA-YLSE---RKFVHRDLATRNCLVGE  165 (288)
T ss_pred             CCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHH-HHHh---CCeecccccHhheEecC
Confidence            9999999999632                      24789999999999999999 9999   899999999999    8


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      ++.+||+|||+++
T Consensus       166 ~~~~~l~dfg~~~  178 (288)
T cd05050         166 NMVVKIADFGLSR  178 (288)
T ss_pred             CCceEECccccce
Confidence            8899999999876

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.76  E-value=7.9e-18  Score=171.85  Aligned_cols=133  Identities=27%  Similarity=0.462  Sum_probs=118.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ++||+|++|.||++... +++.||+|.+...... ..++|.+|+.+  .++|+||+++++++......++||||+++++|
T Consensus         1 ~~lg~g~~g~v~~~~~~-~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLK-GNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEe-CCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            46899999999999987 4899999998765433 55678888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++..++.++.++++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~  141 (251)
T cd05041          80 LTFLRKKKNRLTVKKLLQMSLDAAAGME-YLES---KNCIHRDLAARNCLVGENNVLKISDFGMSR  141 (251)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEehhhcCcceEEEcCCCcEEEeeccccc
Confidence            9999653 56899999999999999999 9999   889999999999    78899999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.75  E-value=6.2e-18  Score=177.56  Aligned_cols=137  Identities=24%  Similarity=0.407  Sum_probs=117.0

Q ss_pred             hhhhcccCCceEEEEEEEc----------------cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE----------------FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYC  597 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~----------------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~  597 (678)
                      +.+.||+|+||.||++...                .++..||+|++.... .....+|.+|+..  .++|+||+++++++
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~   88 (296)
T cd05095           9 FKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVC   88 (296)
T ss_pred             eeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            3478999999999998532                123479999997643 3445678889887  48999999999999


Q ss_pred             EcCCeeEEEEecCCCCCHHHhhcCC-----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----
Q 038969          598 DEDTNMGLIYEFMAKGNLEEHLSGA-----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----  662 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~~GsL~~~L~~~-----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----  662 (678)
                      ...+..++||||+++|+|.+++...           ..+++.+++.++.|++.||+ |||+   .+++||||||+|    
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~-~lH~---~~i~H~dlkp~Nili~  164 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMK-YLSS---LNFVHRDLATRNCLVG  164 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHH-HHHH---CCeecccCChheEEEc
Confidence            9999999999999999999998653           24788999999999999999 9999   889999999999    


Q ss_pred             CCCcEEEEeeCCccc
Q 038969          663 HKNIVKLITFSIIKN  677 (678)
Q Consensus       663 ~~~~vkI~DFGlar~  677 (678)
                      +++.+||+|||+++.
T Consensus       165 ~~~~~~l~dfg~~~~  179 (296)
T cd05095         165 KNYTIKIADFGMSRN  179 (296)
T ss_pred             CCCCEEeccCccccc
Confidence            788999999999863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.75  E-value=7.6e-18  Score=173.03  Aligned_cols=134  Identities=25%  Similarity=0.449  Sum_probs=119.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||++... +++.||||.+.... ...+++.+|+..  .++|+|++++++++......++||||+++++
T Consensus        10 i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   87 (261)
T cd05034          10 LERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGS   87 (261)
T ss_pred             eeeeeccCcceEEEEEEEc-CCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCC
Confidence            3578999999999999976 67889999997643 234678888877  4899999999999998899999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.+++.++.|++.||+ |||+   .+++|+||||+|    +++.+||+|||+++
T Consensus        88 L~~~i~~~~~~~~~~~~~~~~~~~i~~al~-~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          88 LLDFLKSGEGKKLRLPQLVDMAAQIAEGMA-YLES---RNYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             HHHHHhccccCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCcchheEEEcCCCCEEECccccce
Confidence            99999764  47899999999999999999 9999   889999999999    88899999999876

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.75  E-value=1.4e-18  Score=185.37  Aligned_cols=136  Identities=15%  Similarity=0.211  Sum_probs=120.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe-eEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN-MGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~-~~LV~Ey~~~  612 (678)
                      .+++|+|+||.++..+.+.+++.+++|.+....  ....+....|+.+  +++|||||.+.+.+.+++. .+|||+|++|
T Consensus         9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eG   88 (426)
T KOG0589|consen    9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEG   88 (426)
T ss_pred             hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCC
Confidence            478999999999999998888999999997653  2334456777777  4999999999999988887 9999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+.+...  ..++++.+++++.|++.|+. |||+   .+|+|||||++|    .+..|||.|||+||.
T Consensus        89 g~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~-ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~  155 (426)
T KOG0589|consen   89 GDLAQLIKEQKGVLFPEERILKWFVQILLAVN-YLHE---NRVLHRDLKCANIFLTKDKKVKLGDFGLAKI  155 (426)
T ss_pred             CCHHHHHHHHhhccccHHHHHHHHHHHHHHHH-HHHh---hhhhcccchhhhhhccccCceeecchhhhhh
Confidence            9999999865  56899999999999999999 9998   899999999999    778889999999984

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.75  E-value=3.3e-18  Score=186.89  Aligned_cols=133  Identities=22%  Similarity=0.346  Sum_probs=115.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC-C-----CCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH-H-----KNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~-H-----~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .++||+|.||.|.+|.....++.||||+++.... -..+-..|+.++  ++ |     -|+|++++|+..+++.|||+|.
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfEL  269 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFEL  269 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehh
Confidence            4799999999999999988899999999987542 233445566652  33 3     4899999999999999999999


Q ss_pred             CCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar  676 (678)
                      +.. +|.++|+..  ..++...+..|+.||+.||. +||+   .+|||+||||+|      ....+||+|||.|.
T Consensus       270 L~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~-~L~~---l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc  339 (586)
T KOG0667|consen  270 LST-NLYELLKNNKFRGLSLPLVRKFAQQILTALL-FLHE---LGIIHCDLKPENILLKDPKRSRIKVIDFGSSC  339 (586)
T ss_pred             hhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeccCChhheeeccCCcCceeEEeccccc
Confidence            976 999999875  67999999999999999999 9998   899999999999      66799999999875

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.75  E-value=7e-18  Score=175.32  Aligned_cols=132  Identities=19%  Similarity=0.268  Sum_probs=116.1

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||++....+|+.+|+|.+....   ....+.+..|+.+  .++|+|++++++++...+..++||||+++|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            689999999999987789999999986532   2234456677766  48999999999999999999999999999999


Q ss_pred             HHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++....  .+++.+++.++.|+++||. |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~-~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~  143 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLE-HLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAV  143 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEECCCCCEEEccCcchh
Confidence            99997653  7999999999999999999 9999   899999999999    77899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.75  E-value=4.7e-18  Score=178.87  Aligned_cols=133  Identities=23%  Similarity=0.247  Sum_probs=119.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      ..||+|+||.||++....+++.||+|.+........+.+.+|+..  .++|+|++++++++..++..++|+||+++++|.
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~  106 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALT  106 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHH
Confidence            469999999999999877889999999976544455677888776  389999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus       107 ~~~~~-~~~~~~~~~~~~~qi~~~L~-~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~  165 (297)
T cd06659         107 DIVSQ-TRLNEEQIATVCESVLQALC-YLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCA  165 (297)
T ss_pred             HHHhh-cCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHeEEccCCcEEEeechhHh
Confidence            98865 56899999999999999999 9999   889999999999    78899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.75  E-value=7e-18  Score=174.83  Aligned_cols=134  Identities=24%  Similarity=0.398  Sum_probs=117.5

Q ss_pred             hhcccCCceEEEEEEEcc-----CCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          539 KVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.||+|+||.||+|+.+.     +.+.||+|.+...... ..++|..|+++  .++|+||+++++++.+....++||||+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   90 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYT   90 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEec
Confidence            679999999999998642     2357999998765433 45678888887  489999999999999989999999999


Q ss_pred             CCCCHHHhhcCCC---------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGAN---------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~---------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++....         .+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        91 ~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~-~LH~---~~i~H~dlkp~Nili~~~~~~~l~~~~~~~  165 (275)
T cd05046          91 DLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMD-HLSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSK  165 (275)
T ss_pred             CCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHH-Hhhh---cCcccCcCccceEEEeCCCcEEEccccccc
Confidence            9999999997543         6899999999999999999 9999   889999999999    88899999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.75  E-value=9.1e-18  Score=172.68  Aligned_cols=133  Identities=16%  Similarity=0.165  Sum_probs=119.2

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|++|.||+++....++.+|+|.+....   ....+.+..|+..  .++|+||+++++.+.++...++|+||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999997678999999997542   2334668888776  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++.....+++.++..++.|+++||+ |||+   .+++|+||+|+|    .++.+||+|||+++.
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~-~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~  142 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFE-YLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKK  142 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHH-HHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccc
Confidence            999987777999999999999999999 9999   899999999999    788999999999864

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.75  E-value=6.9e-18  Score=177.66  Aligned_cols=134  Identities=18%  Similarity=0.303  Sum_probs=116.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+++.||+|.+.... ......+.+|+..  .++|+||+++++++...+..++||||++ ++
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~   89 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   89 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cC
Confidence            367999999999999987778999999987543 2233456677777  4899999999999999999999999997 59


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        90 l~~~l~~~~~~~~~~~~~~~~~qi~~aL~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  152 (301)
T cd07873          90 LKQYLDDCGNSINMHNVKLFLFQLLRGLN-YCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (301)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchh
Confidence            99988754 56899999999999999999 9999   899999999999    77899999999886

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.75  E-value=7.5e-18  Score=175.57  Aligned_cols=134  Identities=25%  Similarity=0.418  Sum_probs=114.9

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~E  608 (678)
                      .+.||+|+||.||++..    ..+++.||+|.+.... ......|.+|++.  .++|+||+++++++...  ...++|||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (283)
T cd05080           9 IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIME   88 (283)
T ss_pred             ceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEec
Confidence            46899999999987653    2367789999997653 2345678888877  48999999999998653  45889999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        89 ~~~~~~l~~~~~~-~~l~~~~~~~i~~~l~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  155 (283)
T cd05080          89 YVPLGSLRDYLPK-HKLNLAQLLLFAQQICEGMA-YLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAK  155 (283)
T ss_pred             CCCCCCHHHHHHH-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccccChheEEEcCCCcEEEeeccccc
Confidence            9999999999976 46999999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.75  E-value=1.1e-17  Score=171.47  Aligned_cols=135  Identities=18%  Similarity=0.213  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .++||+|+||.||.++...+++.+++|.+...  +....+++.+|+..  .++|+||+++++++.+.+..+++|||+++|
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (256)
T cd08221           5 IRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGG   84 (256)
T ss_pred             eeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCC
Confidence            46899999999999998878999999998654  33445678888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.++..++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~  149 (256)
T cd08221          85 TLYDKIVRQKGQLFEEEMVLWYLFQIVSAVS-YIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISK  149 (256)
T ss_pred             cHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HHHh---CCccccCCChHhEEEeCCCCEEECcCcceE
Confidence            999999764  56899999999999999999 9999   789999999999    78889999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.75  E-value=8.2e-18  Score=172.91  Aligned_cols=133  Identities=24%  Similarity=0.403  Sum_probs=115.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... ++..+|+|.++.... ..+.|.+|+..  .++|+|++++++++. ....+++|||+++|+
T Consensus        10 ~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~   86 (260)
T cd05070          10 LIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGS   86 (260)
T ss_pred             hhheeccccCceEEEEEec-CCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCCc
Confidence            3578999999999999876 777899999976433 34568888877  489999999999875 456899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          87 LLDFLKDGEGRALKLPNLVDMAAQVAAGMA-YIER---MNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCccceEEEeCCceEEeCCceeee
Confidence            99999753  46899999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.75  E-value=5.7e-19  Score=175.35  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=115.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--h-cCCCCcccEEEEEE----cCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--I-VHHKNLTTLVGYCD----EDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~----~~~~~~LV~Ey~~  611 (678)
                      ++||-|-.|.|..+..+..++.+|+|++....     ..++|++.  + -.|+|||++++++.    ....+.+|||.|+
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~-----KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~me  142 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLDSP-----KARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECME  142 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhcCH-----HHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeeccc
Confidence            78999999999999999899999999997542     34667776  3 56999999999884    3566889999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      ||.|.+.+.++  ..+++.++-.|+.||+.|+. |||+   ..|.||||||+|       .+..+||+|||+||+
T Consensus       143 GGeLfsriq~~g~~afTErea~eI~~qI~~Av~-~lH~---~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~  213 (400)
T KOG0604|consen  143 GGELFSRIQDRGDQAFTEREASEIMKQIGLAVR-YLHS---MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKE  213 (400)
T ss_pred             chHHHHHHHHcccccchHHHHHHHHHHHHHHHH-HHHh---cchhhccCChhheeeecCCCCcceEecccccccc
Confidence            99999999866  56999999999999999999 9999   899999999999       778899999999996

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.75  E-value=1e-17  Score=173.01  Aligned_cols=135  Identities=21%  Similarity=0.356  Sum_probs=117.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-----hhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~E  608 (678)
                      .+.||+|+||.||++.....++.||+|.+....     ......+.+|+.+  .++|+||+++++++..  ....++++|
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e   86 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFME   86 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEe
Confidence            378999999999999987778999999986431     2234567788777  4899999999998865  356889999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++++|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        87 ~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~-~LH~---~~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          87 YMPGGSVKDQLKAYGALTESVTRKYTRQILEGMS-YLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            9999999999987677999999999999999999 9998   889999999999    77789999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.75  E-value=6.8e-18  Score=174.53  Aligned_cols=135  Identities=20%  Similarity=0.301  Sum_probs=116.1

Q ss_pred             hhhhcccCCceEEEEEEEccC---CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|.....   ...||||...... ....+.|.+|+..  .++|+||+++++++.. ...++||||+
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~   88 (270)
T cd05056          10 LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELA   88 (270)
T ss_pred             eeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcC
Confidence            457899999999999987522   2469999987654 4456678888887  3899999999999875 5578999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+++||||||+|    ..+.+||+|||+++
T Consensus        89 ~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~  155 (270)
T cd05056          89 PLGELRSYLQVNKYSLDLASLILYSYQLSTALA-YLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSR  155 (270)
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccChheEEEecCCCeEEccCceee
Confidence            999999999764 46899999999999999999 9999   899999999999    77899999999886

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.75  E-value=8.2e-18  Score=176.92  Aligned_cols=133  Identities=17%  Similarity=0.252  Sum_probs=120.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||.|++|.||+|....+|+.||+|.+........+.+.+|+..  .++|+|++++++++......++|+||+++|+|.
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  104 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLT  104 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHH
Confidence            679999999999999877899999999976555556678888777  489999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.+++.++.|+++||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus       105 ~~~~~-~~l~~~~~~~i~~~l~~al~-~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~  163 (296)
T cd06655         105 DVVTE-TCMDEAQIAAVCRECLQALE-FLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCA  163 (296)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEccCccch
Confidence            99875 46899999999999999999 9999   899999999999    78899999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.75  E-value=1.4e-17  Score=170.59  Aligned_cols=135  Identities=16%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++....+++.+|+|.++.. .....+.+..|+..  .++|+||+++++.+..++..+++|||+++|+
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   84 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGD   84 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCc
Confidence            47899999999999999878899999998653 23345667777766  4899999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++..++.++.|+++||. |||+   .+|+|+||||+|    +++.++|+|||+++
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~i~~al~-~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  148 (255)
T cd08219          85 LMQKIKLQRGKLFPEDTILQWFVQMCLGVQ-HIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSAR  148 (255)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHhh---CCcccCCCCcceEEECCCCcEEEcccCcce
Confidence            99998643  56899999999999999999 9999   899999999999    78899999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.75  E-value=9.9e-18  Score=172.24  Aligned_cols=135  Identities=22%  Similarity=0.286  Sum_probs=121.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+++.||+|.++....  ...+++..|+..  .++|+||+++++.+...+..++|+||++++
T Consensus         5 ~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGG   84 (264)
T ss_pred             eeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCC
Confidence            3679999999999999877889999999976543  356778888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++..+..|+.|+++||+ |||+   .+|+|+||+|+|    +.+.+||+|||+++
T Consensus        85 ~L~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~  147 (264)
T cd06626          85 TLEELLEHGRILDEHVIRVYTLQLLEGLA-YLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAV  147 (264)
T ss_pred             cHHHHHhhcCCCChHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEccccccc
Confidence            99999987667899999999999999999 9999   899999999999    78889999999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.75  E-value=1.2e-17  Score=171.80  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=119.9

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.+.||+|++|.||+|....+|+.||+|.++..   .....+.+.+|++.  .++|+|++++++++...+..++||||++
T Consensus         6 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (267)
T cd08224           6 IEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELAD   85 (267)
T ss_pred             eeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCC
Confidence            357899999999999999878999999988642   22335678888877  4899999999999999999999999999


Q ss_pred             CCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++..    ...+++.+++.++.|+++||. |||+   .+|+||||+|+|    .++.+||+|||+++
T Consensus        86 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~~~~  154 (267)
T cd08224          86 AGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE-HMHS---KRIMHRDIKPANVFITATGVVKLGDLGLGR  154 (267)
T ss_pred             CCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHH-HHHh---CCEecCCcChhhEEECCCCcEEEeccceee
Confidence            9999999853    256899999999999999999 9999   899999999999    78899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.75  E-value=3.9e-18  Score=177.64  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|.....++.||+|++.....  ...+.+.+|+..  .++|+||+++++++..++..++||||++++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   85 (286)
T cd07846           6 LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHT   85 (286)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCcc
Confidence            3789999999999999876789999999865422  234567788777  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .|.++......++|.+++.++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~  148 (286)
T cd07846          86 VLDDLEKYPNGLDESRVRKYLFQILRGIE-FCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFAR  148 (286)
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEECCCCcEEEEeeeeee
Confidence            99988776567999999999999999999 9999   899999999999    88899999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.75  E-value=9.4e-18  Score=174.47  Aligned_cols=136  Identities=19%  Similarity=0.281  Sum_probs=117.1

Q ss_pred             hhhhcccCCceEEEEEEEcc----CCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEF----NGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~----~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|....    .+..||+|.+... .....+.+.+|+..  .++|+|++++++++.. ....++++|
T Consensus        10 ~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~   89 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYP   89 (280)
T ss_pred             EeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEE
Confidence            35789999999999999863    1578999998754 33345667788776  4899999999999866 567899999


Q ss_pred             cCCCCCHHHhhcCC--------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA--------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~--------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++...        ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~---~~i~H~di~p~nil~~~~~~~kl~d~g~~~  165 (280)
T cd05043          90 YMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMS-YLHK---RGVIHKDIAARNCVIDEELQVKITDNALSR  165 (280)
T ss_pred             cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccCHhhEEEcCCCcEEECCCCCcc
Confidence            99999999999643        45899999999999999999 9999   899999999999    78899999999987

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.75  E-value=1.7e-17  Score=172.40  Aligned_cols=134  Identities=22%  Similarity=0.290  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||+|.+.... ....+.|.+|+..  .++|+||+++++++..+...++||||+++|+
T Consensus         9 ~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06641           9 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGS   88 (277)
T ss_pred             heeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCc
Confidence            467999999999999987688999999986543 2344667788777  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.. ..+++..+..++.|++.||. |||+   .+++|+||+|+|    .++.++|+|||+++
T Consensus        89 l~~~i~~-~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06641          89 ALDLLEP-GPLDETQIATILREILKGLD-YLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAG  149 (277)
T ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHcc---CCeecCCCCHHhEEECCCCCEEEeecccce
Confidence            9999875 56899999999999999999 9999   899999999999    77889999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.75  E-value=9.9e-18  Score=171.90  Aligned_cols=133  Identities=26%  Similarity=0.437  Sum_probs=115.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEE-cCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCD-EDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~-~~~~~~LV~Ey~~~G  613 (678)
                      +.+.||+|+||.||++..  .|..||+|.++...  ..+.|.+|+..  .++|+|++++++++. .++..++||||+++|
T Consensus        10 ~~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~   85 (256)
T cd05082          10 LLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   85 (256)
T ss_pred             eeeeecccCCCeEEEEEE--cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCC
Confidence            347899999999999976  58889999987543  24567888877  489999999999764 456789999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++...  ..+++..+++++.|++.||+ |||+   .+++||||||+|    +++.+||+|||+++.
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          86 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAME-YLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeccccchheEEEcCCCcEEecCCcccee
Confidence            999999754  35899999999999999999 9999   899999999999    888999999999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.75  E-value=7.4e-18  Score=176.38  Aligned_cols=147  Identities=24%  Similarity=0.336  Sum_probs=121.3

Q ss_pred             ccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEc
Q 038969          525 FSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDE  599 (678)
Q Consensus       525 fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~  599 (678)
                      +++.++.+++++|.  +.||+|+||.||++....+++.+|+|.+..... ...++.+|+..  .+ +|+|++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            44555555566654  689999999999999987889999999865422 23455666655  24 89999999999865


Q ss_pred             C-----CeeEEEEecCCCCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          600 D-----TNMGLIYEFMAKGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       600 ~-----~~~~LV~Ey~~~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      .     ...++||||+++|+|.++++.    ...+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~dlkp~nili~~~~~  166 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQ-HLHN---NRIIHRDVKGNNILLTTEGG  166 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHEEEcCCCC
Confidence            3     358999999999999998863    357899999999999999999 9999   899999999999    7788


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+++
T Consensus       167 ~kl~dfg~~~  176 (291)
T cd06639         167 VKLVDFGVSA  176 (291)
T ss_pred             EEEeecccch
Confidence            9999999876

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.75  E-value=9.6e-18  Score=174.61  Aligned_cols=134  Identities=22%  Similarity=0.303  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|+...+++.||+|.++...  ....+.+.+|+..  .++|+||+++++++..++..++||||++ |
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~   83 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-M   83 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-C
Confidence            367999999999999987788999999986542  2234567778777  4899999999999999999999999997 6


Q ss_pred             CHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...   ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  149 (285)
T cd07861          84 DLKKYLDSLPKGQYMDAELVKSYLYQILQGIL-FCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR  149 (285)
T ss_pred             CHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHH-HHHh---CCeeecCCCHHHEEEcCCCcEEECccccee
Confidence            899888642   56899999999999999999 9999   899999999999    88899999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.1e-18  Score=186.67  Aligned_cols=133  Identities=20%  Similarity=0.318  Sum_probs=121.0

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHH
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEE  617 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~  617 (678)
                      +||+|.||+||.|++..+...+|||-+.....+..+-...|+..  .++|+|||+++|.|.+.+..-|.||-+|||+|.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            79999999999999986667899999988776666777888877  5999999999999999999999999999999999


Q ss_pred             hhcCC-CCC--CHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          618 HLSGA-NTL--TWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       618 ~L~~~-~~l--~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      .|+.+ .++  .+..+-.+.+||++||. |||+   ..|||||||-.|     -.+.+||+|||-+|
T Consensus       662 LLrskWGPlKDNEstm~fYtkQILeGLk-YLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsK  724 (1226)
T KOG4279|consen  662 LLRSKWGPLKDNESTMNFYTKQILEGLK-YLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSK  724 (1226)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHhh-hhhh---cceeeccccCCcEEEeeccceEEecccccch
Confidence            99876 666  78889999999999999 9999   889999999999     67899999999776

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.75  E-value=2.2e-17  Score=171.66  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=119.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|.....+..||+|.+.... ....+.+..|+..  .+.|+||+++++++.+....++||||+++|+|
T Consensus        10 ~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (277)
T cd06640          10 ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSA   89 (277)
T ss_pred             hhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcH
Confidence            67999999999999987678999999987543 3445678888877  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ..+++.+...++.|+++||+ |||+   .+++|+||+|+|    .++.++|+|||+++
T Consensus        90 ~~~i~~-~~l~~~~~~~~~~~l~~~l~-~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~  149 (277)
T cd06640          90 LDLLRA-GPFDEFQIATMLKEILKGLD-YLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             HHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCccCcCCChhhEEEcCCCCEEEcccccce
Confidence            999975 56899999999999999999 9999   899999999999    77889999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.3e-18  Score=170.59  Aligned_cols=136  Identities=18%  Similarity=0.290  Sum_probs=119.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc----hhh----HHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS----VQG----YKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~----~~~----~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .++||+|..+.|.++..+..|++.|+|++....    ...    .++-..|+.++   .-||+|+++.+.++....+++|
T Consensus        22 keilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlV  101 (411)
T KOG0599|consen   22 KEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFLV  101 (411)
T ss_pred             HHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhh
Confidence            368999999999999998899999999996431    111    22345566663   6799999999999999999999


Q ss_pred             EecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          607 YEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.|+.|.|.+||.....+++.+..+|++|+.+|++ |||.   ..||||||||+|    ++.++||+|||+|..
T Consensus       102 Fdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVe-ylHa---~~IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen  102 FDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVE-YLHA---RNIVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             hhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHH-HHHH---hhhhhcccChhheeeccccceEEeccceeec
Confidence            999999999999999889999999999999999999 9999   899999999999    889999999999863

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.75  E-value=1.7e-17  Score=171.75  Aligned_cols=129  Identities=15%  Similarity=0.181  Sum_probs=111.3

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH-hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhh
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY-IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL  619 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~-~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L  619 (678)
                      ||+|+||.||++..+.++..+|+|.+......   +.+.++.. +.+|+|++++++++...+..++||||+++|+|.+++
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l  100 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN---AIEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLL  100 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcc---hhhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHH
Confidence            59999999999998878899999998754221   11222222 347999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-cEEEEeeCCcc
Q 038969          620 SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-IVKLITFSIIK  676 (678)
Q Consensus       620 ~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-~vkI~DFGlar  676 (678)
                      .....+++.+++.++.|+++||+ |||+   .+++||||||+|    .++ .++|+|||+++
T Consensus       101 ~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390        101 KKEGKLSEAEVKKIIRQLVEALN-DLHK---HNIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence            87678999999999999999999 9999   889999999999    555 89999999876

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.75  E-value=9.2e-18  Score=172.67  Aligned_cols=133  Identities=25%  Similarity=0.390  Sum_probs=116.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||++... ++..+|+|.+.... ...+.|.+|+..  .++|+|++++++++.. ...+++|||+++|+
T Consensus        10 ~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~   86 (260)
T cd05073          10 LEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGS   86 (260)
T ss_pred             EEeEecCccceEEEEEEec-CCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCc
Confidence            4578999999999999876 67789999887543 234678888776  4899999999999877 77899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.+++.++.|++.||+ |||+   .+++||||||+|    ..+.+||+|||+++
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~-~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          87 LLDFLKSDEGSKQPLPKLIDFSAQIAEGMA-FIEQ---RNYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             HHHHHHhCCccccCHHHHHHHHHHHHHHHH-HHHh---CCccccccCcceEEEcCCCcEEECCCccee
Confidence            99999753  56899999999999999999 9999   889999999999    88899999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.74  E-value=1.1e-17  Score=176.50  Aligned_cols=133  Identities=25%  Similarity=0.442  Sum_probs=113.8

Q ss_pred             hhcccCCceEEEEEEEccCCE----EEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGT----QVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.||+|+||.||+|....+|.    .||+|.+..... ....++.+|+..  .++|+||++++|+|... ..++++||++
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~~~   91 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQLMP   91 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-CceeeehhcC
Confidence            679999999999998765554    579998876532 334467788776  48999999999998754 4679999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        92 ~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~-~LH~---~~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          92 HGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMM-YLEE---RRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHhh---cCeeccccccceeeecCCCceEEccccccc
Confidence            99999999764 46899999999999999999 9999   899999999999    77889999999986

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.74  E-value=1.7e-17  Score=169.61  Aligned_cols=133  Identities=17%  Similarity=0.283  Sum_probs=120.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||+|....+++.+|+|.++....  .+++.+|+..  .++|+|++++++++......++++||+++++|
T Consensus         8 ~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L   85 (256)
T cd06612           8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSV   85 (256)
T ss_pred             hhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcH
Confidence            4689999999999999986689999999976532  6788888887  48999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ...+++..+..++.|+++||. |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        86 ~~~l~~~~~~l~~~~~~~~~~~l~~~l~-~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          86 SDIMKITNKTLTEEEIAAILYQTLKGLE-YLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             HHHHHhCccCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCcceEEECCCCcEEEcccccch
Confidence            999975 367899999999999999999 9999   889999999999    78889999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.74  E-value=1.2e-17  Score=171.79  Aligned_cols=133  Identities=23%  Similarity=0.380  Sum_probs=114.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|++|.||++... .+..+|+|.+.... ...+.|.+|+..  .++|+|++++++++. .+..+++|||+++|+
T Consensus        10 ~~~~ig~g~~~~v~~~~~~-~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~   86 (260)
T cd05069          10 LDVKLGQGCFGEVWMGTWN-GTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGS   86 (260)
T ss_pred             eeeeecCcCCCeEEEEEEc-CCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCC
Confidence            3468999999999999886 55679999887543 234567888777  489999999999875 456899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.++++..  ..+++..++.++.|++.||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          87 LLDFLKEGDGKYLKLPQLVDMAAQIADGMA-YIER---MNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeecccCcceEEEcCCCeEEECCCccce
Confidence            99999753  45899999999999999999 9999   889999999999    78889999999986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.74  E-value=1.1e-17  Score=180.89  Aligned_cols=133  Identities=23%  Similarity=0.294  Sum_probs=112.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~LV~  607 (678)
                      .+.||+|+||.||++.....|+.||||.+...  ......++.+|+..  .++|+||+++++++....      ..++||
T Consensus        26 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  105 (359)
T cd07876          26 LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM  105 (359)
T ss_pred             EEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEE
Confidence            37899999999999998878999999999653  22345567788777  489999999999986433      479999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++ +|.+.+.  ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       106 e~~~~-~l~~~~~--~~~~~~~~~~~~~qi~~~L~-~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~  172 (359)
T cd07876         106 ELMDA-NLCQVIH--MELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  172 (359)
T ss_pred             eCCCc-CHHHHHh--ccCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEECCCCCEEEecCCCccc
Confidence            99975 6777765  35889999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=1.8e-17  Score=171.78  Aligned_cols=135  Identities=21%  Similarity=0.265  Sum_probs=121.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||.|++|.||+|+...+++.||+|.+.... .....++.+|+..  .++|+|++++++++.+....++|+||+++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (274)
T cd06609           6 LECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGS   85 (274)
T ss_pred             hhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCc
Confidence            467999999999999988789999999987653 3345678888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++... .+++.++..++.|++.||. |||+   .+++||||+|+|    +++.++|+|||+++.
T Consensus        86 L~~~~~~~-~~~~~~~~~~~~ql~~~l~-~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  147 (274)
T cd06609          86 CLDLLKPG-KLDETYIAFILREVLLGLE-YLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQ  147 (274)
T ss_pred             HHHHHhhc-CCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEECCCCCEEEccccccee
Confidence            99999864 7899999999999999999 9999   899999999999    788999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=1.5e-17  Score=171.50  Aligned_cols=136  Identities=23%  Similarity=0.378  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-----chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-----SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-----~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....+++.||+|.+...     ..+..+.+.+|+..  .++|+||+++++++...  ...++++|
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVE   86 (264)
T ss_pred             eeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEE
Confidence            47899999999999998878999999987532     22344678888877  48999999999998653  45889999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+++++|.+++.....+++..+++++.|++.||. |||+   .+++|+||||+|    .++.+||+|||+++.
T Consensus        87 ~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~-~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          87 YMPGGSIKDQLKAYGALTENVTRRYTRQILQGVS-YLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             eCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEEcCCCCEEECccccccc
Confidence            9999999999987667899999999999999999 9999   889999999999    778899999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=1.7e-17  Score=172.05  Aligned_cols=134  Identities=19%  Similarity=0.288  Sum_probs=118.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcC---CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVH---HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~---H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....+++.||+|.+... ......++.+|+..  .++   |+|++++++++..+...++||||++
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAE   85 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCC
Confidence            36799999999999998778999999998754 23345667788766  354   9999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|.+++.. ..+++...+.++.|+++||. |||+   .+|+||||+|+|    +.+.++|+|||+++
T Consensus        86 ~~~L~~~~~~-~~l~~~~~~~i~~~i~~~l~-~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06917          86 GGSVRTLMKA-GPIAEKYISVIIREVLVALK-YIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVAA  149 (277)
T ss_pred             CCcHHHHHHc-cCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCcCHHHEEEcCCCCEEEccCCcee
Confidence            9999999876 47899999999999999999 9999   899999999999    78899999999875

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.74  E-value=5.5e-18  Score=173.89  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||+|.+....   ....+.+.+|++.  .++||||+++++++......++|+||+++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   84 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLG   84 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCC
Confidence            478999999999999987778999999997542   2345678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|.+++.....+++.++..++.|+++||. |||+   .+++|+||+|+|    +++.+||+|||++.
T Consensus        85 ~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~-~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~  148 (258)
T cd05578          85 GDLRYHLSQKVKFSEEQVKFWICEIVLALE-YLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIAT  148 (258)
T ss_pred             CCHHHHHHhcCCcCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHeEEcCCCCEEEeeccccc
Confidence            999999987678999999999999999999 9999   889999999999    88899999999875

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.74  E-value=1.2e-17  Score=179.37  Aligned_cols=133  Identities=17%  Similarity=0.253  Sum_probs=113.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~E  608 (678)
                      +.||+|+||.||+|....+++.||||.+....  ....+.+.+|+..  .++|+||+++++++...      ...++++|
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~  100 (343)
T cd07878          21 TPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTN  100 (343)
T ss_pred             eecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEee
Confidence            68999999999999987788899999987542  2234567778777  48999999999987532      45789999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++ +++|.+++.. ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       101 ~~-~~~l~~~~~~-~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878         101 LM-GADLNNIVKC-QKLSDEHVQFLIYQLLRGLK-YIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             cC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeecccCChhhEEECCCCCEEEcCCcccee
Confidence            98 7799988764 56999999999999999999 9999   899999999999    788999999999874

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.74  E-value=9e-18  Score=181.58  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=111.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+....++.||+|......      ...|+.+  .++|+||+++++++......++|+||+. |+|
T Consensus        71 ~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~------~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l  143 (357)
T PHA03209         71 IKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT------TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDL  143 (357)
T ss_pred             EEEecCCCCeEEEEEEECCCCceEEEEeCCccc------cHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcH
Confidence            478999999999999998777899999854332      2335544  5899999999999999999999999995 689


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.++++|+.|+++||+ |||+   .+||||||||+|    ..+.+||+|||+++
T Consensus       144 ~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        144 YTYLTKRSRPLPIDQALIIEKQILEGLR-YLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEEecCcccc
Confidence            9988653 67999999999999999999 9999   899999999999    78889999999986

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.74  E-value=1.2e-17  Score=174.68  Aligned_cols=134  Identities=18%  Similarity=0.300  Sum_probs=116.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|++|.||+|..+.+++.||+|.+...... ....+.+|+..  .++|+||+++++++...+..++||||+++ +
T Consensus        10 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~   88 (291)
T cd07844          10 LDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-D   88 (291)
T ss_pred             EEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCC-C
Confidence            36899999999999998878899999998754322 23446677776  48999999999999999999999999984 9


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.....++.|+++||. |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~~ql~~al~-~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  151 (291)
T cd07844          89 LKQYMDDCGGGLSMHNVRLFLFQLLRGLA-YCHQ---RRVLHRDLKPQNLLISERGELKLADFGLAR  151 (291)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecccCCHHHEEEcCCCCEEECcccccc
Confidence            99998754 56899999999999999999 9999   899999999999    77889999999876

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.74  E-value=1.3e-17  Score=185.16  Aligned_cols=131  Identities=19%  Similarity=0.297  Sum_probs=106.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--------~~~~LV~  607 (678)
                      .+.||+|+||.||+|.....++.||||.+.....    ...+|+.+  .++|+||+++++++...        ...++||
T Consensus        71 ~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvm  146 (440)
T PTZ00036         71 GNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQ----YKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVM  146 (440)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEE
Confidence            4789999999999999877889999998865322    22346655  48999999999886431        2467999


Q ss_pred             ecCCCCCHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLS----GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ||+++ +|.+++.    ....+++..+..++.|+++||+ |||+   .+|+||||||+|     ....+||+|||+|+.
T Consensus       147 E~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~-yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~  220 (440)
T PTZ00036        147 EFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALA-YIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKN  220 (440)
T ss_pred             ecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCcCHHHEEEcCCCCceeeeccccchh
Confidence            99985 7777664    3367999999999999999999 9999   899999999999     334799999999973

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.74  E-value=1.7e-17  Score=172.76  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=119.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|....+|+.||+|.+....  ....+.+.+|+..  .++|+|++++++++..+...++||||+ ++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~   83 (286)
T cd07832           5 LGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PS   83 (286)
T ss_pred             EeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CC
Confidence            467999999999999987789999999997653  2334678888877  488999999999999999999999999 99


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.+++.++.|+++||+ |||+   .+++|+||||+|    +.+.+||+|||+++
T Consensus        84 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~  147 (286)
T cd07832          84 DLSEVLRDEERPLPEAQVKSYMRMLLKGVA-YMHA---NGIMHRDLKPANLLISADGVLKIADFGLAR  147 (286)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeecc
Confidence            999998653 67999999999999999999 9999   899999999999    78889999999876

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.74  E-value=1.1e-17  Score=172.55  Aligned_cols=133  Identities=30%  Similarity=0.432  Sum_probs=113.9

Q ss_pred             hcccCCceEEEEEEEccC------CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          540 VIGKGGFGTVYHGYLEFN------GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~------g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .||+|+||.||+|+....      ++.+|+|.+.... .....+|.+|+..  .++|+||+++++++......++||||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence            689999999999987532      2679999986543 2345678888887  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-----cEEEEeeCC
Q 038969          611 AKGNLEEHLSGA-------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-----IVKLITFSI  674 (678)
Q Consensus       611 ~~GsL~~~L~~~-------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-----~vkI~DFGl  674 (678)
                      ++|+|.+++...       ..+++.+++.++.|+++||+ |||+   .+++|+||||+|    .+.     .+||+|||+
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          82 EGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV-YLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             CCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            999999999642       34889999999999999999 9998   889999999999    444     799999999


Q ss_pred             cc
Q 038969          675 IK  676 (678)
Q Consensus       675 ar  676 (678)
                      ++
T Consensus       158 ~~  159 (269)
T cd05044         158 AR  159 (269)
T ss_pred             cc
Confidence            86

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.74  E-value=2.2e-17  Score=169.06  Aligned_cols=134  Identities=25%  Similarity=0.489  Sum_probs=118.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||++... ++..+|+|.+..... ...+|.+|++.  .++|+|++++++++......++||||+++|+
T Consensus         8 ~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (256)
T cd05112           8 LVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGC   85 (256)
T ss_pred             EEeeecCcccceEEEEEEe-CCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCc
Confidence            3578999999999999886 678899999875432 34568888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..++.++.|++.||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  148 (256)
T cd05112          86 LSDYLRAQRGKFSQETLLGMCLDVCEGMA-YLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTR  148 (256)
T ss_pred             HHHHHHhCccCCCHHHHHHHHHHHHHHHH-HHHH---CCccccccccceEEEcCCCeEEECCCccee
Confidence            99999764 56899999999999999999 9999   889999999999    77889999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.74  E-value=7.7e-19  Score=173.98  Aligned_cols=133  Identities=14%  Similarity=0.280  Sum_probs=121.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|.||.||++.++..|+.||||.+.-.+  ..++..+|+.++  ++.+++|+++|.+.....+|||||||-.|+.
T Consensus        38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSi  115 (502)
T KOG0574|consen   38 VGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSI  115 (502)
T ss_pred             HHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcH
Confidence            368999999999999998899999999987653  467888898885  8899999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+.++-+ ++|++.++..+.++.++||+ |||.   ..-||||||+.|    -++++||+|||.|.
T Consensus       116 SDI~R~R~K~L~E~EIs~iL~~TLKGL~-YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAG  177 (502)
T KOG0574|consen  116 SDIMRARRKPLSEQEISAVLRDTLKGLQ-YLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAG  177 (502)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhHHH-HHHH---HHHHHhhcccccEEEcccchhhhhhccccc
Confidence            9999854 89999999999999999999 9999   778999999999    88999999999875

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=2.4e-17  Score=174.77  Aligned_cols=135  Identities=22%  Similarity=0.260  Sum_probs=119.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|++|.||++....+++.||+|.+.....   ...+.+..|++.  .++|+||+++++.+......++||||+++
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPG   85 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCC
Confidence            3679999999999999986789999999976532   244567777776  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|.+++...  ..+++..+..++.|+++||+ |||.   .+++||||||+|    .++.+||+|||+++
T Consensus        86 ~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  151 (316)
T cd05574          86 GELFRLLQRQPGKCLSEEVARFYAAEVLLALE-YLHL---LGIVYRDLKPENILLHESGHIMLSDFDLSK  151 (316)
T ss_pred             CCHHHHHHhCCCCccCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCChHHeEEcCCCCEEEeecchhh
Confidence            9999999754  57899999999999999999 9999   899999999999    78899999999876

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.73  E-value=1.5e-17  Score=174.70  Aligned_cols=134  Identities=19%  Similarity=0.247  Sum_probs=119.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||++....+++.||+|.+........+.+..|+..  .++|||++++++++...+..++|+||+++|+|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L  103 (293)
T cd06647          24 FEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSL  103 (293)
T ss_pred             eeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcH
Confidence            3679999999999999876788999999876544455678888776  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ..+++.++..++.|+++||. |||+   .+++||||||+|    .++.+||+|||+++
T Consensus       104 ~~~~~~-~~l~~~~~~~i~~~l~~al~-~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647         104 TDVVTE-TCMDEGQIAAVCRECLQALE-FLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             HHHHhh-cCCCHHHHHHHHHHHHHHHH-HHHh---CCEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            999975 46899999999999999999 9999   899999999999    77889999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.73  E-value=7.8e-18  Score=165.28  Aligned_cols=131  Identities=16%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh--h-------HHHH-----------------HHHHHH--hcCCCCc
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--G-------YKQF-----------------QAEVQY--IVHHKNL  590 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~-------~~~f-----------------~~Ev~~--~l~H~NI  590 (678)
                      ..||+|+||.||+|... +|+.||||+++.....  .       ...|                 ..|+..  .+.|+++
T Consensus         3 ~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           3 GCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            57999999999999987 8999999999754211  1       1112                 235554  3666665


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhH-hcCCCCCccccCCCCCC---CCCc
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAF-DQGCCPHICESSSSSNP---HKNI  666 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yL-H~~~~~~iiHrDlk~~N---~~~~  666 (678)
                      .....+..  ...+|||||++++++...+.....+++.+.++++.|++++|+ ++ |+   .+|+||||||+|   +++.
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~-~l~H~---~giiHrDlkP~NIli~~~~  155 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMR-ILYQD---CRLVHADLSEYNLLYHDGK  155 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHH-HHHHh---CCcccCCCCHHHEEEECCc
Confidence            43332222  224899999999887655433467899999999999999999 98 67   789999999999   6688


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      ++|+|||+|.
T Consensus       156 v~LiDFG~a~  165 (190)
T cd05147         156 LYIIDVSQSV  165 (190)
T ss_pred             EEEEEccccc
Confidence            9999999987

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.73  E-value=2.2e-17  Score=172.71  Aligned_cols=134  Identities=19%  Similarity=0.261  Sum_probs=115.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+|+.||+|++...... ....+.+|+..  .++|+||+++++++..+...++||||+. ++
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~   88 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TD   88 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CC
Confidence            36899999999999998778999999998754322 23456677766  4899999999999999999999999996 68


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        89 l~~~~~~~~~~~~~~~~~~~~~qi~~~L~-~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  151 (291)
T cd07870          89 LAQYMIQHPGGLHPYNVRLFMFQLLRGLA-YIHG---QHILHRDLKPQNLLISYLGELKLADFGLAR  151 (291)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChHHEEEcCCCcEEEecccccc
Confidence            87777543 56889999999999999999 9999   889999999999    78899999999886

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.73  E-value=3.3e-17  Score=171.28  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=120.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|++|.||++....+++.+|+|.+........+.+.+|+.+  .++|+||+++++++...+..++++||+++++|.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~  104 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALT  104 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHH
Confidence            589999999999999876889999999876555555667888776  489999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.++..++.|++.||+ |||+   .+|+||||+|+|    .++.+||+|||+++
T Consensus       105 ~~~~~-~~~~~~~~~~~~~ql~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~  163 (285)
T cd06648         105 DIVTH-TRMNEEQIATVCLAVLKALS-FLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCA  163 (285)
T ss_pred             HHHHh-CCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCChhhEEEcCCCcEEEcccccch
Confidence            99987 67899999999999999999 9999   899999999999    78899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.73  E-value=1.7e-17  Score=173.08  Aligned_cols=134  Identities=22%  Similarity=0.299  Sum_probs=111.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--h---cCCCCcccEEEEEEc-----CCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--I---VHHKNLTTLVGYCDE-----DTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~---l~H~NIv~l~g~~~~-----~~~~~L  605 (678)
                      .+.||+|+||.||+|....+|+.||+|.++....  .....+.+|+..  .   ++|+||+++++++..     ....++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l   84 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTL   84 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence            3679999999999999987899999999875321  112344455544  2   479999999998854     345899


Q ss_pred             EEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||++ ++|.+++...  ..+++.++..++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        85 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg~~~  156 (288)
T cd07863          85 VFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLD-FLHA---NCIVHRDLKPENILVTSGGQVKLADFGLAR  156 (288)
T ss_pred             EEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCEEECccCccc
Confidence            999998 4899998753  45899999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.73  E-value=1.7e-17  Score=179.08  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=112.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~  607 (678)
                      .+.||+|+||.||++.....++.||||.+...  .....+.+.+|+..  .++|+||+++++++...      ...++||
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  101 (355)
T cd07874          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM  101 (355)
T ss_pred             EEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEh
Confidence            36899999999999998777899999999753  22334567777776  48999999999988543      3579999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++ +|.+.+..  .+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       102 e~~~~-~l~~~~~~--~l~~~~~~~~~~qi~~aL~-~LH~---~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874         102 ELMDA-NLCQVIQM--ELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             hhhcc-cHHHHHhh--cCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence            99975 77777753  5899999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.73  E-value=2.9e-17  Score=168.21  Aligned_cols=136  Identities=21%  Similarity=0.295  Sum_probs=117.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~LV~Ey~~  611 (678)
                      +.+.||+|++|.||++....+++.||+|.+....  ....+.+..|+..  .++|+|++++++.+.. ....+++|||++
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~   83 (257)
T cd08223           4 FVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCE   83 (257)
T ss_pred             EEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccC
Confidence            3478999999999999988788899999986542  2344567777776  4899999999998764 446789999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|.+++...  ..+++.+++.++.|++.||+ |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        84 ~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~-~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~  150 (257)
T cd08223          84 GGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQ-YLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIAR  150 (257)
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCchhEEEecCCcEEEecccceE
Confidence            99999999753  56899999999999999999 9999   899999999999    78899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.2e-18  Score=181.45  Aligned_cols=134  Identities=22%  Similarity=0.306  Sum_probs=121.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|.||.||+|.....++.||+|++.... .....+.+.|+..+  ++++||.+++|.+..+..++++||||.+|++
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv   98 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSV   98 (467)
T ss_pred             hhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcch
Confidence            68999999999999998888999999998753 34556778888774  8899999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+.|+....+++.++.-|.+++..||. |||.   .+.+|||||+.|    ..+.+|++|||+|-
T Consensus        99 ~~lL~~~~~~~E~~i~~ilre~l~~l~-ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgVa~  159 (467)
T KOG0201|consen   99 LDLLKSGNILDEFEIAVILREVLKGLD-YLHS---EKKIHRDIKAANILLSESGDVKLADFGVAG  159 (467)
T ss_pred             hhhhccCCCCccceeeeehHHHHHHhh-hhhh---cceecccccccceeEeccCcEEEEecceee
Confidence            999998777799999999999999999 9999   889999999999    77999999999874

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-17  Score=192.18  Aligned_cols=138  Identities=25%  Similarity=0.406  Sum_probs=120.8

Q ss_pred             hhhhhcccCCceEEEEEEEcc---C----CEEEEEEEeccCc-hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeE
Q 038969          536 NFEKVIGKGGFGTVYHGYLEF---N----GTQVAVKMLSASS-VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMG  604 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~---~----g~~VAVK~l~~~~-~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~  604 (678)
                      .+.+.+|+|.||.|++|....   .    ...||||+++... ..+.+.+..|+..+   .+|+|++.++|+|..++..+
T Consensus       299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~  378 (609)
T KOG0200|consen  299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLY  378 (609)
T ss_pred             cccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceE
Confidence            345689999999999998631   1    3579999998753 34567888898884   78999999999999999999


Q ss_pred             EEEecCCCCCHHHhhcCCC----------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC
Q 038969          605 LIYEFMAKGNLEEHLSGAN----------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK  664 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~~----------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~  664 (678)
                      +|+||++.|+|.+||+...                .++..+.+.++.|||.||+ ||++   .++|||||.++|    ++
T Consensus       379 ~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe-~L~~---~~~vHRDLAaRNVLi~~~  454 (609)
T KOG0200|consen  379 VIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGME-YLAS---VPCVHRDLAARNVLITKN  454 (609)
T ss_pred             EEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHH-HHhh---CCccchhhhhhhEEecCC
Confidence            9999999999999998643                3999999999999999999 9999   889999999999    77


Q ss_pred             CcEEEEeeCCccc
Q 038969          665 NIVKLITFSIIKN  677 (678)
Q Consensus       665 ~~vkI~DFGlar~  677 (678)
                      ..+||+||||||+
T Consensus       455 ~~~kIaDFGlar~  467 (609)
T KOG0200|consen  455 KVIKIADFGLARD  467 (609)
T ss_pred             CEEEEccccceec
Confidence            8999999999995

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=4.3e-17  Score=166.18  Aligned_cols=135  Identities=21%  Similarity=0.371  Sum_probs=122.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||++....+++.||+|.+.....  ....++.+|++.  .++|+|++++++++...+..+++|||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENG   84 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCC
Confidence            4689999999999999877788999999977643  455678888887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++..+..++.|++.||. |||+   .+|+||||+|+|    .++.+||+|||+++
T Consensus        85 ~L~~~~~~~~~l~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  147 (254)
T cd06627          85 SLRQIIKKFGPFPESLVAVYVYQVLQGLA-YLHE---QGVIHRDIKAANILTTKDGVVKLADFGVAT  147 (254)
T ss_pred             cHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHhh---CCcccCCCCHHHEEECCCCCEEEeccccce
Confidence            99999987778999999999999999999 9999   899999999999    77899999999886

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.73  E-value=3e-17  Score=175.56  Aligned_cols=126  Identities=15%  Similarity=0.124  Sum_probs=99.1

Q ss_pred             hhhcccCCceEEEEEEEcc-CCEEEEEEEeccC-----chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEF-NGTQVAVKMLSAS-----SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-~g~~VAVK~l~~~-----~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|.... +++.||||++...     .....+.|.+|++++  ++|+|++..+..   .+..+|||||
T Consensus        23 ~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~~~LVmE~   99 (365)
T PRK09188         23 TAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGKDGLVRGW   99 (365)
T ss_pred             ccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCCcEEEEEc
Confidence            4789999999999998764 5778899987533     122345688998884  899999853322   2467999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC-CCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS-SSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl-k~~N----~~~~vkI~DFGlar~  677 (678)
                      +++++|... ..   ..   ...++.++++||+ |||+   .+|+|||| ||+|    .++.+||+|||+|+.
T Consensus       100 ~~G~~L~~~-~~---~~---~~~~~~~i~~aL~-~lH~---~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~  161 (365)
T PRK09188        100 TEGVPLHLA-RP---HG---DPAWFRSAHRALR-DLHR---AGITHNDLAKPQNWLMGPDGEAAVIDFQLASV  161 (365)
T ss_pred             cCCCCHHHh-Cc---cc---hHHHHHHHHHHHH-HHHH---CCCeeCCCCCcceEEEcCCCCEEEEECcccee
Confidence            999999732 21   11   1467889999999 9999   89999999 9999    667899999999973

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.73  E-value=3.8e-17  Score=171.59  Aligned_cols=133  Identities=20%  Similarity=0.246  Sum_probs=119.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      ..||+|+||.||++....+++.||||.+..........+..|+..  .++|+|++++++++...+..++||||+++++|.
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            579999999999999977899999999876555556678888876  489999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++.. ..+++.....++.|++.||+ |||+   .+++||||+|+|    +++.++|+|||+++
T Consensus       106 ~~~~~-~~~~~~~~~~~~~ql~~~l~-~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~  164 (292)
T cd06657         106 DIVTH-TRMNEEQIAAVCLAVLKALS-VLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  164 (292)
T ss_pred             HHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEEcccccce
Confidence            98864 46899999999999999999 9999   899999999999    67889999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.73  E-value=2.9e-17  Score=174.17  Aligned_cols=131  Identities=15%  Similarity=0.227  Sum_probs=108.1

Q ss_pred             hhcccCCceEEEEEEEc--cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLE--FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|+..  ..++.||+|.+.....  ...+.+|+.+  .++||||+++++++..  ....+++|||+. 
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-   83 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-   83 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCCC--cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-
Confidence            57999999999999865  2457899999875432  2346677776  4899999999998854  456899999996 


Q ss_pred             CCHHHhhcCC---------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCc
Q 038969          613 GNLEEHLSGA---------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSII  675 (678)
Q Consensus       613 GsL~~~L~~~---------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGla  675 (678)
                      ++|.+++...         ..+++..+..++.|++.||+ |||+   .+|+||||||+|        ..+.+||+|||+|
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~-~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIH-YLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHH-HHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence            4888887521         35899999999999999999 9999   899999999999        2367999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       160 ~  160 (317)
T cd07868         160 R  160 (317)
T ss_pred             e
Confidence            6

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.73  E-value=3.8e-17  Score=167.34  Aligned_cols=135  Identities=19%  Similarity=0.263  Sum_probs=119.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.+|++....+|+.||+|.+...  .....+++.+|+..  .++|+||+++++++...+..++||||++++
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGG   84 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCC
Confidence            46899999999999999878899999998653  23345678888777  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.++++++.|++.||+ |||+   .+++|+||+|+|    .++.+||+|||+++
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~  149 (256)
T cd08218          85 DLYKKINAQRGVLFPEDQILDWFVQICLALK-HVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIAR  149 (256)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEEcCCCCEEEeecccee
Confidence            999999754  36899999999999999999 9999   889999999999    77889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.73  E-value=2.7e-17  Score=171.98  Aligned_cols=136  Identities=22%  Similarity=0.267  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccCch----hhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASSV----QGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~~----~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+++..   .+|+.||+|++.....    ...+.+..|+.++  + +|+||+++++++......++||
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLIL   84 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEE
Confidence            468999999999999873   3678999999975422    2235677777763  5 6999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.+++.....+++.++..++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++.
T Consensus        85 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~-~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  154 (290)
T cd05613          85 DYINGGELFTHLSQRERFKEQEVQIYSGEIVLALE-HLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKE  154 (290)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHeEECCCCCEEEeeCcccee
Confidence            99999999999987778999999999999999999 9999   899999999999    888999999998863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.73  E-value=2.8e-17  Score=168.34  Aligned_cols=131  Identities=25%  Similarity=0.452  Sum_probs=113.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||++..  .++.||+|.++...  ....+.+|+..  .++|+|++++++++... ..++||||+++|+
T Consensus        10 ~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~   84 (254)
T cd05083          10 LGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGN   84 (254)
T ss_pred             eeeeeccCCCCceEeccc--CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCC
Confidence            347899999999999975  68899999987543  23567788777  48999999999998654 4799999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.+++.++.|+++||. |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        85 L~~~l~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~  148 (254)
T cd05083          85 LVNFLRTRGRALVSVIQLLQFSLDVAEGME-YLES---KKLVHRDLAARNILVSEDGVAKVSDFGLAR  148 (254)
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccCcceEEEcCCCcEEECCCccce
Confidence            99999754  45899999999999999999 9999   899999999999    77899999999886

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.73  E-value=4.6e-17  Score=171.99  Aligned_cols=134  Identities=22%  Similarity=0.267  Sum_probs=116.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||+|.+....   ....+++.+|+..  .++|+|+++++++|...+..++||||++ 
T Consensus        20 ~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-   98 (307)
T cd06607          20 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-   98 (307)
T ss_pred             heeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-
Confidence            368999999999999987788999999986432   2334568888877  4899999999999999999999999997 


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.. ...+++.++..++.|++.||. |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        99 g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~-~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~  163 (307)
T cd06607          99 GSASDILEVHKKPLQEVEIAAICHGALQGLA-YLHS---HERIHRDIKAGNILLTEPGTVKLADFGSAS  163 (307)
T ss_pred             CCHHHHHHHcccCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCcccEEECCCCCEEEeecCcce
Confidence            578777753 367999999999999999999 9999   889999999999    78899999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.72  E-value=4.2e-17  Score=168.72  Aligned_cols=135  Identities=26%  Similarity=0.354  Sum_probs=113.2

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeE
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMG  604 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~  604 (678)
                      .+.||+|+||.||+|....   .++.||||++...  .....+++.+|+..  .++||||+++++++....      ..+
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   83 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPM   83 (273)
T ss_pred             hhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceE
Confidence            4689999999999998643   3678999998764  33445678888877  489999999999885432      247


Q ss_pred             EEEecCCCCCHHHhhcCC------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          605 LIYEFMAKGNLEEHLSGA------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      +++||+++|+|.+++...      ..+++..+++++.|++.||+ |||+   .+|+||||||+|    ++..+||+|||+
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dikp~nili~~~~~~kl~dfg~  159 (273)
T cd05074          84 VILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGME-YLSS---KNFIHRDLAARNCMLNENMTVCVADFGL  159 (273)
T ss_pred             EEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeecccchhhEEEcCCCCEEECcccc
Confidence            899999999999887421      35899999999999999999 9999   889999999999    788999999999


Q ss_pred             cc
Q 038969          675 IK  676 (678)
Q Consensus       675 ar  676 (678)
                      ++
T Consensus       160 ~~  161 (273)
T cd05074         160 SK  161 (273)
T ss_pred             cc
Confidence            86

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.72  E-value=4.5e-17  Score=167.21  Aligned_cols=136  Identities=22%  Similarity=0.284  Sum_probs=122.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|++|.||++....+++.||||++..... ...+++.+|+..  .++|+|++++++++...+..++||||+++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGS   85 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCc
Confidence            4789999999999999987799999999977643 446778888877  4889999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++..++.++.|+++||+ |||+.  .+++||||+|+|    .++.++|+|||+++
T Consensus        86 L~~~l~~~~~l~~~~~~~~~~~l~~~l~-~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~~  148 (264)
T cd06623          86 LADLLKKVGKIPEPVLAYIARQILKGLD-YLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISK  148 (264)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHhcc--CCCccCCCCHHHEEECCCCCEEEccCccce
Confidence            9999987778999999999999999999 99974  579999999999    88899999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.72  E-value=2.5e-17  Score=180.39  Aligned_cols=129  Identities=12%  Similarity=0.119  Sum_probs=112.2

Q ss_pred             hhhcccCCceEEEEEEEc--cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLE--FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||++...  ..++.||+|.+....     .+.+|+.+  .++|+||+++++++......++|||++. +
T Consensus        97 ~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~-----~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  170 (392)
T PHA03207         97 LSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK-----TPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-C  170 (392)
T ss_pred             EEeecCCCCeEEEEEEEcCCccceeEEEEeccccc-----cHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-C
Confidence            468999999999999753  235689999886532     33566666  4899999999999999999999999996 6


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    ..+.+||+|||+|+
T Consensus       171 ~l~~~l~~~~~l~~~~~~~i~~ql~~aL~-~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~a~  233 (392)
T PHA03207        171 DLFTYVDRSGPLPLEQAITIQRRLLEALA-YLHG---RGIIHRDVKTENIFLDEPENAVLGDFGAAC  233 (392)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEEcCCCCEEEccCcccc
Confidence            89999976678999999999999999999 9999   899999999999    78899999999986

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.72  E-value=2.9e-17  Score=192.24  Aligned_cols=139  Identities=19%  Similarity=0.224  Sum_probs=116.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+++....+..||+|.+...  .......|..|+.+  .++|||||++++++..  ....+|||||++
T Consensus        18 l~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~   97 (1021)
T PTZ00266         18 IKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCD   97 (1021)
T ss_pred             EEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCC
Confidence            47899999999999999878889999998754  23345678888887  4999999999998854  456899999999


Q ss_pred             CCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCC----CCccccCCCCCC----C----------------
Q 038969          612 KGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCC----PHICESSSSSNP----H----------------  663 (678)
Q Consensus       612 ~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~----~~iiHrDlk~~N----~----------------  663 (678)
                      +|+|.++|...    ..+++..++.|+.||+.||+ |||+...    .+||||||||+|    .                
T Consensus        98 gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALa-YLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~n  176 (1021)
T PTZ00266         98 AGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALA-YCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLN  176 (1021)
T ss_pred             CCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHhcccccccCCceeccCcHHHeEeecCccccccccccccccC
Confidence            99999999742    57999999999999999999 9998321    459999999999    2                


Q ss_pred             -CCcEEEEeeCCccc
Q 038969          664 -KNIVKLITFSIIKN  677 (678)
Q Consensus       664 -~~~vkI~DFGlar~  677 (678)
                       ...+||+|||+++.
T Consensus       177 g~~iVKLsDFGlAr~  191 (1021)
T PTZ00266        177 GRPIAKIGDFGLSKN  191 (1021)
T ss_pred             CCCceEEccCCcccc
Confidence             12489999999863

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.72  E-value=1.1e-17  Score=174.19  Aligned_cols=134  Identities=17%  Similarity=0.237  Sum_probs=116.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||+|.++....  .....+.+|+..  .++|+|++++++++.+....++|+||++ +
T Consensus         5 ~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   83 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-Q   83 (284)
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-C
Confidence            3679999999999999987899999999875422  223456677776  4899999999999999999999999997 5


Q ss_pred             CHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.. ...+++..++.++.|+++||. |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~qi~~al~-~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  147 (284)
T cd07839          84 DLKKYFDSCNGDIDPEIVKSFMFQLLKGLA-FCHS---HNVLHRDLKPQNLLINKNGELKLADFGLAR  147 (284)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCCHHHEEEcCCCcEEECccchhh
Confidence            88888764 367999999999999999999 9999   899999999999    78899999999886

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.72  E-value=4.5e-17  Score=170.24  Aligned_cols=135  Identities=19%  Similarity=0.244  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      .+.||+|++|.||++....+++.+|+|.+..... ....++.+|++.  .++|+||+++++++..  .+..++||||+++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   85 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEG   85 (287)
T ss_pred             EEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCC
Confidence            3689999999999999977889999999976432 345678888887  4899999999999854  3468999999999


Q ss_pred             CCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++..    ...+++..+..++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||+++
T Consensus        86 ~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~-~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  153 (287)
T cd06621          86 GSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLS-YLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVSG  153 (287)
T ss_pred             CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEecCCeEEEeeccccc
Confidence            999988753    256899999999999999999 9999   899999999999    77889999999976

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.72  E-value=4.3e-17  Score=166.71  Aligned_cols=135  Identities=22%  Similarity=0.287  Sum_probs=118.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||++....+++.+|||.+...  .....+.+..|+..  .++|+|++++++.+..++..++||||++++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGG   84 (256)
T ss_pred             EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCC
Confidence            46899999999999998778899999998654  23345678888877  489999999999999899999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++..+++++.|+++||+ |||+   .+++||||+|+|     ++..+||+|||+++
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~  150 (256)
T cd08220          85 TLAEYIQKRCNSLLDEDTILHFFVQILLALH-HVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISK  150 (256)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCce
Confidence            999999764  45899999999999999999 9999   899999999999     34568999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.72  E-value=3.1e-17  Score=177.71  Aligned_cols=133  Identities=22%  Similarity=0.276  Sum_probs=112.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~  607 (678)
                      .+.||+|+||.||++.....++.||||++...  .....+.+.+|+..  .++|+||+++++++...      ...++||
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~  108 (364)
T cd07875          29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM  108 (364)
T ss_pred             EEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEE
Confidence            36899999999999998778899999999753  22334567777766  48999999999987543      3579999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++ +|.+++.  ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       109 e~~~~-~l~~~~~--~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  175 (364)
T cd07875         109 ELMDA-NLCQVIQ--MELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             eCCCC-CHHHHHH--hcCCHHHHHHHHHHHHHHHH-HHhh---CCeecCCCCHHHEEECCCCcEEEEeCCCccc
Confidence            99975 7888775  35889999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.72  E-value=4e-17  Score=172.91  Aligned_cols=131  Identities=15%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             hhcccCCceEEEEEEEcc--CCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEF--NGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      ..||+|+||.||+|+...  .+..||+|.+.....  ...+.+|+.+  .++|+||+++++++..  ....++||||+++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI--SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCC--cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            579999999999998752  446899999875432  2356677776  4899999999999853  5678999999975


Q ss_pred             CCHHHhhcCC---------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCc
Q 038969          613 GNLEEHLSGA---------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSII  675 (678)
Q Consensus       613 GsL~~~L~~~---------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGla  675 (678)
                       +|.+++...         ..+++..+..++.|+++||+ |||+   .+|+||||||+|        +.+.+||+|||+|
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07867          85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIH-YLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHH-HHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEeeccce
Confidence             788877421         35899999999999999999 9999   899999999999        2468999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       160 ~  160 (317)
T cd07867         160 R  160 (317)
T ss_pred             e
Confidence            6

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.72  E-value=5.9e-17  Score=169.09  Aligned_cols=134  Identities=19%  Similarity=0.252  Sum_probs=121.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||+|....++..||+|.+..... ..+.+.+|++.  .++|+|++++++++......++|+||+++++|
T Consensus        24 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L  102 (286)
T cd06614          24 LEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSL  102 (286)
T ss_pred             hHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcH
Confidence            3689999999999999987789999999986544 45677888876  48999999999999999999999999999999


Q ss_pred             HHhhcCCC-CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~-~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.... .+++.+++.++.|+++||+ |||+   .+|+|+||+|+|    .++.+||+|||++.
T Consensus       103 ~~~l~~~~~~l~~~~~~~i~~~i~~~L~-~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~  164 (286)
T cd06614         103 TDIITQNFVRMNEPQIAYVCREVLQGLE-YLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFAA  164 (286)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence            99998765 8999999999999999999 9999   899999999999    78899999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=4.3e-18  Score=170.47  Aligned_cols=137  Identities=21%  Similarity=0.256  Sum_probs=120.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      |.++||+|.||.|..++-+..|+.+|+|++++.-.   .+...-..|-+.  ..+||.+..|--.++..+.+|.||||..
T Consensus       172 fLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyan  251 (516)
T KOG0690|consen  172 FLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYAN  251 (516)
T ss_pred             HHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEcc
Confidence            56899999999999999988999999999987522   222223334333  4889999999888899999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||.|.-+|.....+++....-+-.+|..||. |||+   ..||.||||.+|    .++++||+||||||+
T Consensus       252 GGeLf~HLsrer~FsE~RtRFYGaEIvsAL~-YLHs---~~ivYRDlKLENLlLDkDGHIKitDFGLCKE  317 (516)
T KOG0690|consen  252 GGELFFHLSRERVFSEDRTRFYGAEIVSALG-YLHS---RNIVYRDLKLENLLLDKDGHIKITDFGLCKE  317 (516)
T ss_pred             CceEeeehhhhhcccchhhhhhhHHHHHHhh-hhhh---CCeeeeechhhhheeccCCceEeeecccchh
Confidence            9999999998888999999999999999999 9999   899999999999    899999999999997

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.72  E-value=4e-17  Score=169.87  Aligned_cols=146  Identities=22%  Similarity=0.373  Sum_probs=119.4

Q ss_pred             cHhhHHHHHhhh--hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--h-cCCCCcccEEEEEEc-
Q 038969          526 SYSDVAKITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--I-VHHKNLTTLVGYCDE-  599 (678)
Q Consensus       526 s~~el~~~t~~f--~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~-  599 (678)
                      ++.++......|  .+.||+|+||.||+|....+++.+|+|.+.... ....++..|+..  . .+|+||+++++++.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            334443344443  368999999999999998788999999986543 233556677665  2 479999999999853 


Q ss_pred             -----CCeeEEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          600 -----DTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       600 -----~~~~~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                           ....+++|||+++|+|.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+|
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~LH~---~~ivH~dl~~~nili~~~~~~~  161 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLA-HLHA---HKVIHRDIKGQNVLLTENAEVK  161 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEE
Confidence                 45789999999999999999653  46889999999999999999 9999   899999999999    788899


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+++
T Consensus       162 l~dfg~~~  169 (282)
T cd06636         162 LVDFGVSA  169 (282)
T ss_pred             EeeCcchh
Confidence            99999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.72  E-value=2.6e-17  Score=171.51  Aligned_cols=135  Identities=20%  Similarity=0.240  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|....+++.||||.++...  ....+.+.+|++.  .++|+||+++++++..++..++||||++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~   85 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERT   85 (288)
T ss_pred             EEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCC
Confidence            468999999999999998778899999987542  2334678888877  488999999999999999999999999988


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+..++.....+++.++..++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~  148 (288)
T cd07833          86 LLELLEASPGGLPPDAVRSYIWQLLQAIA-YCHS---HNIIHRDIKPENILVSESGVLKLCDFGFAR  148 (288)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEECCCCCEEEEeeeccc
Confidence            77777766567999999999999999999 9999   899999999999    78899999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.72  E-value=4.5e-17  Score=169.45  Aligned_cols=134  Identities=18%  Similarity=0.306  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|++|.||+|+...+|+.||||.++..... ....+.+|+..  .++|+||+++++++...+..++||||+++ +
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~   83 (284)
T cd07836           5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK-D   83 (284)
T ss_pred             eeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-c
Confidence            46899999999999999878999999999765322 34556677766  48999999999999999999999999985 8


Q ss_pred             HHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...   ..+++.+++.++.|++.||+ |||+   .+++||||||+|    +++.+||+|||+++
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          84 LKKYMDTHGVRGALDPNTVKSFTYQLLKGIA-FCHE---NRVLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhh
Confidence            99988643   46899999999999999999 9999   899999999999    78899999999886

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.72  E-value=3.5e-17  Score=175.12  Aligned_cols=134  Identities=21%  Similarity=0.287  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh--------------HHHHHHHHHH--hcCCCCcccEEEEEEcCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--------------YKQFQAEVQY--IVHHKNLTTLVGYCDEDT  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~--------------~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~  601 (678)
                      .+.||+|+||.||+|.....++.||||.++......              ...+.+|+..  .++|+||+++++++..++
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            367999999999999988789999999986542211              1246677776  489999999999999999


Q ss_pred             eeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          602 NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       602 ~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ..++||||++ |+|.+++.....+++.....++.|+++||+ |||+   .+|+||||+|+|    .++.+||+|||+++
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~-~LH~---~~i~H~dl~~~nill~~~~~~kl~dfg~~~  167 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLN-VLHK---WYFMHRDLSPANIFINSKGICKIADFGLAR  167 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecccccHHHeEECCCCCEEECCcccee
Confidence            9999999997 699999987778999999999999999999 9999   899999999999    78899999999876

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.72  E-value=4.7e-17  Score=166.81  Aligned_cols=139  Identities=20%  Similarity=0.229  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||++....+++.||+|.+...  .....+++..|+..  .++|+|++++++++..  +...+++|||++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~   84 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCE   84 (265)
T ss_pred             eeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhcc
Confidence            36799999999999998878899999998754  23345667788777  4899999999998754  456799999999


Q ss_pred             CCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCC--CCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGC--CPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~--~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++..    ...+++.+++.++.|+++||+ |||..+  ..+++||||||+|    +++.+||+|||+++.
T Consensus        85 ~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~-~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          85 GGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALY-ECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             CCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHH-HHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            9999999864    267999999999999999999 999322  3899999999999    779999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.72  E-value=4.9e-17  Score=170.34  Aligned_cols=135  Identities=16%  Similarity=0.228  Sum_probs=116.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....+++.+|+|.++.....  ....+.+|+..  .++|+||+++++++...  ...++||||++
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~   89 (293)
T cd07843          10 LNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE   89 (293)
T ss_pred             hhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC
Confidence            47899999999999999877899999999754322  23356677766  48999999999998776  88999999997


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                       ++|.+++... ..+++.+++.++.|+++||+ |||+   .+++||||||+|    +++.+||+|||+++.
T Consensus        90 -~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~~~~  155 (293)
T cd07843          90 -HDLKSLMETMKQPFLQSEVKCLMLQLLSGVA-HLHD---NWILHRDLKTSNLLLNNRGILKICDFGLARE  155 (293)
T ss_pred             -cCHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCCHHHEEECCCCcEEEeecCceee
Confidence             5999998754 46999999999999999999 9999   889999999999    778999999998763

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.72  E-value=2.7e-17  Score=171.22  Aligned_cols=133  Identities=17%  Similarity=0.311  Sum_probs=116.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|++|.||+|+...+|+.||||.+....  ......+.+|++.  .++|+||+++++++...+..++||||+. ++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~   84 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QD   84 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cC
Confidence            67999999999999987788999999987542  2233567888877  4899999999999999999999999996 68


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++.+++.++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~-~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~  148 (284)
T cd07860          85 LKKFMDASPLSGIPLPLIKSYLFQLLQGLA-FCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  148 (284)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEECCCCCEEEeeccchh
Confidence            99998653  57899999999999999999 9999   899999999999    78899999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.71  E-value=5.8e-17  Score=166.76  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=121.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|++|.||++....+++.||+|.+.... ....+++.+|+..  .++|+||+++++.+......++++||+++++
T Consensus         6 ~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (265)
T cd06605           6 LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGS   85 (265)
T ss_pred             HHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCc
Confidence            468999999999999998788999999987653 3445678888876  4889999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..+.+++.|+++||+ |||+.  .+++||||||+|    +++.+||+|||+++
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~  149 (265)
T cd06605          86 LDKILKEVQGRIPERILGKIAVAVLKGLT-YLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSG  149 (265)
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHHHHH-HHcCC--CCeecCCCCHHHEEECCCCCEEEeecccch
Confidence            99999865 78899999999999999999 99983  579999999999    77889999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=9e-18  Score=163.15  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=121.7

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc-----CCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-----DTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-----~~~~~LV~Ey  609 (678)
                      +.+.+|+|||+.||.++.-.+++.+|+|++...+.++.+..++|++.  +++||||++++.++..     +...||+++|
T Consensus        25 i~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Py  104 (302)
T KOG2345|consen   25 IQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPY  104 (302)
T ss_pred             EeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeeh
Confidence            35789999999999999776889999999988877777888888887  6999999999998743     3458999999


Q ss_pred             CCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ...|+|.+.+...    ..+++.+.+.|+.++++||+ +||. ..++.+||||||.|    +.+.++|.|||-+..
T Consensus       105 y~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~-~lH~-~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen  105 YKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLE-ALHE-KEPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             hccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHH-HHhc-cCCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            9999999998643    57999999999999999999 9998 34569999999999    779999999998764

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.71  E-value=7e-17  Score=166.05  Aligned_cols=135  Identities=18%  Similarity=0.229  Sum_probs=120.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....++..+|+|++.... ....+.+.+|+..  .++|+|++++++.+..++..++|+||+++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~   85 (267)
T cd06610           6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGS   85 (267)
T ss_pred             eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCc
Confidence            478999999999999987678899999997543 2355678888876  4899999999999999999999999999999


Q ss_pred             HHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.++++..   ..+++..+..++.|++.||+ |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~-~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~~  150 (267)
T cd06610          86 LLDIMKSSYPRGGLDEAIIATVLKEVLKGLE-YLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVSA  150 (267)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHhEEEcCCCCEEEcccchHH
Confidence            99999753   46899999999999999999 9999   899999999999    77889999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.71  E-value=5.1e-18  Score=193.31  Aligned_cols=134  Identities=19%  Similarity=0.190  Sum_probs=119.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .++||+|+||.|..++++..++.+|+|+++...   .....-|..|-.++  -..+-|+.|+-.+.+..++|||||||+|
T Consensus        80 lKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pG  159 (1317)
T KOG0612|consen   80 LKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPG  159 (1317)
T ss_pred             HHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccC
Confidence            379999999999999998889999999998742   33445677776665  4578899999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      |+|-.+|.....+++..+..++..|..||. -||+   .|.|||||||.|    ..|++||+|||-|
T Consensus       160 GDlltLlSk~~~~pE~~ArFY~aEiVlAld-slH~---mgyVHRDiKPDNvLld~~GHikLADFGsC  222 (1317)
T KOG0612|consen  160 GDLLTLLSKFDRLPEDWARFYTAEIVLALD-SLHS---MGYVHRDIKPDNVLLDKSGHIKLADFGSC  222 (1317)
T ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHHH-HHHh---ccceeccCCcceeEecccCcEeeccchhH
Confidence            999999988778999999999999999999 9999   999999999999    8999999999965

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.71  E-value=8e-17  Score=164.11  Aligned_cols=135  Identities=20%  Similarity=0.346  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|++|.||+|....+++.|++|.+.....  ...+.+.+|+..  .++|+||+++++.+...  ...++++||++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   84 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVS   84 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecC
Confidence            3679999999999999977799999999876542  446678888877  48999999999999888  88999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|.+++.....+++.++..++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||.++
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~  149 (260)
T cd06606          85 GGSLSSLLKKFGKLPEPVIRKYTRQILEGLA-YLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAK  149 (260)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEEcCCCCEEEcccccEE
Confidence            9999999987678999999999999999999 9999   899999999999    77899999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.71  E-value=1.1e-16  Score=162.31  Aligned_cols=136  Identities=26%  Similarity=0.381  Sum_probs=123.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|++|.||++....+++.+++|++........+++.+|+..  .++|+|++++++++......++++||+++++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L   84 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSL   84 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcH
Confidence            3679999999999999977889999999987655566788888877  48899999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.++..++.|+++||+ |||.   .+++||||+|+|    +++.+||+|||+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          85 KDLLKSTNQTLTESQIAYVCKELLKGLE-YLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHHH-Hhhc---CCEecCCCCHHHEEEccCCeEEEeecccccc
Confidence            9999875 68999999999999999999 9999   899999999999    788999999998763

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.71  E-value=1.6e-16  Score=168.72  Aligned_cols=134  Identities=22%  Similarity=0.278  Sum_probs=116.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...++..||+|.+....   ....+++..|+..  .++|+|++++++++......++||||++ 
T Consensus        30 ~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  108 (317)
T cd06635          30 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL-  108 (317)
T ss_pred             hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-
Confidence            367999999999999987788999999987532   2234567778776  4899999999999999999999999997 


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+.+.. ...++|.++..++.|++.||. |||+   .+|+||||+|+|    .++.+||+|||+++
T Consensus       109 g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~  173 (317)
T cd06635         109 GSASDLLEVHKKPLQEVEIAAITHGALQGLA-YLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSAS  173 (317)
T ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCcccEEECCCCCEEEecCCCcc
Confidence            588887754 367999999999999999999 9999   899999999999    77899999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.71  E-value=7.4e-17  Score=167.55  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=113.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....+++.||+|.++... .........|+..  .+ +|+|++++++++.+.  +..++|+||++
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~   83 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD   83 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC
Confidence            467999999999999988788999999987642 1222333456555  24 599999999999877  88999999997


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                       |+|.+++... ..++|.+++.++.|+++||+ |||+   .+++||||+|+|   ..+.+||+|||+++.
T Consensus        84 -~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~-~LH~---~~i~H~dl~p~ni~l~~~~~kl~dfg~~~~  148 (282)
T cd07831          84 -MNLYELIKGRKRPLPEKRVKSYMYQLLKSLD-HMHR---NGIFHRDIKPENILIKDDILKLADFGSCRG  148 (282)
T ss_pred             -ccHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecccCHHHEEEcCCCeEEEecccccc
Confidence             5888888754 57899999999999999999 9999   899999999999   449999999999863

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.71  E-value=5.8e-17  Score=168.68  Aligned_cols=134  Identities=18%  Similarity=0.278  Sum_probs=117.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|....+|+.||+|++.....  .....+.+|+..  .++|+|++++++++...+..+++|||++ +
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~   82 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-L   82 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-c
Confidence            3679999999999999877899999999875432  223567778777  4899999999999999999999999995 6


Q ss_pred             CHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++....  .+++..++.++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~  147 (283)
T cd07835          83 DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIA-YCHS---HRVLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeCCCCCHHHEEEcCCCcEEEeeccccc
Confidence            9999997654  7999999999999999999 9999   899999999999    88899999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.71  E-value=2.5e-17  Score=170.58  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=119.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|++|.||++....+|+.||+|++....   ....+.+..|+.+  .++ |+||+++++++...+..++||||++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (280)
T cd05581           6 GKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAP   85 (280)
T ss_pred             eeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCC
Confidence            468999999999999998789999999987532   2334566777666  477 9999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|.+++.....+++.+++.|+.|++.||+ |||+   .+++|+||+|+|    .++.++|+|||+++
T Consensus        86 ~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~-~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~~~  150 (280)
T cd05581          86 NGELLQYIRKYGSLDEKCTRFYAAEILLALE-YLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAK  150 (280)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCHHHeEECCCCCEEecCCcccc
Confidence            9999999987778999999999999999999 9999   899999999999    77899999999876

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.71  E-value=7.4e-17  Score=167.70  Aligned_cols=134  Identities=18%  Similarity=0.262  Sum_probs=118.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|++|.||+|....+++.+|+|.+....  ....+.+.+|+..  .++|+|++++++++...  +..++|+||++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   83 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD   83 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc
Confidence            367999999999999998778999999998753  2334567788777  48999999999999887  88999999997


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      + +|.+++... ..+++.+++.++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||+++
T Consensus        84 ~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~-~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~  148 (287)
T cd07840          84 H-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQ-YLHS---NGILHRDIKGSNILINNDGVLKLADFGLAR  148 (287)
T ss_pred             c-cHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCcHHHeEEcCCCCEEEcccccee
Confidence            5 899998765 57999999999999999999 9999   899999999999    78899999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.71  E-value=6.2e-17  Score=170.08  Aligned_cols=134  Identities=18%  Similarity=0.267  Sum_probs=114.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC----------ee
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT----------NM  603 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~----------~~  603 (678)
                      .+.||+|+||.||+|....+|+.||+|.++...  ......+.+|++.  .++|||++++++++.+..          ..
T Consensus        12 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   91 (302)
T cd07864          12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAF   91 (302)
T ss_pred             eeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcE
Confidence            478999999999999998788999999997542  2233456777766  489999999999987654          78


Q ss_pred             EEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          604 GLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       604 ~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+||+++ +|.+++... ..+++.+++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        92 ~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~  164 (302)
T cd07864          92 YLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLN-YCHK---KNFLHRDIKCSNILLNNKGQIKLADFGLAR  164 (302)
T ss_pred             EEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCcEEeCcccccc
Confidence            999999986 777777654 57999999999999999999 9999   899999999999    78899999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=6.4e-17  Score=166.95  Aligned_cols=134  Identities=22%  Similarity=0.350  Sum_probs=116.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCC------eeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDT------NMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~------~~~LV~E  608 (678)
                      .+.||+|++|.||+|....+++.+|+|.+..... ..++|.+|+..+  + +|+||+++++++....      ..++|||
T Consensus        11 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e   89 (275)
T cd06608          11 VEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVME   89 (275)
T ss_pred             eeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEE
Confidence            4789999999999999976788999999876543 346788888763  4 7999999999997644      4899999


Q ss_pred             cCCCCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++++|.+++..    ...+++..+..++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||+++
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~-~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~  161 (275)
T cd06608          90 LCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLA-YLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVSA  161 (275)
T ss_pred             cCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HHhc---CCcccCCCCHHHEEEccCCeEEECCCccce
Confidence            9999999999864    257899999999999999999 9999   899999999999    78889999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.71  E-value=5e-17  Score=166.29  Aligned_cols=135  Identities=19%  Similarity=0.306  Sum_probs=117.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|..+.+|..+|+|.+....  ....+.+.+|++.  .++|+|++++++.+......++|+||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGG   84 (257)
T ss_pred             EEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCC
Confidence            468999999999999998788999999986542  2334567788877  489999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC-CcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK-NIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~-~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++..++.++.|+++||+ |||+   .+++|+||||+|    ++ ..+||+|||+++
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~  150 (257)
T cd08225          85 DLMKRINRQRGVLFSEDQILSWFVQISLGLK-HIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIAR  150 (257)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccCCHHHEEEcCCCCeEEecccccch
Confidence            999999754  35899999999999999999 9999   889999999999    33 457999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.71  E-value=6.7e-18  Score=168.47  Aligned_cols=134  Identities=17%  Similarity=0.264  Sum_probs=111.8

Q ss_pred             hhcccCCceEEEEEEEccC----CEEEEEEEeccCchh-h-HHHHHHHHHHh--cCCCCcccEEEEEEc-CCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFN----GTQVAVKMLSASSVQ-G-YKQFQAEVQYI--VHHKNLTTLVGYCDE-DTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~----g~~VAVK~l~~~~~~-~-~~~f~~Ev~~~--l~H~NIv~l~g~~~~-~~~~~LV~Ey  609 (678)
                      ..||+|.||.||++.-+..    .+.+|+|+++.++.. + .....+|+...  ++|+||++|..++.. +...+|++||
T Consensus        30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdY  109 (438)
T KOG0666|consen   30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDY  109 (438)
T ss_pred             ceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehh
Confidence            5699999999999965422    237899999876321 1 23456777773  999999999998866 7889999999


Q ss_pred             CCCCCHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGlar  676 (678)
                      .+. +|.+.++-+     +.++...+..|..||+.|+. |||+   .=|+||||||.|        +++.|||+||||||
T Consensus       110 AEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~-YLH~---NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR  184 (438)
T KOG0666|consen  110 AEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVH-YLHS---NWVLHRDLKPANILVMGDGPERGRVKIADLGLAR  184 (438)
T ss_pred             hhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhH-HHhh---hheeeccCCcceEEEeccCCccCeeEeecccHHH
Confidence            988 899888632     67999999999999999999 9999   678999999999        66999999999998


Q ss_pred             c
Q 038969          677 N  677 (678)
Q Consensus       677 ~  677 (678)
                      -
T Consensus       185 ~  185 (438)
T KOG0666|consen  185 L  185 (438)
T ss_pred             H
Confidence            3

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.71  E-value=8.5e-17  Score=171.69  Aligned_cols=132  Identities=22%  Similarity=0.220  Sum_probs=115.0

Q ss_pred             hhcccC--CceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKG--GFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G--~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|  +||+||+++...+|+.||+|++....  ....+.+.+|+.+  .++|+||+++++++..++..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            456777  89999999987789999999987542  2334667788776  38999999999999999999999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      |+|.+++...  ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+|++||+.
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~-~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLN-YLHQ---NGYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEeCCCcEEEechHH
Confidence            9999998753  46899999999999999999 9998   899999999999    788999999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.71  E-value=1.1e-16  Score=167.62  Aligned_cols=134  Identities=16%  Similarity=0.251  Sum_probs=114.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|.+|.||+|....+|+.||+|.+.....  .....+.+|+..  .++|+||+++++++......++||||++ +
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   85 (294)
T PLN00009          7 VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-L   85 (294)
T ss_pred             EEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-c
Confidence            3689999999999999887889999999865422  223567778776  4899999999999999999999999996 5


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++..+..++.|++.||+ |||+   .+++||||+|+|     .+..+||+|||+++
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~~~  151 (294)
T PLN00009         86 DLKKHMDSSPDFAKNPRLIKTYLYQILRGIA-YCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLAR  151 (294)
T ss_pred             cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCCcceEEEECCCCEEEEccccccc
Confidence            888888654  34688889999999999999 9999   899999999999     35579999999886

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.70  E-value=8.1e-17  Score=168.61  Aligned_cols=134  Identities=14%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCe-----eEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTN-----MGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~-----~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||+|.++....  .....+.+|+..  .+ +|+||+++++++...+.     .++||
T Consensus         6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~   85 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVF   85 (295)
T ss_pred             eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEe
Confidence            3679999999999999987899999999865422  223567778776  35 57999999999976655     89999


Q ss_pred             ecCCCCCHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-CCcEEEEeeCCcc
Q 038969          608 EFMAKGNLEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-KNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-~~~vkI~DFGlar  676 (678)
                      ||+++ +|.+++...     ..+++.+++.++.||++||+ |||+   .+|+||||||+|    . ++.+||+|||+++
T Consensus        86 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~-~LH~---~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~  159 (295)
T cd07837          86 EYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVA-HCHK---HGVMHRDLKPQNLLVDKQKGLLKIADLGLGR  159 (295)
T ss_pred             eccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCChHHEEEecCCCeEEEeecccce
Confidence            99985 899888542     45899999999999999999 9999   899999999999    4 7899999999886

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.70  E-value=9.9e-17  Score=171.80  Aligned_cols=133  Identities=17%  Similarity=0.279  Sum_probs=114.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hc-CCCCcccEEEEEEc--CCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDE--DTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~--~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+|+.+|||.+...  .......+.+|+..  .+ +|+||+++++++..  ....++||||+
T Consensus        12 ~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~   91 (337)
T cd07852          12 LQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYM   91 (337)
T ss_pred             hHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEeccc
Confidence            47899999999999998767899999988542  22334566778776  47 99999999999864  34689999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      + ++|.+++... .++|..+..++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        92 ~-~~L~~~~~~~-~~~~~~~~~i~~qi~~~L~-~LH~---~~i~H~dl~p~nill~~~~~~kl~d~g~~~  155 (337)
T cd07852          92 E-TDLHAVIRAN-ILEDVHKRYIMYQLLKALK-YIHS---GNVIHRDLKPSNILLNSDCRVKLADFGLAR  155 (337)
T ss_pred             c-cCHHHHHhcC-CCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCcEEEeeccchh
Confidence            7 5999999764 7899999999999999999 9999   899999999999    88899999999886

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.70  E-value=1.4e-16  Score=164.60  Aligned_cols=136  Identities=18%  Similarity=0.263  Sum_probs=114.8

Q ss_pred             hhhcccCCceEEEEEEEcc-CCEEEEEEEeccC----------chhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCee
Q 038969          538 EKVIGKGGFGTVYHGYLEF-NGTQVAVKMLSAS----------SVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNM  603 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-~g~~VAVK~l~~~----------~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~  603 (678)
                      .+.||+|+||.||+|.... .++.+|+|.+...          ......++..|+..   .++|+||+++++++.+.+..
T Consensus         5 ~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   84 (269)
T cd08528           5 LEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRL   84 (269)
T ss_pred             hhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeE
Confidence            4679999999999999875 4678999988532          12233456677765   27899999999999999999


Q ss_pred             EEEEecCCCCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          604 GLIYEFMAKGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       604 ~LV~Ey~~~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ++||||+++++|.+++..    ...+++..+++++.|++.||. |||+.  .+++||||+|+|    .++.+||+|||++
T Consensus        85 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~~--~~i~H~dl~~~nil~~~~~~~~l~dfg~~  161 (269)
T cd08528          85 YIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALR-YLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLA  161 (269)
T ss_pred             EEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HhccC--CceeecCCCHHHEEECCCCcEEEecccce
Confidence            999999999999998742    256899999999999999999 99952  579999999999    7889999999988


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       162 ~  162 (269)
T cd08528         162 K  162 (269)
T ss_pred             e
Confidence            6

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.70  E-value=7.2e-17  Score=170.64  Aligned_cols=134  Identities=16%  Similarity=0.268  Sum_probs=113.5

Q ss_pred             hhhcccCCceEEEEEEEcc--CCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEF--NGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~E  608 (678)
                      .+.||+|++|.||+|....  .++.||+|.+....   ....+.+.+|+.+  .++||||+++++++...  ...++|||
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   84 (316)
T cd07842           5 EGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFD   84 (316)
T ss_pred             EEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEe
Confidence            4679999999999999986  68899999998632   2223556677766  48999999999999887  78999999


Q ss_pred             cCCCCCHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C----CCcEEEEeeCCc
Q 038969          609 FMAKGNLEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H----KNIVKLITFSII  675 (678)
Q Consensus       609 y~~~GsL~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~----~~~vkI~DFGla  675 (678)
                      |+++ +|.+++...     ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .    .+.+||+|||++
T Consensus        85 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          85 YAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVH-YLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             CCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHH-HHHh---CCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            9975 777766422     36899999999999999999 9999   899999999999    5    789999999987


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       160 ~  160 (316)
T cd07842         160 R  160 (316)
T ss_pred             c
Confidence            6

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.70  E-value=9.2e-17  Score=163.60  Aligned_cols=132  Identities=21%  Similarity=0.249  Sum_probs=118.0

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      ||+|+||.||++....+++.+|+|.+.....   .....+..|+..  .++|+||+++++.+..+...++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            6999999999999876789999999876432   234567777766  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.....+++..+..++.|+++||. |||+   .+++|+||+|+|    .++.++|+|||+++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~-~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~  141 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALE-YLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAK  141 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCcceEEEcCCCcEEEeecCcce
Confidence            999987778999999999999999999 9999   889999999999    77889999999875

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.70  E-value=7.3e-17  Score=168.58  Aligned_cols=136  Identities=23%  Similarity=0.244  Sum_probs=117.2

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|++|.||+++..   .+++.||||.++...    ....+.+..|+..+  + +|+||+++++.+..+...++||
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   84 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLIL   84 (288)
T ss_pred             EEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEE
Confidence            468999999999999853   256789999987532    12345677787763  5 6999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.+++.....+++.++..++.|+++||+ |||+   .+++||||+|+|    .++.+||+|||+++.
T Consensus        85 e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~-~lH~---~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~  154 (288)
T cd05583          85 DYVNGGELFTHLYQREHFTESEVRVYIAEIVLALD-HLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKE  154 (288)
T ss_pred             ecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHeEECCCCCEEEEECccccc
Confidence            99999999999987677999999999999999999 9999   899999999999    778899999998863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.70  E-value=1.5e-16  Score=162.28  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=120.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||++....++..+|+|.+.....  ...+++..|++.  .++|+|++++++.+..+...++|+||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~   84 (258)
T cd08215           5 IKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGG   84 (258)
T ss_pred             EeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCC
Confidence            3679999999999999987789999999976533  455677888776  488999999999999999999999999999


Q ss_pred             CHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...    ..+++.+++.++.++++||+ |||+   .+++|+||+|+|    +++.+||+|||++.
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~~  151 (258)
T cd08215          85 DLSQKIKKQKKEGKPFPEEQILDWFVQLCLALK-YLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGISK  151 (258)
T ss_pred             cHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHH-HHHh---CCEecccCChHHeEEcCCCcEEECCcccee
Confidence            999999753    67999999999999999999 9999   799999999999    77899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=6.1e-18  Score=181.43  Aligned_cols=135  Identities=15%  Similarity=0.256  Sum_probs=121.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      -.||.|+||.||++..+..+-..|.|++...+.....+|.-||.++  ++||+||+|++.|...+.++|..|||.||-..
T Consensus        38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVD  117 (1187)
T KOG0579|consen   38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVD  117 (1187)
T ss_pred             hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHh
Confidence            3579999999999998755556788999888888889999999985  89999999999999999999999999999988


Q ss_pred             HhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          617 EHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ..+-+- ..|+..++.-++.|++.||. |||+   ..|||||||+.|    -++.++|+|||.+-.
T Consensus       118 aimlEL~r~LtE~QIqvvc~q~ldALn-~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAK  179 (1187)
T KOG0579|consen  118 AIMLELGRVLTEDQIQVVCYQVLDALN-WLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAK  179 (1187)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHH-HHhh---cchhhhhccccceEEEecCcEeeeccccccc
Confidence            877543 78999999999999999999 9999   899999999999    899999999998653

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.70  E-value=1.4e-16  Score=171.50  Aligned_cols=145  Identities=18%  Similarity=0.296  Sum_probs=119.0

Q ss_pred             HhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC
Q 038969          527 YSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED  600 (678)
Q Consensus       527 ~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~  600 (678)
                      ..++..++++|.  +.||+|+||.||+|....+++.||+|++...  .....+.+.+|+..  .++|+||+++++++...
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~   88 (345)
T cd07877           9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA   88 (345)
T ss_pred             HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeec
Confidence            344555555554  6799999999999998778999999999753  22234567778776  48999999999988542


Q ss_pred             ------CeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          601 ------TNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       601 ------~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                            ...++++|++ +++|.+++.. ..+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+
T Consensus        89 ~~~~~~~~~~lv~~~~-~~~L~~~~~~-~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~NIll~~~~~~kl~  162 (345)
T cd07877          89 RSLEEFNDVYLVTHLM-GADLNNIVKC-QKLTDDHVQFLIYQILRGLK-YIHS---ADIIHRDLKPSNLAVNEDCELKIL  162 (345)
T ss_pred             ccccccccEEEEehhc-ccCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCChHHEEEcCCCCEEEe
Confidence                  3467888887 7899988865 46999999999999999999 9999   899999999999    78899999


Q ss_pred             eeCCccc
Q 038969          671 TFSIIKN  677 (678)
Q Consensus       671 DFGlar~  677 (678)
                      |||+++.
T Consensus       163 dfg~~~~  169 (345)
T cd07877         163 DFGLARH  169 (345)
T ss_pred             ccccccc
Confidence            9999863

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.69  E-value=5.9e-17  Score=173.41  Aligned_cols=134  Identities=15%  Similarity=0.207  Sum_probs=115.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEc----CCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE----DTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~----~~~~~LV~Ey  609 (678)
                      .+.||+|++|.||+|....+|+.||+|++....  ....+.+.+|+.+  .++|+||+++++++..    ....++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~   89 (334)
T cd07855          10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDL   89 (334)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEeh
Confidence            368999999999999988789999999987642  2334566777776  4899999999998753    3568999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +. |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        90 ~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~  155 (334)
T cd07855          90 ME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLK-YIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMAR  155 (334)
T ss_pred             hh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCcEEecccccce
Confidence            95 699999987777999999999999999999 9999   899999999999    88899999999986

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00284 protein kinase; Provisional

Probab=99.69  E-value=1.3e-16  Score=178.96  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=107.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--------hcCCCCcccEEEEEEcC-CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--------IVHHKNLTTLVGYCDED-TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--------~l~H~NIv~l~g~~~~~-~~~~LV~E  608 (678)
                      .+.||+|+||.||+|.....++.||||+++.... ..+++..|+..        ..+|.+++++++++... ...++|||
T Consensus       134 ~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~  212 (467)
T PTZ00284        134 LSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMP  212 (467)
T ss_pred             EEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEe
Confidence            3689999999999999877889999999965321 12233344433        14566799999998654 57899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC----------------cEE
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN----------------IVK  668 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~----------------~vk  668 (678)
                      ++ +++|.+++.....+++.++..|+.||++||+ |||+.  .+||||||||+|    ..+                .+|
T Consensus       213 ~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~-yLH~~--~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vk  288 (467)
T PTZ00284        213 KY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALD-YFHTE--LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVR  288 (467)
T ss_pred             cc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHhc--CCeecCCCCHHHEEEecCCcccccccccccCCCCceEE
Confidence            88 6799999987778999999999999999999 99962  489999999999    222                499


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+++
T Consensus       289 l~DfG~~~  296 (467)
T PTZ00284        289 ICDLGGCC  296 (467)
T ss_pred             ECCCCccc
Confidence            99999875

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.69  E-value=1.1e-16  Score=178.30  Aligned_cols=136  Identities=16%  Similarity=0.278  Sum_probs=105.2

Q ss_pred             hhhcccCCceEEEEEEEc----------------cCCEEEEEEEeccCchhhHHHHHH--------------HHHH--hc
Q 038969          538 EKVIGKGGFGTVYHGYLE----------------FNGTQVAVKMLSASSVQGYKQFQA--------------EVQY--IV  585 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~----------------~~g~~VAVK~l~~~~~~~~~~f~~--------------Ev~~--~l  585 (678)
                      .++||+|+||.||+|...                ..++.||||++........++|.+              |+..  .+
T Consensus       150 ~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l  229 (507)
T PLN03224        150 RDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKI  229 (507)
T ss_pred             eeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHh
Confidence            378999999999999641                245689999997654333334433              3333  24


Q ss_pred             CCCC-----cccEEEEEEc--------CCeeEEEEecCCCCCHHHhhcCC------------------------CCCCHH
Q 038969          586 HHKN-----LTTLVGYCDE--------DTNMGLIYEFMAKGNLEEHLSGA------------------------NTLTWE  628 (678)
Q Consensus       586 ~H~N-----Iv~l~g~~~~--------~~~~~LV~Ey~~~GsL~~~L~~~------------------------~~l~~~  628 (678)
                      +|.+     +++++++|..        ++..+|||||+++|+|.++|+..                        ..++|.
T Consensus       230 ~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~  309 (507)
T PLN03224        230 KRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDIN  309 (507)
T ss_pred             hcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHH
Confidence            4544     4788888753        45689999999999999998642                        235688


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          629 ARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       629 ~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       310 ~~~~i~~ql~~aL~-~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~  358 (507)
T PLN03224        310 VIKGVMRQVLTGLR-KLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVD  358 (507)
T ss_pred             HHHHHHHHHHHHHH-HHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccc
Confidence            89999999999999 9999   889999999999    778999999999863

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.69  E-value=1.7e-16  Score=170.52  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=113.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~LV~E  608 (678)
                      +.||+|+||.||++....+|+.||||.+...  .....+.+.+|+..  .++|+||+++++++....      ..++|||
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  100 (343)
T cd07880          21 KQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMP  100 (343)
T ss_pred             EEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEe
Confidence            6799999999999998878999999998643  22234567778777  489999999999986543      4589999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+ +++|.+++.. ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus       101 ~~-~~~l~~~~~~-~~l~~~~~~~i~~qi~~al~-~LH~---~gi~H~dlkp~Nill~~~~~~kl~dfg~~~  166 (343)
T cd07880         101 FM-GTDLGKLMKH-EKLSEDRIQFLVYQMLKGLK-YIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLAR  166 (343)
T ss_pred             cC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEeeccccc
Confidence            99 6799988864 57999999999999999999 9999   899999999999    78889999999986

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=4e-17  Score=169.16  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=115.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhh-H----HHHHHHHHH--hcCCCCcccEEEEEE-cCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQG-Y----KQFQAEVQY--IVHHKNLTTLVGYCD-EDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~-~----~~f~~Ev~~--~l~H~NIv~l~g~~~-~~~~~~LV~E  608 (678)
                      .+||+|+|+.||++.+....+.||||+-....  ..+ .    +...+|-.+  -+.||.||++++|+. +.+..|-|+|
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLE  548 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLE  548 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeee
Confidence            68999999999999987677889999865431  111 1    223445555  389999999999995 5667899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      ||+|.+|.-||+..+.+++.++..|+.||..||. ||.+ .+++|||-||||.|       ..+.+||+||||+|
T Consensus       549 YceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~-YLNE-ikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151|consen  549 YCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALK-YLNE-IKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             ecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhc-cCCCeeeeccCCccEEEecCcccceeEeeecchhh
Confidence            9999999999999899999999999999999999 9997 78899999999999       56779999999987

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=4.3e-17  Score=187.29  Aligned_cols=142  Identities=21%  Similarity=0.325  Sum_probs=116.2

Q ss_pred             HHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEc-------
Q 038969          532 KITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-------  599 (678)
Q Consensus       532 ~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-------  599 (678)
                      +...+|+  ++||+||||.||+++.+.||+.+|||++.... ........+|+..  +++|||||+++..+.+       
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~  555 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTV  555 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccc
Confidence            4445565  58999999999999999999999999997653 3334567788887  5999999998862100       


Q ss_pred             --------------------------------------------------------------------------------
Q 038969          600 --------------------------------------------------------------------------------  599 (678)
Q Consensus       600 --------------------------------------------------------------------------------  599 (678)
                                                                                                      
T Consensus       556 ~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~  635 (1351)
T KOG1035|consen  556 LEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSD  635 (1351)
T ss_pred             ccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------C--------CeeEEEEecCCCCCHHHhhcCCCCC-CHHHHHHHHHHHHHHHHHhHh
Q 038969          600 ------------------------D--------TNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFD  646 (678)
Q Consensus       600 ------------------------~--------~~~~LV~Ey~~~GsL~~~L~~~~~l-~~~~~l~ia~~ia~gL~~yLH  646 (678)
                                              +        ..+||-||||+.-.|+++++..... .-...++++++|+.||. |+|
T Consensus       636 ~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLa-YIH  714 (1351)
T KOG1035|consen  636 SEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLA-YIH  714 (1351)
T ss_pred             cCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHH-HHH
Confidence                                    0        1257889999998888888765443 46777999999999999 999


Q ss_pred             cCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          647 QGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       647 ~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +   .+||||||||.|    ++..|||+|||+|..
T Consensus       715 ~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  715 D---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             h---CceeeccCCcceeEEcCCCCeeecccccchh
Confidence            9   899999999999    899999999999975

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.69  E-value=1.1e-16  Score=166.61  Aligned_cols=134  Identities=21%  Similarity=0.297  Sum_probs=115.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|+...+++.||||++..... .......+|+..  .++ |+|++++++++..++..++||||+ +|
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~   82 (283)
T cd07830           4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EG   82 (283)
T ss_pred             heeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CC
Confidence            4689999999999999976788999999875422 122233456555  477 999999999999999999999999 88


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++.+++.++.|+++||. |||+   .+++|+||+|+|    +++.+||+|||+++
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          83 NLYQLMKDRKGKPFSESVIRSIIYQILQGLA-HIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             CHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCChhhEEEcCCCCEEEeecccce
Confidence            999999765  37899999999999999999 9999   899999999999    78899999999886

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.69  E-value=2e-16  Score=166.59  Aligned_cols=134  Identities=20%  Similarity=0.307  Sum_probs=112.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCC--------eeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT--------NMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~--------~~~L  605 (678)
                      .+.||+|+||.||++....+++.||||.+.....  .....+.+|+..  .++||||++++++|....        ..++
T Consensus        17 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l   96 (310)
T cd07865          17 LAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYL   96 (310)
T ss_pred             EEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEE
Confidence            4689999999999999887899999999865321  223345667766  489999999999986644        3599


Q ss_pred             EEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||+.+ +|.+++... ..+++.+++.++.|+++||+ |||+   .+++|+||||+|    .++.+||+|||+++
T Consensus        97 v~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          97 VFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLY-YIHR---NKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             EEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHEEECCCCcEEECcCCCcc
Confidence            9999974 888888754 47899999999999999999 9999   899999999999    78899999999885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.68  E-value=1.8e-16  Score=167.48  Aligned_cols=135  Identities=17%  Similarity=0.234  Sum_probs=114.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....+|+.||+|.++.....  ....+.+|+..  .++|+|++++++++...  +..++||||+.
T Consensus        12 ~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~   91 (309)
T cd07845          12 LNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE   91 (309)
T ss_pred             eeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC
Confidence            36799999999999999878999999998754221  12345667766  48999999999998654  56899999997


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      + +|.+++... ..+++.++..++.|+++||+ |||+   .+++||||||+|    +.+.+||+|||+++.
T Consensus        92 ~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          92 Q-DLASLLDNMPTPFSESQVKCLMLQLLRGLQ-YLHE---NFIIHRDLKVSNLLLTDKGCLKIADFGLART  157 (309)
T ss_pred             C-CHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCEEECccceeee
Confidence            4 898888753 67999999999999999999 9999   889999999999    778999999998863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.68  E-value=3.5e-16  Score=165.49  Aligned_cols=133  Identities=23%  Similarity=0.302  Sum_probs=115.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|++|.||+|+...++..+|+|.+...   .....+++.+|+..  .++|+|++++++++......++||||+. |
T Consensus        21 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   99 (308)
T cd06634          21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-G   99 (308)
T ss_pred             HheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-C
Confidence            6799999999999998878889999998643   22334567778776  4899999999999999999999999996 6


Q ss_pred             CHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.. ...+++.+++.++.|++.||. |||+   .+++||||+|+|    .++.+||+|||+++
T Consensus       100 ~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~-~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  163 (308)
T cd06634         100 SASDLLEVHKKPLQEVEIAAVTHGALQGLA-YLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSAS  163 (308)
T ss_pred             CHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHhEEECCCCcEEECCcccce
Confidence            88887753 356899999999999999999 9999   899999999999    77889999999876

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.68  E-value=2.4e-16  Score=164.54  Aligned_cols=135  Identities=19%  Similarity=0.210  Sum_probs=112.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||++....+++.||+|.+.... ......+.+|+..  .+ .|+||+++++++......+++|||+.. 
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~-   87 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDI-   87 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC-
Confidence            367999999999999998788999999987543 2345678888776  35 499999999999988999999999864 


Q ss_pred             CHHHhh---c--CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHL---S--GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L---~--~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.++.   .  ....+++..+.+++.|+++||+ |||+.  .+|+||||||+|    .++.+||+|||+|+
T Consensus        88 ~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  156 (288)
T cd06616          88 SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALN-YLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISG  156 (288)
T ss_pred             CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhH
Confidence            554432   2  2367999999999999999999 99973  479999999999    77889999999986

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.68  E-value=5e-16  Score=164.74  Aligned_cols=133  Identities=23%  Similarity=0.300  Sum_probs=115.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+|+...+|+.||+|.+....   ....+.+..|+..  .++|+|++++++++.+....++||||+. |
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  105 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-G  105 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-C
Confidence            56999999999999987788999999987532   2234567778776  4899999999999999999999999996 5


Q ss_pred             CHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.. ...+++.+++.++.|++.||+ |||+   .+++||||+|+|    +++.+||+|||++.
T Consensus       106 ~l~~~l~~~~~~l~~~~~~~~~~qi~~al~-~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~  169 (313)
T cd06633         106 SASDLLEVHKKPLQEVEIAAITHGALQGLA-YLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSAS  169 (313)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCChhhEEECCCCCEEEeecCCCc
Confidence            88887764 367999999999999999999 9999   899999999999    77889999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.68  E-value=1.3e-16  Score=171.09  Aligned_cols=133  Identities=17%  Similarity=0.277  Sum_probs=114.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~Ey  609 (678)
                      +.||+|+||.||+++...+++.||||.+...  .......+..|+..  .++|+||+++++++...     ...++||||
T Consensus        11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~   90 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYEL   90 (337)
T ss_pred             EEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeC
Confidence            6899999999999998878999999998753  22334556677766  48999999999988643     357999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +. ++|.+++.....+++..+..++.|+++||. |||+   .+++||||||+|    .++.+||+|||+++
T Consensus        91 ~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  156 (337)
T cd07858          91 MD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLK-YIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             CC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEEcCCCCEEECcCcccc
Confidence            96 699999987778999999999999999999 9999   899999999999    77889999999986

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.68  E-value=2.3e-16  Score=166.98  Aligned_cols=132  Identities=19%  Similarity=0.113  Sum_probs=111.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+|.|+++.||++  ..+++.||||++...  .....+.+..|+..  .++|+||+++++++...+..+++|||+++|+
T Consensus         8 ~~~~~~~~v~~~~~--~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           8 KCFEDLMIVHLAKH--KPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             HhhcCCceEEEEEe--cCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            33455555555555  447899999998754  33455678888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||.+.
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~  149 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALD-YIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSV  149 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCcceEEEecCCceEEecCccce
Confidence            99999753  56899999999999999999 9999   899999999999    77899999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.68  E-value=1.8e-16  Score=169.33  Aligned_cols=139  Identities=17%  Similarity=0.250  Sum_probs=116.6

Q ss_pred             HHHhhh--hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeE
Q 038969          532 KITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMG  604 (678)
Q Consensus       532 ~~t~~f--~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~  604 (678)
                      .++++|  .+.||+|+||.||++....+++.||||.+...  .....+.+..|+.+  .++|||++++++++.. ....+
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   86 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIY   86 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEE
Confidence            344444  37899999999999998878999999988642  22234567778777  4899999999999865 56789


Q ss_pred             EEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          605 LIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+||+ +++|.++++. ..+++..+..++.|+++||+ |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        87 lv~e~~-~~~L~~~~~~-~~~~~~~~~~~~~ql~~aL~-~LH~---~~iiH~dl~p~Nili~~~~~~~l~dfg~~~  156 (328)
T cd07856          87 FVTELL-GTDLHRLLTS-RPLEKQFIQYFLYQILRGLK-YVHS---AGVVHRDLKPSNILINENCDLKICDFGLAR  156 (328)
T ss_pred             EEeehh-ccCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEeECCCCCEEeCcccccc
Confidence            999999 5699998875 46889999999999999999 9999   899999999999    77889999999886

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.68  E-value=2.1e-16  Score=161.50  Aligned_cols=135  Identities=21%  Similarity=0.286  Sum_probs=118.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||++....+++.+|+|.+....  .....++..|+..  .++|+||+++++++......++||||++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFG   84 (256)
T ss_pred             eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCC
Confidence            467999999999999987788999999987542  3345567777776  488999999999999999999999999999


Q ss_pred             CHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++..    ...+++..++.++.|+++||+ |||+   .+++||||+|+|    +++.+||+|||+++
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~  151 (256)
T cd08530          85 DLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQ-ALHE---QKILHRDLKSANILLVANDLVKIGDLGISK  151 (256)
T ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHhh---CCcccCCCCcceEEEecCCcEEEeeccchh
Confidence            99999865    257899999999999999999 9999   899999999999    77889999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.68  E-value=2.7e-16  Score=169.66  Aligned_cols=132  Identities=24%  Similarity=0.334  Sum_probs=112.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~E  608 (678)
                      +.||+|+||.||++....+|+.||+|.+...  .....+++.+|+.+  .++|+||+++++++...      ...++|||
T Consensus        22 ~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  101 (353)
T cd07850          22 KPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVME  101 (353)
T ss_pred             EEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEe
Confidence            6899999999999999878999999998643  23334566677776  48999999999988543      35799999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+. |+|.+.+...  +++.++..++.|+++||+ |||.   .+|+||||||+|    .++.+||+|||+++.
T Consensus       102 ~~~-~~l~~~~~~~--l~~~~~~~~~~ql~~aL~-~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  167 (353)
T cd07850         102 LMD-ANLCQVIQMD--LDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  167 (353)
T ss_pred             ccC-CCHHHHHhhc--CCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHEEECCCCCEEEccCcccee
Confidence            996 5899888753  899999999999999999 9999   899999999999    788999999999873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.68  E-value=1.4e-16  Score=161.82  Aligned_cols=124  Identities=20%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             CCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcC
Q 038969          544 GGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG  621 (678)
Q Consensus       544 G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~  621 (678)
                      |.+|.||+++...+++.+|+|.+....     .+..|...  ...|||++++++++...+..++||||+++|+|.+++..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            789999999998889999999997643     22233322  25699999999999999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          622 ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       622 ~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ...+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.++++|||+++
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~  133 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALD-ALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWS  133 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHEEEcCCCCEEEecccchh
Confidence            677999999999999999999 9999   899999999999    78889999999764

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.68  E-value=1.9e-16  Score=169.68  Aligned_cols=134  Identities=15%  Similarity=0.225  Sum_probs=114.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+|+.||+|.++... ......+..|+..  .++|+||+++++++...     ...++|+||
T Consensus        10 ~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~   89 (336)
T cd07849          10 LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQEL   89 (336)
T ss_pred             EEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehh
Confidence            378999999999999988789999999987532 2334567778777  48999999999987543     357999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++ +|.+++.. ..+++..+..++.|+++||+ |||+   .+|+||||||+|    ..+.+||+|||+++.
T Consensus        90 ~~~-~l~~~~~~-~~l~~~~~~~i~~ql~~aL~-~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  155 (336)
T cd07849          90 MET-DLYKLIKT-QHLSNDHIQYFLYQILRGLK-YIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARI  155 (336)
T ss_pred             ccc-CHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHEEECCCCCEEECcccceee
Confidence            974 89888865 57999999999999999999 9999   899999999999    778999999999863

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.68  E-value=1.7e-16  Score=164.67  Aligned_cols=134  Identities=18%  Similarity=0.267  Sum_probs=118.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|+...+++.+|+|.+....  ....+.+..|+..  .++|+|++++++++...+..++||||++ +
T Consensus         4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~   82 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-M   82 (282)
T ss_pred             ehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-c
Confidence            367999999999999998779999999998653  2234567777766  4889999999999999999999999998 5


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.++++++.|+++||+ |||+   .+|+||||+|+|    +++.+||+|||+++
T Consensus        83 ~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~  146 (282)
T cd07829          83 DLKKYLDKRPGPLSPNLIKSIMYQLLRGLA-YCHS---HRILHRDLKPQNILINRDGVLKLADFGLAR  146 (282)
T ss_pred             CHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCChheEEEcCCCCEEEecCCccc
Confidence            999999875 57999999999999999999 9999   899999999999    77899999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.68  E-value=3.8e-16  Score=162.50  Aligned_cols=135  Identities=21%  Similarity=0.275  Sum_probs=113.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--h---cCCCCcccEEEEEEcCCe-----eEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--I---VHHKNLTTLVGYCDEDTN-----MGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~---l~H~NIv~l~g~~~~~~~-----~~L  605 (678)
                      .+.||+|+||.||+|+.+.+++.||+|++.....  .....+.+|+..  .   +.|+|++++++++...+.     .++
T Consensus         4 ~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l   83 (287)
T cd07838           4 LAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTL   83 (287)
T ss_pred             EEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEE
Confidence            3679999999999999986789999999975322  223455566654  2   469999999999987776     999


Q ss_pred             EEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          606 IYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|||+. ++|.+++...  ..+++.+++.++.|+++||+ |||+   .+++|+||+|+|    +++.+||+|||+++.
T Consensus        84 ~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~-~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          84 VFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVD-FLHS---HRIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             Eehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCChhhEEEccCCCEEEeccCccee
Confidence            999997 4899988753  35899999999999999999 9999   899999999999    778999999998753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.67  E-value=2.7e-16  Score=175.65  Aligned_cols=136  Identities=23%  Similarity=0.356  Sum_probs=116.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEc-----CCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDE-----DTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~-----~~~~~LV~E  608 (678)
                      |.++||+|.+|.||+++.+++++.+|||++..... ...+.+.|..+   ..+|||++.++|++..     ++++|||||
T Consensus        23 i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVME  101 (953)
T KOG0587|consen   23 IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVME  101 (953)
T ss_pred             EEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEee
Confidence            45899999999999999998999999999876532 22344444444   3789999999999853     568999999


Q ss_pred             cCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||.+|+..|++++-  ..+.|..+..|++++++||. +||.   ..+||||||-.|    .++.|||+|||++.+
T Consensus       102 fC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~-HLH~---nkviHRDikG~NiLLT~e~~VKLvDFGvSaQ  172 (953)
T KOG0587|consen  102 FCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLA-HLHN---NKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  172 (953)
T ss_pred             ccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHH-HHhh---cceeeecccCceEEEeccCcEEEeeeeeeee
Confidence            99999999998754  67999999999999999999 9999   889999999999    899999999998763

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=7.4e-18  Score=165.17  Aligned_cols=135  Identities=19%  Similarity=0.319  Sum_probs=116.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcC-----CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDED-----TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~-----~~~~LV~E  608 (678)
                      ++.||-|+||.||...+.++|+.||.|++..-  +-...+.+.+|+.++  .+|.|+++.++.-...     ++.|+++|
T Consensus        58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TE  137 (449)
T KOG0664|consen   58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTE  137 (449)
T ss_pred             CCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHH
Confidence            36899999999999999999999999998653  334457788888884  8999999998876543     35789999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .|.. +|...+-....|+...+.-+..||++||. |||+   .+|.||||||.|    .+..+|||||||||.
T Consensus       138 LmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLK-YLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLARv  205 (449)
T KOG0664|consen  138 LMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLK-YLHT---ANILHRDIKPGNLLVNSNCILKICDFGLART  205 (449)
T ss_pred             HHHh-hhhheeccCCCCCcchhhhhHHHHHhhhH-HHhh---cchhhccCCCccEEeccCceEEecccccccc
Confidence            9965 89888887788999999999999999999 9999   899999999999    888999999999983

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.67  E-value=3.9e-16  Score=153.43  Aligned_cols=133  Identities=16%  Similarity=0.151  Sum_probs=100.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh--h------------------------HHHHHHHHHH--hcCCCCc
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--G------------------------YKQFQAEVQY--IVHHKNL  590 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~------------------------~~~f~~Ev~~--~l~H~NI  590 (678)
                      ..||+|++|.||+|... +|+.||||+++.....  .                        ...+..|...  .+.|+++
T Consensus         3 ~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           3 GCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             ceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            57999999999999987 8999999999764210  0                        1112345544  4778887


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcE
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIV  667 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~v  667 (678)
                      .....+...  ..+|||||++++++.........++..+..+++.|++.+|. ++|+.  .+|+||||||.|   .++.+
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~-~lH~~--~givHrDlkP~NIll~~~~~  156 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMR-RLYQE--AGLVHGDLSEYNILYHDGKP  156 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHH-HHHHh--CCEecCCCChhhEEEECCCE
Confidence            554444333  24899999998865443222356788999999999999999 99973  589999999999   77899


Q ss_pred             EEEeeCCccc
Q 038969          668 KLITFSIIKN  677 (678)
Q Consensus       668 kI~DFGlar~  677 (678)
                      +|+|||+|+.
T Consensus       157 ~liDFG~a~~  166 (190)
T cd05145         157 YIIDVSQAVE  166 (190)
T ss_pred             EEEEccccee
Confidence            9999999874

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.67  E-value=1.5e-16  Score=169.64  Aligned_cols=134  Identities=18%  Similarity=0.277  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC-----eeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT-----NMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~-----~~~LV~E  608 (678)
                      .+.||+|++|.||+|+....++.||+|.+....  ....+.+.+|+..  .++|+||+++++++....     ..++|||
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e   84 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTE   84 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEec
Confidence            468999999999999987678999999987643  3345678888777  489999999999987765     7899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |++ ++|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||.|    .++.+||+|||+++
T Consensus        85 ~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~-~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~~  151 (330)
T cd07834          85 LME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLK-YLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLAR  151 (330)
T ss_pred             chh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEcccCceE
Confidence            998 589999987678999999999999999999 9999   899999999999    77899999999886

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.67  E-value=4.1e-16  Score=166.72  Aligned_cols=134  Identities=18%  Similarity=0.186  Sum_probs=112.9

Q ss_pred             hhhcccCCceEEEEEEEccC--CEEEEEEEeccC--chhhHHHHHHHHHHh--c-CCCCcccEEEEEEcC----CeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFN--GTQVAVKMLSAS--SVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDED----TNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~--g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~----~~~~LV  606 (678)
                      .+.||+|+||.||++.....  +..||+|.+...  .....+.+.+|+..+  + +|+||+++++.+...    ...+++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~   84 (332)
T cd07857           5 IKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLY   84 (332)
T ss_pred             EEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEE
Confidence            46899999999999998756  789999998753  222345677787763  4 699999999976432    457889


Q ss_pred             EecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          607 YEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +||+. ++|.+++.....+++..++.++.|++.||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        85 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          85 EELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLK-YIHS---ANVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             Eeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence            99986 699999987788999999999999999999 9999   899999999999    78889999999986

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.66  E-value=1.4e-16  Score=163.70  Aligned_cols=136  Identities=21%  Similarity=0.256  Sum_probs=113.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC-----chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-----SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-----~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||++.....+..+++|.++..     ......++..|+..  .++||||+++++++.+....++||||
T Consensus         4 i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (260)
T cd08222           4 LQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEY   83 (260)
T ss_pred             eeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEe
Confidence            347899999999999988655556666666542     12233455566655  48999999999999988899999999


Q ss_pred             CCCCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      +++++|.+++..    ...+++.+++.++.|+++||+ |||+   .+++|+||+|+|   .+..+||+|||+++
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~i~h~~l~~~nili~~~~~~l~d~g~~~  153 (260)
T cd08222          84 CEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVH-YMHQ---RRILHRDLKAKNIFLKNNLLKIGDFGVSR  153 (260)
T ss_pred             CCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHH-HHHH---cCccccCCChhheEeecCCEeecccCcee
Confidence            999999998853    257999999999999999999 9999   899999999999   66779999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.66  E-value=4.7e-16  Score=167.04  Aligned_cols=132  Identities=18%  Similarity=0.277  Sum_probs=111.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~E  608 (678)
                      +.||+|+||.||+|....+|+.||||.+....  ......+.+|+..  .++|+||+++++++...      ...++|+|
T Consensus        21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e  100 (342)
T cd07879          21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMP  100 (342)
T ss_pred             EEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEec
Confidence            68999999999999987688999999986531  2223457778777  48999999999998654      34699999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+.. +|.+++.  ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus       101 ~~~~-~l~~~~~--~~~~~~~~~~~~~qi~~aL~-~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~  166 (342)
T cd07879         101 YMQT-DLQKIMG--HPLSEDKVQYLVYQMLCGLK-YIHS---AGIIHRDLKPGNLAVNEDCELKILDFGLARH  166 (342)
T ss_pred             cccc-CHHHHHc--CCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEeeCCCCcC
Confidence            9974 8887764  46899999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.66  E-value=2.9e-16  Score=168.72  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=114.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--------------C
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--------------T  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--------------~  601 (678)
                      .+.||+|+||.||+|....+|+.||+|.+........+.+.+|+.+  .++|+||+++++++...              .
T Consensus        10 ~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   89 (342)
T cd07854          10 LRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELN   89 (342)
T ss_pred             EEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccc
Confidence            3689999999999999987899999999977665556778888877  48999999999776543              3


Q ss_pred             eeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          602 NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       602 ~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      ..++||||++ ++|.+++.. ..+++..++.++.|+++||+ |||+   .+|+||||||+|     ++..+||+|||+++
T Consensus        90 ~~~lv~e~~~-~~L~~~~~~-~~l~~~~~~~~~~qi~~aL~-~LH~---~givH~dikp~Nili~~~~~~~kl~dfg~~~  163 (342)
T cd07854          90 SVYIVQEYME-TDLANVLEQ-GPLSEEHARLFMYQLLRGLK-YIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGLAR  163 (342)
T ss_pred             eEEEEeeccc-ccHHHHHHc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEEcCCCceEEECCcccce
Confidence            5789999997 599998865 46899999999999999999 9999   899999999999     45678999999885

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.66  E-value=5.2e-16  Score=162.95  Aligned_cols=135  Identities=18%  Similarity=0.234  Sum_probs=113.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--h-cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--I-VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|++|.||+|.....++.||||.++... .....++..|+..  . ..|+||++++++|......+++|||++ +
T Consensus        20 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~   98 (296)
T cd06618          20 LGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-T   98 (296)
T ss_pred             eeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-c
Confidence            478999999999999997669999999997643 2334556666654  3 459999999999999999999999985 4


Q ss_pred             CHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.. ...+++..+.+++.|+++||+ |||+.  ++|+||||+|+|    +++.+||+|||+++
T Consensus        99 ~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~-~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~  163 (296)
T cd06618          99 CLDKLLKRIQGPIPEDILGKMTVAIVKALH-YLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISG  163 (296)
T ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHhh--CCEecCCCcHHHEEEcCCCCEEECccccch
Confidence            77776654 357999999999999999999 99962  479999999999    78899999999875

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.65  E-value=4.2e-16  Score=161.81  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=116.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|++|.||++....+++.+|+|.+......  ....+..|+..  .++|+||+++++++..+...++|+||+++ +
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~   83 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-D   83 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC-C
Confidence            5799999999999998778999999998765322  34567777766  48899999999999999999999999975 8


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.+++.++.|+++||. |||+   .+|+|+||||+|    +++.+||+|||.++
T Consensus        84 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~  146 (283)
T cd05118          84 LYKLIKDRQRGLPESLIKSYLYQLLQGLA-FCHS---HGILHRDLKPENLLINTEGVLKLADFGLAR  146 (283)
T ss_pred             HHHHHHhhcccCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeE
Confidence            98888764 58999999999999999999 9999   899999999999    77899999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=6.7e-18  Score=163.96  Aligned_cols=134  Identities=20%  Similarity=0.373  Sum_probs=113.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhh-HHHHHHHHHH--hcCCCCcccEEEEEEc--------CCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQG-YKQFQAEVQY--IVHHKNLTTLVGYCDE--------DTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~-~~~f~~Ev~~--~l~H~NIv~l~g~~~~--------~~~~~LV  606 (678)
                      ..||+|.||.||+++.+..|+.||+|+.-... ..+ -....+|+.+  .++|+|++.++..|..        +...+||
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylV  102 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLV  102 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeee
Confidence            47999999999999998788999998764321 111 2344677777  4899999999998843        3348999


Q ss_pred             EecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          607 YEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++|+. +|...|... ..++..++.+++.++..||. |+|.   ..|+|||+|+.|    .++.+||+|||+||.
T Consensus       103 f~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~-~iHr---~kilHRDmKaaNvLIt~dgilklADFGlar~  173 (376)
T KOG0669|consen  103 FDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLY-YIHR---NKILHRDMKAANVLITKDGILKLADFGLARA  173 (376)
T ss_pred             HHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHH-HHHH---hhHHhhcccHhhEEEcCCceEEeeccccccc
Confidence            999988 999999876 78999999999999999999 9999   889999999999    789999999999974

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.65  E-value=2.3e-16  Score=149.45  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=116.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|++|.|-+-++..+|+..|||++... ..+..++...|+.+.   ...|.+|.++|...+....+|.||.|.. +
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~t-S  130 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDT-S  130 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhh-h
Confidence            5699999999999988889999999999875 445667788888773   6799999999999999999999999975 7


Q ss_pred             HHHhhc----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLS----GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |..+-+    ....+++.-+-+||..|.+||. |||+.  ..+||||+||+|    .++++||||||++-
T Consensus       131 ldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~-~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG  197 (282)
T KOG0984|consen  131 LDKFYRKVLKKGGTIPEDVLGKIAVSVVHALE-FLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISG  197 (282)
T ss_pred             HHHHHHHHHhcCCcCchHHhhHhHHHHHHHHH-HHHHH--hhhhhccCCcceEEEccCCcEEEcccccce
Confidence            776654    3378999999999999999999 99995  469999999999    88999999999863

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.65  E-value=3.2e-16  Score=176.88  Aligned_cols=133  Identities=12%  Similarity=0.110  Sum_probs=103.4

Q ss_pred             hhhcccCCceEEEEEEEccCC-EEEEEE------------------EeccCchhhHHHHHHHHHH--hcCCCCcccEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG-TQVAVK------------------MLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGY  596 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g-~~VAVK------------------~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~  596 (678)
                      .+.||+|+||.||+|..+... ...++|                  .+.. .......+++|+.+  .++|+||++++++
T Consensus       153 i~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~l~~~  231 (501)
T PHA03210        153 IDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKA-GSRAAIQLENEILALGRLNHENILKIEEI  231 (501)
T ss_pred             EeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhc-chHHHHHHHHHHHHHHhCCCCCcCcEeEE
Confidence            378999999999998764221 112222                  1111 11234567888877  3899999999999


Q ss_pred             EEcCCeeEEEEecCCCCCHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcE
Q 038969          597 CDEDTNMGLIYEFMAKGNLEEHLSGA-----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIV  667 (678)
Q Consensus       597 ~~~~~~~~LV~Ey~~~GsL~~~L~~~-----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~v  667 (678)
                      +...+..++|+|++. ++|.+++...     ......++.+|+.|++.||+ |||+   .+||||||||+|    .++.+
T Consensus       232 ~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~-yLH~---~gIiHrDLKP~NILl~~~~~v  306 (501)
T PHA03210        232 LRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVE-YIHD---KKLIHRDIKLENIFLNCDGKI  306 (501)
T ss_pred             EEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCE
Confidence            999999999999995 5888877542     23446678899999999999 9999   899999999999    78899


Q ss_pred             EEEeeCCcc
Q 038969          668 KLITFSIIK  676 (678)
Q Consensus       668 kI~DFGlar  676 (678)
                      ||+|||+|+
T Consensus       307 kL~DFGla~  315 (501)
T PHA03210        307 VLGDFGTAM  315 (501)
T ss_pred             EEEeCCCce
Confidence            999999986

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.65  E-value=2.4e-16  Score=168.50  Aligned_cols=134  Identities=19%  Similarity=0.268  Sum_probs=116.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh--------HHHHHHHHHHh--cC---CCCcccEEEEEEcCCeeEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--------YKQFQAEVQYI--VH---HKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~--------~~~f~~Ev~~~--l~---H~NIv~l~g~~~~~~~~~L  605 (678)
                      +.+|+|+||.|+.|.++.+..+|+||++.++..-.        .-..-.|++++  ++   |+||++++.++++.+..||
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl  646 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDYYYL  646 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCeeEE
Confidence            68999999999999999888899999997653211        11234567663  54   9999999999999999999


Q ss_pred             EEecC-CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFM-AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~-~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +||-. ++-+|.+++..+..+++.++..|.+||+.|++ +||+   .+|||||||-+|    .++-+||+|||-|.
T Consensus       647 ~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~-hlh~---~~ivhrdikdenvivd~~g~~klidfgsaa  718 (772)
T KOG1152|consen  647 ETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIK-HLHD---QGIVHRDIKDENVIVDSNGFVKLIDFGSAA  718 (772)
T ss_pred             EecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccc-cccc---cCceecccccccEEEecCCeEEEeeccchh
Confidence            99976 45689999998899999999999999999999 9999   999999999999    88999999999763

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=3.3e-16  Score=168.52  Aligned_cols=134  Identities=16%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||-|+||+|.+++-......+|+|.+.+.+.   ......++|-.++  .+.+-||+|+-.+.+++.+|.||||++||
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGG  714 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGG  714 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCc
Confidence            579999999999998764556899999977543   2233345555554  67889999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++..+|-....+.+..+..++.+++-|++ +.|.   .++|||||||.|    .++++||+|||||.
T Consensus       715 DmMSLLIrmgIFeE~LARFYIAEltcAie-sVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  715 DMMSLLIRMGIFEEDLARFYIAELTCAIE-SVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCT  777 (1034)
T ss_pred             cHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHh---ccceecccCccceEEccCCceeeeeccccc
Confidence            99999987788889988999999999999 9999   999999999999    89999999999985

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.64  E-value=6.1e-17  Score=158.64  Aligned_cols=145  Identities=18%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             ccccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHHh---cCCCCcccEEEEEE
Q 038969          523 RKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQYI---VHHKNLTTLVGYCD  598 (678)
Q Consensus       523 ~~fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~---l~H~NIv~l~g~~~  598 (678)
                      ..|+-++|+..     ..||.|.||+|++-.++..|+..|||+++.... .+.++++.|....   -+.||||+++|.+.
T Consensus        59 ~~F~~~~Lqdl-----g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F  133 (361)
T KOG1006|consen   59 HTFTSDNLQDL-----GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALF  133 (361)
T ss_pred             cccccchHHHH-----HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhh
Confidence            34666666654     469999999999999998999999999987543 4567788888773   45899999999999


Q ss_pred             cCCeeEEEEecCCCCCHHHhhc-----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEE
Q 038969          599 EDTNMGLIYEFMAKGNLEEHLS-----GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKL  669 (678)
Q Consensus       599 ~~~~~~LV~Ey~~~GsL~~~L~-----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI  669 (678)
                      .++..||.||.|.- +|..+-+     .+..+++.-.-+|+.-..+||. ||.+.  ..|||||+||+|    ..+.+||
T Consensus       134 ~EGdcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~-yLK~~--lkiIHRDvKPSNILldr~G~vKL  209 (361)
T KOG1006|consen  134 SEGDCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALD-YLKEE--LKIIHRDVKPSNILLDRHGDVKL  209 (361)
T ss_pred             cCCceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHH-HHHHH--hhhhhccCChhheEEecCCCEee
Confidence            99999999999964 6655443     2367899999999999999999 99986  469999999999    8899999


Q ss_pred             EeeCCcc
Q 038969          670 ITFSIIK  676 (678)
Q Consensus       670 ~DFGlar  676 (678)
                      ||||++-
T Consensus       210 CDFGIcG  216 (361)
T KOG1006|consen  210 CDFGICG  216 (361)
T ss_pred             ecccchH
Confidence            9999874

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.63  E-value=2.4e-15  Score=150.07  Aligned_cols=135  Identities=23%  Similarity=0.341  Sum_probs=120.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|++|.||++....+++.+|+|.+...... ..+.+.+|+..  .++|+|++++++++......++++||+++++
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   83 (225)
T smart00221        4 GKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGD   83 (225)
T ss_pred             eeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCC
Confidence            46799999999999999866899999999876544 56778888776  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCC-CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANT-LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~-l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++..... +++..+..++.+++++|. +||.   .+++|+|++++|    ....++|+|||+++
T Consensus        84 L~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~  146 (225)
T smart00221       84 LFDYLRKKGGKLSEEEARFYLRQILEALE-YLHS---LGIVHRDLKPENILLGMDGLVKLADFGLAR  146 (225)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceee
Confidence            9999987655 899999999999999999 9999   799999999999    66899999999876

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.63  E-value=2e-15  Score=158.57  Aligned_cols=134  Identities=16%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             hhhcccCCceEEEEEEEccC---CEEEEEEEeccCchhhHHH-----------HHHHHHH--hcCCCCcccEEEEEEcCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASSVQGYKQ-----------FQAEVQY--IVHHKNLTTLVGYCDEDT  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~~~~~~~~-----------f~~Ev~~--~l~H~NIv~l~g~~~~~~  601 (678)
                      .+.||+|+||.||+|....+   +..+|+|+..........+           ...+...  .+.|+|++++++++....
T Consensus        17 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~   96 (294)
T PHA02882         17 DKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSFKR   96 (294)
T ss_pred             eeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeEec
Confidence            47899999999999998644   4567777654332111001           1111111  268999999999875543


Q ss_pred             ----eeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeC
Q 038969          602 ----NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFS  673 (678)
Q Consensus       602 ----~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFG  673 (678)
                          ..++++|++.. ++.+.+......++..++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||
T Consensus        97 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~iiHrDiKp~Nill~~~~~~~l~DFG  171 (294)
T PHA02882         97 CRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLE-YIHE---HGISHGDIKPENIMVDGNNRGYIIDYG  171 (294)
T ss_pred             CCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCcEEEEEcC
Confidence                34678887754 67777665455789999999999999999 9999   899999999999    77899999999


Q ss_pred             Ccc
Q 038969          674 IIK  676 (678)
Q Consensus       674 lar  676 (678)
                      +|+
T Consensus       172 la~  174 (294)
T PHA02882        172 IAS  174 (294)
T ss_pred             Cce
Confidence            986

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.63  E-value=1.1e-15  Score=160.99  Aligned_cols=134  Identities=19%  Similarity=0.258  Sum_probs=112.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcC--------CeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDED--------TNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--------~~~~L  605 (678)
                      .+.||+|++|.||+|....+++.+|||.+.....  .....+.+|++.  .++|+||+++++++.+.        ...++
T Consensus        13 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~l   92 (311)
T cd07866          13 LGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYM   92 (311)
T ss_pred             EEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEE
Confidence            3689999999999999887889999999865422  123456677766  48999999999987543        34699


Q ss_pred             EEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+||+.. +|.+.+... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        93 v~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~-~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          93 VTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGIN-YLHE---NHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             EEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCEEECcCccch
Confidence            9999975 787777643 57999999999999999999 9999   899999999999    78899999999986

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.62  E-value=1e-15  Score=164.54  Aligned_cols=133  Identities=18%  Similarity=0.281  Sum_probs=114.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe------eEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN------MGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~------~~LV~E  608 (678)
                      +.||+|++|.||+|+...+++.||||.+...  .....+.+.+|+..  .++|+|++++++++...+.      .++|+|
T Consensus        21 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  100 (343)
T cd07851          21 SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTH  100 (343)
T ss_pred             EEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEe
Confidence            6899999999999999877899999998653  22334556677776  4899999999998765554      899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+ +++|.+++.. ..+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus       101 ~~-~~~L~~~~~~-~~l~~~~~~~~~~ql~~aL~-~LH~---~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~  167 (343)
T cd07851         101 LM-GADLNNIVKC-QKLSDDHIQFLVYQILRGLK-YIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARH  167 (343)
T ss_pred             cC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEECCCCCEEEcccccccc
Confidence            99 5699999875 57999999999999999999 9999   899999999999    788999999999863

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.62  E-value=1.3e-15  Score=173.46  Aligned_cols=133  Identities=13%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             hhhcccCCceEEEEEEEccC----CEEEEEEEeccCchhhHHHHHHHHHHhcCCCCcccEEEE------EEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFN----GTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY------CDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~----g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~H~NIv~l~g~------~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|.+..+    +..||||++......  +.+..|......+.+++.++..      +....+.+|||
T Consensus       137 ~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~--e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV~  214 (566)
T PLN03225        137 GKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV--EIWMNERVRRACPNSCADFVYGFLEPVSSKKEDEYWLVW  214 (566)
T ss_pred             eEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh--HHHHHHHHHhhchhhHHHHHHhhhcccccccCCceEEEE
Confidence            47899999999999999866    789999998653221  1122221111122222221111      34567899999


Q ss_pred             ecCCCCCHHHhhcCCC-C-------------------CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----
Q 038969          608 EFMAKGNLEEHLSGAN-T-------------------LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----  662 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~-~-------------------l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----  662 (678)
                      ||+++|+|.+++.... .                   .....+..|+.|+++||+ |||+   .+|+||||||+|     
T Consensus       215 ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~-yLH~---~gIiHRDLKP~NILl~~  290 (566)
T PLN03225        215 RYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALD-GLHS---TGIVHRDVKPQNIIFSE  290 (566)
T ss_pred             EecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHH-HHHH---CCEEeCcCCHHHEEEeC
Confidence            9999999999987431 0                   112345679999999999 9999   899999999999     


Q ss_pred             CCCcEEEEeeCCcc
Q 038969          663 HKNIVKLITFSIIK  676 (678)
Q Consensus       663 ~~~~vkI~DFGlar  676 (678)
                      +.+.+||+|||+|+
T Consensus       291 ~~~~~KL~DFGlA~  304 (566)
T PLN03225        291 GSGSFKIIDLGAAA  304 (566)
T ss_pred             CCCcEEEEeCCCcc
Confidence            35789999999997

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1e-16  Score=164.98  Aligned_cols=139  Identities=21%  Similarity=0.253  Sum_probs=117.8

Q ss_pred             hhhhhcccCCceEEEEEEEccCCEEEEEEEeccCch-h--hHHHHHHHHHH--h-cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-Q--GYKQFQAEVQY--I-VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~--~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +|..+||+|.||.|.++..+-..+.+|||+++..-. |  ..+--..|-+.  + -+-|.+++|+.+++..+.+|.||||
T Consensus       352 nFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEy  431 (683)
T KOG0696|consen  352 NFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEY  431 (683)
T ss_pred             ceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEE
Confidence            678999999999999998764556899999987522 1  11112223222  2 4678999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcccC
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKNN  678 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~~  678 (678)
                      +.+|+|.-+++.-..+.+..++-+|.+||-||- |||+   .+||.||||..|    .++++||+|||++||+
T Consensus       432 vnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLF-FLh~---kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEn  500 (683)
T KOG0696|consen  432 VNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLF-FLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  500 (683)
T ss_pred             ecCchhhhHHHHhcccCCchhhhhhHHHHHHhh-hhhc---CCeeeeeccccceEeccCCceEeeeccccccc
Confidence            999999999987778889999999999999999 9999   999999999999    8999999999999985

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.62  E-value=1.8e-16  Score=183.06  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=118.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      ..||.|.||.||.|....+|...|||-+....  ....+....|+.+  +++|||+|+.+|+-.+++..+|.||||++|+
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~Gs 1320 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGS 1320 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCc
Confidence            47999999999999998789999999886542  2234456667666  5999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+.+......++.....+..|++.|++ |||+   .+||||||||.|    .++.+|++|||-|+.
T Consensus      1321 La~ll~~gri~dE~vt~vyt~qll~gla-~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645|consen 1321 LASLLEHGRIEDEMVTRVYTKQLLEGLA-YLHE---HGIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHh---cCceecCCCccceeeecCCcEEeecccceeE
Confidence            9999987666788888888999999999 9999   999999999999    778999999998874

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.61  E-value=3.9e-16  Score=162.88  Aligned_cols=135  Identities=20%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||-++.+..|+.+|.|.+....   .++....++|-++  +++.+.||.+--.+..++.+++|+..|.||
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNGG  270 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNGG  270 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecCC
Confidence            79999999999999998899999999986642   2333334445444  588999999998899999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.-+|...  ..+++..++-+|.+|+-||+ +||+   .+||.||+||+|    ++++++|+|.|||-+
T Consensus       271 DLkfHiyn~g~~gF~e~ra~FYAAEi~cGLe-hlH~---~~iVYRDLKPeNILLDd~GhvRISDLGLAve  336 (591)
T KOG0986|consen  271 DLKFHIYNHGNPGFDEQRARFYAAEIICGLE-HLHR---RRIVYRDLKPENILLDDHGHVRISDLGLAVE  336 (591)
T ss_pred             ceeEEeeccCCCCCchHHHHHHHHHHHhhHH-HHHh---cceeeccCChhheeeccCCCeEeeccceEEe
Confidence            999999754  58999999999999999999 9999   899999999999    999999999999864

>PRK10345 hypothetical protein; Provisional

Probab=99.61  E-value=4.9e-15  Score=147.14  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-----CCCCcccEEEEEEcCC---e-eEEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-----HHKNLTTLVGYCDEDT---N-MGLIY  607 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-----~H~NIv~l~g~~~~~~---~-~~LV~  607 (678)
                      +.||+|+||.||.  ++.++.. +||++........+++.+|+..+  +     .||||++++|++.+..   . ..+|+
T Consensus         8 ~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~   84 (210)
T PRK10345          8 SPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIA   84 (210)
T ss_pred             ceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEe
Confidence            6899999999996  4435444 79988765444567789998873  4     6899999999998753   3 33789


Q ss_pred             ec--CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHH-HHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCcc
Q 038969          608 EF--MAKGNLEEHLSGANTLTWEARLRIATEAAQGS-HSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey--~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL-~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGlar  676 (678)
                      ||  +++|+|.+++... .+++.  ..++.+++.++ + |||+   .+||||||||+|        ....++|+||+-++
T Consensus        85 e~~G~~~~tL~~~l~~~-~~~e~--~~~~~~~L~~l~~-yLh~---~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345         85 DFDGKPSITLTEFAEQC-RYEED--VAQLRQLLKKLKR-YLLD---NRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             cCCCCcchhHHHHHHcc-cccHh--HHHHHHHHHHHHH-HHHH---CCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            99  6689999999763 45555  45678888888 8 9999   899999999999        22379999954443

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.61  E-value=1e-14  Score=142.81  Aligned_cols=132  Identities=25%  Similarity=0.435  Sum_probs=117.5

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHH
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEE  617 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~  617 (678)
                      ||+|.+|.||++....+++.+++|++...... ..+.+.+|+..  .++|++++++++++......++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            68999999999998755899999999876432 34678888877  4899999999999999899999999999999999


Q ss_pred             hhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-CCcEEEEeeCCcc
Q 038969          618 HLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-KNIVKLITFSIIK  676 (678)
Q Consensus       618 ~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-~~~vkI~DFGlar  676 (678)
                      ++... ..+++..+..++.+++++|+ +||+   .+++|+||+|.|    . ...++|+|||.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~  141 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLE-YLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSK  141 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence            99865 57999999999999999999 9999   799999999999    5 6899999999876

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-15  Score=148.10  Aligned_cols=135  Identities=14%  Similarity=0.272  Sum_probs=116.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEE-EEcCCeeEEEEecCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGY-CDEDTNMGLIYEFMAK  612 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~-~~~~~~~~LV~Ey~~~  612 (678)
                      ..+.+|+|.||.+-++.++...+.+++|.+...- ...++|.+|..-   +-.|.||+.-++. ++..+....++||+|.
T Consensus        28 I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~  106 (378)
T KOG1345|consen   28 INKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPR  106 (378)
T ss_pred             HHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCcc
Confidence            3578999999999999998888899999987643 345789999766   4679999987765 4556778899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      |+|.+-+.. ..+.+....+++.|++.||+ |+|+   ..+||||||.+|      +..++||||||+.+.
T Consensus       107 gdL~snv~~-~GigE~~~K~v~~ql~SAi~-fMHs---knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen  107 GDLRSNVEA-AGIGEANTKKVFAQLLSAIE-FMHS---KNLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             chhhhhcCc-ccccHHHHHHHHHHHHHHHH-Hhhc---cchhhcccccceEEEecCCccEEEeeecccccc
Confidence            999998765 56888899999999999999 9999   899999999999      777999999999763

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.59  E-value=5.8e-15  Score=148.53  Aligned_cols=128  Identities=19%  Similarity=0.296  Sum_probs=115.2

Q ss_pred             CceEEEEEEEccCCEEEEEEEeccCchhh-HHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcC
Q 038969          545 GFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG  621 (678)
Q Consensus       545 ~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~  621 (678)
                      +||.||+|....+|+.+|+|++....... .+.+.+|++.  .++|+|++++++++......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999998668999999998765444 6788888887  48999999999999999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          622 ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       622 ~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ...+++..++.++.+++++|. |||+   .+++|+||+|+|    +++.++|+|||++.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~-~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~  135 (244)
T smart00220       81 RGRLSEDEARFYARQILSALE-YLHS---NGIIHRDLKPENILLDEDGHVKLADFGLAR  135 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHH-HHHH---cCeecCCcCHHHeEECCCCcEEEcccccee
Confidence            656899999999999999999 9999   899999999999    67899999999875

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.59  E-value=2.6e-16  Score=170.86  Aligned_cols=135  Identities=19%  Similarity=0.282  Sum_probs=123.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.+|.|.+|.|||++....++..|||+++.......+-.+.|+.++  .+|+|||.++|-+-..+..++.||||.+|+|+
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQ  100 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQ  100 (829)
T ss_pred             eeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCccc
Confidence            6899999999999999989999999999887666666677777663  89999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +.-+...++++.++...+++..+||+ |||.   .+-+|||||-.|    +.+.+|++|||.+-+
T Consensus       101 diy~~TgplselqiayvcRetl~gl~-ylhs---~gk~hRdiKGanilltd~gDvklaDfgvsaq  161 (829)
T KOG0576|consen  101 DIYHVTGPLSELQIAYVCRETLQGLK-YLHS---QGKIHRDIKGANILLTDEGDVKLADFGVSAQ  161 (829)
T ss_pred             ceeeecccchhHHHHHHHhhhhccch-hhhc---CCcccccccccceeecccCceeecccCchhh
Confidence            98887789999999999999999999 9999   888999999999    899999999998753

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.58  E-value=1.4e-14  Score=144.52  Aligned_cols=128  Identities=14%  Similarity=0.238  Sum_probs=106.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--h------hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--Q------GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~------~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.||+|++|.||+|..  .|..|++|.......  .      ....+.+|+..  .++|+++.....++......+++||
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            4689999999999987  678899998654321  1      12346677666  3788888888878777788899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      |+++++|.+++...   .+ ++..++.+++++|. ++|+   .+++|||++|.|   ..+.++|+|||+++
T Consensus        80 ~~~G~~L~~~~~~~---~~-~~~~i~~~i~~~l~-~lH~---~~i~H~Dl~p~Nil~~~~~~~liDf~~a~  142 (211)
T PRK14879         80 YIEGEPLKDLINSN---GM-EELELSREIGRLVG-KLHS---AGIIHGDLTTSNMILSGGKIYLIDFGLAE  142 (211)
T ss_pred             EeCCcCHHHHHHhc---cH-HHHHHHHHHHHHHH-HHHh---CCcccCCCCcccEEEECCCEEEEECCccc
Confidence            99999999998753   22 88999999999999 9999   899999999999   77889999999886

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=8.5e-15  Score=156.38  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=114.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+||.+.||++... +.+.+|+|++...  +.+....|..|+..+   -.|.+||+|++|-..++.+||||||=+. 
T Consensus       367 k~iG~GGSSkV~kV~~s-~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~-  444 (677)
T KOG0596|consen  367 KQIGSGGSSKVFKVLNS-DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGDI-  444 (677)
T ss_pred             HhhcCCCcceeeeeecC-CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecccc-
Confidence            68999999999999876 6678888887543  556678899999883   5599999999999999999999998754 


Q ss_pred             CHHHhhcCCC-C-CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGAN-T-LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~-~-l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      +|...|+.+. . ..| .+..+..|+++++. ++|+   .+|||.||||.|   -.|.+||+|||+|+.
T Consensus       445 DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~-~IH~---~gIVHSDLKPANFLlVkG~LKLIDFGIA~a  508 (677)
T KOG0596|consen  445 DLNKILKKKKSIDPDW-FLKFYWKQMLLAVK-TIHQ---HGIVHSDLKPANFLLVKGRLKLIDFGIANA  508 (677)
T ss_pred             cHHHHHHhccCCCchH-HHHHHHHHHHHHHH-HHHH---hceeecCCCcccEEEEeeeEEeeeechhcc
Confidence            9999998762 2 334 77889999999999 9999   999999999999   999999999999975

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.56  E-value=5.9e-15  Score=145.23  Aligned_cols=143  Identities=15%  Similarity=0.223  Sum_probs=116.2

Q ss_pred             ccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh-c--CCCCcccEEEEEEcC
Q 038969          525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI-V--HHKNLTTLVGYCDED  600 (678)
Q Consensus       525 fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~-l--~H~NIv~l~g~~~~~  600 (678)
                      ....||+..     ..||.|..|.|++++.+..|...|||.+.... ..+.++....+..+ .  ..|.||+.+||+...
T Consensus        89 ~dindl~~l-----~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n  163 (391)
T KOG0983|consen   89 ADINDLENL-----GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITN  163 (391)
T ss_pred             cChHHhhhH-----HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeC
Confidence            344555543     46999999999999999889999999997753 34456666666663 2  369999999999999


Q ss_pred             CeeEEEEecCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          601 TNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ...++.||.|.. .+..+|+. ++++++.-+-++...+.+||. ||.+.  ++|||||+||+|    +.+++|+||||++
T Consensus       164 ~dV~IcMelMs~-C~ekLlkrik~piPE~ilGk~tva~v~AL~-YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIs  239 (391)
T KOG0983|consen  164 TDVFICMELMST-CAEKLLKRIKGPIPERILGKMTVAIVKALY-YLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGIS  239 (391)
T ss_pred             chHHHHHHHHHH-HHHHHHHHhcCCchHHhhhhhHHHHHHHHH-HHHHh--cceeecccCccceEEccCCCEEeeccccc
Confidence            999999999954 45555543 267888888999999999999 99983  789999999999    8999999999986


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      -
T Consensus       240 G  240 (391)
T KOG0983|consen  240 G  240 (391)
T ss_pred             c
Confidence            4

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.56  E-value=1.4e-14  Score=140.27  Aligned_cols=135  Identities=21%  Similarity=0.313  Sum_probs=111.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHhcC-CCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVH-HKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      .+.||+|.||.+|.|..-.+|.+||||+-+....+..-..++.+...++ -..|..+..|..++..-.||||.+ +-+|+
T Consensus        20 vrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLE   98 (341)
T KOG1163|consen   20 VRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLE   98 (341)
T ss_pred             EEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHH
Confidence            3789999999999999888999999999876544433333333433444 457777777888889999999988 67999


Q ss_pred             HhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          617 EHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      +.+.-. ..++..+.+-.|-|+..-++ |+|.   .++|||||||+|       ....+.++||||||.
T Consensus        99 dLfnfC~R~ftmkTvLMLaDQml~RiE-yvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKk  163 (341)
T KOG1163|consen   99 DLFNFCSRRFTMKTVLMLADQMLSRIE-YVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKK  163 (341)
T ss_pred             HHHHHHhhhhhHHhHHHHHHHHHHHHH-HHHh---hccccccCCccceeeccccccceEEEEeccchhh
Confidence            988654 67899999999999999999 9999   889999999999       566799999999985

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.54  E-value=2.5e-14  Score=141.25  Aligned_cols=124  Identities=18%  Similarity=0.257  Sum_probs=99.2

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .||+|++|.||+|..  +|..|++|.......        ....++.+|+..  .++|+++.....++......++||||
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            489999999999985  678999998654311        112456677766  37777766555566666778999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      +++++|.+++.....       .++.+++++|. +||+   .+++|||++|.|   +.+.++++|||+|+
T Consensus        79 ~~g~~l~~~~~~~~~-------~~~~~i~~~l~-~lH~---~gi~H~Dl~~~Nil~~~~~~~liDfg~a~  137 (199)
T TIGR03724        79 IEGKPLKDVIEEGND-------ELLREIGRLVG-KLHK---AGIVHGDLTTSNIIVRDDKLYLIDFGLGK  137 (199)
T ss_pred             ECCccHHHHHhhcHH-------HHHHHHHHHHH-HHHH---CCeecCCCCcceEEEECCcEEEEECCCCc
Confidence            999999998764221       88999999999 9999   899999999999   78899999999986

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00090 RIO RIO-like kinase

Probab=99.54  E-value=3.8e-14  Score=143.95  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=99.6

Q ss_pred             hhhcccCCceEEEEEE-EccCCEEEEEEEeccCchh------------------------hHHHHHHHHHH--hcCC--C
Q 038969          538 EKVIGKGGFGTVYHGY-LEFNGTQVAVKMLSASSVQ------------------------GYKQFQAEVQY--IVHH--K  588 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~-~~~~g~~VAVK~l~~~~~~------------------------~~~~f~~Ev~~--~l~H--~  588 (678)
                      .+.||+|++|.||+|. ...+|+.||||.+......                        ....+..|+..  .+.+  .
T Consensus        33 ~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i  112 (237)
T smart00090       33 GGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGV  112 (237)
T ss_pred             CCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4789999999999998 4458999999998754210                        01224556655  2444  3


Q ss_pred             CcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCC-ccccCCCCCC---CC
Q 038969          589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPH-ICESSSSSNP---HK  664 (678)
Q Consensus       589 NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~-iiHrDlk~~N---~~  664 (678)
                      .+.+.+++    ...+|||||+++++|...+.....+...+...++.|++++|+ +||+   .+ |+||||||+|   .+
T Consensus       113 ~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~g~iiH~Dikp~NIli~~  184 (237)
T smart00090      113 PVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMR-KLYK---EGELVHGDLSEYNILVHD  184 (237)
T ss_pred             CCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHH-HHHh---cCCEEeCCCChhhEEEEC
Confidence            34455543    235899999999888776544455666778899999999999 9999   88 9999999999   77


Q ss_pred             CcEEEEeeCCcc
Q 038969          665 NIVKLITFSIIK  676 (678)
Q Consensus       665 ~~vkI~DFGlar  676 (678)
                      +.++|+|||.|+
T Consensus       185 ~~i~LiDFg~a~  196 (237)
T smart00090      185 GKVVIIDVSQSV  196 (237)
T ss_pred             CCEEEEEChhhh
Confidence            789999999987

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.53  E-value=3.9e-14  Score=161.19  Aligned_cols=126  Identities=16%  Similarity=0.239  Sum_probs=102.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--c------hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--S------VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~------~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|.+.  +..+++|+....  .      ....+.+.+|++.  .++|++++....++......++||
T Consensus       338 ~~~iG~G~~g~Vy~~~~~--~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~  415 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYL--GRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVM  415 (535)
T ss_pred             cceeccCCcEEEEEEeec--CccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEE
Confidence            478999999999999874  444444443211  1      1123457788877  489999999888888777889999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      ||+++++|.+++.        .+..++.+++++|. +||+   .+++||||||+|   +++.++|+|||+|+.
T Consensus       416 E~~~g~~L~~~l~--------~~~~~~~~i~~~L~-~lH~---~giiHrDlkp~NILl~~~~~~liDFGla~~  476 (535)
T PRK09605        416 EYIGGKDLKDVLE--------GNPELVRKVGEIVA-KLHK---AGIVHGDLTTSNFIVRDDRLYLIDFGLGKY  476 (535)
T ss_pred             EecCCCcHHHHHH--------HHHHHHHHHHHHHH-HHHh---CCCccCCCChHHEEEECCcEEEEeCccccc
Confidence            9999999999875        46789999999999 9999   899999999999   888999999999873

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.52  E-value=1.8e-14  Score=160.64  Aligned_cols=130  Identities=20%  Similarity=0.280  Sum_probs=104.7

Q ss_pred             hhhcccCCceE-EEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGT-VYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~-Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++++|.|..|+ ||+|..  +|++||||++-.+.   ..-..+||..+   -.|||||++++.-.+++..||..|.|.. 
T Consensus       514 ~eilG~Gs~Gt~Vf~G~y--e~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-  587 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVY--EGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-  587 (903)
T ss_pred             HHHcccCCCCcEEEEEee--CCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-
Confidence            36889988865 699988  78999999986432   23346787774   5699999999998899999999999964 


Q ss_pred             CHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---------CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---------HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---------~~~~vkI~DFGlar~  677 (678)
                      +|.+++...    ....-...+.+..|+++||+ +||.   .+||||||||.|         ...+++|+|||++|.
T Consensus       588 sL~dlie~~~~d~~~~~~i~~~~~l~q~~~Gla-HLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  588 SLQDLIESSGLDVEMQSDIDPISVLSQIASGLA-HLHS---LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             hHHHHHhccccchhhcccccHHHHHHHHHHHHH-HHHh---cccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            999999863    11111445678889999999 9999   789999999999         235799999999984

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.50  E-value=1.8e-14  Score=138.52  Aligned_cols=129  Identities=16%  Similarity=0.273  Sum_probs=110.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcC--CeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDED--TNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~--~~~~LV~Ey~~~  612 (678)
                      .+.+|+|.++.||.|..-.+.+.++||+++.-   ..+...+|+.++  + .|+||++|+....+.  ....||+||..+
T Consensus        43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV---kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n  119 (338)
T KOG0668|consen   43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPV---KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNN  119 (338)
T ss_pred             HHHHcCccHhhHhcccccCCCceEEEeeechH---HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhcc
Confidence            36899999999999987667889999999864   346778888884  4 499999999998664  446899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      -+....-   ..|+-.++...+.++++||. |.|+   .+|+|||+||.|     +...++|+|+|||.
T Consensus       120 ~Dfk~ly---~tl~d~dIryY~~elLkALd-yCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGLAE  181 (338)
T KOG0668|consen  120 TDFKQLY---PTLTDYDIRYYIYELLKALD-YCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGLAE  181 (338)
T ss_pred             ccHHHHh---hhhchhhHHHHHHHHHHHHh-HHHh---cCcccccCCcceeeechhhceeeeeecchHh
Confidence            8877665   35888899999999999999 9999   999999999999     67789999999984

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.49  E-value=3.3e-14  Score=155.13  Aligned_cols=132  Identities=16%  Similarity=0.247  Sum_probs=113.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--h-cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--I-VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      |...+|.|+|+.|-++.....++..+||++.....+    -.+|+.+  + -+|+|++++.+.+.++.+.++|||.+.+|
T Consensus       326 ~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~----~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~  401 (612)
T KOG0603|consen  326 FREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD----NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGG  401 (612)
T ss_pred             cccccCCCCccceeeeeccccccchhheeccccccc----cccccchhhhhcCCCcceeecceecCCceeeeeehhcccc
Confidence            446799999999999999888899999999876222    2344433  3 67999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      -|.+.+....... .++..|+.+++.++. |||.   ++||||||||+|     +.++++|+|||.+++
T Consensus       402 ell~ri~~~~~~~-~e~~~w~~~lv~Av~-~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  402 ELLRRIRSKPEFC-SEASQWAAELVSAVD-YLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFGFWSE  465 (612)
T ss_pred             HHHHHHHhcchhH-HHHHHHHHHHHHHHH-HHHh---cCeeecCCChhheeecCCCCcEEEEEechhhh
Confidence            9888887654444 888899999999999 9999   999999999999     577899999999885

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.48  E-value=2.4e-13  Score=134.41  Aligned_cols=125  Identities=14%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch--h--------------------hHHHHHHHHHH--hcCCC--Cc
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--Q--------------------GYKQFQAEVQY--IVHHK--NL  590 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~--------------------~~~~f~~Ev~~--~l~H~--NI  590 (678)
                      ..+.||+|+||.||++... +|+.||||++.....  .                    ....+..|...  .++|+  .+
T Consensus        19 ~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v   97 (198)
T cd05144          19 LGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPV   97 (198)
T ss_pred             cCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCC
Confidence            3578999999999999886 899999998764320  0                    01124445544  35566  45


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      ++.++.    ...++||||+++++|.+....      ....+++.++++++. ++|+   .+|+||||||+|    +++.
T Consensus        98 ~~~~~~----~~~~lv~e~~~g~~L~~~~~~------~~~~~~~~~i~~~l~-~lh~---~gi~H~Dl~p~Nill~~~~~  163 (198)
T cd05144          98 PKPIDW----NRHAVVMEYIDGVELYRVRVL------EDPEEVLDEILEEIV-KAYK---HGIIHGDLSEFNILVDDDEK  163 (198)
T ss_pred             Cceeec----CCceEEEEEeCCcchhhcccc------ccHHHHHHHHHHHHH-HHHH---CCCCcCCCCcccEEEcCCCc
Confidence            555542    446899999999999876431      345678899999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      ++|+|||+|.
T Consensus       164 ~~liDfg~~~  173 (198)
T cd05144         164 IYIIDWPQMV  173 (198)
T ss_pred             EEEEECCccc
Confidence            9999999985

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=2.4e-14  Score=144.16  Aligned_cols=137  Identities=18%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHH--HHH-hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAE--VQY-IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~E--v~~-~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .++||+|.|+.|..++++...+.+|+|++++.-   .....-.+.|  +.. .-+||.+|.|+.++..+..++.|.||++
T Consensus       255 l~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv~  334 (593)
T KOG0695|consen  255 LRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVN  334 (593)
T ss_pred             eeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEec
Confidence            378999999999999998888999999997641   1122222222  222 4689999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcccC
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKNN  678 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~~  678 (678)
                      +|+|.-++..+..|+++.+..+..+|+.||. |||+   .+||.||||..|    ..+++||+|+|++||+
T Consensus       335 ggdlmfhmqrqrklpeeharfys~ei~lal~-flh~---rgiiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  335 GGDLMFHMQRQRKLPEEHARFYSAEICLALN-FLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             CcceeeehhhhhcCcHHHhhhhhHHHHHHHH-HHhh---cCeeeeeccccceEEccCCceeecccchhhcC
Confidence            9999999988888999999999999999999 9999   999999999999    8899999999999974

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.46  E-value=1.3e-13  Score=143.69  Aligned_cols=129  Identities=14%  Similarity=0.233  Sum_probs=113.4

Q ss_pred             hhcccCCceEEEEEEEcc---CCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEF---NGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ++||+|.|+.||++.+..   ..+.||+|.+...+...  ...+|++.   +.-+.||+++.++....+...+|+||+++
T Consensus        42 ~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~--ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H  119 (418)
T KOG1167|consen   42 NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPS--RILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEH  119 (418)
T ss_pred             ccccccchhhhhhhhHhhhccccceEeeeecccccCch--HHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCc
Confidence            689999999999999865   56789999998765443  45666666   36699999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      -...+++.+   ++..++..+.+.+.+||. ++|.   .+||||||||+|     ..+.-.|.|||||-
T Consensus       120 ~~f~~l~~~---l~~~~i~~Yl~~ll~Al~-~~h~---~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  120 DRFRDLYRS---LSLAEIRWYLRNLLKALA-HLHK---NGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             cCHHHHHhc---CCHHHHHHHHHHHHHHhh-hhhc---cCccccCCCccccccccccCCceEEechhHH
Confidence            999999875   789999999999999999 9999   999999999999     66778999999985

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.45  E-value=6.5e-13  Score=130.14  Aligned_cols=123  Identities=11%  Similarity=0.088  Sum_probs=97.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh----hHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ----GYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~----~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      ...|++|+||+||.+..  .+..++.+.++....-    ....|.+|++++  + +|+++++++++    +..+++|||+
T Consensus         7 ~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          7 NEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             ceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            36799999999997654  6788888888765431    123578888883  6 56889999886    4469999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC-CCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS-SSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl-k~~N----~~~~vkI~DFGlar~  677 (678)
                      ++.+|.+.+..       ....++.|++++|+ ++|.   .+|+|||| ||.|    +++.++|+|||+|+.
T Consensus        81 ~G~~L~~~~~~-------~~~~~~~qi~~~L~-~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~  141 (218)
T PRK12274         81 AGAAMYQRPPR-------GDLAYFRAARRLLQ-QLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVR  141 (218)
T ss_pred             cCccHHhhhhh-------hhHHHHHHHHHHHH-HHHH---CcCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence            99998765421       12457889999999 9999   89999999 7999    678899999999873

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.44  E-value=1.7e-13  Score=140.86  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=112.4

Q ss_pred             hhcccCCceEEEEEEEcc-----CCEEEEEEEeccCch-hhHHHHHHHHHHh--cCCCCcccEEEEEEc-CCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASSV-QGYKQFQAEVQYI--VHHKNLTTLVGYCDE-DTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~-~~~~~LV~Ey  609 (678)
                      .++-+|.||.||+|.++.     +.+.|-||.++.... -+...|..|...+  ++|||+.++.+++.+ ....+++|.+
T Consensus       290 ~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~  369 (563)
T KOG1024|consen  290 CLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPA  369 (563)
T ss_pred             hhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEec
Confidence            578899999999997752     223577888776533 3455677777664  789999999999965 5567899999


Q ss_pred             CCCCCHHHhhc-----CC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLS-----GA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~-----~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +.-|+|..||.     +.   +.++-.+.+.+|.|++.||+ |||.   .+|||.||.++|    +...+||+|=-|+|+
T Consensus       370 ~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~-hlh~---~~ViHkDiAaRNCvIdd~LqVkltDsaLSRD  445 (563)
T KOG1024|consen  370 TGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAME-HLHN---HGVIHKDIAARNCVIDDQLQVKLTDSALSRD  445 (563)
T ss_pred             cCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHH-HHHh---cCcccchhhhhcceehhheeEEeccchhccc
Confidence            99999999997     21   67888999999999999999 9999   999999999999    778999999888885

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.44  E-value=4.7e-13  Score=133.72  Aligned_cols=124  Identities=10%  Similarity=0.104  Sum_probs=97.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhH---HH------HHHHHHH--hcCCCCcccEEEEEEcC------
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY---KQ------FQAEVQY--IVHHKNLTTLVGYCDED------  600 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~---~~------f~~Ev~~--~l~H~NIv~l~g~~~~~------  600 (678)
                      .+++|.|+||.||....  ++..+|||.+........   ..      |++|+..  .+.|++|..+..++...      
T Consensus        36 ~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~  113 (232)
T PRK10359         36 IKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLR  113 (232)
T ss_pred             EEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccccccc
Confidence            37899999999999654  567899999976532221   12      5788665  58999999999885432      


Q ss_pred             --CeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          601 --TNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       601 --~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                        +..+|||||++|.+|.++..    ++.    ....+++++|. .+|+   .+++|||+||+|    +++ ++|+|||.
T Consensus       114 ~~~~~~lvmEyi~G~tL~~~~~----~~~----~~~~~i~~~l~-~lH~---~gi~H~Dikp~Nili~~~g-i~liDfg~  180 (232)
T PRK10359        114 YAHTYIMLIEYIEGVELNDMPE----ISE----DVKAKIKASIE-SLHQ---HGMVSGDPHKGNFIVSKNG-LRIIDLSG  180 (232)
T ss_pred             ccCCeEEEEEEECCccHHHhhh----ccH----HHHHHHHHHHH-HHHH---cCCccCCCChHHEEEeCCC-EEEEECCC
Confidence              35889999999999988742    232    34568999999 9999   899999999999    555 99999997


Q ss_pred             cc
Q 038969          675 IK  676 (678)
Q Consensus       675 ar  676 (678)
                      .+
T Consensus       181 ~~  182 (232)
T PRK10359        181 KR  182 (232)
T ss_pred             cc
Confidence            65

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.4e-14  Score=153.00  Aligned_cols=144  Identities=16%  Similarity=0.189  Sum_probs=120.0

Q ss_pred             ccHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEc
Q 038969          525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDE  599 (678)
Q Consensus       525 fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~  599 (678)
                      ..++|++.+     ..||-|+||.|=..+.......+|+|++++...   ...+....|-.+  ..+.+.||+|+-.+.+
T Consensus       417 v~l~dl~~i-----aTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd  491 (732)
T KOG0614|consen  417 VKLSDLKRI-----ATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRD  491 (732)
T ss_pred             cchhhhhhh-----hhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhcc
Confidence            444555443     369999999999998863444589999876532   222334445444  3789999999999999


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ....||.||-|-||.|-..|+++..++......++..+.+|++ |||.   .+||.|||||+|    .++-+||.|||+|
T Consensus       492 ~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfe-YLH~---k~iIYRDLKPENllLd~~Gy~KLVDFGFA  567 (732)
T KOG0614|consen  492 SKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFE-YLHR---KGIIYRDLKPENLLLDNRGYLKLVDFGFA  567 (732)
T ss_pred             chhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHH-HHHh---cCceeccCChhheeeccCCceEEeehhhH
Confidence            9999999999999999999999999999999999999999999 9999   999999999999    8899999999999


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      |.
T Consensus       568 Kk  569 (732)
T KOG0614|consen  568 KK  569 (732)
T ss_pred             HH
Confidence            84

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.41  E-value=7.1e-13  Score=141.27  Aligned_cols=134  Identities=16%  Similarity=0.219  Sum_probs=106.5

Q ss_pred             hhhcccCCceEEEEEEEccCC-EEEEEEEeccCchhhHHHHHHHHHH--hcC----CCCcccEEEEE-EcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG-TQVAVKMLSASSVQGYKQFQAEVQY--IVH----HKNLTTLVGYC-DEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g-~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~----H~NIv~l~g~~-~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||.+....++ ..+|+|............+..|+..  .+.    -+++..++... ......+|||+.
T Consensus        23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l  102 (322)
T KOG1164|consen   23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSL  102 (322)
T ss_pred             eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEec
Confidence            478999999999999986443 5799998876533222244445444  233    35888999888 477789999998


Q ss_pred             CCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CC----CcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HK----NIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~----~~vkI~DFGlar  676 (678)
                      + +.+|.++....  ..++..+.++|+.|+..+|+ +||+   .+++||||||.|     ..    ..+.|.|||+||
T Consensus       103 ~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~-~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen  103 L-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALE-DLHS---KGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             c-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHH-HHHh---cCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            7 67999987543  67999999999999999999 9999   999999999999     22    569999999998

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.41  E-value=9.5e-13  Score=133.18  Aligned_cols=133  Identities=18%  Similarity=0.287  Sum_probs=111.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .++||+|.||.++.|+...+++.||||.-...+..  -++..|.+.   +...++|...+-+-.++.+-.||+|.+ |-+
T Consensus        33 GkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~A--PQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPS  109 (449)
T KOG1165|consen   33 GKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEA--PQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPS  109 (449)
T ss_pred             ccccccCcceeeecccccccCceEEEEeccccCCc--chHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcC
Confidence            46899999999999998889999999987654321  233444433   467889999888888888889999998 669


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---------CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---------HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---------~~~~vkI~DFGlar~  677 (678)
                      |+++..-. ..++..+++.||.|+..-++ |+|+   ...|.|||||+|         +...+.|+|||+||+
T Consensus       110 LEDLFD~CgR~FSvKTV~miA~Qmi~rie-~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~  178 (449)
T KOG1165|consen  110 LEDLFDLCGRRFSVKTVAMIAKQMITRIE-YVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKE  178 (449)
T ss_pred             HHHHHHHhcCcccHHhHHHHHHHHHHHHH-HHHh---cceeecccCccceeecCCCCCCCceEEEEeccchhh
Confidence            99988644 67999999999999999999 9999   899999999999         456689999999996

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.39  E-value=5.5e-13  Score=137.35  Aligned_cols=133  Identities=11%  Similarity=0.202  Sum_probs=108.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CC-C----CcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HH-K----NLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H-~----NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      ...+|+|.||.|-.+.+...+..||||+++.-.... +.-+.|++.  .+ ++ |    -+|++.+|+.-.++.+||+|.
T Consensus        94 ~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYr-eAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfel  172 (415)
T KOG0671|consen   94 VDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYR-EAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFEL  172 (415)
T ss_pred             hhhhcCCcccceEEEeecCCCceehHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEec
Confidence            468999999999999998778899999998643321 223334443  23 22 2    377888899999999999999


Q ss_pred             CCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------------------------C
Q 038969          610 MAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------------------------H  663 (678)
Q Consensus       610 ~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------------------------~  663 (678)
                      | |-++.++|...  .+++..++..|+.|++++++ |||+   ..++|-||||+|                        +
T Consensus       173 l-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~-fLh~---~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~k  247 (415)
T KOG0671|consen  173 L-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVA-FLHD---LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLK  247 (415)
T ss_pred             c-ChhHHHHhccCCccccchHHHHHHHHHHHHHHH-HHHh---cceeecCCChheEEEeccceEEEeccCCccceeccCC
Confidence            9 44999999875  67899999999999999999 9999   899999999999                        2


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      ...+||+|||-|.
T Consensus       248 s~~I~vIDFGsAt  260 (415)
T KOG0671|consen  248 STAIKVIDFGSAT  260 (415)
T ss_pred             CcceEEEecCCcc
Confidence            3458999999876

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.38  E-value=2.4e-12  Score=119.75  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCC--CCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHH--KNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H--~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|.++.||++...  +..+++|.......  ...+..|+..  .++|  .++++++++....+..+++|||++++.
T Consensus         4 ~~i~~g~~~~v~~~~~~--~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           4 KLLKGGLTNRVYLLGTK--DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             eecccccccceEEEEec--CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            56899999999999874  47899999876543  4567777766  3554  589999998888888999999999887


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +..+       +......++.+++++|+ ++|.-...+++|+|++|+|    +.+.++++|||+++
T Consensus        80 ~~~~-------~~~~~~~~~~~~~~~l~-~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120          80 LDEV-------SEEEKEDIAEQLAELLA-KLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             cccC-------CHHHHHHHHHHHHHHHH-HHhCCCceEEEecCCCcceEEEECCcEEEEEeccccc
Confidence            7654       67788889999999999 9998544579999999999    66889999999886

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.38  E-value=1.7e-13  Score=138.12  Aligned_cols=131  Identities=23%  Similarity=0.289  Sum_probs=107.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc------CCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE------DTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~------~~~~~LV~E  608 (678)
                      +.+|.|.- .|..+.+.-.+++||+|.+...  ..+..+...+|...+  +.|+|+++++.++.-      -.+.|+|||
T Consensus        23 ~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e  101 (369)
T KOG0665|consen   23 KPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVME  101 (369)
T ss_pred             cccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHH
Confidence            45777776 6777766667889999988653  233445666776663  899999999999853      345899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||.. +|.+.+.  -.++-..+..|..|++.|+. |||+   .+|+||||||+|    .++.+||.|||+|+.
T Consensus       102 ~m~~-nl~~vi~--~elDH~tis~i~yq~~~~ik-~lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~ar~  167 (369)
T KOG0665|consen  102 LMDA-NLCQVIL--MELDHETISYILYQMLCGIK-HLHS---AGIIHRDLKPSNIVVNSDCTLKILDFGLART  167 (369)
T ss_pred             hhhh-HHHHHHH--HhcchHHHHHHHHHHHHHHH-HHHh---cceeecccCcccceecchhheeeccchhhcc
Confidence            9965 9998887  45788899999999999999 9999   999999999999    889999999999984

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=1.9e-12  Score=136.86  Aligned_cols=120  Identities=17%  Similarity=0.274  Sum_probs=99.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh----------cCCCCcccEEEEEEc----CCee
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI----------VHHKNLTTLVGYCDE----DTNM  603 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~----------l~H~NIv~l~g~~~~----~~~~  603 (678)
                      .++||-|.|++||++.+....+.||+|+.+... +-.+....||.++          ....+||+|+.+|..    +.+.
T Consensus        83 ~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HV  161 (590)
T KOG1290|consen   83 QRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHV  161 (590)
T ss_pred             EEeccccccceeEEEeeccCCeEEEEEEEehhh-HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEE
Confidence            478999999999999998888999999987542 2223445666652          123579999999964    5689


Q ss_pred             EEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC
Q 038969          604 GLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP  662 (678)
Q Consensus       604 ~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N  662 (678)
                      +||+|++ |-+|..++...  +.++...+.+||.||+.||. |||..|  +|||-||||+|
T Consensus       162 CMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLd-YLH~ec--gIIHTDlKPEN  218 (590)
T KOG1290|consen  162 CMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLD-YLHREC--GIIHTDLKPEN  218 (590)
T ss_pred             EEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH-HHHHhc--CccccCCCcce
Confidence            9999999 55899988754  78999999999999999999 999985  69999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.33  E-value=8.5e-12  Score=121.84  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=89.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchh--hHHHH----------------------HHHHHH--hcCC--CCc
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQF----------------------QAEVQY--IVHH--KNL  590 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--~~~~f----------------------~~Ev~~--~l~H--~NI  590 (678)
                      +.||+|+||.||+|... +|+.||||++......  ....+                      ..|...  .+++  ..+
T Consensus         3 ~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           3 GPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             cccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999987 8999999998753211  11111                      123222  1222  235


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCCCHHHh-hcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCc
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKGNLEEH-LSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNI  666 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~GsL~~~-L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~  666 (678)
                      .+.+++    ...++||||+++|.+... +.. .... .+..+++.+++.++. ++|..  .+|+||||||+|   .++.
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~-~~~~-~~~~~~~~~~~~~l~-~lh~~--~~ivH~Dl~p~Nili~~~~  152 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKD-VRLL-EDPEELYDQILELMR-KLYRE--AGLVHGDLSEYNILVDDGK  152 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhh-hhhc-ccHHHHHHHHHHHHH-HHhhc--cCcCcCCCChhhEEEECCc
Confidence            555543    246899999999543321 111 1111 677899999999999 99974  579999999999   7889


Q ss_pred             EEEEeeCCccc
Q 038969          667 VKLITFSIIKN  677 (678)
Q Consensus       667 vkI~DFGlar~  677 (678)
                      ++|+|||.|+.
T Consensus       153 ~~liDfg~a~~  163 (187)
T cd05119         153 VYIIDVPQAVE  163 (187)
T ss_pred             EEEEECccccc
Confidence            99999999864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.28  E-value=3.1e-11  Score=122.83  Aligned_cols=128  Identities=15%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             hhcc-cCCceEEEEEEEccCCEEEEEEEeccCc-------------hhhHHHHHHHHHH--hcCCCCc--ccEEEEEEcC
Q 038969          539 KVIG-KGGFGTVYHGYLEFNGTQVAVKMLSASS-------------VQGYKQFQAEVQY--IVHHKNL--TTLVGYCDED  600 (678)
Q Consensus       539 ~~IG-~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-------------~~~~~~f~~Ev~~--~l~H~NI--v~l~g~~~~~  600 (678)
                      .+|| .|+.|+||....  .+..++||.+....             ......+.+|+..  .++|+++  +..+++...+
T Consensus        37 ~~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            5787 899999999987  57889999885421             1122456677776  3777774  7778775432


Q ss_pred             C----eeEEEEecCCC-CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEe
Q 038969          601 T----NMGLIYEFMAK-GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLIT  671 (678)
Q Consensus       601 ~----~~~LV~Ey~~~-GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~D  671 (678)
                      .    ..+|||||+++ .+|.+++.. ..++..    .+.+++++|. +||+   .+|+||||||.|    .++.++|+|
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~-~~l~~~----~~~~i~~~l~-~lH~---~GI~HrDlkp~NILv~~~~~v~LID  185 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQE-APLSEE----QWQAIGQLIA-RFHD---AGVYHADLNAHNILLDPDGKFWLID  185 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhc-CCCCHH----HHHHHHHHHH-HHHH---CCCCCCCCCchhEEEcCCCCEEEEE
Confidence            2    23599999997 699998865 345543    3568899999 9999   899999999999    567899999


Q ss_pred             eCCccc
Q 038969          672 FSIIKN  677 (678)
Q Consensus       672 FGlar~  677 (678)
                      ||.++.
T Consensus       186 fg~~~~  191 (239)
T PRK01723        186 FDRGEL  191 (239)
T ss_pred             CCCccc
Confidence            998863

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=6e-12  Score=146.61  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=102.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHhcC---CCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVH---HKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~---H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      ++.||+|+||.||+|... +|+.||+|+-+....-+. =...++..+++   -+-|..+...+.-.+.-+||+||.+.|+
T Consensus       703 ~~e~G~g~y~~vy~a~~~-~~~~~alK~e~P~~~WEf-YI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gt  780 (974)
T KOG1166|consen  703 SKEIGEGSYGSVYVATHS-NGKLVALKVEKPPNPWEF-YICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGT  780 (974)
T ss_pred             EeeeccccceEEEEeecC-CCcEEEEEeecCCCceee-eehHHHHHhhchhhhcchHHHHHHHccCCcceeeeecccccc
Confidence            478999999999999988 699999999876532110 00111111222   1223333334445677889999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----------CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----------HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----------~~~~vkI~DFGlar  676 (678)
                      |.+++...+.++|...+.++.|+++-++ .||.   .+|||+||||+|           +...++|+|||-+-
T Consensus       781 lld~~N~~~~m~e~lv~~~~~qml~ive-~lH~---~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166|consen  781 LLDLINTNKVMDEYLVMFFSCQMLRIVE-HLHA---MGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             HHHhhccCCCCCchhhhHHHHHHHHHHH-HHHh---cceecccCCcceeEeecccCCCCcccceEEEecccce
Confidence            9999998889999999999999999999 9999   899999999999           44569999999763

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=2.4e-10  Score=132.06  Aligned_cols=151  Identities=15%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             EeecCCCCC---CCCccCCC--CeeeecCCCcccCCceeeeCCCc-c----Ccc--ccccccceeeecCCC-CCceeeec
Q 038969            3 SIDCGIPHD---SSYTDKIT--GINYVSDSTFIDTGVINNISSEY-S----SNK--TLERQFLNVRSFPEG-IRNCYTLK   69 (678)
Q Consensus         3 sidCG~~~~---~~y~d~~t--~i~~~~D~~fi~~G~~~~i~~~~-~----~~~--~~~~~~~tlR~Fp~g-~rnCY~l~   69 (678)
                      .|+||.+..   ..|-|+.-  ...|.+|..|.. +....++... .    ..+  .+...|+|-|.+-++ ..-.|+++
T Consensus       195 R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~-~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~~  273 (623)
T PLN03150        195 RLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGS-GSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMD  273 (623)
T ss_pred             EEEecCcccccccCCCCCcccCccccCcCcccCC-CcccccccccccccccCCCccChHHHhhhhccccCCCCceEEEee
Confidence            689997532   23544433  567999998863 3222222111 0    000  123467788777642 46789999


Q ss_pred             CCCCCcceEEEEEeecccC-CCCCCCceEEEEecCcEEEE-EEecC----CCccEEEEEEEeccCCceeEEEEecCCCCc
Q 038969           70 PSSGDVKFLIRARFMYGNY-DGQNIIPSFSLLLEADVWDS-VNLKD----ASGIVTKEIIHAPKKNYMYVCLVNTGSGTP  143 (678)
Q Consensus        70 ~~~g~~~YliR~~F~ygny-d~~~~~p~Fdl~~g~~~w~~-v~~~~----~~~~~~~e~i~~~~~~~~~vClv~~~~g~P  143 (678)
                      +.++. +|+||.-|-==.. ......-+||+++.+..+.. +++..    ...+++.+....+.+..+.|.|+.+....|
T Consensus       274 v~~~~-~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p  352 (623)
T PLN03150        274 VDPNR-NYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA  352 (623)
T ss_pred             cCCCC-CEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence            87777 9999999842211 11112347999999976543 23211    124566676655556778999998754459


Q ss_pred             eeeeeeeeecCC
Q 038969          144 FISALELRPLKN  155 (678)
Q Consensus       144 fIS~lElr~l~~  155 (678)
                      ||++||+..+..
T Consensus       353 ilNaiEI~~~~~  364 (623)
T PLN03150        353 IINAIEVFEIIT  364 (623)
T ss_pred             eeeeeeeeeccc
Confidence            999999988875

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.24  E-value=6.1e-12  Score=133.62  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=114.5

Q ss_pred             cHhhHHHHHhhhhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c------CCCCcccEEEEE
Q 038969          526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V------HHKNLTTLVGYC  597 (678)
Q Consensus       526 s~~el~~~t~~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l------~H~NIv~l~g~~  597 (678)
                      -+.|+........-..|+|-|++|.+|.....|..||||++...... .+.=++|++++  +      ..-|.++|+-.|
T Consensus       425 ~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F  503 (752)
T KOG0670|consen  425 RIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHF  503 (752)
T ss_pred             ehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHh
Confidence            34455444333345679999999999999878899999999865322 22334555552  2      234788999999


Q ss_pred             EcCCeeEEEEecCCCCCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEE
Q 038969          598 DEDTNMGLIYEFMAKGNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKL  669 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~~GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI  669 (678)
                      ..++++|||+|-+.- +|.+.|+.-   ..|....+..++.|+..||. .|..   .+|+|.||||.|     ....+||
T Consensus       504 ~hknHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALk-lLK~---c~vlHaDIKPDNiLVNE~k~iLKL  578 (752)
T KOG0670|consen  504 KHKNHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALK-LLKK---CGVLHADIKPDNILVNESKNILKL  578 (752)
T ss_pred             hhcceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHH-HHHh---cCeeecccCccceEeccCcceeee
Confidence            999999999998865 999999753   56889999999999999999 9998   789999999999     6678999


Q ss_pred             EeeCCcc
Q 038969          670 ITFSIIK  676 (678)
Q Consensus       670 ~DFGlar  676 (678)
                      ||||-|-
T Consensus       579 CDfGSA~  585 (752)
T KOG0670|consen  579 CDFGSAS  585 (752)
T ss_pred             ccCcccc
Confidence            9999774

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.23  E-value=8.9e-11  Score=122.10  Aligned_cols=132  Identities=24%  Similarity=0.395  Sum_probs=112.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh---hHHHHHHHHHH--hcCCC-CcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ---GYKQFQAEVQY--IVHHK-NLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~---~~~~f~~Ev~~--~l~H~-NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||.|+||.||++...   ..+|+|.+......   ....|.+|+..  .+.|+ +++++...+......++++||+.
T Consensus         5 ~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   81 (384)
T COG0515           5 LRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVD   81 (384)
T ss_pred             EEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCC
Confidence            367899999999999875   78999999765332   36678888876  36766 79999999977777899999999


Q ss_pred             CCCHHHhhcCCC---CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-cEEEEeeCCcc
Q 038969          612 KGNLEEHLSGAN---TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-IVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~---~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-~vkI~DFGlar  676 (678)
                      ++++.+++....   .+.......++.|++.++. |+|.   .+++|||+||+|    ... .+|++|||+++
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~  150 (384)
T COG0515          82 GGSLEDLLKKIGRKGPLSESEALFILAQILSALE-YLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLAK  150 (384)
T ss_pred             CCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHeeecCCCCeEEEeccCcce
Confidence            999998877653   7999999999999999999 9999   789999999999    444 69999999886

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.16  E-value=1.1e-10  Score=129.09  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=91.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhH------------------------------H----------HHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY------------------------------K----------QFQ  578 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~------------------------------~----------~f~  578 (678)
                      +.||.|++|.||+|+++ +|+.||||+.+.......                              +          +|.
T Consensus       123 ~plasaSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            57999999999999997 899999999866421110                              0          133


Q ss_pred             HHHHHh------cCCCCcccEEEEEE-cCCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHH-HHHhHhcCC
Q 038969          579 AEVQYI------VHHKNLTTLVGYCD-EDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQG-SHSAFDQGC  649 (678)
Q Consensus       579 ~Ev~~~------l~H~NIv~l~g~~~-~~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~g-L~~yLH~~~  649 (678)
                      .|+..+      ++|.+-+.+-..+. .....+|||||++|++|.+++... ...   .+.+++.++++. +. .+|.  
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~---~~~~ia~~~~~~~l~-ql~~--  275 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGL---DRKALAENLARSFLN-QVLR--  275 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCC---CHHHHHHHHHHHHHH-HHHh--
Confidence            444331      33333333333332 244579999999999998876531 122   345677777774 56 8888  


Q ss_pred             CCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          650 CPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       650 ~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                       .+++|+|++|.|    +++.++++|||+++.
T Consensus       276 -~g~~H~D~hPgNilv~~~g~i~liDfG~~~~  306 (437)
T TIGR01982       276 -DGFFHADLHPGNIFVLKDGKIIALDFGIVGR  306 (437)
T ss_pred             -CCceeCCCCcccEEECCCCcEEEEeCCCeeE
Confidence             899999999999    788999999999863

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.95  E-value=1.5e-09  Score=132.73  Aligned_cols=121  Identities=36%  Similarity=0.660  Sum_probs=89.4

Q ss_pred             cccchHHHHhhhcCCCCCCchhhHHHHHHHHHhhC----CCCCCCC-CCCCCcccccccccCCCCCCCCCeEEEeeCCCC
Q 038969          316 PILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYG----VKKNWQG-DPCAPKVYLWQGLNCSYDGNELPRIISLNLSSS  390 (678)
Q Consensus       316 p~lna~e~~~~~~~~~~~~~~~d~~al~~~k~~~~----~~~~w~g-~pc~p~~~~w~gv~C~~~~~~~~~l~~l~Ls~n  390 (678)
                      |.+-.+-++.....  ....++|..||+++|+.+.    ...+|+. +.|    |.|.|+.|+..    .+|+.|+|++|
T Consensus        10 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~----~~v~~L~L~~~   79 (968)
T PLN00113         10 PYLIFMLFFLFLNF--SMLHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS----SRVVSIDLSGK   79 (968)
T ss_pred             ChHHHHHHHHHHHc--cCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC----CcEEEEEecCC
Confidence            44333334444433  3346689999999999884    2357853 223    46999999753    47888999988


Q ss_pred             CCccccchhhhcCcCCCeeccCCCcCCCCCChhhh-hhhhhhhhhccCCCCCCCCcc
Q 038969          391 GISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLS-ELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       391 ~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~-~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      +++|.+|..+..|++|+.|+|++|+++|.+|..+. .+++|+.|+|++|+++|.+|.
T Consensus        80 ~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         80 NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            88888888888888888888888888888888765 777788888887777776665

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.94  E-value=2.9e-09  Score=101.94  Aligned_cols=124  Identities=11%  Similarity=0.045  Sum_probs=87.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCc-ccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNL-TTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NI-v~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.++.|.++.||++..  .+..+++|....... ....+.+|+..  .+.+.++ .+++.+.  ....++||||+++.++
T Consensus         4 ~~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEV--ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEE--CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            4678999999999986  578899999865432 12344556555  3444443 4555443  3345899999999887


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC--CCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC--CPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~--~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      .+..        .....++.+++++|+ .||...  ...++|+|++|.|   +++.++++|||.|.
T Consensus        79 ~~~~--------~~~~~~~~~l~~~l~-~LH~~~~~~~~~~HgD~~~~Nil~~~~~~~liDf~~a~  135 (170)
T cd05151          79 LTED--------FSDPENLEKIAKLLK-KLHSSPLPDLVPCHNDLLPGNFLLDDGRLWLIDWEYAG  135 (170)
T ss_pred             cccc--------ccCHHHHHHHHHHHH-HHhCCCCCCceeecCCCCcCcEEEECCeEEEEeccccc
Confidence            6430        112345678999999 999832  1236999999999   66789999999876

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=1.5e-09  Score=123.94  Aligned_cols=134  Identities=15%  Similarity=0.153  Sum_probs=102.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEec----c-Cchhh-HHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLS----A-SSVQG-YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~----~-~~~~~-~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.++|.|++|.|+...........+.|...    . ..... ...+..|..+  .++|+|++..+..+.+.....-+|||
T Consensus       323 ~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~  402 (601)
T KOG0590|consen  323 GRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEY  402 (601)
T ss_pred             cceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhhc
Confidence            468999999988777665444445544432    1 11111 1113344433  48999998877777666666666999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |++ +|..++.....++..++..+..|+..|+. |+|.   .+|.|||+|++|    ..+.+||+|||.+.
T Consensus       403 ~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~-y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~~~  468 (601)
T KOG0590|consen  403 CPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVK-YLHS---MGLAHRDLKLENLLVTENGILKIIDFGAAS  468 (601)
T ss_pred             ccH-HHHHHHhcccccchhhhhHHHHHHHHHHH-HHHh---cCceeccCccccEEEecCCceEEeecCcce
Confidence            999 99999987667999999999999999999 9999   999999999999    78899999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.82  E-value=2.1e-09  Score=128.44  Aligned_cols=83  Identities=13%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CCcccEEEEE-------EcCCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCC
Q 038969          588 KNLTTLVGYC-------DEDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSS  659 (678)
Q Consensus       588 ~NIv~l~g~~-------~~~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk  659 (678)
                      .||.++++++       .+...+++++||+ .++|.++|... ..+++.+++.++.||++||+ |||+   .+|||||||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~gIvHrDlK  107 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVN-AAHS---QGIVVHNVR  107 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHH-HHHh---CCeeeccCC
Confidence            5777788877       2334577889988 55999999753 56999999999999999999 9999   899999999


Q ss_pred             CCC----CCCcEEEEeeCCc
Q 038969          660 SNP----HKNIVKLITFSII  675 (678)
Q Consensus       660 ~~N----~~~~vkI~DFGla  675 (678)
                      |+|    ..+.+|++|||++
T Consensus       108 P~NiLl~~~~~~k~~d~~~~  127 (793)
T PLN00181        108 PSCFVMSSFNHVSFIESASC  127 (793)
T ss_pred             chhEEEcccCcEEEeecccc
Confidence            999    4444444444443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.79  E-value=5.9e-09  Score=116.94  Aligned_cols=131  Identities=11%  Similarity=0.066  Sum_probs=83.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh------------------------------H----------HHHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------------------------------Y----------KQFQ  578 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~------------------------------~----------~~f~  578 (678)
                      +.||+|++|+||+|+++.+|+.||||+++......                              .          -+|.
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            58999999999999998449999999997542100                              0          1133


Q ss_pred             HHHHHh------cCCCCcccEEEEEEc-CCeeEEEEecCCCCCHHHhh--cCCCCCCHHHHHHHHHHHHHHHHHhHhcCC
Q 038969          579 AEVQYI------VHHKNLTTLVGYCDE-DTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQGSHSAFDQGC  649 (678)
Q Consensus       579 ~Ev~~~------l~H~NIv~l~g~~~~-~~~~~LV~Ey~~~GsL~~~L--~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~  649 (678)
                      +|+...      ..+.+.+.+-.++.+ ....+|||||++|+.+.+.-  .. ...+   +..++...++..-.-++.  
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~-~g~d---~~~la~~~v~~~~~Qif~--  278 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRA-AGTD---MKLLAERGVEVFFTQVFR--  278 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHh-cCCC---HHHHHHHHHHHHHHHHHh--
Confidence            343221      334444444444433 45678999999999998742  22 1222   223333333221112333  


Q ss_pred             CCCccccCCCCCC----CCC----cEEEEeeCCcc
Q 038969          650 CPHICESSSSSNP----HKN----IVKLITFSIIK  676 (678)
Q Consensus       650 ~~~iiHrDlk~~N----~~~----~vkI~DFGlar  676 (678)
                       .+++|+|+||.|    .++    .++++|||++.
T Consensus       279 -~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg  312 (537)
T PRK04750        279 -DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVG  312 (537)
T ss_pred             -CCeeeCCCChHHeEEecCCCCCCeEEEEecceEE
Confidence             789999999999    455    89999999875

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.79  E-value=4.1e-08  Score=96.14  Aligned_cols=129  Identities=16%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             hhcccCCceEEEEEEEcc------CCEEEEEEEeccCc-----hh-----------------hHHHHH----HHHHHh--
Q 038969          539 KVIGKGGFGTVYHGYLEF------NGTQVAVKMLSASS-----VQ-----------------GYKQFQ----AEVQYI--  584 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~------~g~~VAVK~l~~~~-----~~-----------------~~~~f~----~Ev~~~--  584 (678)
                      -+||.|.=+.||.|....      .+..+|||+.+...     ..                 ..+.+.    +|...+  
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999997642      24789999875421     00                 011222    555542  


Q ss_pred             cC--CCCcccEEEEEEcCCeeEEEEecCCCCCHHH-hhcCCCCCCHHHHHHHHHHHHHHHHHhH-hcCCCCCccccCCCC
Q 038969          585 VH--HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEE-HLSGANTLTWEARLRIATEAAQGSHSAF-DQGCCPHICESSSSS  660 (678)
Q Consensus       585 l~--H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~-~L~~~~~l~~~~~l~ia~~ia~gL~~yL-H~~~~~~iiHrDlk~  660 (678)
                      +.  .-++.+.+++    ...+|||||+.++.+.. .|+. ..++..+...+..+++.+|. .| |+   .++||+||++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd-~~~~~~~~~~i~~~i~~~l~-~l~H~---~glVHGDLs~  153 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD-AKLNDEEMKNAYYQVLSMMK-QLYKE---CNLVHADLSE  153 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc-cccCHHHHHHHHHHHHHHHH-HHHHh---CCeecCCCCH
Confidence            22  3456666654    45789999997654422 2322 34555667788899999999 88 77   7899999999


Q ss_pred             CC---CCCcEEEEeeCCcc
Q 038969          661 NP---HKNIVKLITFSIIK  676 (678)
Q Consensus       661 ~N---~~~~vkI~DFGlar  676 (678)
                      .|   .++.+.|+|||.|-
T Consensus       154 ~NIL~~~~~v~iIDF~qav  172 (197)
T cd05146         154 YNMLWHDGKVWFIDVSQSV  172 (197)
T ss_pred             HHEEEECCcEEEEECCCce
Confidence            99   67889999999764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.76  E-value=1.8e-09  Score=106.65  Aligned_cols=109  Identities=21%  Similarity=0.402  Sum_probs=91.9

Q ss_pred             hhhhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      ++..+|.+...|..|+|++  .|..+++|++.-.  .....++|..|.-.  .+.||||+.++|.|....+..+|..||+
T Consensus       193 nl~tkl~e~hsgelwrgrw--qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp  270 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRW--QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMP  270 (448)
T ss_pred             hhhhhhccCCCcccccccc--cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeecc
Confidence            3445688888999999998  4667777887643  33344678888765  3889999999999999999999999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                      .|+|...|++.  ..++-.+++++|.++|+||+ |||+
T Consensus       271 ~gslynvlhe~t~vvvd~sqav~faldiargma-flhs  307 (448)
T KOG0195|consen  271 FGSLYNVLHEQTSVVVDHSQAVRFALDIARGMA-FLHS  307 (448)
T ss_pred             chHHHHHHhcCccEEEecchHHHHHHHHHhhHH-HHhh
Confidence            99999999986  45788999999999999999 9998

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.69  E-value=1.5e-07  Score=89.53  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=91.3

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCch---h-----hHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---Q-----GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~-----~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+++|+=+.+|.+.+  -|.++.+|.-.....   .     ....-.+|+.++  ++--.|..-.=+..+.....|+|||
T Consensus         3 ~i~~GAEa~i~~~~~--~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           3 LIKQGAEAIIYLTDF--LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             hhhCCcceeEEeeec--cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            578999999999966  355677776543311   1     123345566552  3333444444456677888999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      .++-.|.+++...       +..++..|-.-+. -||.   .+|||+||.++|   ....+.++||||++
T Consensus        81 I~G~~lkd~l~~~-------~~~~~r~vG~~vg-~lH~---~givHGDLTtsNiIl~~~~i~~IDfGLg~  139 (204)
T COG3642          81 IEGELLKDALEEA-------RPDLLREVGRLVG-KLHK---AGIVHGDLTTSNIILSGGRIYFIDFGLGE  139 (204)
T ss_pred             eCChhHHHHHHhc-------chHHHHHHHHHHH-HHHh---cCeecCCCccceEEEeCCcEEEEECCccc
Confidence            9999999998753       4677778888888 9999   899999999999   66679999999986

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.69  E-value=9.9e-08  Score=95.30  Aligned_cols=135  Identities=12%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCC--CCcccEEEEEEcCC---eeEEEEecC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHH--KNLTTLVGYCDEDT---NMGLIYEFM  610 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H--~NIv~l~g~~~~~~---~~~LV~Ey~  610 (678)
                      +.|+.|..+.||++... +|+.+++|....... ....++..|+..  .+++  ..+.+++.+.....   ..++||||+
T Consensus         4 ~~l~~G~~n~~~~v~~~-~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG-GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEec-CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            46899999999999875 568999999765432 123456666666  3544  45677888876542   568999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----------------------------------------
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----------------------------------------  649 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----------------------------------------  649 (678)
                      +++++.+.+.. ..++..++..++.+++++|. .||+..                                         
T Consensus        83 ~G~~l~~~~~~-~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
T cd05154          83 DGRVLRDRLLR-PELSPEERRALARALADTLA-ALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERL  160 (223)
T ss_pred             CCEecCCCCCC-CCCCHHHHHHHHHHHHHHHH-HHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            99888876542 35788889999999999999 998621                                         


Q ss_pred             ------------CCCccccCCCCCC----C--CCcEEEEeeCCcc
Q 038969          650 ------------CPHICESSSSSNP----H--KNIVKLITFSIIK  676 (678)
Q Consensus       650 ------------~~~iiHrDlk~~N----~--~~~vkI~DFGlar  676 (678)
                                  ...++|+|+.+.|    +  ...+.|+||+.+.
T Consensus       161 ~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         161 LRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                        2456999999999    3  4568999999875

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.52  E-value=1.3e-07  Score=103.92  Aligned_cols=88  Identities=22%  Similarity=0.369  Sum_probs=81.4

Q ss_pred             cCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCc-cccCCCCCC
Q 038969          585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHI-CESSSSSNP  662 (678)
Q Consensus       585 l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~i-iHrDlk~~N  662 (678)
                      +.|.|+.+++|.+..+...++|.+||+.|+|.+.+... ..++|.-...+.+++++||+ |||.   .+| .|+.++++|
T Consensus         4 l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~-ylh~---s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    4 LDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLA-YLHN---SPIGYHGALKSSN   79 (484)
T ss_pred             cchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHH-HHhc---Ccceeeeeecccc
Confidence            67999999999999999999999999999999999874 78999999999999999999 9999   444 999999999


Q ss_pred             ----CCCcEEEEeeCCcc
Q 038969          663 ----HKNIVKLITFSIIK  676 (678)
Q Consensus       663 ----~~~~vkI~DFGlar  676 (678)
                          ..+.+||+|||+..
T Consensus        80 Clvd~~w~lklt~~Gl~~   97 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNS   97 (484)
T ss_pred             ceeeeeEEEEechhhhcc
Confidence                88899999999853

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.49  E-value=9.6e-07  Score=83.74  Aligned_cols=132  Identities=12%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--------hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--------VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--------~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      ..+-||+-+.|+++.+  .|+...||.-....        .-..+...+|++.+  ++--.|.--.-++.+...-.|+||
T Consensus        13 ~likQGAEArv~~~~~--~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   13 ELIKQGAEARVPRGSF--SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             eeeeccceeeEeeecc--CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            5788999999999987  68887777653321        11234566777663  222233333334555566779999


Q ss_pred             cCCC-CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          609 FMAK-GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~-GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      |+++ -++.+++...  ....-......+..|-+.+. -||.   ..|||+||.++|       ....+.++||||+.
T Consensus        91 ~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~ig-klH~---ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   91 FIDGASTVKDFILSTMEDESEDEGLAELARRIGELIG-KLHD---NDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             eccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHH-Hhhh---CCeecccccccceEEecCCCcCceEEEeecchh
Confidence            9976 4788888654  22222333788899999999 9999   899999999999       34456899999974

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.48  E-value=2.7e-08  Score=109.39  Aligned_cols=134  Identities=21%  Similarity=0.224  Sum_probs=108.2

Q ss_pred             hcccCCceEEEEEEE---ccCCEEEEEEEeccCchh----hHHHHHHHHHHhcC-CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          540 VIGKGGFGTVYHGYL---EFNGTQVAVKMLSASSVQ----GYKQFQAEVQYIVH-HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~---~~~g~~VAVK~l~~~~~~----~~~~f~~Ev~~~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      ++|+|.||.|+.+.-   ...|+.+|+|.++.....    ....+++.+...++ |+.+|++.-.+..+...+++.+|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            368999999986542   224567888888664211    12223333333344 9999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|...+.................+|-+++ ++|+   .+|+|||+|++|    .+|++|+.|||++|+
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald-~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske  146 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALD-HLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKE  146 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHh-hcch---hHHHHhcccccceeecccCccccCCchhhhH
Confidence            9999999988777888888888889999999 9999   899999999999    899999999999885

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.48  E-value=1.8e-07  Score=97.49  Aligned_cols=70  Identities=10%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             CeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CC--CcEEEEee
Q 038969          601 TNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HK--NIVKLITF  672 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~--~~vkI~DF  672 (678)
                      ..+|+||.-.+. +|++||..+ ..+...+.-|..|+++|.. |||+   ++|.|||+|+.|      ++  -.+.|+||
T Consensus       316 ~tlylvMkrY~~-tLr~yl~~~-~~s~r~~~~~laQlLEav~-hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDF  389 (598)
T KOG4158|consen  316 KTLYLVMKRYRQ-TLREYLWTR-HRSYRTGRVILAQLLEAVT-HLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADF  389 (598)
T ss_pred             ceEEEehhcchh-hHHHHHhcC-CCchHHHHHHHHHHHHHHH-HHHH---ccchhhcccccceEEEecCCCCcEEEEccc
Confidence            458899998866 999999874 4566667778899999999 9999   999999999999      22  35799999


Q ss_pred             CCcc
Q 038969          673 SIIK  676 (678)
Q Consensus       673 Glar  676 (678)
                      |.|-
T Consensus       390 GCcL  393 (598)
T KOG4158|consen  390 GCCL  393 (598)
T ss_pred             ceee
Confidence            9653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.41  E-value=6.2e-07  Score=92.71  Aligned_cols=134  Identities=22%  Similarity=0.294  Sum_probs=89.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHHh--cC----------CCCcccEEEEEE----
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQYI--VH----------HKNLTTLVGYCD----  598 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~~--l~----------H~NIv~l~g~~~----  598 (678)
                      .+.||.|+++.||.+.+...|+++|||.....   .....+++++|....  +.          |-.++--++...    
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~   96 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGK   96 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCC
Confidence            36899999999999999878999999998543   223466777776441  11          222222222211    


Q ss_pred             -----cC---C-----eeEEEEecCCCCCHHHhhcC---C----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC
Q 038969          599 -----ED---T-----NMGLIYEFMAKGNLEEHLSG---A----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS  658 (678)
Q Consensus       599 -----~~---~-----~~~LV~Ey~~~GsL~~~L~~---~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl  658 (678)
                           .+   .     +.+++|+-+ .+||.+++..   .    ..+.-..++.+..|+.+.++ +||.   .+++|+||
T Consensus        97 ~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA-~Lh~---~GlVHgdi  171 (288)
T PF14531_consen   97 PPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVA-NLHS---YGLVHGDI  171 (288)
T ss_dssp             -SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHH-HHHH---TTEEEST-
T ss_pred             CcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH-HHhh---cceEeccc
Confidence                 11   1     235678877 4599888642   1    23445667788899999999 9999   99999999


Q ss_pred             CCCC----CCCcEEEEeeCCcc
Q 038969          659 SSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       659 k~~N----~~~~vkI~DFGlar  676 (678)
                      ||+|    +++.++|+||+...
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~  193 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLV  193 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEE
T ss_pred             ceeeEEEcCCCCEEEcChHHHe
Confidence            9999    89999999998654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=1.2e-07  Score=74.77  Aligned_cols=61  Identities=41%  Similarity=0.538  Sum_probs=55.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL  440 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  440 (678)
                      |+++.|+|++|+++..-+..|..+++|++|+|++|+++..-|..|..|++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4788999999999955556799999999999999999988888999999999999999985

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.30  E-value=9.4e-08  Score=110.46  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=104.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHH---HHH-hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAE---VQY-IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~E---v~~-~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.+.||++.|=+|.+|+.+ .|. |+||++-... .-..+.|.++   ++. +.+|||.+.+.-+-......|||-+|..
T Consensus        27 ~~~~LGstRFlKv~r~k~~-eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyvk  104 (1431)
T KOG1240|consen   27 YVENLGSTRFLKVARAKDR-EGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYVK  104 (1431)
T ss_pred             eecccCchhhhhhhhccCC-Cce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHHh
Confidence            4578999999999999886 565 9999985543 2334444443   333 5899999998877666777889999997


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeC
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFS  673 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFG  673 (678)
                      + +|.|.|..+.-|...+..=||.|+..||. -.|.   .+|+|||||.+|    .=.=+.|+||-
T Consensus       105 h-nLyDRlSTRPFL~~iEKkWiaFQLL~al~-qcH~---~gVcHGDIKsENILiTSWNW~~LtDFA  165 (1431)
T KOG1240|consen  105 H-NLYDRLSTRPFLVLIEKKWIAFQLLKALS-QCHK---LGVCHGDIKSENILITSWNWLYLTDFA  165 (1431)
T ss_pred             h-hhhhhhccchHHHHHHHHHHHHHHHHHHH-HHHH---cCccccccccceEEEeeechhhhhccc
Confidence            6 99999998877888888999999999999 9999   899999999999    33336777775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.22  E-value=2e-07  Score=86.71  Aligned_cols=81  Identities=31%  Similarity=0.448  Sum_probs=74.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ...++.|.||+|.++ .+|+.|+.|.+|+.|++++|++. .+|.++++|+.|+.|++.-|.|. .+|..++..+.+..++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            468899999999998 78999999999999999999999 89999999999999999999998 7999999998888888


Q ss_pred             cccc
Q 038969          459 LSVD  462 (678)
Q Consensus       459 l~~~  462 (678)
                      +.|.
T Consensus       109 ltyn  112 (264)
T KOG0617|consen  109 LTYN  112 (264)
T ss_pred             cccc
Confidence            8775

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.21  E-value=3.7e-05  Score=79.44  Aligned_cols=131  Identities=15%  Similarity=0.064  Sum_probs=91.2

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHH----------HHHHHHHHh--cC--CCCcccEEEEEEc-----
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYK----------QFQAEVQYI--VH--HKNLTTLVGYCDE-----  599 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~----------~f~~Ev~~~--l~--H~NIv~l~g~~~~-----  599 (678)
                      .+-......|++...  +|+.+.||........ ..+          .+.+|...+  +.  .-..+..+++...     
T Consensus        29 ~v~~~~~rrvvr~~~--~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         29 VFRELEGRRTLRFEL--AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             EEecCCCceEEEEEE--CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            344333445777655  7889999977543311 111          356676552  32  2334455666543     


Q ss_pred             CCeeEEEEecCCCC-CHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---C--------CC
Q 038969          600 DTNMGLIYEFMAKG-NLEEHLSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---H--------KN  665 (678)
Q Consensus       600 ~~~~~LV~Ey~~~G-sL~~~L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~--------~~  665 (678)
                      ....+||||++++- +|.+++..  ....+...+..++.++++.+. -||.   .+|+|+|++++|   +        ..
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~-~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~  182 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVR-DMHA---AGINHRDCYICHFLLHLPFPGREEDL  182 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHH-HHHH---CcCccCCCChhhEEEeccccCCCCCc
Confidence            23578999999876 79998853  244566778899999999999 9999   899999999999   3        36


Q ss_pred             cEEEEeeCCcc
Q 038969          666 IVKLITFSIIK  676 (678)
Q Consensus       666 ~vkI~DFGlar  676 (678)
                      .+.++||+.++
T Consensus       183 ~~~LIDl~r~~  193 (268)
T PRK15123        183 KLSVIDLHRAQ  193 (268)
T ss_pred             eEEEEECCccc
Confidence            79999999874

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.09  E-value=1.3e-05  Score=78.26  Aligned_cols=120  Identities=17%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             EEEEEEEccCCEEEEEEEeccCc--------------h-------h-----hHHHHHHHHHHh--cCCC--CcccEEEEE
Q 038969          548 TVYHGYLEFNGTQVAVKMLSASS--------------V-------Q-----GYKQFQAEVQYI--VHHK--NLTTLVGYC  597 (678)
Q Consensus       548 ~Vy~g~~~~~g~~VAVK~l~~~~--------------~-------~-----~~~~f~~Ev~~~--l~H~--NIv~l~g~~  597 (678)
                      .||.|... +|..+|||+.....              .       .     .....++|.+.+  +...  ++.+.+.+.
T Consensus         1 ~Vy~~~~~-~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~   79 (188)
T PF01163_consen    1 DVYHAIDP-DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN   79 (188)
T ss_dssp             EEEEEEEC-TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE
T ss_pred             CEEEEECC-CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe
Confidence            48999876 89999999875420              0       0     012345566553  4433  566666542


Q ss_pred             EcCCeeEEEEecCC--CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEee
Q 038969          598 DEDTNMGLIYEFMA--KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITF  672 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~--~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DF  672 (678)
                          ...|||||++  +..+......  .++......++.++++.+...+|.   .+|||+||.+.|   .++.+.|+||
T Consensus        80 ----~~~ivME~I~~~G~~~~~l~~~--~~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~~~~~iIDf  150 (188)
T PF01163_consen   80 ----RNVIVMEYIGEDGVPLPRLKDV--DLSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDDGKVYIIDF  150 (188)
T ss_dssp             ----TTEEEEE--EETTEEGGCHHHC--GGGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEETTCEEE--G
T ss_pred             ----CCEEEEEecCCCccchhhHHhc--cccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeecceEEEEec
Confidence                3579999998  4444433221  122445567777888866624567   799999999999   5559999999


Q ss_pred             CCccc
Q 038969          673 SIIKN  677 (678)
Q Consensus       673 Glar~  677 (678)
                      |.|-+
T Consensus       151 ~qav~  155 (188)
T PF01163_consen  151 GQAVD  155 (188)
T ss_dssp             TTEEE
T ss_pred             Cccee
Confidence            98753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.03  E-value=1.9e-06  Score=88.11  Aligned_cols=84  Identities=21%  Similarity=0.379  Sum_probs=71.3

Q ss_pred             cCCCCcccEEEEEEcC-----CeeEEEEecCCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccc
Q 038969          585 VHHKNLTTLVGYCDED-----TNMGLIYEFMAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICE  655 (678)
Q Consensus       585 l~H~NIv~l~g~~~~~-----~~~~LV~Ey~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiH  655 (678)
                      +.|.|||+++.|+.+.     .....++|||+.|+|..+|++-    +.+....-.+++-||..||. |||. |.|+|+|
T Consensus       124 lvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~-yLhs-~~Ppiih  201 (458)
T KOG1266|consen  124 LVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALS-YLHS-CDPPIIH  201 (458)
T ss_pred             HHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh-hhhc-cCCcccc
Confidence            5699999999998553     4578999999999999999753    66888888899999999999 9998 8999999


Q ss_pred             cCCCCCC----CCCcEEEE
Q 038969          656 SSSSSNP----HKNIVKLI  670 (678)
Q Consensus       656 rDlk~~N----~~~~vkI~  670 (678)
                      +++..+-    .++-+||.
T Consensus       202 gnlTc~tifiq~ngLIkig  220 (458)
T KOG1266|consen  202 GNLTCDTIFIQHNGLIKIG  220 (458)
T ss_pred             CCcchhheeecCCceEEec
Confidence            9999876    55556654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.98  E-value=1.8e-05  Score=88.39  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             EEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHH
Q 038969          551 HGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWE  628 (678)
Q Consensus       551 ~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~  628 (678)
                      .|..+.++.+|.|...+...........+.+..  .++||||++++......+..|||+|-+.  -|..++++   +...
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~---l~~~  104 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE---LGKE  104 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH---hHHH
Confidence            355555888999998877654112223333333  3999999999999999999999999884  47777765   4566


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          629 ARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       629 ~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ...-.+.||+.||. |||+.|  .++|++|....    +.+.-||++|.++.
T Consensus       105 ~v~~Gl~qIl~AL~-FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~  153 (690)
T KOG1243|consen  105 EVCLGLFQILAALS-FLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVS  153 (690)
T ss_pred             HHHHHHHHHHHHHH-HHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEe
Confidence            77778899999999 999764  49999999986    89999999998764

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=1.2e-06  Score=100.26  Aligned_cols=136  Identities=13%  Similarity=0.189  Sum_probs=105.8

Q ss_pred             hhhcccCCceEEEEEEEccC-CEEEEEEEeccCc--hhhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-GTQVAVKMLSASS--VQGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|.|+.|-......+ ...+|+|.+....  .........|..+  .+. |+|++++++.....+..+++.||..
T Consensus        25 ~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~  104 (601)
T KOG0590|consen   25 SRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSD  104 (601)
T ss_pred             cccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCccc
Confidence            35689999999988876422 2357777776543  1112222334444  344 9999999999999999999999999


Q ss_pred             CCCHHHhh-cCCC-CCCHHHHHHHHHHHHHHHHHhHh-cCCCCCccccCCCCCC----CCC-cEEEEeeCCccc
Q 038969          612 KGNLEEHL-SGAN-TLTWEARLRIATEAAQGSHSAFD-QGCCPHICESSSSSNP----HKN-IVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L-~~~~-~l~~~~~l~ia~~ia~gL~~yLH-~~~~~~iiHrDlk~~N----~~~-~vkI~DFGlar~  677 (678)
                      +|++.+.+ .... ..+....-....|+..|+. |+| .   .++.|||+||+|    ..+ .+|++|||+|..
T Consensus       105 g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~-~~H~~---~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~  174 (601)
T KOG0590|consen  105 GGSLFSKISHPDSTGTSSSSASRYLPQLNSGLS-YLHPE---NGVTHRDIKPSNSLLDESGSALKIADFGLATA  174 (601)
T ss_pred             ccccccccccCCccCCCCcchhhhhhhhccCcc-ccCcc---cccccCCCCCccchhccCCCcccCCCchhhcc
Confidence            99999998 5443 6777788889999999999 999 6   789999999999    556 899999999864

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=97.87  E-value=6.4e-05  Score=72.64  Aligned_cols=139  Identities=19%  Similarity=0.309  Sum_probs=74.4

Q ss_pred             eEeecCCCCCCCCccCCCCeeeecCCCcccCCcee-----------eeCCCccCccccccccceeeecCCCCCceeeecC
Q 038969            2 ISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVIN-----------NISSEYSSNKTLERQFLNVRSFPEGIRNCYTLKP   70 (678)
Q Consensus         2 isidCG~~~~~~y~d~~t~i~~~~D~~fi~~G~~~-----------~i~~~~~~~~~~~~~~~tlR~Fp~g~rnCY~l~~   70 (678)
                      +.|+||.+   .|+| ..|+.|.+|..|.-.+..-           ......... .....|+|-|+=|.  .--|.+|+
T Consensus         3 ~~IN~Gg~---~~~~-~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t-~d~~Lyqt~R~g~~--~f~Y~ip~   75 (174)
T PF11721_consen    3 LRINAGGP---AYTD-SSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGT-TDDPLYQTERYGPS--SFSYDIPV   75 (174)
T ss_dssp             EEEEETSS---SEEE-TTTEEE-SSSSSTTSS-----------SSTTS--TTS-H-HHHHTTT-----SS--SEEEEEE-
T ss_pred             EEEECCCC---cccC-CCCCEEcCCCCCCCCCcccccccccccccccccccccCC-CchhhhHhhcCCCC--ceEEEEec
Confidence            57999975   4555 5799999999997433300           001111111 23457889999443  46899995


Q ss_pred             CCCCcceEEEEEeecccCC--CCCCCc---eEEEEecCcE-EEEEEecC-C--Cc-cEEEEEE-EeccCCceeEEEEe--
Q 038969           71 SSGDVKFLIRARFMYGNYD--GQNIIP---SFSLLLEADV-WDSVNLKD-A--SG-IVTKEII-HAPKKNYMYVCLVN--  137 (678)
Q Consensus        71 ~~g~~~YliR~~F~ygnyd--~~~~~p---~Fdl~~g~~~-w~~v~~~~-~--~~-~~~~e~i-~~~~~~~~~vClv~--  137 (678)
                      .+.+ .|-||..|-=--++  +....|   .||+++++.. ...+++-. +  .. +...+.+ +...+..+.++|..  
T Consensus        76 ~~~G-~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~  154 (174)
T PF11721_consen   76 VPNG-TYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAG  154 (174)
T ss_dssp             -S-E-EEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE-
T ss_pred             CCCc-EEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecC
Confidence            4444 89999999322222  222222   6999999954 55555422 1  12 4555553 23477889999996  


Q ss_pred             ---------cCCCCceeeee
Q 038969          138 ---------TGSGTPFISAL  148 (678)
Q Consensus       138 ---------~~~g~PfIS~l  148 (678)
                               ...|.|.||+|
T Consensus       155 ~~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  155 KGTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             -SEEEEEEESSSSSSSEEEE
T ss_pred             CCcEEeeccccCCCcEEeeC
Confidence                     44566888876

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.74  E-value=1.6e-05  Score=83.40  Aligned_cols=84  Identities=33%  Similarity=0.441  Sum_probs=66.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCC----------------------CCCChh-hhhhhhhhhhhc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT----------------------GSVPEF-LSELHFLRVLNL  435 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~----------------------G~iP~~-l~~l~~L~~L~l  435 (678)
                      +++++.|+|++|-|. .+|.+++.+..||.||||+|+|.                      |.+|.+ +.+|.+|..|||
T Consensus       434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            578899999988887 89999999999999999999883                      445444 777788888888


Q ss_pred             cCCCCCCCCcccchhhhccccccccccCCCC
Q 038969          436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNPK  466 (678)
Q Consensus       436 s~N~l~G~iP~~l~~~~~~~~l~l~~~~n~~  466 (678)
                      .+|.+. .||..++++.++..+  ...|||.
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hL--eL~gNpf  540 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHL--ELDGNPF  540 (565)
T ss_pred             CCCchh-hCChhhccccceeEE--EecCCcc
Confidence            888887 788888877765544  4567775

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.72  E-value=0.00035  Score=69.46  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=73.9

Q ss_pred             HHHHHHHH--h--cCCCCcccEEEEEEcCC----eeEEEEecCCCC-CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHh
Q 038969          576 QFQAEVQY--I--VHHKNLTTLVGYCDEDT----NMGLIYEFMAKG-NLEEHLSGANTLTWEARLRIATEAAQGSHSAFD  646 (678)
Q Consensus       576 ~f~~Ev~~--~--l~H~NIv~l~g~~~~~~----~~~LV~Ey~~~G-sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH  646 (678)
                      ...+|...  .  -..-...+.+++...+.    ..+||+|++++- +|.+++.....++......++.++++.+. -||
T Consensus        57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~-~lH  135 (206)
T PF06293_consen   57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIA-KLH  135 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHH-HHH
Confidence            34555544  1  22344666777765532    358999999874 79999986545777888999999999999 999


Q ss_pred             cCCCCCccccCCCCCC----CC---CcEEEEeeCCcc
Q 038969          647 QGCCPHICESSSSSNP----HK---NIVKLITFSIIK  676 (678)
Q Consensus       647 ~~~~~~iiHrDlk~~N----~~---~~vkI~DFGlar  676 (678)
                      .   .+|+|+|+++.|    .+   ..+.++||+-++
T Consensus       136 ~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~  169 (206)
T PF06293_consen  136 D---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR  169 (206)
T ss_pred             H---CcCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence            9   999999999999    33   369999998765

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=1.7e-05  Score=87.54  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=103.7

Q ss_pred             hhcccCCceEEEEEEEc-cCCEEEEEEEeccCchhhHHH--HHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLE-FNGTQVAVKMLSASSVQGYKQ--FQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~-~~g~~VAVK~l~~~~~~~~~~--f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      ..||.|.|+.|++...+ .++..+++|.+.........+  -..|+.+   +..|.+++.....+..-.+.++--||+++
T Consensus       271 ~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~  350 (524)
T KOG0601|consen  271 SKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEG  350 (524)
T ss_pred             EEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcC
Confidence            57999999999988755 467899999987653222111  1234333   35577788776666666777899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CC--CcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HK--NIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~--~~vkI~DFGlar  676 (678)
                      +++...+.-...++...++++..|++.+|. ++|+   +.++|+|+||+|   .+  +..++.|||.+.
T Consensus       351 ~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~-~i~s---~~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  351 GSSSLRSVTSQMLDEDPRLRLTAQILTALN-VIHS---KLFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             cchhhhhHHHHhcCcchhhhhHHHHHhccc-cccc---hhhhcccccccceeeccchhhhhcccccccc
Confidence            998877754467888999999999999999 9998   999999999999   33  788999998763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.68  E-value=3.4e-05  Score=84.68  Aligned_cols=58  Identities=41%  Similarity=0.531  Sum_probs=28.9

Q ss_pred             EEEeeCCCCCCccccchh-hhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          382 IISLNLSSSGISGEIITY-IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       382 l~~l~Ls~n~l~G~ip~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      +..||||+|++. +||.. +.+|+-|-.||||+|+|. .+|+.+..|..|++|+|++|.|.
T Consensus       128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            344444444444 34433 445555555555555554 45555555555555555555443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.63  E-value=3.1e-05  Score=90.16  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHhcCCCCcccEEEEEEcCCeeEEEEecCCCCCHHHh
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEH  618 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~  618 (678)
                      +.|..|++|.||..+++...+..|+|+-++..      ..         +||..+.      +..+.|      |+-...
T Consensus        89 klisngAygavylvrh~~trqrfa~kiNkq~l------il---------Rnilt~a------~npfvv------gDc~tl  141 (1205)
T KOG0606|consen   89 KLISNGAYGAVYLVRHKETRQRFAMKINKQNL------IL---------RNILTFA------GNPFVV------GDCATL  141 (1205)
T ss_pred             EeeccCCCCceeeeeccccccchhhcccccch------hh---------hcccccc------CCccee------chhhhh
Confidence            67899999999999887566788885433221      11         1222211      112222      566666


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          619 LSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       619 L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++.-..++-..        +.+++ |||+   .+|+|||+||.|    .-+++|+.||||.+.
T Consensus       142 lk~~g~lPvdm--------vla~E-ylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk~  192 (1205)
T KOG0606|consen  142 LKNIGPLPVDM--------VLAVE-YLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKK  192 (1205)
T ss_pred             cccCCCCcchh--------hHHhH-hhcc---CCeecCCCCCCcceeeecccccccchhhhhh
Confidence            66544444333        67899 9999   999999999999    889999999999873

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=4.2e-05  Score=84.49  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=106.4

Q ss_pred             hhhhhhccc--CCceEEEEEEE--ccCCEEEEEEEecc--CchhhHHHHHHHHHH--h-cCCCCcccEEEEEEcCCeeEE
Q 038969          535 NNFEKVIGK--GGFGTVYHGYL--EFNGTQVAVKMLSA--SSVQGYKQFQAEVQY--I-VHHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       535 ~~f~~~IG~--G~fG~Vy~g~~--~~~g~~VAVK~l~~--~~~~~~~~f~~Ev~~--~-l~H~NIv~l~g~~~~~~~~~L  605 (678)
                      .+..+.+|+  |.+|.||.+..  ..++..+|+|.-+.  ...+..+.=.+|+..  . -.|+|.++....+.+++..++
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            344577899  99999999988  66888999998433  222222222344444  2 349999998888899999999


Q ss_pred             EEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHH----HHHHhHhcCCCCCccccCCCCCC----CC-CcEEEEeeCCc
Q 038969          606 IYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQ----GSHSAFDQGCCPHICESSSSSNP----HK-NIVKLITFSII  675 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~----gL~~yLH~~~~~~iiHrDlk~~N----~~-~~vkI~DFGla  675 (678)
                      -+|++. .+|.++-+.. ..++......+..+..+    ||. .+|.   ..|+|-|+||.|    .+ ...+++|||+.
T Consensus       196 qtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~-~~hs---~~~~~~~~kp~~i~~~~~~~s~~~~df~~v  270 (524)
T KOG0601|consen  196 QTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALS-HLHS---NNIVHDDLKPANIFTTSDWTSCKLTDFGLV  270 (524)
T ss_pred             eecccc-chhHHhhhcccccCCchhhhhHHhhhhhccccccc-ccCC---CcccccccchhheecccccceeecCCccee
Confidence            999985 6899988765 33667777777777777    999 9999   899999999999    55 78999999986


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      ++
T Consensus       271 ~~  272 (524)
T KOG0601|consen  271 SK  272 (524)
T ss_pred             EE
Confidence            53

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.58  E-value=2.7e-05  Score=56.90  Aligned_cols=36  Identities=47%  Similarity=0.658  Sum_probs=22.5

Q ss_pred             CCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          405 SLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       405 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      +|++|+|++|+++ .+|..+++|++|+.|+|++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 56666666666666666666666

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.56  E-value=3.4e-05  Score=72.11  Aligned_cols=74  Identities=27%  Similarity=0.361  Sum_probs=37.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC-CCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKN  454 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~  454 (678)
                      ++.+..|+++-|+|. .+|..|+.++.|+.|||++|+|+- .+|..|-.|+.|+.|.|+.|.|. -+|..+.++.++
T Consensus        78 l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l  152 (264)
T KOG0617|consen   78 LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL  152 (264)
T ss_pred             chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence            344555555555554 445555555555555555555543 24555555555555555555555 445444444433

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=97.46  E-value=9.3e-05  Score=71.49  Aligned_cols=99  Identities=21%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             EecCCCCCCCcCCCCCCCcccccCCCC---CCceeeeec-----cccccCCCCCCCcHHHHhhccccCCCCccceEEEee
Q 038969          168 WDVGSTTSEAIRYPDDVYDRIWSPYRS---LRWESITRR-----SDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWK  239 (678)
Q Consensus       168 ~~~g~~~~~~~rypdD~~DR~W~~~~~---~~~~~ist~-----~~i~~~~~~~~~P~~v~~tA~~~~~~~~~~l~~~~~  239 (678)
                      +|+|+.     .| +|...+.|.++..   ..|.-....     .......-....+..+.||+-....    .+.+...
T Consensus         5 IN~Gg~-----~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip   74 (174)
T PF11721_consen    5 INAGGP-----AY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIP   74 (174)
T ss_dssp             EEETSS-----SE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE
T ss_pred             EECCCC-----cc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEe
Confidence            788874     34 8899999988743   233111110     0011111223456699999976432    2555443


Q ss_pred             CCCCCCceEEEEEeeeccCCC-----CCceeEEEEEECCeeec
Q 038969          240 TSTPESQYYIFLHFAEVEGRQ-----ENQTREMSIYSNGKLWY  277 (678)
Q Consensus       240 ~~~~~~~~~~~lhFaei~~~~-----~~~~R~F~I~lng~~~~  277 (678)
                       ..++..|-|-|||||+..-.     ..+.|+|||++||+.+.
T Consensus        75 -~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl  116 (174)
T PF11721_consen   75 -VVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVL  116 (174)
T ss_dssp             ---S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEE
T ss_pred             -cCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEE
Confidence             24567899999999998533     25789999999998764

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.44  E-value=0.00087  Score=75.25  Aligned_cols=134  Identities=15%  Similarity=0.165  Sum_probs=84.5

Q ss_pred             hhh-hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh------------------------------HHHH-------
Q 038969          536 NFE-KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------------------------------YKQF-------  577 (678)
Q Consensus       536 ~f~-~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~------------------------------~~~f-------  577 (678)
                      .|+ +.|+.++-|+||+|+++ +|+.||||+.+..-...                              .++|       
T Consensus       127 eF~~~PiAsASIaQVH~A~L~-sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~E  205 (517)
T COG0661         127 EFEPEPIASASIAQVHRAVLK-SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREE  205 (517)
T ss_pred             HcCCCchhhhhHhhheeEEec-CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHH
Confidence            454 68999999999999998 79999999986541110                              0111       


Q ss_pred             ---HHHHHHh------cCCCCcccEEEEEEc-CCeeEEEEecCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHh
Q 038969          578 ---QAEVQYI------VHHKNLTTLVGYCDE-DTNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFD  646 (678)
Q Consensus       578 ---~~Ev~~~------l~H~NIv~l~g~~~~-~~~~~LV~Ey~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH  646 (678)
                         ..|...+      +++.--+.+=..+++ .+...|+|||++|-.+.+...- ....+-   ..++..++++.-.-+-
T Consensus       206 lDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~---k~ia~~~~~~f~~q~~  282 (517)
T COG0661         206 LDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDR---KELAELLVRAFLRQLL  282 (517)
T ss_pred             hCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCH---HHHHHHHHHHHHHHHH
Confidence               2222210      333333333334433 5677899999999888877421 144553   3344444433210121


Q ss_pred             cCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          647 QGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       647 ~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .   .+++|.|..|.|    .++.+.+.|||+..
T Consensus       283 ~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~g  313 (517)
T COG0661         283 R---DGFFHADPHPGNILVRSDGRIVLLDFGIVG  313 (517)
T ss_pred             h---cCccccCCCccceEEecCCcEEEEcCccee
Confidence            2   469999999999    78899999999864

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.42  E-value=0.00065  Score=74.01  Aligned_cols=125  Identities=13%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             ceEEEEEEEccCCEEEEEEEeccCchhh--HHHHHHHHHHhcCCCCcccEEEEEE----cCCeeEEEEecCCC-CCHHHh
Q 038969          546 FGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYIVHHKNLTTLVGYCD----EDTNMGLIYEFMAK-GNLEEH  618 (678)
Q Consensus       546 fG~Vy~g~~~~~g~~VAVK~l~~~~~~~--~~~f~~Ev~~~l~H~NIv~l~g~~~----~~~~~~LV~Ey~~~-GsL~~~  618 (678)
                      -.+.|++....||..++.|+++....+.  ...-.-|+...+.|.|+|+|..++.    ....+++||+|.|+ ++|.++
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~  368 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDL  368 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHH
Confidence            3578999998899999999995443222  2222344455689999999999875    34568999999986 467765


Q ss_pred             hcC---------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          619 LSG---------------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       619 L~~---------------~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      --.               ....++..++.++.|++.||. ++|+   .+...+=|.+++    ...+++|+..|+
T Consensus       369 ~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~-sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i  439 (655)
T KOG3741|consen  369 YFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALY-SIHS---SGLACKTLDLKKILVTGKMRIRISGCGI  439 (655)
T ss_pred             HccCCccccccccccccCCCCchHHHHHHHHHHHHHHHH-HHHh---cCceeecccHhHeEeeCcceEEEecccc
Confidence            421               135778999999999999999 9999   777778888888    444788876664

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.36  E-value=0.0019  Score=63.35  Aligned_cols=119  Identities=17%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             hhhhhcccCCc-eEEEEEEEccCCEEEEEEEeccC---ch------------------hhHHHHHHHHHH--h---cCCC
Q 038969          536 NFEKVIGKGGF-GTVYHGYLEFNGTQVAVKMLSAS---SV------------------QGYKQFQAEVQY--I---VHHK  588 (678)
Q Consensus       536 ~f~~~IG~G~f-G~Vy~g~~~~~g~~VAVK~l~~~---~~------------------~~~~~f~~Ev~~--~---l~H~  588 (678)
                      .|-+.||.|.. |.||+.+.  +|+.+|+|++..-   ..                  .-..-|..|.+.  +   ..+.
T Consensus        40 ~flefLg~g~~~~~V~kv~I--~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~e  117 (207)
T PF13095_consen   40 EFLEFLGHGSHDGYVFKVEI--DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGRE  117 (207)
T ss_pred             eeeeecCCCCceeEEEEEEE--CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcccc
Confidence            35588999999 99999987  7899999993221   00                  011247788777  3   4456


Q ss_pred             Cc--ccEEEEEEcC------------------CeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcC
Q 038969          589 NL--TTLVGYCDED------------------TNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG  648 (678)
Q Consensus       589 NI--v~l~g~~~~~------------------~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~  648 (678)
                      ++  |+.+||..-.                  ....||.||++...         .+...    -+.++.+-|. .+|. 
T Consensus       118 ~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~---------~~~~~----~~~~~~~dl~-~~~k-  182 (207)
T PF13095_consen  118 GLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP---------PLQIR----DIPQMLRDLK-ILHK-  182 (207)
T ss_pred             CceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc---------ccchh----HHHHHHHHHH-HHHH-
Confidence            77  9999997321                  12468888886643         22333    3445666777 8999 


Q ss_pred             CCCCccccCCCCCC-CCCcEEEEeeCCc
Q 038969          649 CCPHICESSSSSNP-HKNIVKLITFSII  675 (678)
Q Consensus       649 ~~~~iiHrDlk~~N-~~~~vkI~DFGla  675 (678)
                        .+|+-+|+++.| .++  ||+|||.+
T Consensus       183 --~gI~~~Dv~~~ny~~G--~lvDfs~~  206 (207)
T PF13095_consen  183 --LGIVPRDVKPRNYRGG--KLVDFSSS  206 (207)
T ss_pred             --CCeeeccCccccccCC--EEEecccC
Confidence              899999999999 544  88999864

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.35  E-value=0.0027  Score=64.14  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=47.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCC--CcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHK--NLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~--NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|..+.||+.    .|..+++|.......  .....+|.+.+  +...  .+.+.++++...+...+|||+++|.+
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~~--~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGFD--KETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCCC--HHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            46899999999984    345678888865432  23345555542  3322  34677788777777889999998863

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.34  E-value=0.00011  Score=77.27  Aligned_cols=79  Identities=29%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             eEEEeeCCCCCCccccchhhh-cCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          381 RIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      .+..|.++.|.+. .+|.+.+ .|.+|..|||..|+++ ++|+.+..|.+|..||||+|.+++ +|.+++++ -+  ..+
T Consensus       229 ~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL--~~L  302 (565)
T KOG0472|consen  229 LLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HL--KFL  302 (565)
T ss_pred             HHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-ee--eeh
Confidence            4556677777766 6777766 7888888888888888 888888888888888888888884 67677665 22  234


Q ss_pred             cccCCC
Q 038969          460 SVDGNP  465 (678)
Q Consensus       460 ~~~~n~  465 (678)
                      ...|||
T Consensus       303 ~leGNP  308 (565)
T KOG0472|consen  303 ALEGNP  308 (565)
T ss_pred             hhcCCc
Confidence            566776

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.30  E-value=0.0012  Score=66.95  Aligned_cols=125  Identities=15%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch----------------------hhHHHHHHHHHHh--cCCC--Cc
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV----------------------QGYKQFQAEVQYI--VHHK--NL  590 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~----------------------~~~~~f~~Ev~~~--l~H~--NI  590 (678)
                      +.+.||-|.=+.||.|... .|.++|||.=+....                      -.+...++|.+.+  +.-.  .+
T Consensus        95 iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            3478999999999999987 899999997543210                      0112234454443  3322  45


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      .+.+++    +..++||||.++-.|...-     ++....-.|+..|.+-+. -+-.   .+|||+|+.+=|    +++.
T Consensus       174 P~P~~~----nRHaVvMe~ieG~eL~~~r-----~~~en~~~il~~il~~~~-~~~~---~GiVHGDlSefNIlV~~dg~  240 (304)
T COG0478         174 PKPIAW----NRHAVVMEYIEGVELYRLR-----LDVENPDEILDKILEEVR-KAYR---RGIVHGDLSEFNILVTEDGD  240 (304)
T ss_pred             CCcccc----ccceeeeehcccceeeccc-----CcccCHHHHHHHHHHHHH-HHHH---cCccccCCchheEEEecCCC
Confidence            555543    5678999999885555431     123333333344444443 2223   789999999999    7789


Q ss_pred             EEEEeeCCc
Q 038969          667 VKLITFSII  675 (678)
Q Consensus       667 vkI~DFGla  675 (678)
                      +.++||--+
T Consensus       241 ~~vIDwPQ~  249 (304)
T COG0478         241 IVVIDWPQA  249 (304)
T ss_pred             EEEEeCccc
Confidence            999999643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.30  E-value=5.5e-05  Score=83.15  Aligned_cols=74  Identities=32%  Similarity=0.381  Sum_probs=61.1

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCC-CChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccc
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGS-VPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGL  456 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~  456 (678)
                      ++++||||.|+|+ .+|..+++|+.|+.|.+.+|+|+=. ||+.+++|.+|+.+..++|.|. -+|+.++.+.+++.
T Consensus       269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK  343 (1255)
T ss_pred             hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence            6777888888887 7888899999999999999988754 8888999999999999988888 78888877765543

>PRK09902 hypothetical protein; Provisional

Probab=97.29  E-value=0.0055  Score=60.60  Aligned_cols=130  Identities=15%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             cccCCceEEEEEEEccCCEEEEEEEeccC---c---hhhHHHHHHHHHHh--cC--CCCcccEEEEEEcC----CeeEEE
Q 038969          541 IGKGGFGTVYHGYLEFNGTQVAVKMLSAS---S---VQGYKQFQAEVQYI--VH--HKNLTTLVGYCDED----TNMGLI  606 (678)
Q Consensus       541 IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~---~~~~~~f~~Ev~~~--l~--H~NIv~l~g~~~~~----~~~~LV  606 (678)
                      -|+||-+-|++-.+  +|+.+=+|+-...   +   +.+...|.+|...+  +.  .-.+.+.+.+...+    -.-.||
T Consensus        26 ~~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LV  103 (216)
T PRK09902         26 YRRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLV  103 (216)
T ss_pred             cCCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEE
Confidence            36788888998766  5667888877522   1   33567788888773  22  22355555322222    236799


Q ss_pred             EecCCC-CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---C-CCc--EEEEeeCCcc
Q 038969          607 YEFMAK-GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---H-KNI--VKLITFSIIK  676 (678)
Q Consensus       607 ~Ey~~~-GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~-~~~--vkI~DFGlar  676 (678)
                      +|-+++ -+|.+++...  .+.+..++..+..++|+.+. -||+   .++.|+|+-+.|   + .+.  ++++||.-+|
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia-~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFK-KMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHH-HHHH---CCCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            997763 4899988653  45678888999999999999 9999   899999999999   2 344  9999998765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.29  E-value=7.2e-05  Score=58.76  Aligned_cols=56  Identities=38%  Similarity=0.487  Sum_probs=46.8

Q ss_pred             cCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          404 TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       404 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++|+.|+|++|+++.--+..+..+++|+.|++++|.++.--|..+..++++..+.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence            47899999999999666688999999999999999999666667777777665543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.23  E-value=0.00019  Score=52.42  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=32.6

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT  417 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~  417 (678)
                      ++++.|+|++|+++ .||+++++|++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36789999999999 78989999999999999999998

...

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=7.8e-05  Score=81.13  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             CeeEEEEecCCCCCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeC
Q 038969          601 TNMGLIYEFMAKGNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFS  673 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFG  673 (678)
                      ..++|.|++|...+|.++|.++   ...++...+.++.|++.|++ |      ++.+|||+||.|    .+..+||.|||
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~-y------k~~ihrdlkp~nif~~~d~q~kIgDFg  401 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVE-Y------KGLIHRDLKPSNIFFSDDDQLKIGDFG  401 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchh-h------ccchhhhccccccccccchhhhhhhhh
Confidence            3588999999999999999754   56889999999999999999 7      468999999999    66689999999


Q ss_pred             Ccc
Q 038969          674 IIK  676 (678)
Q Consensus       674 lar  676 (678)
                      |.-
T Consensus       402 l~t  404 (516)
T KOG1033|consen  402 LVT  404 (516)
T ss_pred             hee
Confidence            853

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.19  E-value=0.0018  Score=72.63  Aligned_cols=129  Identities=15%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-------------------------------------HHHHHHHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-------------------------------------YKQFQAEV  581 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-------------------------------------~~~f~~Ev  581 (678)
                      +.|+.-..|.||+++++ +|+.||||+-+..-...                                     .-+|..|+
T Consensus       167 ~piaaASlaQVhrA~L~-~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLK-NGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEec-CCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            68999999999999998 79999999886642111                                     01134444


Q ss_pred             HH------hcCCCC------cccEEEEEEcCCeeEEEEecCCCCCHHHh--hcCCCCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          582 QY------IVHHKN------LTTLVGYCDEDTNMGLIYEFMAKGNLEEH--LSGANTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       582 ~~------~l~H~N------Iv~l~g~~~~~~~~~LV~Ey~~~GsL~~~--L~~~~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                      +-      .+.|-+      |.+++-  .-.....|+||||+|..+.+.  |.+ ..++...+..-+.+   +   |+++
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~--~~st~RVLtME~~~G~~i~Dl~~i~~-~gi~~~~i~~~l~~---~---~~~q  316 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYW--DLSTKRVLTMEYVDGIKINDLDAIDK-RGISPHDILNKLVE---A---YLEQ  316 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehh--hcCcceEEEEEecCCccCCCHHHHHH-cCCCHHHHHHHHHH---H---HHHH
Confidence            33      144555      333322  223567899999999866554  332 44555544443333   3   2222


Q ss_pred             CCCCCccccCCCCCC---C-----CCcEEEEeeCCccc
Q 038969          648 GCCPHICESSSSSNP---H-----KNIVKLITFSIIKN  677 (678)
Q Consensus       648 ~~~~~iiHrDlk~~N---~-----~~~vkI~DFGlar~  677 (678)
                      -...+++|.|=.|.|   .     +..+.+.|||+.+.
T Consensus       317 If~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  317 IFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             HHhcCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            222579999999999   2     67899999998764

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.10  E-value=0.0015  Score=63.90  Aligned_cols=85  Identities=22%  Similarity=0.320  Sum_probs=66.9

Q ss_pred             cCC-CCcccEEEEEEcCCeeEEEEecCCCCCHHHh---hcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCC
Q 038969          585 VHH-KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEH---LSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSS  660 (678)
Q Consensus       585 l~H-~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~---L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~  660 (678)
                      +++ +++++++|+|-+    .+|.||...+++.+.   +..-...+|..|.+||.++++.++ +++++-...+.-.|+++
T Consensus        16 l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~-~l~~~~~~~~~lcDv~~   90 (188)
T PF12260_consen   16 LQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLE-ELDHGPLGFFYLCDVSP   90 (188)
T ss_pred             cCCCCCCCCeeeECCC----EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHH-HHhcCCCCcEEEeecch
Confidence            554 599999999943    679999987765421   111134699999999999999999 88886555688899999


Q ss_pred             CC----CCCcEEEEeeCC
Q 038969          661 NP----HKNIVKLITFSI  674 (678)
Q Consensus       661 ~N----~~~~vkI~DFGl  674 (678)
                      +|    +++++|++|...
T Consensus        91 ~nfgv~~~~~lk~iDld~  108 (188)
T PF12260_consen   91 DNFGVNDDGRLKLIDLDD  108 (188)
T ss_pred             HHeEEeCCCcEEEEechh
Confidence            99    778999999764

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.00  E-value=0.0074  Score=60.01  Aligned_cols=124  Identities=10%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHH---------HHHHH--hcCC---CCcccEEEEEEc-----
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQ---------AEVQY--IVHH---KNLTTLVGYCDE-----  599 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~---------~Ev~~--~l~H---~NIv~l~g~~~~-----  599 (678)
                      +++.......|.+-.  .+|+.+.+|..........+.|.         +.+..  .++.   ...+.++.+...     
T Consensus        37 kv~k~~~r~~ValIe--i~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~  114 (229)
T PF06176_consen   37 KVFKNTKRNYVALIE--IDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFRY  114 (229)
T ss_pred             EeecCCCccEEEEEE--ECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeeccc
Confidence            344444444555554  37889999988765433222222         12221  1221   222333333322     


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      ....+|+|||++|-.|.++..    ++.    .++..++++|. -||+   .++.|+|..|.|   .++.++++||+..+
T Consensus       115 ~~~~~ll~EYIeG~~l~d~~~----i~e----~~~~ki~~~ik-qlH~---~G~~HGD~hpgNFlv~~~~i~iID~~~k~  182 (229)
T PF06176_consen  115 TSSYVLLMEYIEGVELNDIED----IDE----DLAEKIVEAIK-QLHK---HGFYHGDPHPGNFLVSNNGIRIIDTQGKR  182 (229)
T ss_pred             eeEEEEEEEEecCeecccchh----cCH----HHHHHHHHHHH-HHHH---cCCccCCCCcCcEEEECCcEEEEECcccc
Confidence            234568999999988776642    222    35566778899 9999   899999999999   67779999998654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.00  E-value=0.00049  Score=66.24  Aligned_cols=82  Identities=34%  Similarity=0.425  Sum_probs=33.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhh-hhhhhhhhhhccCCCCCCCCc-ccchhhhcccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLTGNNLEGSVP-AGLLERAKNGL  456 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~ls~N~l~G~iP-~~l~~~~~~~~  456 (678)
                      +.+++.|+|++|+++. |+ .+..|+.|+.|+|++|+++ .+++.+ ..+++|+.|+|++|++..--- ..+..++++. 
T Consensus        41 l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~-  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR-  116 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT---
T ss_pred             hcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc-
Confidence            4688999999999984 43 4778999999999999999 566555 468999999999999974210 1233333333 


Q ss_pred             ccccccCCC
Q 038969          457 LSLSVDGNP  465 (678)
Q Consensus       457 l~l~~~~n~  465 (678)
                       .+...|||
T Consensus       117 -~L~L~~NP  124 (175)
T PF14580_consen  117 -VLSLEGNP  124 (175)
T ss_dssp             -EEE-TT-G
T ss_pred             -eeeccCCc
Confidence             34555675

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.99  E-value=0.0072  Score=60.84  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=80.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh---------HHHH---------------HHHHHHh--c--CCCCc
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---------YKQF---------------QAEVQYI--V--HHKNL  590 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~---------~~~f---------------~~Ev~~~--l--~H~NI  590 (678)
                      -.|+.|.-+.||+|... ++..+|||+........         ...|               .+|...+  +  .+-.+
T Consensus        54 g~istGKEA~Vy~a~~~-~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrv  132 (268)
T COG1718          54 GCISTGKEANVYLAETG-DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRV  132 (268)
T ss_pred             eeecCCcceEEEeeccC-CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            36788999999999865 78899999986542211         1111               2222221  1  13334


Q ss_pred             ccEEEEEEcCCeeEEEEecCCCC-CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCc
Q 038969          591 TTLVGYCDEDTNMGLIYEFMAKG-NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNI  666 (678)
Q Consensus       591 v~l~g~~~~~~~~~LV~Ey~~~G-sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~  666 (678)
                      .+-+++    .+-.|||||+... .-.-.|+. .++...+...+..++.+++. -|-..  .++||+||..=|   .++.
T Consensus       133 P~Pi~~----~~nVLvMEfIg~~g~pAP~LkD-v~~e~~e~~~~~~~~v~~~~-~l~~~--a~LVHgDLSEyNiL~~~~~  204 (268)
T COG1718         133 PEPIAF----RNNVLVMEFIGDDGLPAPRLKD-VPLELEEAEGLYEDVVEYMR-RLYKE--AGLVHGDLSEYNILVHDGE  204 (268)
T ss_pred             CCceee----cCCeEEEEeccCCCCCCCCccc-CCcCchhHHHHHHHHHHHHH-HHHHh--cCcccccchhhheEEECCe
Confidence            444433    2346999999643 11111221 23334467777788888888 44432  679999999999   8889


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +.|+|||-|-
T Consensus       205 p~iID~~QaV  214 (268)
T COG1718         205 PYIIDVSQAV  214 (268)
T ss_pred             EEEEECcccc
Confidence            9999999663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.96  E-value=0.0008  Score=77.69  Aligned_cols=61  Identities=28%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             CCeEEEeeCCCCCCccccch-hhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIIT-YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~-~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      ..++..|+|+.|+|. .+|+ .+.+|..|+.|+||+|.|+ .+|+.+..+..|++|..-+|++.
T Consensus       382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            356777777777776 3444 4677777777777777776 56665555555555555444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.93  E-value=0.00029  Score=82.60  Aligned_cols=63  Identities=27%  Similarity=0.344  Sum_probs=39.3

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccc
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGL  448 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  448 (678)
                      .+..|+|++|.|++ ||..   +..|+.|+|++|+|+ .||+.+.+++.|+.|+|++|+|+|.+|..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            45556666666653 4532   234556666666666 567666667777777777777777666655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.92  E-value=0.00024  Score=74.68  Aligned_cols=90  Identities=26%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++.-+.+|..+..|+.|.|..|++.-.--..|..|..|++|+|.+|+++---|-.+.....++.+
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            58999999999999999989999999999999999999986666677889999999999999997777777666655544


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                        .+-+||..|.
T Consensus       352 --~l~~Np~~Cn  361 (498)
T KOG4237|consen  352 --NLLSNPFNCN  361 (498)
T ss_pred             --ehccCcccCc
Confidence              4568998884

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.89  E-value=0.00041  Score=62.89  Aligned_cols=70  Identities=27%  Similarity=0.383  Sum_probs=50.6

Q ss_pred             CeEEEeeCCCCCCccccchhhh-cCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh
Q 038969          380 PRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA  452 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  452 (678)
                      .+++.++|++|.|. ..|+.|. +.+.++.|+|++|.++ .+|..+..++.|+.||+++|.|. -.|.-+..+.
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~  123 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI  123 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH
Confidence            47778888888887 4455444 3457788888888887 78888888888888888888887 4555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.80  E-value=0.00088  Score=48.62  Aligned_cols=37  Identities=24%  Similarity=0.599  Sum_probs=23.3

Q ss_pred             hhhHHHHHHHHHhhCC-----CCCCCCCCCCCcccccccccCC
Q 038969          336 QQDVDAIMSIKKKYGV-----KKNWQGDPCAPKVYLWQGLNCS  373 (678)
Q Consensus       336 ~~d~~al~~~k~~~~~-----~~~w~g~pc~p~~~~w~gv~C~  373 (678)
                      ++|..||++||+.+..     +.+|+... .+..|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            5789999999999863     46896421 1122359999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.76  E-value=0.02  Score=56.46  Aligned_cols=123  Identities=20%  Similarity=0.349  Sum_probs=84.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc----------------hhhHHHHHHHHHH--h------cCCCCcccEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS----------------VQGYKQFQAEVQY--I------VHHKNLTTLV  594 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~----------------~~~~~~f~~Ev~~--~------l~H~NIv~l~  594 (678)
                      ..||+|+.-.||.-  + +.....||+.....                ....+++.+|+..  .      ..+.+|.+++
T Consensus         7 ~~i~~G~~R~cy~H--P-~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    7 DLIAQGGERDCYQH--P-DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             cccccCCCceEEEC--C-CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            57999999998865  3 55678888887654                1124555666544  1      3378999999


Q ss_pred             EEEEcCCeeEEEEecCCC------CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------
Q 038969          595 GYCDEDTNMGLIYEFMAK------GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------  662 (678)
Q Consensus       595 g~~~~~~~~~LV~Ey~~~------GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------  662 (678)
                      |+..+..-..+|+|.+.+      -+|.++++. ..++. ...+...+..+    ||-+   ..|+.+|++|.|      
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~-~~~~~-~~~~~L~~f~~----~l~~---~~Iv~~dl~~~NIv~~~~  154 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKE-GGLTE-ELRQALDEFKR----YLLD---HHIVIRDLNPHNIVVQRR  154 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHc-CCccH-HHHHHHHHHHH----HHHH---cCCeecCCCcccEEEEec
Confidence            999998889999998743      268888864 34555 44443333333    5555   679999999999      


Q ss_pred             -CCC-cEEEEe-eC
Q 038969          663 -HKN-IVKLIT-FS  673 (678)
Q Consensus       663 -~~~-~vkI~D-FG  673 (678)
                       +.. .+.|+| ||
T Consensus       155 ~~~~~~lvlIDG~G  168 (199)
T PF10707_consen  155 DSGEFRLVLIDGLG  168 (199)
T ss_pred             CCCceEEEEEeCCC
Confidence             233 578887 44

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.68  E-value=0.00046  Score=75.82  Aligned_cols=75  Identities=24%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKN  454 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~  454 (678)
                      ..+..|+|+.|+++..--.++.+|++|+.|+||+|.+....++..+-.++|+.|+|++|+++.--|.++..+..+
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            456667777777765555566677777777777777766666666666677777777777764444444444433

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.68  E-value=0.021  Score=54.55  Aligned_cols=120  Identities=23%  Similarity=0.266  Sum_probs=78.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcc-cEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLT-TLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv-~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.|++|.+|.||+|.+  .|..+|+|+-..++.  ...++.|+++  ++.-.++. +++.|-    .-.+.|||+.|-.
T Consensus        27 ~~~L~KG~~s~Vyl~~~--~~~~~a~Kvrr~ds~--r~~l~kEakiLeil~g~~~~p~vy~yg----~~~i~me~i~G~~   98 (201)
T COG2112          27 EKELAKGTTSVVYLGEW--RGGEVALKVRRRDSP--RRNLEKEAKILEILAGEGVTPEVYFYG----EDFIRMEYIDGRP   98 (201)
T ss_pred             hhhhhcccccEEEEeec--cCceEEEEEecCCcc--hhhHHHHHHHHHHhhhcCCCceEEEec----hhhhhhhhhcCcc
Confidence            36799999999999987  577999999876553  4567777765  34444433 344432    2345599998878


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCC--C---CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSN--P---HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~--N---~~~~vkI~DFGlar  676 (678)
                      |.+.-...   +-.+.++++-. |-.    |-.   .+|-|+.|.--  |   .+..+.|+||.-|+
T Consensus        99 L~~~~~~~---~rk~l~~vlE~-a~~----LD~---~GI~H~El~~~~k~vlv~~~~~~iIDFd~At  154 (201)
T COG2112          99 LGKLEIGG---DRKHLLRVLEK-AYK----LDR---LGIEHGELSRPWKNVLVNDRDVYIIDFDSAT  154 (201)
T ss_pred             hhhhhhcc---cHHHHHHHHHH-HHH----HHH---hccchhhhcCCceeEEecCCcEEEEEccchh
Confidence            87764431   23333333322 333    334   67888888643  2   56689999998775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.65  E-value=0.0053  Score=72.36  Aligned_cols=42  Identities=12%  Similarity=0.201  Sum_probs=29.2

Q ss_pred             hHHHHhhhcCCCCCCchhhHHHHHHHHHhhCC---CC----CCCC--CCCC
Q 038969          320 AEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGV---KK----NWQG--DPCA  361 (678)
Q Consensus       320 a~e~~~~~~~~~~~~~~~d~~al~~~k~~~~~---~~----~w~g--~pc~  361 (678)
                      |++-...+..+..+|.+.++..+.++++.+..   ..    +|.|  +.|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~   96 (754)
T PRK15370         46 AQNCIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCI   96 (754)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccc
Confidence            34444455667788999999999999988742   22    4876  5774

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.64  E-value=0.018  Score=58.52  Aligned_cols=73  Identities=12%  Similarity=0.158  Sum_probs=47.6

Q ss_pred             cccCCc-eEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          541 IGKGGF-GTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       541 IG~G~f-G~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      |-.|.. ..||+...  ++..+.||+.....   ..+..+|+..+  + .+--+.+++++....+..++|||+++|.+|.
T Consensus         6 ~~~g~~~~~v~~~~~--~~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   80 (244)
T cd05150           6 VTEGQSGATVYRLDG--KNPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAA   80 (244)
T ss_pred             cCCCCCcCeEEEEcC--CCCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHh
Confidence            334444 78898865  34678888876542   22345555552  2 2344667788777666789999999987776


Q ss_pred             Hh
Q 038969          617 EH  618 (678)
Q Consensus       617 ~~  618 (678)
                      +.
T Consensus        81 ~~   82 (244)
T cd05150          81 AL   82 (244)
T ss_pred             Hh
Confidence            43

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.60  E-value=0.00057  Score=61.98  Aligned_cols=71  Identities=24%  Similarity=0.396  Sum_probs=62.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA  452 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  452 (678)
                      ++.++.|||++|.++ .+|.++..+++|+.|++++|.|. ..|.-+..|.+|..|+..+|... +||-.+.-..
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~  146 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSS  146 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccc
Confidence            568899999999998 89999999999999999999999 67788888999999999999988 7887754433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.51  E-value=0.0017  Score=68.50  Aligned_cols=78  Identities=29%  Similarity=0.426  Sum_probs=63.6

Q ss_pred             ccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC-CCCCC
Q 038969          370 LNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG-NNLEG  442 (678)
Q Consensus       370 v~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~-N~l~G  442 (678)
                      |.|+..+      .-++..+.|.|..|+++-.-|..|..|.+|+.||||+|+++-.-|+.|..|++|..|-|-+ |+++ 
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            6787654      2356889999999999955555799999999999999999988899999999987666655 8888 


Q ss_pred             CCcccc
Q 038969          443 SVPAGL  448 (678)
Q Consensus       443 ~iP~~l  448 (678)
                      .+|...
T Consensus       130 ~l~k~~  135 (498)
T KOG4237|consen  130 DLPKGA  135 (498)
T ss_pred             hhhhhH
Confidence            677654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.49  E-value=0.0022  Score=75.36  Aligned_cols=75  Identities=24%  Similarity=0.382  Sum_probs=57.8

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ..|..|+|++|.|++ +|..   .++|+.|+||+|+|++ +|..+   .+|+.|+|++|+|+ .||..+..+..+..  +
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~--L  450 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT--V  450 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCe--E
Confidence            467888999998885 6643   3678899999999984 88753   46788999999998 89998887776554  4


Q ss_pred             cccCCC
Q 038969          460 SVDGNP  465 (678)
Q Consensus       460 ~~~~n~  465 (678)
                      .+.+|+
T Consensus       451 dLs~N~  456 (788)
T PRK15387        451 NLEGNP  456 (788)
T ss_pred             ECCCCC
Confidence            456776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.48  E-value=0.00069  Score=74.47  Aligned_cols=67  Identities=27%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      +++..|+|++|+++--=+.+|.-|..|+.|+|++|+++-.--..|-.+++|+.|||+.|.+++.|-+
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            4667777777777654455566666666666666666644444455566666666666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.26  E-value=0.0042  Score=73.15  Aligned_cols=80  Identities=28%  Similarity=0.399  Sum_probs=58.5

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcc--ccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKN--GLL  457 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~--~~l  457 (678)
                      +.++.|+|++|+|+ .+|..+.  +.|+.|+|++|+|+ .+|+.+.  ..|+.|++++|+|+ .+|..+..+...  ...
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~  418 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT  418 (754)
T ss_pred             CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence            57889999999988 5776653  68999999999999 6787764  47999999999998 678765443221  122


Q ss_pred             cccccCCCC
Q 038969          458 SLSVDGNPK  466 (678)
Q Consensus       458 ~l~~~~n~~  466 (678)
                      .+.+.+|+-
T Consensus       419 ~L~L~~Npl  427 (754)
T PRK15370        419 RIIVEYNPF  427 (754)
T ss_pred             EEEeeCCCc
Confidence            345566663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.24  E-value=0.00072  Score=78.04  Aligned_cols=76  Identities=26%  Similarity=0.399  Sum_probs=66.0

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCCh-hhhhhhhhhhhhccCCCCCCCCcccchhhhccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNG  455 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~  455 (678)
                      ..+.++.|.|.+|.|+-..-+-+.+...|+.|+||+|+|+ ++|+ .+.+|..|+.|+||+|.|+ .+|..+..+..+.
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence            3567888999999999998888999999999999999998 6665 5688999999999999999 8998877665443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.23  E-value=0.0033  Score=75.28  Aligned_cols=82  Identities=32%  Similarity=0.350  Sum_probs=52.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++.++.|||++|.=-+.+|.+|++|.+|++|+|+...++ .+|..+.+|+.|.+||+..+.-...+|.-+..+.+++.+.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            456667777766655667777777777777777776666 6677777777777777776655545555444455555544


Q ss_pred             ccc
Q 038969          459 LSV  461 (678)
Q Consensus       459 l~~  461 (678)
                      +..
T Consensus       649 l~~  651 (889)
T KOG4658|consen  649 LPR  651 (889)
T ss_pred             eec
Confidence            443

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=96.15  E-value=0.0076  Score=57.62  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=42.0

Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCCCCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N~~~~vkI~DFGlar  676 (678)
                      |+|.++++.. ..++|.+++.|+.|+++||+ |||+   .+-.+..+.  +.++.+|+  ||+++
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~-~lH~---~~kp~Nil~--~~~~~~~~--fG~~~   57 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALR-ELHR---QAKSGNILL--TWDGLLKL--DGSVA   57 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHHh---cCCcccEeE--cCccceee--ccceE
Confidence            7899999863 56999999999999999999 9999   330000000  07778888  99886

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.06  E-value=0.0021  Score=67.93  Aligned_cols=66  Identities=32%  Similarity=0.316  Sum_probs=41.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcC---CCeeccCCCcCCC----CCChhhhhh-hhhhhhhccCCCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTS---LQALDLSNNSLTG----SVPEFLSEL-HFLRVLNLTGNNLEGSV  444 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~---L~~L~Ls~N~l~G----~iP~~l~~l-~~L~~L~ls~N~l~G~i  444 (678)
                      .++++.|+|++|.+.+..+..+..+..   |+.|+|++|++++    .+...+..+ ++|+.|+|++|.+++..
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            356777777777776666666666555   7777777777663    233344455 66677777777777543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=95.95  E-value=0.0055  Score=76.51  Aligned_cols=68  Identities=25%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG  447 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  447 (678)
                      +++++.|+|++++.-+.+| .++.+++|+.|+|++|.....+|..+++|++|+.|+++++..-+.+|..
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            3455566666554444554 3555666666666665555566666666666666666654444455543

syringae 6; Provisional

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=95.76  E-value=0.17  Score=55.43  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             hhcccCCceEEEEEEEccCC-EEEEEEEeccC------c-hhhHHHHHHHHHHh-----cCCCCcccEEEEEEcCCeeEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNG-TQVAVKMLSAS------S-VQGYKQFQAEVQYI-----VHHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g-~~VAVK~l~~~------~-~~~~~~f~~Ev~~~-----l~H~NIv~l~g~~~~~~~~~L  605 (678)
                      +.||.|.+..||+.... +| +.|.||.-...      . ......+..|.+.+     .....+.+++.+  +....++
T Consensus        32 ~elggGn~N~VyrV~~~-~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~l  108 (401)
T PRK09550         32 REIGDGNLNLVFRVSDT-EGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVT  108 (401)
T ss_pred             eEcCCCceEEEEEEEeC-CCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEE
Confidence            46899999999999987 55 58999985321      1 11233444454442     122457777766  3455789


Q ss_pred             EEecCCCCC
Q 038969          606 IYEFMAKGN  614 (678)
Q Consensus       606 V~Ey~~~Gs  614 (678)
                      ||||+++..
T Consensus       109 VME~L~~~~  117 (401)
T PRK09550        109 VMEDLSDHK  117 (401)
T ss_pred             EEecCCCcc
Confidence            999998643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.75  E-value=0.0015  Score=73.51  Aligned_cols=86  Identities=35%  Similarity=0.422  Sum_probs=61.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCCh----------------------hhhhhhhhhhhhcc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE----------------------FLSELHFLRVLNLT  436 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~----------------------~l~~l~~L~~L~ls  436 (678)
                      ++.+++|||++|+++-.=  .+..|+.|++||||+|.|+ .+|.                      .+.+|++|+.|||+
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            578899999999998432  6888999999999999997 5553                      25568888888999


Q ss_pred             CCCCCCCCcc-cchhhhccccccccccCCCCCcc
Q 038969          437 GNNLEGSVPA-GLLERAKNGLLSLSVDGNPKLCH  469 (678)
Q Consensus       437 ~N~l~G~iP~-~l~~~~~~~~l~l~~~~n~~lC~  469 (678)
                      +|-|+|---- -|+.+..  +..|.+.|||--|+
T Consensus       263 yNll~~hseL~pLwsLs~--L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  263 YNLLSEHSELEPLWSLSS--LIVLWLEGNPLCCA  294 (1096)
T ss_pred             HhhhhcchhhhHHHHHHH--HHHHhhcCCccccC
Confidence            8888763111 1222222  23567889997665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.75  E-value=0.0027  Score=38.92  Aligned_cols=21  Identities=52%  Similarity=0.735  Sum_probs=13.7

Q ss_pred             CCCeeccCCCcCCCCCChhhhh
Q 038969          405 SLQALDLSNNSLTGSVPEFLSE  426 (678)
Q Consensus       405 ~L~~L~Ls~N~l~G~iP~~l~~  426 (678)
                      +|++|||++|+|+ .||+.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777777 66666544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.53  E-value=0.0039  Score=68.64  Aligned_cols=68  Identities=32%  Similarity=0.395  Sum_probs=45.1

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhh
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLER  451 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~  451 (678)
                      -+..|-+++|+++ .+|.+++.+..|..||.|.|++. .+|..++.|.+|+.|++..|++. .+|+++..+
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L  211 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL  211 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence            3555666677765 66777777777777777777776 66777777777776666666666 455555533

>PLN03210 Resistant to P

Probab=95.48  E-value=0.012  Score=73.48  Aligned_cols=80  Identities=21%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+.+++.|+|++|.+. .+|..+..|++|+.|+|++|+..+.+|. ++.+++|+.|+|++|..-..+|..+..+.++..+
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            3568999999999987 6888899999999999999887789986 7889999999999988778999988777766554


Q ss_pred             cc
Q 038969          458 SL  459 (678)
Q Consensus       458 ~l  459 (678)
                      .+
T Consensus       687 ~L  688 (1153)
T PLN03210        687 DM  688 (1153)
T ss_pred             eC
Confidence            43

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.45  E-value=0.0035  Score=63.77  Aligned_cols=60  Identities=32%  Similarity=0.419  Sum_probs=40.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      .|.++.|+||.|++. .+- .+..|.+|+.||||+|.|+ ++-.+-.+|-+.+.|+|++|.+.
T Consensus       306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh
Confidence            467777777777775 222 2666777777777777776 55555556667777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	678
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		6e-17
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		7e-17
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		4e-15
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-14
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-14
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-14
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-14
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-12
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		7e-09
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		6e-08
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		6e-08
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		7e-08
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-07
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-07
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		9e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		3e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		3e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		3e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		3e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		3e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		3e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		3e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		3e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		3e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		3e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		5e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		5e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		5e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		5e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		6e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		6e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		7e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		7e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		7e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		7e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		8e-05
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		9e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		1e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		2e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		2e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		2e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		5e-04
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-04
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-04
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-04
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		5e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-04
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		6e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		7e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		7e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		7e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		7e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		8e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 529 DVAKITNNFEK--VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-- 584
           D+ + TNNF+   +IG G FG VY G L  +G +VA+K  +  S QG ++F+ E++ +  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSF 91
Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN----TLTWEARLRIATEAAQG 640
             H +L +L+G+CDE   M LIY++M  GNL+ HL G++    +++WE RL I   AA+G
Sbjct: 92  CRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARG 151
Query: 641 SH 642
            H
Sbjct: 152 LH 153

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 529 DVAKITNNFEK--VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-- 584
           D+ + TNNF+   +IG G FG VY G L  +G +VA+K  +  S QG ++F+ E++ +  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSF 91
Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN----TLTWEARLRIATEAAQG 640
             H +L +L+G+CDE   M LIY++M  GNL+ HL G++    +++WE RL I   AA+G
Sbjct: 92  CRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARG 151
Query: 641 SH 642
            H
Sbjct: 152 LH 153

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 523 RKFSYSDVAKITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQA 579
           ++FS  ++   ++NF  + ++G+GGFG VY G L  +GT VAVK L     QG + QFQ 
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERXQGGELQFQT 84
Query: 580 EVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN----LEEHLSGANTLTWEARLRI 633
           EV+ I    H+NL  L G+C   T   L+Y +MA G+    L E       L W  R RI
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 144
Query: 634 ATEAAQGSHSAFDQGCCPHI 653
           A  +A+G     D  C P I
Sbjct: 145 ALGSARGLAYLHDH-CDPKI 163

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 523 RKFSYSDVAKITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQA 579
           ++FS  ++   ++NF  + ++G+GGFG VY G L  +G  VAVK L     QG + QFQ 
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLA-DGXLVAVKRLKEERTQGGELQFQT 76
Query: 580 EVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN----LEEHLSGANTLTWEARLRI 633
           EV+ I    H+NL  L G+C   T   L+Y +MA G+    L E       L W  R RI
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136
Query: 634 ATEAAQGSHSAFDQGCCPHI 653
           A  +A+G     D  C P I
Sbjct: 137 ALGSARGLAYLHDH-CDPKI 155

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 19/133 (14%)
Query: 525 FSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSA----SSVQ 572
           FS+ ++  +TNNF++         +G+GGFG VY GY+  N T VAVK L+A    ++ +
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEE 72
Query: 573 GYKQFQAEVQYIV--HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GANTLTW 627
             +QF  E++ +    H+NL  L+G+  +  ++ L+Y +M  G+L + LS   G   L+W
Sbjct: 73  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 628 EARLRIATEAAQG 640
             R +IA  AA G
Sbjct: 133 HMRCKIAQGAANG 145

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 19/133 (14%)
Query: 525 FSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSA----SSVQ 572
           FS+ ++  +TNNF++         +G+GGFG VY GY+  N T VAVK L+A    ++ +
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEE 72
Query: 573 GYKQFQAEVQYIV--HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GANTLTW 627
             +QF  E++ +    H+NL  L+G+  +  ++ L+Y +M  G+L + LS   G   L+W
Sbjct: 73  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 628 EARLRIATEAAQG 640
             R +IA  AA G
Sbjct: 133 HMRCKIAQGAANG 145

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 19/133 (14%)
Query: 525 FSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSA----SSVQ 572
           FS+ ++  +TNNF++         +G+GGFG VY GY+  N T VAVK L+A    ++ +
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEE 66
Query: 573 GYKQFQAEVQYIV--HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GANTLTW 627
             +QF  E++ +    H+NL  L+G+  +  ++ L+Y +M  G+L + LS   G   L+W
Sbjct: 67  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 126
Query: 628 EARLRIATEAAQG 640
             R +IA  AA G
Sbjct: 127 HMRCKIAQGAANG 139

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 19/133 (14%)
Query: 525 FSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSA----SSVQ 572
           FS+ ++  +TNNF++          G+GGFG VY GY+  N T VAVK L+A    ++ +
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEE 63
Query: 573 GYKQFQAEVQYIV--HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS---GANTLTW 627
             +QF  E++      H+NL  L+G+  +  ++ L+Y +   G+L + LS   G   L+W
Sbjct: 64  LKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSW 123
Query: 628 EARLRIATEAAQG 640
             R +IA  AA G
Sbjct: 124 HXRCKIAQGAANG 136

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 529 DVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLS-------ASSVQGYKQFQAEV 581
           D A++T   E++IG GGFG VY  +  + G +VAVK          + +++  +Q +A++
Sbjct: 5   DFAELT--LEEIIGIGGFGKVYRAF--WIGDEVAVKAARHDPDEDISQTIENVRQ-EAKL 59
Query: 582 QYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGS 641
             ++ H N+  L G C ++ N+ L+ EF   G L   LSG   +  +  +  A + A+G 
Sbjct: 60  FAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG-KRIPPDILVNWAVQIARGM 118
Query: 642 HSAFDQGCCPHICESSSSSN 661
           +   D+   P I     SSN
Sbjct: 119 NYLHDEAIVPIIHRDLKSSN 138

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 524 KFSYSDVAKITNN---FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------- 573
           +F  S +  + +N   +EK IGKGGFG V+ G L  + + VA+K L     +G       
Sbjct: 7   EFPKSRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEK 66
Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL-EEHLSGANTLTWEAR 630
           +++FQ EV  +  ++H N+  L G       M  + EF+  G+L    L  A+ + W  +
Sbjct: 67  FQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLDKAHPIKWSVK 124
Query: 631 LRIATEAAQG 640
           LR+  + A G
Sbjct: 125 LRLMLDIALG 134

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 524 KFSYSDVAKITNN---FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------- 573
           +F  S +  + +N   +EK IGKGGFG V+ G L  + + VA+K L     +G       
Sbjct: 7   EFPKSRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEK 66
Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL-EEHLSGANTLTWEAR 630
           +++FQ EV  +  ++H N+  L G       M  + EF+  G+L    L  A+ + W  +
Sbjct: 67  FQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLDKAHPIKWSVK 124
Query: 631 LRIATEAAQG 640
           LR+  + A G
Sbjct: 125 LRLMLDIALG 134

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 524 KFSYSDVAKITNN---FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------- 573
           +F  S +  + +N   +EK IGKGGFG V+ G L  + + VA+K L     +G       
Sbjct: 7   EFPKSRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEK 66
Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL-EEHLSGANTLTWEAR 630
           +++FQ EV  +  ++H N+  L G       M  + EF+  G+L    L  A+ + W  +
Sbjct: 67  FQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLDKAHPIKWSVK 124
Query: 631 LRIATEAAQG 640
           LR+  + A G
Sbjct: 125 LRLMLDIALG 134

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK--QFQAEVQYI--VHHKNLT 591
           N ++ IG G FGTV+    E++G+ VAVK+L        +  +F  EV  +  + H N+ 
Sbjct: 40  NIKEKIGAGSFGTVHRA--EWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEE--HLSGAN-TLTWEARLRIATEAAQG 640
             +G   +  N+ ++ E++++G+L    H SGA   L    RL +A + A+G
Sbjct: 98  LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKG 149

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK--QFQAEVQYI--VHHKNLT 591
           N ++ IG G FGTV+    E++G+ VAVK+L        +  +F  EV  +  + H N+ 
Sbjct: 40  NIKEKIGAGSFGTVHRA--EWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEE--HLSGAN-TLTWEARLRIATEAAQG 640
             +G   +  N+ ++ E++++G+L    H SGA   L    RL +A + A+G
Sbjct: 98  LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKG 149

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 535 NNFEKV--IGKGGFGTVYH----GYLEFNG-TQVAVKML---SASSVQGYKQFQAEVQYI 584
           NN E V  IG+G FG V+     G L +   T VAVKML   +++ +Q   Q +A +   
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS--GANTLTWEARLRIATEAAQGSH 642
             + N+  L+G C     M L++E+MA G+L E L     +T+   +   ++T A   S 
Sbjct: 107 FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 166
Query: 643 SAFDQGCCPHIC 654
                 C   +C
Sbjct: 167 GPPPLSCAEQLC 178

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   A S + + + +AEV   + H  L  L
Sbjct: 8   TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQL 65
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C E   + L++EFM  G L ++L     L   E  L +  +  +G  +  ++ C  H
Sbjct: 66  YGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MAYLEEACVIH 124

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   A S + + + +AEV   + H  L  L
Sbjct: 10  TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQL 67
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C E   + L++EFM  G L ++L     L   E  L +  +  +G  +  ++ C  H
Sbjct: 68  YGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MAYLEEACVIH 126

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   A S + + + +AEV   + H  L  L
Sbjct: 13  TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQL 70
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C E   + L++EFM  G L ++L     L   E  L +  +  +G  +  ++ C  H
Sbjct: 71  YGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MAYLEEACVIH 129

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQ-AEVQYIVHHKNLTTLV 594
            F + IG G FG V+ GY   N  +VA+K +   S+      + AEV   + H  L  L 
Sbjct: 30  TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLY 88
Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
           G C E   + L++EFM  G L ++L     L   E  L +  +  +G  +  ++ C  H
Sbjct: 89  GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MAYLEEACVIH 146

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   A S + + + +AEV   + H  L  L
Sbjct: 10  TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQL 67
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQG 640
            G C E   + L++EFM  G L ++L     L   E  L +  +  +G
Sbjct: 68  YGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 115

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYIVHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   A S + + + +AEV   + H  L  L
Sbjct: 11  TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIE-EAEVMMKLSHPKLVQL 68
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C E   + L+ EFM  G L ++L     L   E  L +  +  +G  +  ++ C  H
Sbjct: 69  YGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MAYLEEACVIH 127

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQV--AVK-MLSASSVQGYKQFQAEVQYIV---HHKNL 590
           F+ VIG+G FG V    ++ +G ++  A+K M   +S   ++ F  E++ +    HH N+
Sbjct: 19  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 78
Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAA 638
             L+G C+    + L  E+   GNL + L  +  L  +    IA   A
Sbjct: 79  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 126

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G FG VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECN 102

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQV--AVK-MLSASSVQGYKQFQAEVQYIV---HHKNL 590
           F+ VIG+G FG V    ++ +G ++  A+K M   +S   ++ F  E++ +    HH N+
Sbjct: 26  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 85
Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAA 638
             L+G C+    + L  E+   GNL + L  +  L  +    IA   A
Sbjct: 86  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 133

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQV--AVK-MLSASSVQGYKQFQAEVQYIV---HHKNL 590
           F+ VIG+G FG V    ++ +G ++  A+K M   +S   ++ F  E++ +    HH N+
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 88
Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAA 638
             L+G C+    + L  E+   GNL + L  +  L  +    IA   A
Sbjct: 89  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 136

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 85  REPPFYIIIEFMTYGNLLDYLRECN 109

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 81  REPPFYIIIEFMTYGNLLDYLRECN 105

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 78  REPPFYIIIEFMTYGNLLDYLRECN 102

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECN 104

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECN 109

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECN 104

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 81  REPPFYIITEFMTYGNLLDYLRECN 105

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECN 109

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 83
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 84  REPPFYIITEFMTYGNLLDYLRECN 108

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECN 104

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECN 104

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECN 106

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECN 109

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECN 104

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECN 102

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECN 109

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECN 104

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 286
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 287 REPPFYIITEFMTYGNLLDYLRECN 311

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECN 106

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 92
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 93  REPPFYIITEFMTYGNLLDYLRECN 117

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECN 106

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    +I EFM  GNL ++L   N
Sbjct: 326 REPPFYIITEFMTYGNLLDYLRECN 350

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQAEVQYIVH--HKNLTTLVGYC 597
           IG+G FG V+ G L  + T VAVK    +     K +F  E + +    H N+  L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 598 DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIAT------EAAQGSHSAFDQGCCP 651
            +   + ++ E +  G+    L      T  ARLR+ T      +AA G     +  CC 
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLR-----TEGARLRVKTLLQMVGDAAAGM-EYLESKCCI 235
Query: 652 HI-CESSSSSNPHKNIVKLITFSIIKNN 678
           H    + +     KN++K+  F + +  
Sbjct: 236 HRDLAARNCLVTEKNVLKISDFGMSREE 263

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQAEVQYIVH--HKNLTTLVGYC 597
           IG+G FG V+ G L  + T VAVK    +     K +F  E + +    H N+  L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 598 DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIAT------EAAQGSHSAFDQGCCP 651
            +   + ++ E +  G+    L      T  ARLR+ T      +AA G     +  CC 
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLR-----TEGARLRVKTLLQMVGDAAAGM-EYLESKCCI 235
Query: 652 HI-CESSSSSNPHKNIVKLITFSIIKNN 678
           H    + +     KN++K+  F + +  
Sbjct: 236 HRDLAARNCLVTEKNVLKISDFGMSREE 263

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY-C 597
           + IGKG FG V  G  ++ G +VAVK +   +       +A V   + H NL  L+G   
Sbjct: 12  QTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 69
Query: 598 DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +E   + ++ E+MAKG+L ++L   G + L  +  L+ + +  + 
Sbjct: 70  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 114

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYIVHHKNLTTLVGY 596
           K +G G FG V+ GY   N T+VAVK L     SVQ + + +A +   + H  L  L   
Sbjct: 18  KKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLE-EANLMKTLQHDKLVRLYAV 75
Query: 597 CDEDTNMGLIYEFMAKGNLEEHL 619
             ++  + +I EFMAKG+L + L
Sbjct: 76  VTKEEPIYIITEFMAKGSLLDFL 98

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY-C 597
           + IGKG FG V  G  ++ G +VAVK +   +       +A V   + H NL  L+G   
Sbjct: 199 QTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 256
Query: 598 DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +E   + ++ E+MAKG+L ++L   G + L  +  L+ + +  + 
Sbjct: 257 EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 301

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 537 FEKVIGKGGFGTV----YHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNL 590
           F + +GKG FG+V    Y    +  G  VAVK L  S+ +  + F+ E++ +  + H N+
Sbjct: 17  FLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 76
Query: 591 TTLVGYC--DEDTNMGLIYEFMAKGNLEEHLS 620
               G C      N+ LI EF+  G+L E+L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ 108

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY-C 597
           + IGKG FG V  G  ++ G +VAVK +   +       +A V   + H NL  L+G   
Sbjct: 18  QTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 75
Query: 598 DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +E   + ++ E+MAKG+L ++L   G + L  +  L+ + +  + 
Sbjct: 76  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 120

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 541 IGKGGFGTV----YHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHHKNLTTL 593
           +G+G FG V    Y    +  G QVAVK L   S   +    + E++ +  ++H+N+   
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 594 VGYCDEDTNMG--LIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
            G C ED   G  LI EF+  G+L+E+L    N +  + +L+ A +  +G
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKG 138

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGY-C 597
           + IGKG FG V  G  ++ G +VAVK +   +       +A V   + H NL  L+G   
Sbjct: 27  QTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 84
Query: 598 DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
           +E   + ++ E+MAKG+L ++L   G + L  +  L+ + +  + 
Sbjct: 85  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 129

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 541 IGKGGFGTV----YHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHHKNLTTL 593
           +G+G FG V    Y    +  G QVAVK L   S   +    + E++ +  ++H+N+   
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 594 VGYCDEDTNMG--LIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
            G C ED   G  LI EF+  G+L+E+L    N +  + +L+ A +  +G
Sbjct: 77  KGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKG 126

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+ TL+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 34  KPLGEGAFGQVV--LAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 91
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 127

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 19  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 76
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 112

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 34  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 91
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 127

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 23  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 80
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 81  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 116

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 27  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 84
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 85  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 120

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 26  KPLGEGAFGQVV--LAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 83
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 84  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 119

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 34  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 91
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 127

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 34  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 91
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 127

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYIVHHKNLTTLVGY 596
           K +G G FG V+ GY   N T+VAVK L     SVQ + + +A +   + H  L  L   
Sbjct: 19  KRLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLE-EANLMKTLQHDKLVRLYAV 76
Query: 597 CDEDTNMGLIYEFMAKGNLEEHLS 620
              +  + +I E+MAKG+L + L 
Sbjct: 77  VTREEPIYIITEYMAKGSLLDFLK 100

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 541 IGKGGFGTVY----HGYL-EFNGTQVAVKMLSASSVQGYKQFQ--AEVQYIVHHKNLTTL 593
           +G+G FG V+    H  L E +   VAVK L  +S    + FQ  AE+  ++ H+++   
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL 619
            G C E   + +++E+M  G+L   L
Sbjct: 86  FGVCTEGRPLLMVFEYMRHGDLNRFL 111

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 539 KVIGKGGFGTVYHGYLEFNG---------TQVAVKMLSASSVQ-GYKQFQAEVQY---IV 585
           K +G+G FG V     E  G         T+VAVKML + + +       +E++    I 
Sbjct: 75  KPLGEGAFGQVVLA--EAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 132
Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG 621
            HKN+  L+G C +D  + +I E+ +KGNL E+L  
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 168

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 541 IGKGGFGTVY----HGYL-EFNGTQVAVKMLSASSVQGYKQFQ--AEVQYIVHHKNLTTL 593
           +G+G FG V+    H  L E +   VAVK L  +S    + FQ  AE+  ++ H+++   
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL 619
            G C E   + +++E+M  G+L   L
Sbjct: 80  FGVCTEGRPLLMVFEYMRHGDLNRFL 105

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 541 IGKGGFGTVY----HGYL-EFNGTQVAVKMLSASSVQGYKQFQ--AEVQYIVHHKNLTTL 593
           +G+G FG V+    H  L E +   VAVK L  +S    + FQ  AE+  ++ H+++   
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHL 619
            G C E   + +++E+M  G+L   L
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFL 134

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 405 SLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG 447
           +L  LDL NN + G++P+ L++L FL  LN++ NNL G +P G
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSASSVQGYKQ---FQAEVQYIVHHKNL 590
            E+VIG G FG V  G+L+  G +   VA+K L +   +  ++    +A +     H N+
Sbjct: 11  IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 70
Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
             L G   + T + +I EFM  G+L+  L
Sbjct: 71  IHLEGVVTKSTPVMIITEFMENGSLDSFL 99

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 87  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 206
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 207 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 252

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQ---VAVKMLSASSVQGYKQ---FQAEVQYIVHHKNL 590
            E+VIG G FG V  G+L+  G +   VA+K L +   +  ++    +A +     H N+
Sbjct: 37  IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 96
Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
             L G   + T + +I EFM  G+L+  L
Sbjct: 97  IHLEGVVTKSTPVMIITEFMENGSLDSFL 125

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 519 ELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQG 573
           E+  RKF+  D      +  + +GKG FG VY    + N   +A+K+L  S      V+ 
Sbjct: 5   EMPKRKFTIDDF-----DIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEH 59
Query: 574 YKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRI 633
             + + E+Q  + H N+  +  Y  +   + L+ EF  +G L + L        +     
Sbjct: 60  QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATF 119
Query: 634 ATEAAQGSHSAFDQ 647
             E A   H   ++
Sbjct: 120 MEELADALHYCHER 133

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 519 ELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQG 573
           E+  RKF+  D      +  + +GKG FG VY    + N   +A+K+L  S      V+ 
Sbjct: 6   EMPKRKFTIDDF-----DIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEH 60
Query: 574 YKQFQAEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRI 633
             + + E+Q  + H N+  +  Y  +   + L+ EF  +G L + L        +     
Sbjct: 61  QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATF 120
Query: 634 ATEAAQGSHSAFDQ 647
             E A   H   ++
Sbjct: 121 MEELADALHYCHER 134

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++++  F + ++
Sbjct: 161 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLARD 206

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 32/173 (18%)
Query: 537 FEKVIGKGGFGTVYHGY---LEFNGT--QVAVKMLSASSVQGYKQ-FQAEVQYIVH---H 587
           F KV+G G FG V +     +   G   QVAVKML   +    ++   +E++ +     H
Sbjct: 49  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH 108
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA-----------------------NT 624
           +N+  L+G C     + LI+E+   G+L  +L                          N 
Sbjct: 109 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 168
Query: 625 LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
           LT+E  L  A + A+G      + C      + +    H  +VK+  F + ++
Sbjct: 169 LTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARD 221

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 33  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 92
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 93  KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 152
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 153 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 198

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 30  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 89
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 90  KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 149
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 150 SCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 195

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQGYKQFQAEVQYIVHH 587
           ++FE  + +GKG FG VY    + +   VA+K+L  S      V+   + + E+Q  +HH
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
            N+  L  Y  +   + LI E+  +G L + L  + T   +    I  E A  
Sbjct: 83  PNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADA 135

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 539 KVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASSVQ-GYKQFQAEVQY---IVHH 587
           K +G+G FG V                  VAVKML   + +       +E++    I  H
Sbjct: 28  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 87
Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSG----------------ANTLTWEARL 631
           KN+  L+G C +D  + +I E+ +KGNL E+L                     +T++  +
Sbjct: 88  KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 147
Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
               + A+G      Q C      + +      N++K+  F + ++
Sbjct: 148 SCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLARD 193

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 541 IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF--QAEVQYIVHHKNLTTLVGYCD 598
           +G G +G VY G  +     VAVK L   +++  ++F  +A V   + H NL  L+G C 
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCT 98
Query: 599 EDTNMGLIYEFMAKGNLEEHLSGAN 623
            +    ++ E+M  GNL ++L   N
Sbjct: 99  LEPPFYIVTEYMPYGNLLDYLRECN 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	678
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-57
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-44
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-42
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-27
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-22
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-22
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	9e-22
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-21
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-20
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-20
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-20
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-20
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-20
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-19
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-19
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-19
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-17
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-15
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-15
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-14
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-14
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-14
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-14
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-14
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-14
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-14
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-14
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	6e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-14
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-13
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-13
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-13
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-13
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-13
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-13
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-13
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-13
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-13
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	7e-13
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-13
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-13
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	8e-13
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-12
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-12
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-12
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-12
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	6e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	9e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-08
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	7e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	8e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	8e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-04
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-04
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	4e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	6e-04
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-04
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	7e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	7e-04
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  194 bits (496), Expect = 7e-57
 Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 9/130 (6%)

Query: 519 ELKNRKFSYSDVAKITNNFEK--VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ 576
             ++ +    D+ + TNNF+   +IG G FG VY G L  +G +VA+K  +  S QG ++
Sbjct: 23  PFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEE 81

Query: 577 FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN----TLTWEAR 630
           F+ E++ +    H +L +L+G+CDE   M LIY++M  GNL+ HL G++    +++WE R
Sbjct: 82  FETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQR 141

Query: 631 LRIATEAAQG 640
           L I   AA+G
Sbjct: 142 LEICIGAARG 151

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  160 bits (407), Expect = 2e-44
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 19/139 (13%)

Query: 519 ELKNRKFSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSA-- 568
           + +   FS+ ++  +TNNF++         +G+GGFG VY GY+  N T VAVK L+A  
Sbjct: 9   DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMV 66

Query: 569 --SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN- 623
             ++ +  +QF  E++ +    H+NL  L+G+  +  ++ L+Y +M  G+L + LS  + 
Sbjct: 67  DITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG 126

Query: 624 --TLTWEARLRIATEAAQG 640
              L+W  R +IA  AA G
Sbjct: 127 TPPLSWHMRCKIAQGAANG 145

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  155 bits (394), Expect = 2e-42
 Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 523 RKFSYSDVAKITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK-QFQA 579
           ++FS  ++   ++NF  + ++G+GGFG VY G L  +GT VAVK L     QG + QFQ 
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQT 76

Query: 580 EVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN----TLTWEARLRI 633
           EV+ I    H+NL  L G+C   T   L+Y +MA G++   L         L W  R RI
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 634 ATEAAQGS---HSAFDQGCCPHI 653
           A  +A+G    H      C P I
Sbjct: 137 ALGSARGLAYLH----DHCDPKI 155

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  113 bits (284), Expect = 1e-27
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 525 FSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ 582
               ++   +   +  +V  +G FG V+    +     VAVK+      Q + Q + EV 
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKA--QLLNEYVAVKIFPIQDKQSW-QNEYEVY 70

Query: 583 YI--VHHKNLTTLVGYCDEDTNMG----LIYEFMAKGNLEEHLSGANTLTWEARLRIATE 636
            +  + H+N+   +G     T++     LI  F  KG+L + L   N ++W     IA  
Sbjct: 71  SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA-NVVSWNELCHIAET 129

Query: 637 AAQG 640
            A+G
Sbjct: 130 MARG 133

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 525 FSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ 582
            + S+ +   +N +  ++IG+G +G VY G L  +   VAVK+ S ++ Q +   +  + 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANRQNFINEK-NIY 59

Query: 583 YI--VHHKNLTTLVGYCDEDTNMG-----LIYEFMAKGNLEEHLSGANTLTWEARLRIAT 635
            +  + H N+   +   +  T  G     L+ E+   G+L ++LS  +T  W +  R+A 
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSL-HTSDWVSSCRLAH 118

Query: 636 EAAQG 640
              +G
Sbjct: 119 SVTRG 123

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI--VHHKNLTT 592
            ++ IG G FGTV+     ++G+ VAVK+L           +F  EV  +  + H N+  
Sbjct: 41  IKEKIGAGSFGTVHRAE--WHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHL---SGANTLTWEARLRIATEAAQG 640
            +G   +  N+ ++ E++++G+L   L        L    RL +A + A+G
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKG 149

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 94.6 bits (236), Expect = 9e-22
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ----GYKQFQAEVQYI--VHHKNL 590
            E++IG GGFG VY     + G +VAVK       +      +  + E +    + H N+
Sbjct: 11  LEEIIGIGGFGKVYRA--FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI 68

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
             L G C ++ N+ L+ EF   G L   LSG   +  +  +  A + A+G
Sbjct: 69  IALRGVCLKEPNLCLVMEFARGGPLNRVLSG-KRIPPDILVNWAVQIARG 117

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-------YKQFQAEVQY--IVHH 587
           +EK IGKGGFG V+ G L  + + VA+K L     +G       +++FQ EV     ++H
Sbjct: 23  YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNH 82

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN-TLTWEARLRIATEAAQG 640
            N+  L G       M  + EF+  G+L   L      + W  +LR+  + A G
Sbjct: 83  PNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALG 134

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLV 594
            E+V+G+G FG V     ++    VA+K + + S +  K F  E++    V+H N+  L 
Sbjct: 12  VEEVVGRGAFGVVCKA--KWRAKDVAIKQIESESER--KAFIVELRQLSRVNHPNIVKLY 67

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHLSGAN---TLTWEARLRIATEAAQG 640
           G C     + L+ E+   G+L   L GA      T    +    + +QG
Sbjct: 68  GACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG 114

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI--VHHKNLTT 592
             ++IGKG FG VYHG   ++G  VA++++          K F+ EV       H+N+  
Sbjct: 37  IGELIGKGRFGQVYHGR--WHGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVL 93

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT-LTWEARLRIATEAAQG 640
            +G C    ++ +I        L   +  A   L      +IA E  +G
Sbjct: 94  FMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKG 142

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQY--IVHHKNLT 591
           NF   + +   G ++ G   + G  + VK+L          + F  E     I  H N+ 
Sbjct: 13  NFLTKLNENHSGELWKGR--WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVL 70

Query: 592 TLVGYCDE--DTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRIATEAAQG 640
            ++G C      +  LI  +M  G+L   L       +     ++ A + A+G
Sbjct: 71  PVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARG 123

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 91.0 bits (226), Expect = 5e-20
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ----YIVHHKNLTT 592
            ++ IGKG FG V+ G  ++ G +VAVK+ S+   +  + +  E +     ++ H+N+  
Sbjct: 46  LQESIGKGRFGEVWRG--KWRGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILG 100

Query: 593 LVGYC----DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
            +          T + L+ ++   G+L ++L+   T+T E  +++A   A G
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR-YTVTVEGMIKLALSTASG 151

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 517 SWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ 576
                   F  SD+        +V+GKG FG          G  + +K L     +  + 
Sbjct: 4   HRI-----FRPSDL-----IHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRT 53

Query: 577 FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRI 633
           F  EV+ +  + H N+   +G   +D  +  I E++  G L   + S  +   W  R+  
Sbjct: 54  FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSF 113

Query: 634 ATEAAQG 640
           A + A G
Sbjct: 114 AKDIASG 120

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ----YIVHHKNLTT 592
             + +GKG +G V+ G   + G  VAVK+ S+   +  K +  E +     ++ H+N+  
Sbjct: 12  LLECVGKGRYGEVWRG--SWQGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILG 66

Query: 593 LVGYC----DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGS---HS-A 644
            +          T + LI  +   G+L ++L    TL   + LRI    A G    H   
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL-TTLDTVSCLRIVLSIASGLAHLHIEI 125

Query: 645 FDQGCCPHI 653
           F     P I
Sbjct: 126 FGTQGKPAI 134

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ-YI---VHHKNLTT 592
             K IGKG +G V+ G  ++ G +VAVK+           +  E + Y    + H+N+  
Sbjct: 41  MVKQIGKGRYGEVWMG--KWRGEKVAVKVFFT---TEEASWFRETEIYQTVLMRHENILG 95

Query: 593 LVGYC----DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
            +          T + LI ++   G+L ++L    TL  ++ L++A  +  G
Sbjct: 96  FIAADIKGTGSWTQLYLITDYHENGSLYDYLKS-TTLDAKSMLKLAYSSVSG 146

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI--VHHKNLTT 592
             + IG G FGTVY G   ++G  VAVKML+ ++      + F+ EV  +    H N+  
Sbjct: 28  VGQRIGSGSFGTVYKGK--WHGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
            +GY      + ++ ++    +L  HL +       +  + IA + A+G
Sbjct: 85  FMGYSTAP-QLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARG 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 6e-18
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
                 ++L+ + ++ ++   +    +L  LDL NN + G++P+ L++L FL  LN++ N
Sbjct: 220 DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 439 NLEGSVPA-GLLERAKNGLLSLSVDGNPKLC 468
           NL G +P  G L+R        +   N  LC
Sbjct: 279 NLCGEIPQGGNLQR----FDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 42/166 (25%)

Query: 333 LTSQQDVDAIMSIKKKYG---VKKNWQG--DPCAPKVYLWQGLNCSYDGNELPRIISLNL 387
           L + QD  A++ IKK  G      +W    D C      W G+ C  D     R+ +L+L
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT---WLGVLCDTDTQ-TYRVNNLDL 57

Query: 388 SSSGI---------------------------SGEIITYIFSLTSLQALDLSNNSLTGSV 420
           S   +                            G I   I  LT L  L +++ +++G++
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 421 PEFLSELHFLRVLNLTGNNLEGSVPA--GLLERAKNGLLSLSVDGN 464
           P+FLS++  L  L+ + N L G++P     L      L+ ++ DGN
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN----LVGITFDGN 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++  L ++ + +SG I  ++  + +L  LD S N+L+G++P  +S L  L  +   GN
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 439 NLEGSVPAGL 448
            + G++P   
Sbjct: 160 RISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFL-RVLNLTG 437
           +  +++L+ S + +SG +   I SL +L  +    N ++G++P+       L   + ++ 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 438 NNLEGSVPAGLLERAKNGLLSLSV 461
           N L G +P           L+L+ 
Sbjct: 184 NRLTGKIPPTF------ANLNLAF 201

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 382 IISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
             S+ +S + ++G+I     +L +L  +DLS N L G            + ++L  N+L 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 442 GSVP 445
             + 
Sbjct: 235 FDLG 238

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 8e-18
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            +P +  LNL  + ISG I   +  L  L  LDLS+N L G +P+ +S L  L  ++L+ 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 438 NNLEGSVPAGLLERAKNGLLSL---SVDGNPKLC 468
           NNL G +P            +        NP LC
Sbjct: 714 NNLSGPIPEM------GQFETFPPAKFLNNPGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           N    +  L L ++G +G+I   + + + L +L LS N L+G++P  L  L  LR L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N LEG +P  L+      L +L +D N
Sbjct: 451 LNMLEGEIPQELMY--VKTLETLILDFN 476

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 6e-15
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 379 LPRIISLNLSSSGISGEI-ITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF-LRVLNLT 436
              + SL LSS+  SGE+ +  +  +  L+ LDLS N  +G +PE L+ L   L  L+L+
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            NN  G +   L +  KN L  L +  N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 6e-15
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 16/98 (16%)

Query: 354 NWQG--DPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGIS---GEIITYIFSLTSLQA 408
           +W    +PC      + G+ C  D     ++ S++LSS  ++     + + + SLT L++
Sbjct: 32  DWSSNKNPCT-----FDGVTCRDD-----KVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81

Query: 409 LDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA 446
           L LSN+ + GSV  F      L  L+L+ N+L G V  
Sbjct: 82  LFLSNSHINGSVSGFKC-SASLTSLDLSRNSLSGPVTT 118

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 8e-15
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L++SS+  S  I  ++   ++LQ LD+S N L+G     +S    L++LN++ N
Sbjct: 199 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
              G +P   L+     L  LS+  N
Sbjct: 258 QFVGPIPPLPLKS----LQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 9e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L++S + +SG+    I + T L+ L++S+N   G +P     L  L+ L+L  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
              G +P  L       L  L + GN
Sbjct: 280 KFTGEIPDFLSGACDT-LTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L+L+ +  +GEI  ++  +  +L  LDLS N   G+VP F      L  L L+ 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NN  G +P   L + +  L  L +  N
Sbjct: 328 NNFSGELPMDTLLKMRG-LKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 3e-14
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +    +  L +S + ISG++   +    +L+ LD+S+N+ +  +P  L +   L+ L+++
Sbjct: 175 DGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 437 GNNLEGSVPAGL 448
           GN L G     +
Sbjct: 232 GNKLSGDFSRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 3e-14
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           N L      N++S    G       +  S+  LD+S N L+G +P+ +  + +L +LNL 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 437 GNNLEGSVPAGL 448
            N++ GS+P  +
Sbjct: 665 HNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 3e-14
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              ++SL+LS + +SG I + + SL+ L+ L L  N L G +P+ L  +  L  L L  N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 439 NLEGSVPAGL 448
           +L G +P+GL
Sbjct: 477 DLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 4e-14
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            +  + +L L  + ++GEI + + + T+L  + LSNN LTG +P+++  L  L +L L+ 
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 438 NNLEGSVPAGL 448
           N+  G++PA L
Sbjct: 524 NSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVP-EFLSELHFLRVLN 434
                 +  L+LS +   G +  +  S + L++L LS+N+ +G +P + L ++  L+VL+
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+ N   G +P  L   + + LL+L +  N
Sbjct: 350 LSFNEFSGELPESLTNLSAS-LLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 9e-14
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            L ++  L L  + + GEI   +  + +L+ L L  N LTG +P  LS    L  ++L+ 
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 438 NNLEGSVPAGL 448
           N L G +P  +
Sbjct: 500 NRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 6e-13
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 379 LPRIISLNLSSSGISGEI-ITYIFSLTSLQALDLSNNSLTGSVPE---FLSELHFLRVLN 434
              +  LN+SS+ +     ++    L SL+ LDLS NS++G+             L+ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           ++GN + G V           L  L V  N
Sbjct: 185 ISGNKISGDVDVSRCVN----LEFLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 7e-13
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 379 LPRIISLNLSSSGISGEI--ITYIFSLTSLQALDLSNNSLTGSVP-EFLSELHFLRVLNL 435
              + SL+LS + +SG +  +T + S + L+ L++S+N+L          +L+ L VL+L
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 436 TGNNLEGSVPAGLLERAK-NGLLSLSVDGN 464
           + N++ G+   G +       L  L++ GN
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 8e-13
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  ++LS++ ++GEI  +I  L +L  L LSNNS +G++P  L +   L  L+L  N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
              G++PA +         S  +  N
Sbjct: 549 LFNGTIPAAM------FKQSGKIAAN 568

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIF--SLTSLQALDLSNNSLTGSVPEFLSELHFLRVL 433
            N    +++L+LSS+  SG I+  +      +LQ L L NN  TG +P  LS    L  L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 434 NLTGNNLEGSVPAGL 448
           +L+ N L G++P+ L
Sbjct: 424 HLSFNYLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 9e-12
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLS-ELHFLRVLNLTG 437
              +  LN+SS+   G I      L SLQ L L+ N  TG +P+FLS     L  L+L+G
Sbjct: 246 CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 438 NNLEGSVPAGL 448
           N+  G+VP   
Sbjct: 304 NHFYGAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 9e-11
 Identities = 8/68 (11%), Positives = 23/68 (33%)

Query: 381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL 440
           +      +     G     +  L++    ++++    G           +  L+++ N L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 441 EGSVPAGL 448
            G +P  +
Sbjct: 645 SGYIPKEI 652

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 5e-09
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  L LS++  SG I   +    SL  LDL+ N   G++P  + +        +  N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAAN 568

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            + G     +           + +  
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 384 SLNLSSSGISGEIITYIFSLTSLQALDLSNN--SLTGSVPEFLSELHFLRVLNLTGNNLE 441
           S  ++++ I+G+   YI +    +    + N     G   E L+ L      N+T     
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 442 GSVPAGL 448
           G      
Sbjct: 622 GHTSPTF 628

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 455 GLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLL-----TALAILWNLKRRK 509
               LSV  +    H     +  +N Y +       S+ +L+     T   +        
Sbjct: 44  QEYVLSVLWDGLPRHFII--QSLDNLYRLE-GEGFPSIPLLIDHLLSTQQPLTKKSGVVL 100

Query: 510 QGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML-SA 568
                K  W L +                + IG+G FG V+ G L  + T VAVK     
Sbjct: 101 HRAVPKDKWVLNHEDLV----------LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET 150

Query: 569 SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTL 625
                  +F  E + +    H N+  L+G C +   + ++ E +  G+    L +    L
Sbjct: 151 LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARL 210

Query: 626 TWEARLRIATEAAQG 640
             +  L++  +AA G
Sbjct: 211 RVKTLLQMVGDAAAG 225

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 515 KGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY 574
           +  W L  ++              + IGKG FG V  G     G +VAVK +   +    
Sbjct: 13  RSGWALNMKELK----------LLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATA-- 58

Query: 575 KQFQAEVQY--IVHHKNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEA 629
           + F AE      + H NL  L+G   +E   + ++ E+MAKG+L ++L   G + L  + 
Sbjct: 59  QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC 118

Query: 630 RLRIATEAAQG 640
            L+ + +  + 
Sbjct: 119 LLKFSLDVCEA 129

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 510 QGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS 569
                   WE++    +           +  +G G +G VY G  +     VAVK L   
Sbjct: 207 GVSPNYDKWEMERTDIT----------MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED 256

Query: 570 SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTL 625
           +++  ++F  E   +  + H NL  L+G C  +    +I EFM  GNL ++L       +
Sbjct: 257 TMEV-EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 315

Query: 626 TWEARLRIATEAAQG 640
           +    L +AT+ +  
Sbjct: 316 SAVVLLYMATQISSA 330

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNG---TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
           +F +VIG+G FG VYHG L  N       AVK L   + +    QF  E   +    H N
Sbjct: 28  HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 87

Query: 590 LTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           + +L+G C   + +  ++  +M  G+L   + +  +  T +  +    + A+G
Sbjct: 88  VLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG 140

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 516 GSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK 575
           G W +   + +          F + IG G FG V+ GY   N  +VA+K +   ++   +
Sbjct: 1   GKWVIDPSELT----------FVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSE-E 48

Query: 576 QFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLR 632
            F  E + +  + H  L  L G C E   + L+ EFM  G L ++L +       E  L 
Sbjct: 49  DFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLG 108

Query: 633 IATEAAQG 640
           +  +  +G
Sbjct: 109 MCLDVCEG 116

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 24/127 (18%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG--TQVAVKML--SASSVQGYKQFQAEVQ---YIVHHKN 589
           F+ VIG+G FG V    ++ +G     A+K +   AS    ++ F  E++    + HH N
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDD-HRDFAGELEVLCKLGHHPN 87

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLRI 633
           +  L+G C+    + L  E+   GNL + L                S A+TL+ +  L  
Sbjct: 88  IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF 147

Query: 634 ATEAAQG 640
           A + A+G
Sbjct: 148 AADVARG 154

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)

Query: 515 KGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY 574
           +  W L  ++              + IGKG FG V  G  ++ G +VAVK +   +    
Sbjct: 185 RSGWALNMKELK----------LLQTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATA-- 230

Query: 575 KQFQAEVQY--IVHHKNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEA 629
           + F AE      + H NL  L+G   +E   + ++ E+MAKG+L ++L   G + L  + 
Sbjct: 231 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC 290

Query: 630 RLRIATEAAQG 640
            L+ + +  + 
Sbjct: 291 LLKFSLDVCEA 301

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASS 570
            +++N              F + +G+G F  ++ G         + + T+V +K+L  + 
Sbjct: 3   HKIRNEDLI----------FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH 52

Query: 571 VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTW 627
               + F      +  + HK+L    G C       L+ EF+  G+L+ +L    N +  
Sbjct: 53  RNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINI 112

Query: 628 EARLRIATEAAQG 640
             +L +A + A  
Sbjct: 113 LWKLEVAKQLAAA 125

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNG--TQVAVKML--SASSVQGYKQFQAEVQYI--VHHKNLT 591
           +K +G G FGTV  GY +       VAVK+L   A+      +  AE   +  + +  + 
Sbjct: 22  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
            ++G C+ ++ M L+ E    G L ++L     +  +  + +  + + G
Sbjct: 82  RMIGICEAESWM-LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMG 129

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 18/122 (14%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG---TQVAVKML--SASSVQGYKQFQAEVQYI--VHHKN 589
             K++G+G FG+V  G L+       +VAVK +    SS +  ++F +E   +    H N
Sbjct: 38  LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97

Query: 590 LTTLVGYCDEDTNMG-----LIYEFMAKGNLEEHL------SGANTLTWEARLRIATEAA 638
           +  L+G C E ++ G     +I  FM  G+L  +L      +G   +  +  L+   + A
Sbjct: 98  VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA 157

Query: 639 QG 640
            G
Sbjct: 158 LG 159

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNG---TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
           +F +VIG+G FG VYHG L  N       AVK L   + +    QF  E   +    H N
Sbjct: 92  HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 151

Query: 590 LTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           + +L+G C   + +  ++  +M  G+L   + +  +  T +  +    + A+G
Sbjct: 152 VLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG 204

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG---TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKNL 590
            ++VIGKG FG VYHG          Q A+K L   + +Q  + F  E   +  ++H N+
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84

Query: 591 TTLVGYC-DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
             L+G     +    ++  +M  G+L + + S     T +  +    + A+G
Sbjct: 85  LALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARG 136

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 512 GRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SAS 569
           G   GSWE+  +  +          F K +G G FG V +G        VA+KM+   + 
Sbjct: 13  GLGYGSWEIDPKDLT----------FLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM 61

Query: 570 SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLT 626
           S     +F  E + +  + H+ L  L G C +   + +I E+MA G L  +L    +   
Sbjct: 62  SED---EFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ 118

Query: 627 WEARLRIATEAAQG 640
            +  L +  +  + 
Sbjct: 119 TQQLLEMCKDVCEA 132

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 511 GGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SA 568
           G      WE++    +           +  +G G +G VY G  +     VAVK L    
Sbjct: 1   GSPNYDKWEMERTDIT----------MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT 50

Query: 569 SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANT 624
             V+   +F  E   +  + H NL  L+G C  +    +I EFM  GNL ++L       
Sbjct: 51  MEVE---EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQE 107

Query: 625 LTWEARLRIATEAAQG 640
           ++    L +AT+ +  
Sbjct: 108 VSAVVLLYMATQISSA 123

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG---TQVAVKML--SASSVQGYKQFQAEVQYI--VHHKN 589
             +++GKG FG+V    L+       +VAVKML     +    ++F  E   +    H +
Sbjct: 27  LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPH 86

Query: 590 LTTLVGYCDEDTNMG------LIYEFMAKGNLEEHL------SGANTLTWEARLRIATEA 637
           +  LVG        G      +I  FM  G+L   L           L  +  +R   + 
Sbjct: 87  VAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDI 146

Query: 638 AQG 640
           A G
Sbjct: 147 ACG 149

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQG 573
            + + R             F + +GKG FG+V         +  G  VAVK L  S+ + 
Sbjct: 5   TQFEERHLK----------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH 54

Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTN--MGLIYEFMAKGNLEEHL-SGANTLTWE 628
            + F+ E++ +  + H N+    G C       + LI E++  G+L ++L      +   
Sbjct: 55  LRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI 114

Query: 629 ARLRIATEAAQG 640
             L+  ++  +G
Sbjct: 115 KLLQYTSQICKG 126

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNL 590
           F + +GKG FG+V         +  G  VAVK L  S+ +  + F+ E++ +  + H N+
Sbjct: 45  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 104

Query: 591 TTLVGYCDEDTN--MGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
               G C       + LI E++  G+L ++L      +     L+  ++  +G
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKG 157

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 19/130 (14%)

Query: 516 GSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQG 573
           G  ELK  + +            K +G G FG V  G  +     VAVKM+   + S   
Sbjct: 1   GHMELKREEIT----------LLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSED- 48

Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEAR 630
             +F  E Q +  + H  L    G C ++  + ++ E+++ G L  +L S    L     
Sbjct: 49  --EFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQL 106

Query: 631 LRIATEAAQG 640
           L +  +  +G
Sbjct: 107 LEMCYDVCEG 116

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 511 GGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG----TQVAVKML 566
           G  K  +   K  +              KV+G G FGTV+ G     G      V +K++
Sbjct: 1   GAMKVLARIFKETELR----------KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVI 50

Query: 567 -SASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGA 622
              S  Q ++     +  I  + H ++  L+G C   +   L+ +++  G+L +H+    
Sbjct: 51  EDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHR 109

Query: 623 NTLTWEARLRIATEAAQG 640
             L  +  L    + A+G
Sbjct: 110 GALGPQLLLNWGVQIAKG 127

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%)

Query: 537 FEKVIGKGGFGTVYHGYLEF-------NGTQVAVKML-SASSVQGYKQFQAEVQ---YIV 585
             K +G+G FG V                  VAVKML   ++ +      +E++    I 
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 98

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEA 629
            HKN+  L+G C +D  + +I E+ +KGNL E+L                     +T++ 
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 630 RLRIATEAAQG 640
            +    + A+G
Sbjct: 159 LVSCTYQLARG 169

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG----TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
             KV+G G FGTVY G     G      VA+K L  A+S +  K+   E   +  V + +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH 78

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +  L+G C   T   LI + M  G L +++    + +  +  L    + A+G
Sbjct: 79  VCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L ++  L+   S +       +F SL +L  LD+S+     +     + L  L VL + G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+ + +    +    +N L  L +   
Sbjct: 455 NSFQENFLPDIFTELRN-LTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 7e-13
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  L+LS   +     T   SL+SLQ L++S+N+           L+ L+VL+ + N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           ++  S     L+   + L  L++  N   C   +C 
Sbjct: 529 HIMTSKK-QELQHFPSSLAFLNLTQNDFAC---TCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L ++ +      +  IF+ L +L  LDLS   L    P   + L  L+VLN++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NN    +     +   + L  L    N
Sbjct: 504 NNFFS-LDTFPYKCLNS-LQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNN 439
               +L+LS + +        FS   LQ LDLS   +          L  L  L LTGN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 440 LEGSVPAGLLERAKNGLLSLSVDGN 464
           ++  +  G      + L  L     
Sbjct: 88  IQS-LALGAFSGLSS-LQKLVAVET 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
            P +  L+LS   I         SL+ L  L L+ N +        S L  L+ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           NL        +   K  L  L+V  N
Sbjct: 111 NLASLEN-FPIGHLKT-LKELNVAHN 134

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + +L L+ + I    +     L+SLQ L     +L       +  L  L+ LN+  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            ++            N L  L +  N
Sbjct: 135 LIQSFKLPEYFSNLTN-LEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 370 LNCSYDGNELPRIISLNLSSSGIS--GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSEL 427
              ++   +LP +  L+LS +G+S  G      F  TSL+ LDLS N +      FL  L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-L 395

Query: 428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             L  L+   +NL+      +    +N L+ L +   
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSEL-HFLRVLNLTG 437
           L  +  LN+S +            L SLQ LD S N +  S  + L      L  LNLT 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHT 470
           N+   +       +       L V+     C T
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRV----L 433
           L  +  LN++ + I    +   FS LT+L+ LDLS+N +       L  LH + +    L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +L+ N +   +  G  +  +  L  L++  N
Sbjct: 183 DLSLNPMNF-IQPGAFKEIR--LHKLTLRNN 210

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 383 ISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLE 441
           +SL+LS + ++  I    F    L  L L NN  + +V +  +  L  L V  L      
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 442 GSVPAGLLERAK-NGLLSLSVDGN 464
                   +++   GL +L+++  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 377 NELPRIISLNLSS---SGISGEIITYIFSLTSLQALDLSNNSLT--GSVPEFLSELHFLR 431
            + P +   +L     +   G        L SL+ LDLS N L+  G   +       L+
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 432 VLNLTGNNLEG 442
            L+L+ N +  
Sbjct: 377 YLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           N L  + S +L S  I    +         Q L+L N          L  L  L   +  
Sbjct: 279 NCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 437 GNNLEGSVPAGLLERAKNGLLSLS 460
           G N    V    LE      L LS
Sbjct: 337 GGNAFSEVDLPSLE-----FLDLS 355

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 382 IISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL 440
           I    L+      + I  +F+ LT++ +  L + ++        S     + L L     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 441 EGSVPAGLLERAKNGLLSLS 460
                  L    +    S  
Sbjct: 317 GQFPTLKLKSLKRLTFTSNK 336

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 514 KKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG 573
            K +WE+                 E  +G+G FG V+ G      T+VA+K L   ++  
Sbjct: 175 AKDAWEIPRESLR----------LEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSP 223

Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEA 629
            + F  E Q +  + H+ L  L     E+    ++ E+M+KG+L + L       L    
Sbjct: 224 -EAFLQEAQVMKKLRHEKLVQLYAVVSEEPIY-IVTEYMSKGSLLDFLKGETGKYLRLPQ 281

Query: 630 RLRIATEAAQG 640
            + +A + A G
Sbjct: 282 LVDMAAQIASG 292

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSA-SSVQGYKQFQAEVQYI--VHHK 588
             + +G G FG VY G +     + +  QVAVK L    S Q    F  E   I   +H+
Sbjct: 34  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQ 93

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-------SGANTLTWEARLRIATEAAQG 640
           N+   +G   +     ++ E MA G+L+  L       S  ++L     L +A + A G
Sbjct: 94  NIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 152

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 515 KGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL---EFNGTQVAVKML-SASS 570
              + +                  +++G+G FG VY G     +     VAVK      +
Sbjct: 4   GPQYGIAREDVV----------LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT 53

Query: 571 VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTW 627
           +   ++F +E   +  + H ++  L+G  +E+    +I E    G L  +L    N+L  
Sbjct: 54  LDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTW-IIMELYPYGELGHYLERNKNSLKV 112

Query: 628 EARLRIATEAAQG 640
              +  + +  + 
Sbjct: 113 LTLVLYSLQICKA 125

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 510 QGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL---EFNGTQVAVKML 566
           +G  +  +  +  +               + +G G FG V  G           VAVK L
Sbjct: 5   EGPLQSLTCLIGEKDLR----------LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCL 54

Query: 567 ---SASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-S 620
                S  +    F  EV  +  + H+NL  L G         ++ E    G+L + L  
Sbjct: 55  KPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRK 113

Query: 621 GANTLTWEARLRIATEAAQG 640
                      R A + A+G
Sbjct: 114 HQGHFLLGTLSRYAVQVAEG 133

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNL 590
           +   +GKG FG+V         +  G  VAVK L  S     + FQ E+Q +  +H   +
Sbjct: 27  YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI 86

Query: 591 TTLVGYCDEDTN--MGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
               G         + L+ E++  G L + L      L     L  +++  +G
Sbjct: 87  VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKG 139

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 512 GRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSA 568
           G     +E++  +              + IG+G FG V+ G           VA+K    
Sbjct: 4   GSSTRDYEIQRERIE----------LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKN 53

Query: 569 SSVQGYKQ-FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANT 624
            +    ++ F  E   +    H ++  L+G   E+    +I E    G L   L     +
Sbjct: 54  CTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVW-IIMELCTLGELRSFLQVRKYS 112

Query: 625 LTWEARLRIATEAAQG 640
           L   + +  A + +  
Sbjct: 113 LDLASLILYAYQLSTA 128

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
             + +G+G FG V         +  G QVAVK L   S        + E++ +  ++H+N
Sbjct: 25  RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN 84

Query: 590 LTTLVGYCDEDTN--MGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +    G C ED    + LI EF+  G+L+E+L    N +  + +L+ A +  +G
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKG 138

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG---TQVAVKML-SASSVQG 573
            E+        + ++I    EK+IG G  G V +G L   G     VA+K L +  + + 
Sbjct: 44  REI--------EASRIH--IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ 93

Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEAR 630
            + F +E   +    H N+  L G         ++ E+M  G+L+  L +     T    
Sbjct: 94  RRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQL 153

Query: 631 LRIATEAAQG 640
           + +      G
Sbjct: 154 VGMLRGVGAG 163

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 514 KKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG 573
            K +WE+                 E  +G+G FG V+ G      T+VA+K L   ++  
Sbjct: 258 AKDAWEIPRESLR----------LEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMS- 305

Query: 574 YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEA 629
            + F  E Q +  + H+ L  L     E+    ++ E+M+KG+L + L       L    
Sbjct: 306 PEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIY-IVTEYMSKGSLLDFLKGETGKYLRLPQ 364

Query: 630 RLRIATEAAQG 640
            + +A + A G
Sbjct: 365 LVDMAAQIASG 375

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%)

Query: 537 FEKVIGKGGFGTVYHGYLEF-------NGTQVAVKML-SASSVQGYKQFQAEVQ---YIV 585
             K +G+G FG V                  VAVKML   ++ +      +E++    I 
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEA 629
            HKN+  L+G C +D  + +I E+ +KGNL E+L                     +T++ 
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204

Query: 630 RLRIATEAAQG 640
            +    + A+G
Sbjct: 205 LVSCTYQLARG 215

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 22/126 (17%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKN 589
            +  +G+G FG V+         E +   VAVK L  +S    + FQ E + +  + H++
Sbjct: 45  LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH 104

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL---------------SGANTLTWEARLRIA 634
           +    G C E   + +++E+M  G+L   L                    L     L +A
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164

Query: 635 TEAAQG 640
           ++ A G
Sbjct: 165 SQVAAG 170

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEVQYI--VHHK 588
             + +G+G FG VY G       +   T+VA+K +  A+S++   +F  E   +   +  
Sbjct: 29  MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH 88

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------SGANTLTWEARLRIATEAA 638
           ++  L+G   +     +I E M +G+L+ +L                +    +++A E A
Sbjct: 89  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIA 148

Query: 639 QG 640
            G
Sbjct: 149 DG 150

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKN 589
            ++ +G+G FG V+           +   VAVK L   ++   K FQ E + +  + H++
Sbjct: 19  LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH 78

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLRI 633
           +    G C +   + +++E+M  G+L + L                     L     L I
Sbjct: 79  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 138

Query: 634 ATEAAQG 640
           A++ A G
Sbjct: 139 ASQIASG 145

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  LNL S+G     +     L  L+ +DL  N+L        +    L+ LNL  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            +   V   +   A   L  L +  NP
Sbjct: 595 LITS-VEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 7e-11
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 370 LNCSYDG-NELPRII-----SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEF 423
            +CS+    ++P  +      LNL+ + +           + L +LD+  N+++   PE 
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             +L  L+VLNL  N L   +         N L  L +  N
Sbjct: 69  CQKLPMLKVLNLQHNELSQ-LSDKTFAFCTN-LTELHLMSN 107

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 8e-11
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 379 LPRIISLNLSSSGISGEIIT----YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           L  +  L+LS+S  S   +T       + + L  L+L+ N ++    +  S L  L VL+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L  N +   +        +N +  + +  N
Sbjct: 412 LGLNEIGQELTGQEWRGLEN-IFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            L  +  L+L  + I  E+    +  L ++  + LS N          + +  L+ L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 437 GNNLEG-SVPAGLLERAKNGLLSLSVDGN 464
              L+         +  +N L  L +  N
Sbjct: 463 RVALKNVDSSPSPFQPLRN-LTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 379 LPRIISLNLSS---SGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           L  +  L LS+     +  E +  IF+ +SL+ L+LS+N +    P     +  L  L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 436 TGNNLEGSVPAGLLERAKN-GLLSLSVDGN 464
               L  S+   L     N  + +LS+  +
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 21/89 (23%), Positives = 35/89 (39%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
                +  L+L S+ I            +L  LDLS+N L+ +      +L  L+ L L+
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            N ++      L   A + L  L +  N 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           LP +  LNL  + +S          T+L  L L +NS+         +   L  L+L+ N
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            L  S   G   + +N L  L +  N
Sbjct: 132 GLS-STKLGTQVQLEN-LQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 6e-10
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++ SL++  + IS         L  L+ L+L +N L+    +  +    L  L+L  N
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           +++  +      + KN L++L +  N
Sbjct: 108 SIQ-KIKNNPFVKQKN-LITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 378 ELPRIISLNLSSSGISG--EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
            +P +  L L    +       +    L +L  LDLSNN++     + L  L  L +L+L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 436 TGNNLE 441
             NNL 
Sbjct: 512 QHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 7e-09
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTG 437
           L  +  ++L  + ++    +   +  SL++L+L  N +T    + F      L  L++  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 438 NNLEGS 443
           N  + +
Sbjct: 619 NPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%)

Query: 373 SYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRV 432
           ++ G +   +  L+LS + ++         L  L+   L  N++       L  L  +R 
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 433 LNLTGNNLEGSVPAGLLERAKNGLLS 458
           LNL  +  + S+    L +  +    
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQ 326

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 379 LPRIISLNLSSSGIS--------GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFL 430
           L ++  L+L  + ++        G  I ++  L+ L  L+L +N       E   +L  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 431 RVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           ++++L  NNL   +PA +     + L SL++  N
Sbjct: 563 KIIDLGLNNLNT-LPASVFNNQVS-LKSLNLQKN 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIF---SLTSLQALDLSNNSLTGSVPEFLSELHF--LRVL 433
           + R+  L L++  +   +   +    + TS++ L LSN+ L+ +       L +  L +L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +L+ NNL   V           L    ++ N
Sbjct: 254 DLSYNNLNV-VGNDSFAWLPQ-LEYFFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 382 IISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
               ++S + +          L  L+ L++ +N + G      + L  L+ L+L+ +   
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 442 GSVPAG--LLERAKNGLLSLSVDGN 464
                    +  A + L  L++  N
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKN 391

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 26/130 (20%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEVQ---YIVHH 587
             K +G+G FG V                VAVKML   ++   ++   +E++   +I HH
Sbjct: 31  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 90

Query: 588 KNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEAR 630
            N+  L+G C      + +I EF   GNL  +L                   + LT E  
Sbjct: 91  LNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHL 150

Query: 631 LRIATEAAQG 640
           +  + + A+G
Sbjct: 151 ICYSFQVAKG 160

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNG--TQVAVKMLSASSVQGYKQ-FQAEVQYI--VHHKNLTT 592
           +  +G G FG+V  G          VA+K+L   + +   +    E Q +  + +  +  
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           L+G C  +  M L+ E    G L + L      +       +  + + G
Sbjct: 75  LIGVCQAEALM-LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 122

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
             + +G+G FG V         +  G  VAVK L + +  Q    ++ E+  +  ++H++
Sbjct: 35  KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH 94

Query: 590 LTTLVGYCDEDTN--MGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
           +    G C++     + L+ E++  G+L ++L   +++     L  A +  +G
Sbjct: 95  IIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP-RHSIGLAQLLLFAQQICEG 146

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 7e-13
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 354 NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSN 413
           NW  +          G++     N   R+  L+L   G SG +   I  LT L+ L L +
Sbjct: 59  NWNFNKELDMWGAQPGVSL----NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114

Query: 414 NSLTG----SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
           +          P+ +S             + + +          + L+   ++ +P+   
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGI-SGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             +I  + +  + + +  + T +  +  L  L+   N L G +P F      L  LNL  
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAY 362

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N +   +PA      +  + +LS   N
Sbjct: 363 NQITE-IPANFCGFTEQ-VENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 379 LPRIISLNLSS---SGISGEIITYIFSLTSLQALDLSN------NSLTGSVPEFLSELHF 429
           LP ++ ++LS    S    +      + ++L+   + N      N      PE ++    
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQP----LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           L  L +  N++   V   +       +  L +  NP
Sbjct: 568 LTQLQIGSNDIR-KVNEKITPN----ISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           + ++  L    + + G  +    S   L +L+L+ N +T     F      +  L+   N
Sbjct: 329 MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            L+  +P     ++ + + ++    N 
Sbjct: 388 KLK-YIPNIFDAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 379 LPRIISLNLSS---SGIS----GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLR 431
           +  + +++ S      +       +    F   ++ +++LSNN ++    E  S    L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 432 VLNLTGNNLEGSVPAGLLERAKNGLLSLS 460
            +NL GN L   +P   L+       +  
Sbjct: 461 SINLMGNMLTE-IPKNSLKDENENFKNTY 488

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV 444
            +   +    E    I    SL  L + +N +     +       + VL++  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISID 603

Query: 445 PAGLLERAKNGLLSLSVDGNPKLC 468
            + +    + G+  L  D    + 
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +   +I   ++S      I            +   +N++T  V + +  L  LR   + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMG 214

Query: 437 GNNLEGSVPAGLLERAKNGLLSLS 460
            +           E   +      
Sbjct: 215 NSPFVAENICEAWENENSEYAQQY 238

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 384 SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG 442
           + N   +           +L  L  +++ N      +P FL  L  ++++N+  N    
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 379 LPRIISLNLSSSGISG-------EIITYIFSLTSLQALDLSNNSLTGSVPEF-LSELHFL 430
              + S+NL  + ++        +      +   L ++DL  N LT    +F  + L +L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 431 RVLNLTGNNLEGSVPAGL 448
             ++L+ N+     P   
Sbjct: 516 VGIDLSYNSFSK-FPTQP 532

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT--------GSVPEFLSELH 428
           + L  +  + + +     ++ T++ +L  +Q ++++ N                      
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 429 FLRVLNLTGNNL-EGSVPAGL 448
            ++++ +  NNL    V   L
Sbjct: 306 KIQIIYIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 379 LPRIISLNLSS---SGISGEIITYIFSLTSLQALDLSNNSLTG-------SVPEFLSELH 428
             ++ +L+ +      I    I    S++ + A+D S N +          +     +  
Sbjct: 376 TEQVENLSFAHNKLKYIP--NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 429 FLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            +  +NL+ N +    P  L       L S+++ GN
Sbjct: 434 NVSSINLSNNQISK-FPKELFSTGSP-LSSINLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 20/89 (22%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF--------- 429
             +   +   S+ I+  +   +  LT L+   + N+           E            
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 430 ----------LRVLNLTGNNLEGSVPAGL 448
                     L  + +        +P  L
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 6/67 (8%), Positives = 17/67 (25%), Gaps = 3/67 (4%)

Query: 384 SLNLSSSGISGEIITYIF--SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
                        + Y      + L    ++++    S+ +          +    NN+ 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 442 GSVPAGL 448
             V   +
Sbjct: 197 -FVSKAV 202

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 68.4 bits (168), Expect = 7e-13
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF 577
           WE+                  + +G G FG V+ GY     T+VAVK L   S+     F
Sbjct: 8   WEVPRETLK----------LVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSP-DAF 55

Query: 578 QAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRI 633
            AE   +  + H+ L  L     ++    +I E+M  G+L + L       LT    L +
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPIY-IITEYMENGSLVDFLKTPSGIKLTINKLLDM 114

Query: 634 ATEAAQG 640
           A + A+G
Sbjct: 115 AAQIAEG 121

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG-----TQVAVKML-SASSVQGYKQFQAEVQYI--VHHK 588
             + +G G FG VY G +          QVAVK L    S Q    F  E   I   +H+
Sbjct: 75  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQ 134

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-------SGANTLTWEARLRIATEAAQG 640
           N+   +G   +     ++ E MA G+L+  L       S  ++L     L +A + A G
Sbjct: 135 NIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 193

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEVQ---YIVHH 587
           F K +G G FG V          E    +VAVKML S +     +   +E++   ++  H
Sbjct: 50  FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQH 109

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--------------SGANTLTWEARLRI 633
           +N+  L+G C     + +I E+   G+L   L                 +T +    L  
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHF 169

Query: 634 ATEAAQG 640
           +++ AQG
Sbjct: 170 SSQVAQG 176

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 27/131 (20%)

Query: 537 FEKVIGKGGFGTVYHGYL-------EFNGTQVAVKML-SASSVQGYKQFQAEVQ---YIV 585
             K +G+G FG V                T+VAVKML S ++ +      +E++    I 
Sbjct: 73  LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 132

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEA 629
            HKN+  L+G C +D  + +I E+ +KGNL E+L                +    L+ + 
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 630 RLRIATEAAQG 640
            +  A + A+G
Sbjct: 193 LVSCAYQVARG 203

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG----TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKN 589
             KV+G G FGTVY G     G      VA+K L  A+S +  K+   E   +  V + +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH 78

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
           +  L+G C   T   LI + M  G L +++    + +  +  L    + A+G
Sbjct: 79  VCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 506 KRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKM 565
             + Q   +K +WE+                 EK +G G FG V+        T+VAVK 
Sbjct: 171 SSKPQKPWEKDAWEIPRESLK----------LEKKLGAGQFGEVWMATYN-KHTKVAVKT 219

Query: 566 LSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SG 621
           +   S+   + F AE   +  + H  L  L     ++    +I EFMAKG+L + L    
Sbjct: 220 MKPGSMSV-EAFLAEANVMKTLQHDKLVKLHAVVTKEPIY-IITEFMAKGSLLDFLKSDE 277

Query: 622 ANTLTWEARLRIATEAAQG 640
            +       +  + + A+G
Sbjct: 278 GSKQPLPKLIDFSAQIAEG 296

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEVQ---YIVHH 587
           F K +G G FG V                VAVKML  ++ +   +   +E++   Y+ +H
Sbjct: 27  FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH 86

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            N+  L+G C       +I E+   G+L   L
Sbjct: 87  MNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 118

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEVQ---YIVHH 587
           F KV+G G FG V +             QVAVKML   +     +   +E++    +  H
Sbjct: 49  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH 108

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           +N+  L+G C     + LI+E+   G+L  +L
Sbjct: 109 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYL 140

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG----TQVAVKML-SASSVQ 572
            E+     +           +KVIG G FG VY G L+ +       VA+K L +  + +
Sbjct: 39  TEIHPSCVT----------RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK 88

Query: 573 GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEA 629
               F  E   +    H N+  L G   +   M +I E+M  G L++ L       +   
Sbjct: 89  QRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQ 148

Query: 630 RLRIATEAAQG 640
            + +    A G
Sbjct: 149 LVGMLRGIAAG 159

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSASSVQGY 574
            EL     S           +KV+G G FG V  G L+        VA+K L     +  
Sbjct: 40  KELDATNIS----------IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ 89

Query: 575 KQ-FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEAR 630
           ++ F  E   +    H N+  L G   +   + ++ E+M  G+L+  L       T    
Sbjct: 90  RRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQL 149

Query: 631 LRIATEAAQG 640
           + +    A G
Sbjct: 150 VGMLRGIASG 159

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNG--TQVAVKMLSASSVQGYK 575
            ELK++K        +    +  +G G FG+V  G          VA+K+L   + +   
Sbjct: 323 EELKDKKLFLKRDNLLI--ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADT 380

Query: 576 Q-FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARL 631
           +    E Q +  + +  +  L+G C  +  M L+ E    G L + L      +      
Sbjct: 381 EEMMREAQIMHQLDNPYIVRLIGVCQAEALM-LVMEMAGGGPLHKFLVGKREEIPVSNVA 439

Query: 632 RIATEAAQG 640
            +  + + G
Sbjct: 440 ELLHQVSMG 448

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG-----TQVAVKMLSA-SSVQGYKQFQAEVQYI--VHHK 588
           + + IG+G FG V+             T VAVKML   +S      FQ E   +    + 
Sbjct: 51  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNP 110

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           N+  L+G C     M L++E+MA G+L E L
Sbjct: 111 NIVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 141

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEF-----NGTQVAVKML-SASSVQGYKQFQAEVQYI--VHHK 588
             K +G+G FG V              T VAVKML   +S    +   +E   +  V+H 
Sbjct: 27  LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHP 86

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           ++  L G C +D  + LI E+   G+L   L
Sbjct: 87  HVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG---TQVAVKML-SASSVQGYKQFQAEVQYI--VHHKNL 590
             + IG+G FG V+ G           VA+K   + +S    ++F  E   +    H ++
Sbjct: 394 LGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 453

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQG 640
             L+G   E+    +I E    G L   L     +L   + +  A + +  
Sbjct: 454 VKLIGVITENPVW-IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L+LS   +         +L  LQ L++S+N+L        ++L+ L  L+ + N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            +E +    L    K+ L   ++  N 
Sbjct: 532 RIE-TSKGILQHFPKS-LAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L+   S +        F SL  L  LD+S  +           L  L  L + G
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+ + +  + +     N L  L +   
Sbjct: 458 NSFKDNTLSNVFANTTN-LTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L ++ +      ++ +F+  T+L  LDLS   L          LH L++LN++ 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NNL   + +    +  + L +L    N
Sbjct: 507 NNLL-FLDSSHYNQLYS-LSTLDCSFN 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              +  L+LS   I   I    +  L  L  L L+ N +    P   S L  L  L    
Sbjct: 55  FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
             L  S+ +  + +    L  L+V  N
Sbjct: 114 TKLA-SLESFPIGQLIT-LKKLNVAHN 138

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 370 LNCSYDG-NELPR-----IISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEF 423
             C     +++P        +++LS + +         + + LQ LDLS   +     + 
Sbjct: 16  YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
              LH L  L LTGN ++ S   G      + L +L     
Sbjct: 76  WHGLHHLSNLILTGNPIQ-SFSPGSFSGLTS-LENLVAVET 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 370 LNCSYDGNELPRIISLNLSSSGIS--GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSEL 427
            + S+    LP +  L+LS + +S  G          SL+ LDLS N     +      L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             L+ L+   + L+           +  LL L +   
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L L+ + I        FS LTSL+ L      L       + +L  L+ LN+  
Sbjct: 79  LHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N +             N L+ + +  N
Sbjct: 138 NFIHSCKLPAYFSNLTN-LVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 371 NCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVP-EFLSELHF 429
            CSY       +  L+LS +G    +      L  LQ LD  +++L           L  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L  L+++  N +     G+     + L +L + GN
Sbjct: 426 LLYLDISYTNTK-IDFDGIFLGLTS-LNTLKMAGN 458

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L R+  LN+S + +     ++   L SL  LD S N +  S          L   NLT N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 439 NL 440
           ++
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLR----VL 433
           L  +  LN++ + I    +   FS LT+L  +DLS N +       L  L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +++ N ++  +     +  K  L  L++ GN
Sbjct: 187 DMSLNPID-FIQDQAFQGIK--LHELTLRGN 214

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF--LRVLNLT 436
           LP + SL L+ +  S  I     +L SL  LDLS N+L+ S     S+L    LR L+L+
Sbjct: 327 LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 437 GNNLE 441
            N   
Sbjct: 385 FNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + +++L+   I    +  +      Q+L +    L       L    FL+ L LT N
Sbjct: 284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMN 338

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
               S     L      L  L +  N
Sbjct: 339 KGSISFKKVALPS----LSYLDLSRN 360

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 384 SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLEG 442
           SL++S + I   I    F    L  L L  N  + ++ +  L  L  L V  L     + 
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 65.3 bits (160), Expect = 9e-12
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNG-----TQVAVKMLSA-SSVQGYKQFQAEVQY--IVHHK 588
           F + +G+  FG VY G+L           VA+K L   +     ++F+ E      + H 
Sbjct: 13  FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHP 72

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLR 632
           N+  L+G   +D  + +I+ + + G+L E L                +  + L     + 
Sbjct: 73  NVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVH 132

Query: 633 IATEAAQG 640
           +  + A G
Sbjct: 133 LVAQIAAG 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L ++ +      +  IF+ L +L  LDLS   L    P   + L  L+VLN+  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           N L+ SVP G+ +R  + L  + +  NP  C   SC 
Sbjct: 504 NQLK-SVPDGIFDRLTS-LQKIWLHTNPWDC---SCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 378 ELPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            L ++  L+   S +       +F SL +L  LD+S+     +     + L  L VL + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           GN+ + +    +    +N L  L +   
Sbjct: 454 GNSFQENFLPDIFTELRN-LTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 370 LNCSYDGNELPRIISLNLSSSGISGEIIT--YIFSLTSLQALDLSNNSLTGSVPEFLSEL 427
              ++   +LP +  L+LS +G+S +       F  TSL+ LDLS N +  ++      L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             L  L+   +NL+      +    +N L+ L +    
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTH 432

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT-GSVPEFLSELHFLRVLNL 435
           + L  +  L    + ++      I  L +L+ L++++N +    +PE+ S L  L  L+L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 436 TGNNLEGSVPAGLLERAKN---GLLSLSVDGNP 465
           + N ++ S+    L          LSL +  NP
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 358 DPCAPKVYLWQGLNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFS-LTSLQALD 410
           +PC   V       C      ++P  +      L+LS + +   + +Y F     LQ LD
Sbjct: 1   EPCVEVVPNIT-YQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLD 58

Query: 411 LSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           LS   +          L  L  L LTGN ++ S+  G      + L  L     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS-LQKLVAVET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            P +  L+LS   I   I    +  L+ L  L L+ N +        S L  L+ L    
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
            NL  S+    +   K  L  L+V  N
Sbjct: 110 TNLA-SLENFPIGHLKT-LKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L L+ + I   +    FS L+SLQ L     +L       +  L  L+ LN+  
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 438 NNL 440
           N +
Sbjct: 134 NLI 136

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKML-SASSVQGYKQFQAEV---QYIVHH 587
             K +G+G FG V                VAVKML   ++   ++   +E+    +I HH
Sbjct: 26  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 85

Query: 588 KNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL 619
            N+  L+G C      + +I EF   GNL  +L
Sbjct: 86  LNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 118

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L+L+++ +S E+ + +  L++L+ L LS N          S    L  L++ GN
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
                +  G LE  +N L  L +  +
Sbjct: 336 TKRLELGTGCLENLEN-LRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            P++  L+L+ + +  +     F  L  L+ L+LS++ L  S  +    L  L+ LNL G
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 438 NNLEGS--VPAGLLERAKNGLLSLSVDGN 464
           N+           L+     L  L +   
Sbjct: 459 NHFPKGNIQKTNSLQTLGR-LEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 10/102 (9%)

Query: 370 LNCSYDG-NELPR-----IISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE 422
            NC   G NE+P         L  S + +   I    FS L +L  LDL+   +     +
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 423 FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
                H L  L LT N L   +    L   K  L  L     
Sbjct: 76  TFQSQHRLDTLVLTANPLI-FMAETALSGPKA-LKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L+L+   I   I    F S   L  L L+ N L       LS    L+ L    
Sbjct: 56  LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
             +  S+    L   K  L SL +  N
Sbjct: 115 TGIS-SIDFIPLHNQKT-LESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 379 LPRIISLNLSSSGISG--EIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           LP +  LNL  +         T     L  L+ L LS   L+       + L  +  ++L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLS 460
           + N L  S     L   K   L+L+
Sbjct: 508 SHNRLT-SSSIEALSHLKGIYLNLA 531

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             R+ +L L+++ +     T +    +L+ L      ++      L     L  L L  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           ++  S+        +  L  L    N
Sbjct: 140 HIS-SIKLPKGFPTEK-LKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 379 LPRIISLNLSSSGI--SGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           L  +  L+LS   I  S      + +L+ LQ+L+LS N       E   E   L +L+L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
              L+        +     L  L++  +
Sbjct: 409 FTRLKVKDAQSPFQNLHL-LKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGS--VPEFLSELHFLRVLN 434
             P +  L++  +    E+ T     L +L+ LDLS++ +  S      L  L  L+ LN
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+ N    S+     +     L  L +   
Sbjct: 383 LSYNEPL-SLKTEAFKECPQ-LELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L    +GIS      + +  +L++L L +N ++            L+VL+   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 439 NLEGSVPAGLLERAKN-GLLSLSVDGNP 465
            +   +    +   +    LSL+++GN 
Sbjct: 164 AIH-YLSKEDMSSLQQATNLSLNLNGND 190

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSV-PEFLSELHFLRVLNLT 436
           L  +  L LS++     +     S   SL  L +  N+    +    L  L  LR L+L+
Sbjct: 300 LSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 437 GNNLEGSVPAGLLERAKNGLLSL 459
            +++E S            L  L
Sbjct: 359 HDDIETS---DCCNLQLRNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  ++LS + ++        S      L+L++N ++  +P  L  L   R +NL  N
Sbjct: 499 LKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 439 NLEGS 443
            L+ +
Sbjct: 558 PLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 375 DGNELPRIISLNLSSSGISG--EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRV 432
             + +  +                +       S+++++L  +               L+ 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 433 LNLTGNNLEGSVPAGL 448
           L+LT  +L   +P+GL
Sbjct: 283 LDLTATHLS-ELPSGL 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF--LRVLNLTGN 438
             +SLNL+ + I+  I    F     Q+L+         + + L       L +      
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           + E   PA      +  + S+++  +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKH 264

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK---QFQAEV--QYIVHH 587
            +FE  + +GKG FG VY    + +   +A+K+L  + ++      Q + EV  Q  + H
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            N+  L GY  + T + LI E+   G +   L   +        
Sbjct: 69  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L+LS   +  ++    F+ L+SLQ L++S+N+           L+ L+VL+ + 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           N++  +     L+   + L  L++  N   C   +C 
Sbjct: 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDFAC---TCE 265

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L ++  L+   S +       +F  L +L  LD+S+     +     + L  L VL + G
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+ + +    +    +N L  L +   
Sbjct: 160 NSFQENFLPDIFTELRN-LTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT 436
           L  +I L++S +         IF+ L+SL+ L ++ NS   +      +EL  L  L+L+
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
              LE  +         + L  L++  N 
Sbjct: 184 QCQLE-QLSPTAFNSLSS-LQVLNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 378 ELPRIISLNLSSSGIS-GEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           +L ++  L+LSS+G+S     +      TSL+ LDLS N +  ++      L  L  L+ 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             +NL+      +    +N L+ L +   
Sbjct: 109 QHSNLKQMSEFSVFLSLRN-LIYLDISHT 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 7e-10
 Identities = 85/619 (13%), Positives = 167/619 (26%), Gaps = 184/619 (29%)

Query: 143 PFISALELRPLKNSTYETQSGSLLLWDVGSTTSEAI-RYPDDV----YDRIWSPYRSLRW 197
             +S  E+  +  S         L W + S   E + ++ ++V    Y  + SP ++   
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--- 100

Query: 198 ESITRRSDSTFFE-------NDWQL--PLTIMRTAVRPANASINSLSFYWKTSTPESQYY 248
           E       +  +        ND Q+     + R  ++P      +L        P     
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQAL----LELRPAK--N 152

Query: 249 IFLH----------FAEVEGRQENQTREMSIYSNGKLWYGPFVPYTF---FTTTLVSIYP 295
           + +             +V         +M        W             +   V    
Sbjct: 153 VLIDGVLGSGKTWVALDV-CLSYKVQCKMD---FKIFWL------NLKNCNSPETVLEML 202

Query: 296 SKGSERIDFSINKTENSTLPPILNAEEIYLA-------KEFPSSLTSQQDVDAIMSIKKK 348
            K   +ID +     + +    L    I          K + + L    +V         
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------- 253

Query: 349 YGVKKNWQGDPCAPKVYLWQGLN--CSYDGNELPRII--SLNLS-SSGISGEIITYIFSL 403
                         K   W   N  C        +I+  +     +  +S    T+I   
Sbjct: 254 ------QN-----AKA--WNAFNLSC--------KILLTTRFKQVTDFLSAATTTHIS-- 290

Query: 404 TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGL-LSLSVD 462
                LD  + +LT   P+ +  L  L+ L+    +L    P              LS+ 
Sbjct: 291 -----LDHHSMTLT---PDEVKSL-LLKYLDCRPQDL----P----REVLTTNPRRLSII 333

Query: 463 G---NPKLCHTASCNKRQNNKYIVPVAASVVSL-----------------SVLLTA--LA 500
                  L    +      +K    + +S+  L                 S  +    L+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 501 ILWNLKRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEK--VIGKGGFGTVY--HG-YLE 555
           ++W              +++       SDV  + N   K  ++ K    +       YLE
Sbjct: 394 LIW--------------FDVI-----KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 556 FNGTQVAVKMLSASSVQGY---KQFQAE-----------VQYIVHHKNLTTLVGYCDEDT 601
                     L  S V  Y   K F ++             +I HH              
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 602 NMGLIYEFM-AK-----GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHI-- 653
            + L + F+  K            S  NTL    +L+        +   +++     +  
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDF 551

Query: 654 ---CESSSSSNPHKNIVKL 669
               E +   + + +++++
Sbjct: 552 LPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 77/467 (16%), Positives = 139/467 (29%), Gaps = 134/467 (28%)

Query: 37  NISSEYSSNKTLER-QFLNVRSFPEGIRNC---YTLKPSSGDVKFLIRARFMYGNYDGQN 92
           N+ +  S    LE  Q L  +  P           +K     ++  +R       Y  +N
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--EN 245

Query: 93  IIPSFSLLLEADVWDSVNLKDASGI-----VT---KEIIHA-PKKNYMYVCLVNTGSG-T 142
                 LL+  +V ++    +A  +     +T   K++          ++ L +     T
Sbjct: 246 -----CLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 143 P------FISALELRP--LKNSTYETQSGSLLLWDVGSTTSEAIRYPDDVYDRIWSPYRS 194
           P       +  L+ RP  L     E  + +       S  +E+IR   D     W  ++ 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRL---SIIAESIR---DGLAT-WDNWKH 349

Query: 195 LRWESITRRSDSTFFENDWQLPLTIMRT-----AVRPANASINS--LSFYWKTSTPESQY 247
           +  + +T   +S        L     R      +V P +A I +  LS  W         
Sbjct: 350 VNCDKLTTIIES-SLNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--- 402

Query: 248 YIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTTTLVSIYPSKGSERIDFSIN 307
                  +V         ++  YS                  LV   P + +  I     
Sbjct: 403 -------DV----MVVVNKLHKYS------------------LVEKQPKESTISIP---- 429

Query: 308 KTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIM--SIKKKYGVKKNWQGDPCAPKV- 364
                          IYL       L  + + +  +  SI   Y + K +  D   P   
Sbjct: 430 --------------SIYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 365 --YLWQGL-----NCSYDGN-ELPRIISLNLS-------SSGISGEIITYIFSLTSLQAL 409
             Y +  +     N  +     L R++ L+             +      I +   LQ L
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQL 527

Query: 410 DLSNNSLTGSVPEF---LSEL-HFLRVLNLTGNNLEGSVPAGLLERA 452
                 +  + P++   ++ +  FL  +     NL  S    LL  A
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYTDLLRIA 571

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK---QFQAEVQY--IVHHKNLTTL 593
           + +GKGGF   +           A K++  S +       +   E+     + H+++   
Sbjct: 47  RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGF 106

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            G+ +++  + ++ E   + +L E       LT  EAR
Sbjct: 107 HGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR 144

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVK--MLSASSVQGYKQFQAEVQYI--VHHKNLTT 592
           F+  IG+G F TVY G       +VA         +    ++F+ E + +  + H N+  
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR 89

Query: 593 LVGY----CDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
                         + L+ E M  G L+ +L     +  +       +  +G
Sbjct: 90  FYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKG 141

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK---QFQAEVQY--IVHHKNLTTL 593
           + +GKGGF   +           A K++  S +       +   E+     + H+++   
Sbjct: 21  RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGF 80

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            G+ +++  + ++ E   + +L E       LT  EAR
Sbjct: 81  HGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR 118

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV 444
            +   + I  +  T I +  SL  L + +N +   V E L     L +L++  N      
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISID 843

Query: 445 PAGLLERAKNGLLSLSVDGNPKLC 468
              +    + G+  L  D    + 
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDL------SNNSLTGSVPEFLSELHFL 430
             LP + ++++S +  S    T   + + L+A  +        N +    P  ++    L
Sbjct: 750 TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 431 RVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             L +  N++   V   L  +    L  L +  NP
Sbjct: 809 IQLQIGSNDIR-KVDEKLTPQ----LYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 366 LWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLT------- 417
             + ++CS D  +     ++ LS + I     T +F+  + +  + LSNN +T       
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 418 GSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
                     + L  ++L  N L  S+           L ++ V  N
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +   R+  L+L+  G  G +   I  LT L+ L    +S T S   F  E     +    
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 437 GNNLEGSVPAGLLERAKN----GLLSLSVDGNPKL 467
            + +        L+  +      LL  +++ NP++
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 379 LPRIISLNLSSSGISGEIITY-IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            P+I    +  + +     +  +  +  L  LD  +N +   +  F      L  L L  
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDY 604

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N +E  +P          +  L    N
Sbjct: 605 NQIE-EIPEDFCAFTDQ-VEGLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG---------SVPEFLSEL 427
           + L  +  + L +     ++  +++ L  LQ+L+++ N              + +     
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             +++  +  NNLE    +  L++    L  L    N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVK-LGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 375 DGNELPRII------SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELH 428
             +              N   +           +L  L  ++L N      +P+FL +L 
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 429 FLRVLNLTGNNLEG 442
            L+ LN+  N    
Sbjct: 516 ELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 379 LPRIISLNLSS---SGISGEIITYI--FSLTSLQALDLSNNSLTGSVPEFLSELHFLRVL 433
           +  + S++ S          I   +  +   +   + LS N +     E  +    +  +
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLS 460
            L+ N +  S+P   L+       +  
Sbjct: 703 ILSNNLMT-SIPENSLKPKDGNYKNTY 728

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           + ++  L+   + +    +    +   L  L L  N +     +F +    +  L  + N
Sbjct: 572 MVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            L+        +     + S+    N 
Sbjct: 630 KLKYIPNIFNAKSVYV-MGSVDFSYNK 655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 376 GNELPRIISLNLSSSGISG-EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF----- 429
                ++  L  S + +     I    S+  + ++D S N +          +       
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
              + L+ N ++   P  L       + ++ +  N
Sbjct: 675 ASTVTLSYNEIQK-FPTELFATGSP-ISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 379 LPRIISLNLSS-------SGISGEIITYIFSLTSLQALDLSNNSLTGSVPE--FLSELHF 429
              I ++ LS+                   +   L  +DL  N LT S+ +    + L +
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754

Query: 430 LRVLNLTGNNLEGSVPAGL 448
           L  ++++ N    S P   
Sbjct: 755 LSNMDVSYNCFS-SFPTQP 772

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 20/84 (23%)

Query: 384 SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-------------------SVPEFL 424
            +   ++ I+  I   I  LT LQ +  +N+  T                    +     
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 425 SELHFLRVLNLTGNNLEGSVPAGL 448
           S L  L  + L        +P  L
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFL 511

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           + L  +  L +    ++ + I  +  LTSL  LD+S+++   S+   ++ L  +  ++L+
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N     +    L+     L SL++  +
Sbjct: 145 YNGAITDIMP--LKTLPE-LKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              I  L +++   +      I  L++L+ L +    +T      LS L  L +L+++ +
Sbjct: 65  AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
             + S+   +    K  + S+ +  N  +
Sbjct: 123 AHDDSILTKINTLPK--VNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           ++  +  + L++  ++   +T I    +++ L ++N   T      +S L  L  L + G
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMG 97

Query: 438 NNLEGSVPAGL 448
            ++       L
Sbjct: 98  KDVTSDKIPNL 108

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 377 NELPRIISLNLSS-SGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           N LP++ S++LS    I+   I  + +L  L++L++  + +       + +   L  L  
Sbjct: 133 NTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYA 188

Query: 436 TGNNL 440
               +
Sbjct: 189 FSQTI 193

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  LNLS + IS  I   +   L  LQ + L    L    P     L++LRVLN++G
Sbjct: 247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
           N L  ++   +     N L +L +D NP  C
Sbjct: 306 NQLT-TLEESVFHSVGN-LETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
                L+L  + I   +    F+    L+ L+L+ N ++   P   + L  LR L L  N
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            L+  +P G+     N L  L +  N
Sbjct: 91  RLK-LIPLGVFTGLSN-LTKLDISEN 114

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +I L L    I+  I  Y F  L  L+ L++S+     ++         L  L++T 
Sbjct: 175 LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            NL  +VP   +      L  L++  NP
Sbjct: 234 CNLT-AVPYLAVRHLVY-LRFLNLSYNP 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L++S + I   ++ Y+F  L +L++L++ +N L        S L+ L  L L  
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            NL  S+P   L      L+ L +    
Sbjct: 162 CNLT-SIPTEALSHLHG-LIVLRLRHLN 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L L    ++  I T   S L  L  L L + ++          L+ L+VL ++ 
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
                ++    L      L SLS+   
Sbjct: 210 WPYLDTMTPNCLYGLN--LTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L L S+ +   I   +F+ L++L  LD+S N +   +     +L+ L+ L +  
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+L   +         + L  L+++  
Sbjct: 138 NDLV-YISHRAFSGLNS-LEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 384 SLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG 442
           SL+++   ++  +       L  L+ L+LS N ++      L EL  L+ + L G  L  
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 443 SVPAGLLERAKNGLLSLSVDGN 464
            V           L  L+V GN
Sbjct: 286 VVEPYAFRGLNY-LRVLNVSGN 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           + R+  L +S++ +   +  Y   + +L+ LDLS+N L   V     +   L  L L  N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
           ++  ++         + L +L++  N 
Sbjct: 329 SIV-TLKLSTH----HTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             ++  LNL+   I  EI TY F+   ++Q L +  N++    P     +  L VL L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+L  S+P G+       L +LS+  N
Sbjct: 127 NDLS-SLPRGIFHNTPK-LTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L     +   +S +  ++   +      ++ L+L++  +        +  H ++ L +  
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N +   +P  + +     L  L ++ N
Sbjct: 103 NAIR-YLPPHVFQNVPL-LTVLVLERN 127

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           +P +  L+LS + +   +         L+ L L +NS+  ++   LS  H L+ L L+ N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCHT 470
           + + +    L       +   +VD   + C  
Sbjct: 350 DWDCNSLRALF----RNVARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           +P +  L L  + +S  +   IF     L  L +SNN+L     +       L+ L L+ 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L   V   L+      L   +V  N
Sbjct: 175 NRLT-HVDLSLIP----SLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 369 GLNCSYDGNELPRIISLNLSSSGISGEIIT--YIFSLTSLQALDLSNNSLTGSVPEFLSE 426
              C  D N     +  ++     + ++       +L + + +   N+++       L  
Sbjct: 9   EYKCI-DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 427 LHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
              + +LNL    +E  +       A   +  L +  N
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHT-IQKLYMGFN 103

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              I  L +  + I   +  ++F  +  L  L L  N L+            L  L+++ 
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NNLE  +     +   + L +L +  N
Sbjct: 151 NNLE-RIEDDTFQATTS-LQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 375 DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
            G     +  L L  + ++     ++ +   L  +DLS N L   +     ++  L  L 
Sbjct: 221 RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 435 LTGNNLE 441
           ++ N L 
Sbjct: 279 ISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 28/106 (26%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE---------------- 422
           +P +   N+S       +++ +    +++ LD S+NS+   V                  
Sbjct: 185 IPSLFHANVS-----YNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNL 238

Query: 423 ----FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
               +L     L  ++L+ N LE  +      + +  L  L +  N
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR-LERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            P++ +L++S++ +   I    F   TSLQ L LS+N LT  V   LS +  L   N++ 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 195

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L  ++   +       +  L    N
Sbjct: 196 NLLS-TLAIPI------AVEELDASHN 215

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L +S +    EI    F  L+SL+ L + N+ ++         L  L  LNL  
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
           NNL  S+P  L    +  L+ L +  NP  C
Sbjct: 276 NNLS-SLPHDLFTPLRY-LVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  LNL    I    +  +  L  L+ L++S N      P     L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            +   +     +   + L+ L++  N
Sbjct: 253 QVS-LIERNAFDGLAS-LVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L L  + ++  I +  F  L+ L+ L L NN +        + +  L  L+L  
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
                 +  G  E   N L  L++   
Sbjct: 181 LKKLEYISEGAFEGLFN-LKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
                LNL  + I   I    F  L  L+ L L  NS+        + L  L  L L  N
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            L   +P+G  E     L  L +  NP
Sbjct: 134 WLT-VIPSGAFEYLSK-LRELWLRNNP 158

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLT 436
           L ++  L L ++ I   I +Y F+ + SL  LDL     L          L  L+ LNL 
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             N++  +P   L      L  L + GN 
Sbjct: 205 MCNIK-DMPN--LTPLVG-LEELEMSGNH 229

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           + R+  L +S++ +   +  Y   + +L+ LDLS+N L   V     +   L  L L  N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
           ++  ++           L +L++  N 
Sbjct: 335 SIV-TLKLSTHHT----LKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L     +   +S +  ++   +      ++ L+L++  +        +  H ++ L +  
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N +   +P  + +     L  L ++ N
Sbjct: 109 NAIR-YLPPHVFQNVPL-LTVLVLERN 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           +P +  L+LS + +   +         L+ L L +NS+  ++   LS  H L+ L L+ N
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCHT 470
           + + +    L       +   +VD   + C  
Sbjct: 356 DWDCNSLRALF----RNVARPAVDDADQHCKI 383

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           +P +  L L  + +S  +   IF     L  L +SNN+L     +       L+ L L+ 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L   V   L+      L   +V  N
Sbjct: 181 NRLT-HVDLSLIP----SLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              I  L +  + I   +  ++F  +  L  L L  N L+            L  L+++ 
Sbjct: 98  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NNLE  +     +   + L +L +  N
Sbjct: 157 NNLE-RIEDDTFQATTS-LQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 368 QGLNCSYDGNELPRIISLNLSSSGISGEIITYI--FSLTSLQALDLSNNSLTGSVPEFLS 425
               C  D N     +  ++     + ++       +L + + +   N+++       L 
Sbjct: 14  PEYKCI-DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 72

Query: 426 ELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
               + +LNL    +E  +       A   +  L +  N
Sbjct: 73  SFRQVELLNLNDLQIE-EIDTYAFAYAHT-IQKLYMGFN 109

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
              +  L L  + ++     ++ +   L  +DLS N L   +     ++  L  L ++ N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 439 NLE 441
            L 
Sbjct: 289 RLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 28/106 (26%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE---------------- 422
           +P +   N+S + +     + +    +++ LD S+NS+   V                  
Sbjct: 191 IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNL 244

Query: 423 ----FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
               +L     L  ++L+ N LE  +      + +  L  L +  N
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR-LERLYISNN 288

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK---QFQAEV--QYIVHH 587
           ++F+  + +GKG FG VY    + N   +A+K+L  S ++      Q + E+  Q  + H
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            N+  +  Y  +   + L+ EF  +G L + L          + 
Sbjct: 74  PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSA 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
            +E   +  L+  + G++   I  +  L  L+ L+LS+N ++G +     +   L  LNL
Sbjct: 38  TDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           +GN ++       L++ +N L SL +    
Sbjct: 96  SGNKIKDLSTIEPLKKLEN-LKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 384 SLNLSSSGIS-GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG 442
            L L +S  + G++         L+ L   N  LT S+   L +L+ L+ L L+ N +  
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVS- 77

Query: 443 SVPAGLLERAKNGLLSLSVDGN 464
                L E+  N L  L++ GN
Sbjct: 78  GGLEVLAEKCPN-LTHLNLSGN 98

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
             E   +  L+L + G+    ++ +  L  L+ L+LS N + G +     +L  L  LNL
Sbjct: 45  TAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           +GN L+       L++ +  L SL +    
Sbjct: 103 SGNKLKDISTLEPLKKLEC-LKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 376 GNELPRIISLNLSSSGIS-GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
                 +  L L +   + G+I        +L+ L L N  L  SV   L +L  L+ L 
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLE 77

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+ N +       L E+  N L  L++ GN
Sbjct: 78  LSENRIF-GGLDMLAEKLPN-LTHLNLSGN 105

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             ++  L L  + I   I     S L +L+ L L NN L+  VP  L +L  L+V+ L  
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 438 NNLEGSVPAGLLERAKNG-----LLSLSVDGNP 465
           NN+   V          G        +S+  NP
Sbjct: 274 NNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 370 LNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE 422
           + CS  G   +P+ IS     L+L ++ IS E+    F  L  L AL L NN ++    +
Sbjct: 38  VQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEK 96

Query: 423 FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             S L  L+ L ++ N+L   +P  L       L+ L +  N
Sbjct: 97  AFSPLRKLQKLYISKNHLV-EIPPNLPS----SLVELRIHDN 133

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              +  L+L  + I   I        + L  L L +N +       LS L  LR L+L  
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           N L   VPAGL       L  + +  N 
Sbjct: 251 NKLS-RVPAGL--PDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-------FLSELHFLR 431
           LP +  L+L ++ +S  +   +  L  LQ + L  N++T  V         F  +  +  
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 432 VLNLTGNNLE-GSVPAGLLERAKNGLLSLSVDGN 464
            ++L  N +    V         +  L++     
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITY-IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           + L  +  + +  + +         F    L  L +S   LT  +P+ L     L  L+L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHL 200

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             N ++ ++    L R    L  L +  N 
Sbjct: 201 DHNKIQ-AIELEDLLRYSK-LYRLGLGHNQ 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++  L +S + +  EI   + S  SL  L + +N +        S L  +  + + GN
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 439 NL-EGSVPAGLLERAKNGLLSLS 460
            L       G  +  K   L +S
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRIS 180

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L ++  L+LS + +S  I    F  L  LQ L +  + +          L  L  +NL  
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
           NNL   +P  L     + L  + +  NP  C
Sbjct: 265 NNLT-LLPHDLFTPLHH-LERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L LS + I   I    F+ L +L  L+L +N LT         L  L+ L L  
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
           N +E S+P+    R  + L  L +    +L
Sbjct: 146 NPIE-SIPSYAFNRIPS-LRRLDLGELKRL 173

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  LNL+   +    I  +  L  L  LDLS N L+   P     L  L+ L +  +
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            ++  +     +  ++ L+ +++  N
Sbjct: 242 QIQ-VIERNAFDNLQS-LVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
                LNL  + I   I    F  L  L+ L LS N +        + L  L  L L  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            L  ++P G        L  L +  NP
Sbjct: 123 RLT-TIPNGAFVYLSK-LKELWLRNNP 147

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L L  + ++  I    F  L+ L+ L L NN +        + +  LR L+L  
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
                 +  G  E   N L  L++   
Sbjct: 170 LKRLSYISEGAFEGLSN-LRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLS-NNSLTGSVPEFLSELHFLRVLNLT 436
           L ++  L L ++ I   I +Y F+ + SL+ LDL     L+         L  LR LNL 
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             NL   +P   L      L  L + GN 
Sbjct: 194 MCNLR-EIPN--LTPLIK-LDELDLSGNH 218

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQA------------- 579
           N++   + + +G F  +     E +    A+K    S ++  + F               
Sbjct: 31  NDYRIIRTLNQGKFNKIILC--EKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88

Query: 580 ------EVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRI 633
                 ++   + ++   T  G       + +IYE+M   ++ +       L       I
Sbjct: 89  DFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFI 148

Query: 634 ATEAA 638
             +  
Sbjct: 149 PIQVI 153

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L L  + IS  +    F  L SL  L L  N +    P    +L  L  L L  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           NNL  ++P   L   +  L  L ++ NP +C    C 
Sbjct: 211 NNLS-ALPTEALAPLRA-LQYLRLNDNPWVC---DCR 242

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT 436
           L  +  L+LS +     +    F  L  L  L L    L   +       L  L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N L+ ++P        N L  L + GN
Sbjct: 138 DNALQ-ALPDDTFRDLGN-LTHLFLHGN 163

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEF-LSELHFLRVLNLT 436
           L  +  L L  + +   +    F  L +L  L L  N ++ SVPE     LH L  L L 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N +   V           L++L +  N
Sbjct: 186 QNRVA-HVHPHAFRDLGR-LMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
                + L  + IS  +    F    +L  L L +N L        + L  L  L+L+ N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
               SV           L +L +D  
Sbjct: 91  AQLRSVDPATFHGLGR-LHTLHLDRC 115

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK---QFQAEV--QYIVHH 587
            +F+   ++GKG F  VY       G +VA+KM+   ++       + Q EV     + H
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            ++  L  Y ++   + L+ E    G +  +L
Sbjct: 71  PSILELYNYFEDSNYVYLVLEMCHNGEMNRYL 102

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           +L ++  LN+ S+ IS   I+ + +L+ L +L L+NN L     E +  L  L  L L+ 
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           N++    P   L +    + S       
Sbjct: 321 NHITDIRPLASLSK----MDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           N L ++ SL L+++ +  E +  I  LT+L  L LS N +T   P  L+ L  +   +  
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 437 GNNLE 441
              ++
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            L  +  L L+   IS   I+ + +LT + +L+L  N    S    LS +  L  L +T 
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           + ++   P   L      L SLS++ N
Sbjct: 165 SKVKDVTPIANLTD----LYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 8e-07
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  LNL+ + I+   I+ + +L  L  L +  N +T      L  L  LR L L  +
Sbjct: 65  LTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
           N+    P   L +    + SL++  N  L
Sbjct: 121 NISDISPLANLTK----MYSLNLGANHNL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            EL  I  L ++   ++   I  I  LT+L+ L+L+ N +T   P  LS L  L  L + 
Sbjct: 41  EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG 96

Query: 437 GNNLE 441
            N + 
Sbjct: 97  TNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             + R+ SL + ++ I+   ++ + +L+ L  L++  N ++      + +L  L++LN+ 
Sbjct: 218 ANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N +        L +    L SL ++ N
Sbjct: 274 SNQISDISVLNNLSQ----LNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             L ++ SLNL ++      ++ + ++T L  L ++ + +    P  ++ L  L  L+L 
Sbjct: 129 ANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N +E   P   L      L   +   N
Sbjct: 186 YNQIEDISPLASLTS----LHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++ +L + ++ I+   I+ + +LT+L+ L L+ ++++      L+ L  +  LNL  N
Sbjct: 87  LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGAN 142

Query: 439 NLEGSVPA 446
           +    +  
Sbjct: 143 HNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + SL+L+ + I    I+ + SLTSL       N +T   P  ++ +  L  L +  N
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            +    P   L +    L  L +  N
Sbjct: 232 KITDLSPLANLSQ----LTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L   I   L  + ++   +     L S+  L ++   +     + +  L  L  LNL GN
Sbjct: 21  LAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN 76

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            +    P   L +    L +L +  N
Sbjct: 77  QITDISPLSNLVK----LTNLYIGTN 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 384 SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGS 443
           +L    + I+   I     L       L   S+T  V     EL  +  L + G  +  S
Sbjct: 4   TLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-S 58

Query: 444 VPAGLLERAKNGLLSLSVDGN 464
           +    +E   N L  L+++GN
Sbjct: 59  IQG--IEYLTN-LEYLNLNGN 76

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L ++  L L S      I    F +L +L+ LDL ++ +    P+    L  L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 438 NNL-EGSVPAGLLERAKNGLLSLSVDGN 464
             L +  +  G     K  L  L +  N
Sbjct: 107 CGLSDAVLKDGYFRNLKA-LTRLDLSKN 133

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 377 NELPRIISLNLSSSGISGEIITYI-----FSLTSLQALDLSNNSLTGSVPEFLSELHFLR 431
           +E P +  L L  + +     T +       L+ LQ L L++N L    P   S L  LR
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 432 VLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            L+L  N L   +    L      L  L +  N 
Sbjct: 508 GLSLNSNRLT-VLSHNDL---PANLEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  LNL+ + I+ +I    F  L +LQ L+LS N L          L  +  ++L  
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           N++   +     +  +  L +L +  N 
Sbjct: 348 NHIA-IIQDQTFKFLEK-LQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  LNLS + +  E+ +  F  L  +  +DL  N +     +    L  L+ L+L  
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 438 NNLE 441
           N L 
Sbjct: 372 NALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 384 SLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLE 441
            ++LS + +    I Y    +  LQ L L+ N  +    +   SE   L  L L  N L+
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 442 GSVPAGLLERAKNGLLSLSV 461
            +    L      GL  L V
Sbjct: 465 LAWETELCWDVFEGLSHLQV 484

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 379 LPRIISLNLSSSGISGEII--TYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNL 435
           L  +  L L   G+S  ++   Y  +L +L  LDLS N +    +     +L+ L+ ++ 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           + N +       L       L   S+  N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 372 CSYDGNELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFL 430
           CS+DG               +     T +   L + + L LS N +          L  L
Sbjct: 2   CSFDGR------IAFYRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQL 50

Query: 431 RVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           ++L L       ++         N L  L +  + 
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPN-LRILDLGSSK 84

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 371 NCSYDGNELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHF 429
             ++ G     +  L+LS   +   + + +F  L  L+ L+L+ N +     E    L  
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+VLNL+ N L   + +         +  + +  N
Sbjct: 316 LQVLNLSYNLLG-ELYSSNFYGLPK-VAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHF--LRVLNL 435
           L  +  L+LS + I    +   F  L SL+++D S+N +       L  L    L   +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 436 TGNNLEGSVPAGLLE 450
             N+L   V     +
Sbjct: 182 AANSLYSRVSVDWGK 196

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFS---LTSLQALDLSNNSLTGSVPEFLSELHFLRVL 433
                I+        I  +     F+    +S++ LDLS+  +          L  L+VL
Sbjct: 237 ILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           NL  N +   +         N L  L++  N
Sbjct: 296 NLAYNKIN-KIADEAFYGLDN-LQVLNLSYN 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
             L  +  L LS + IS  +     +    L+ L L+NN L   VP  L++  +++V+ L
Sbjct: 213 KGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 436 TGNNLE----GSVPAGLLERAKNGLLSLSVDGNP 465
             NN+                K     +S+  NP
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           P    L+L ++ I+ EI    F  L +L  L L NN ++   P   + L  L  L L+ N
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            L+  +P  + +     L  L V  N
Sbjct: 111 QLK-ELPEKMPK----TLQELRVHEN 131

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            P +  L+L  + I+ ++       L +L  L LS NS++      L+    LR L+L  
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           N L   VP GL       +  + +  N 
Sbjct: 250 NKLV-KVPGGL--ADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 377 NELPRIISLNLSSSGI-SGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           N L ++I + L ++ + S  I    F  +  L  + +++ ++T ++P+ L     L  L+
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELH 198

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           L GN +   V A  L+   N L  L +  N 
Sbjct: 199 LDGNKIT-KVDAASLKGLNN-LAKLGLSFNS 227

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 10/93 (10%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG------SVPEFLSELHFLRV 432
            P +  L+L+++ +  ++   +     +Q + L NN+++         P + ++      
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 433 LNLTGNNLE-GSVPAGLLERAKNGLLSLSVDGN 464
           ++L  N ++   +             ++ +   
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYV-RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEF-LSELHFLRVLNLTG 437
           L ++  L LS + +  E+   +    +LQ L +  N +T  V +   + L+ + V+ L  
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 154

Query: 438 NNL-EGSVPAGLLERAKNGLLSLSVDGN 464
           N L    +  G  +  K  L  + +   
Sbjct: 155 NPLKSSGIENGAFQGMKK-LSYIRIADT 181

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTL 593
           +  + +G G FG V+       G   A K +        +  + E+Q +  + H  L  L
Sbjct: 160 DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNL 219

Query: 594 VGYCDEDTNMGLIYEFMAKGNL 615
               ++D  M +IYEFM+ G L
Sbjct: 220 HDAFEDDNEMVMIYEFMSGGEL 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
            P  ++L L S  +  +     F L+ LQ + +    L   +P+ + +   L  L L  N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
            L  ++PA  +      L  LS+   P+L
Sbjct: 138 PLR-ALPAS-IASLNR-LRELSIRACPEL 163

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 370 LNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF 429
            + S +   L  + SL L  +GI   +   I +L +L++L + N+ L+ ++   +  L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 430 LRVLNLTGNNLEGSVPAGL 448
           L  L+L G     + P   
Sbjct: 231 LEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            L  + SL + +S +S  +   I  L  L+ LDL   +   + P        L+ L L  
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 438 NNLEGSVPA--GLLERAKNGLLSLSVDGNPKL 467
            +   ++P     L +    L  L + G   L
Sbjct: 263 CSNLLTLPLDIHRLTQ----LEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 378 ELPRIISLNLSSSGISG--EIITYIFSLTS--LQALDLSNNSLTGSVPEFLSELHFLRVL 433
                 +  + +            +   T     AL+L +  L    P+    L  L+ +
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 434 NLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            +    L   +P   +++    L +L++  N
Sbjct: 110 TIDAAGLM-ELPDT-MQQFAG-LETLTLARN 137

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLT 436
            LP++  L+L                  L+ L L + ++L  ++P  +  L  L  L+L 
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLR 285

Query: 437 GNNLEGSVPAGLLERAKNGLLSLS 460
           G      +P+ + +   N ++ + 
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 400 IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN-------NLEGSVPA 446
           I  LT L+ LDL        +P  +++L    ++ +  +       +   + PA
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 523 RKFSYSDVAKITNNFE------KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ 576
           +K+    V     +        + +G G FG V+    +  G     K ++         
Sbjct: 35  KKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT 94

Query: 577 FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
            + E+  +  +HH  L  L    ++   M LI EF++ G L
Sbjct: 95  VKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL 135

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 9/108 (8%)

Query: 521 KNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKM-----LSASSVQG 573
           +N  F    + ++   +     IG+G +G V            A+K+     +   + + 
Sbjct: 12  ENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKD 71

Query: 574 YKQFQAEVQ--YIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
            ++ + EV+    +HH N+  L    +++  + L+ E    G+L + L
Sbjct: 72  VERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKL 119

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             R     ++ S +  + +  +     +++ LDLS N L+      L+    L +LNL+ 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L  ++    L      L +L ++ N
Sbjct: 68  NVLYETLDLESLST----LRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++ +L+LSS+ ++  +     S   +  + L NN L   + + L     L   +L GN
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
                       + +  + +++     KL
Sbjct: 248 GFHCGTLRDFFSKNQR-VQTVAKQTVKKL 275

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++  LNLSS+ +       + SL++L+ LDL+NN +       L     +  L+   N
Sbjct: 57  FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN 109

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+   V          G  ++ +  N
Sbjct: 110 NIS-RVSCSRG----QGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 400 IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL 459
             +    +   ++++SL  ++         ++ L+L+GN L   + A  L      L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK-LELL 63

Query: 460 SVDGN 464
           ++  N
Sbjct: 64  NLSSN 68

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 379 LPRIISLNLSSSGISG-EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             R+  L+L  + I          S  +L+ L+L  N +   V   +     L+ L+L+ 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L   +       A   +  +S+  N
Sbjct: 201 NKLA-FMGPEFQSAAG--VTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             P I +L+ +++ IS  +          + + L+NN +T            ++ L+L  
Sbjct: 97  VGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N ++ +V    L  + + L  L++  N
Sbjct: 154 NEID-TVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + +L+L+++ +       +    S++ L  +NN+++  V    S     + + L  N
Sbjct: 79  LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANN 130

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            +   +           +  L +  N 
Sbjct: 131 KIT-MLRDLDEGCRSR-VQYLDLKLNE 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              +  L L SS I+  I    F SL SL+ LDLS+N L+     +   L  L+ LNL G
Sbjct: 49  CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
           N  +      L     N L +L +        
Sbjct: 108 NPYQTLGVTSLFPNLTN-LQTLRIGNVETFSE 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 377 NELPRIISLNLSSSGISG-EIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
              P + +L LS + +   +    I   L +L +LD+S N+    +P+       +R LN
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+   +   V   +       L  L V  N
Sbjct: 417 LSSTGIR-VVKTCIP----QTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 370 LNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE 422
            +        +P  ++     L+LS + I+  I         +LQ L L ++ +     +
Sbjct: 10  CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 423 FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
               L  L  L+L+ N+L  S+ +       + L  L++ GNP
Sbjct: 69  AFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSS-LKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 28/115 (24%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHF--------- 429
             ++  LNLSS+GI   + T I    +L+ LD+SNN+L  S   FL  L           
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLK 464

Query: 430 ----------LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
                     L V+ ++ N L+ SVP G+ +R  + L  + +  NP  C   SC 
Sbjct: 465 TLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTS-LQKIWLHTNPWDC---SCP 514

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSV---PEFLSELHFLRVLN 434
           L ++  + + +S +   +       L SL+ LDLS N +                L+ L 
Sbjct: 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 435 LTGNNLEG-SVPAGLLERAKNGLLSLSVDGN 464
           L+ N+L        +L   KN L SL +  N
Sbjct: 368 LSQNHLRSMQKTGEILLTLKN-LTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLT 436
           L  +  L+LS + +S  + +  F  L+SL+ L+L  N      V      L  L+ L + 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
                  +         + L  L +   
Sbjct: 132 NVETFSEIRRIDFAGLTS-LNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            LPR+  L +S + +    +        L  + +S N L          L  L+ + L  
Sbjct: 449 FLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 438 NNL 440
           N  
Sbjct: 507 NPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  + +L + +     EI    F+ LTSL  L++   SL     + L  +  +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           +     +     +   + +  L +    
Sbjct: 182 SESA-FLLEIFADILSS-VRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 378 ELPRIISLNLSSSGISGEII---TYIFSLTSLQALDLSNNSLT--GSVPEFLSELHFLRV 432
            L  +  L+LS + +  E +       +  SLQ L LS N L       E L  L  L  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 433 LNLTGNNLE 441
           L+++ N   
Sbjct: 392 LDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
           L  +  L + +  +     +    S+  +  L L  +     +  F   L  +R L L  
Sbjct: 147 LTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 438 NNLEG 442
            NL  
Sbjct: 206 TNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFS-----LTSLQALDLSNNSLTGSVPEFLSELHFLR 431
           +EL ++ ++ +    I    + Y  S     L  ++ + + N+ +      F   L  L 
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 432 VLNLTGNNL 440
            L+L+ N +
Sbjct: 338 FLDLSENLM 346

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLV 594
           F + +G+GGF  V       +G   A+K +     Q  ++ Q E     + +H N+  LV
Sbjct: 33  FIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLV 92

Query: 595 GYCDEDTNMG----LIYEFMAKGNLEEHL 619
            YC  +        L+  F  +G L   +
Sbjct: 93  AYCLRERGAKHEAWLLLPFFKRGTLWNEI 121

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT 436
           L  ++ LNLS + +   I + +F +L  L+ LDLS N +  ++ +     L  L+ L L 
Sbjct: 322 LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKR-------QNNKYIVPVAA 487
            N L+ SVP G+ +R  + L  + +  NP  C   SC +          N      +A
Sbjct: 380 TNQLK-SVPDGIFDRLTS-LQKIWLHTNPWDC---SCPRIDYLSRWLNKNSQKEQGSA 432

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 371 NCSYDGNELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE--FLSEL 427
           N ++ G E   + + +LS S I   ++  +FS  T L+ L L+ N +   + +  F   L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG-L 322

Query: 428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             L  LNL+ N L GS+ + + E     L  L +  N
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDK-LEVLDLSYN 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLT 436
              +  L L+ + I+ +I    F  LT L  L+LS N L  S+   +   L  L VL+L+
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLS 355

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N++  ++         N L  L++D N
Sbjct: 356 YNHIR-ALGDQSFLGLPN-LKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSV--PEFLSELHFLRVLNL 435
           L  +I L L  +    ++ T  F  L +L+ L L+  +L G+V    F   L  L +L L
Sbjct: 78  LSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
             NN++   PA      +     L +  N 
Sbjct: 137 RDNNIKKIQPASFFLNMRR-FHVLDLTFNK 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 371 NCSYDG-NELPRI----ISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE-- 422
            C   G +++P +      ++LS + I+ E+    FS L  LQ L +   +    +    
Sbjct: 16  ICINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 423 FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           F   L  L +L L  N     +  G      N L  L++   
Sbjct: 75  F-RGLSSLIILKLDYNQFL-QLETGAFNGLAN-LEVLTLTQC 113

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++ +L+LSS+ ++  +     S   +  + L NN L   + + L     L   +L GN
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
                       +    + +++     KL  
Sbjct: 248 GFHCGTLRDFFSKN-QRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             R     ++ S +  + +  +     +++ LDLS N L+      L+    L +LNL+ 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L  ++    L      L +L ++ N
Sbjct: 68  NVLYETLDLESLST----LRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++  LNLSS+ +       + SL++L+ LDL+NN +       L     +  L+   N
Sbjct: 57  FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+   V          G  ++ +  N
Sbjct: 110 NIS-RVSCSRG----QGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 400 IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL 459
             +    +   ++++SL  ++         ++ L+L+GN L   + A  L      L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK-LELL 63

Query: 460 SVDGN 464
           ++  N
Sbjct: 64  NLSSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 379 LPRIISLNLSSSGISG-EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             R+  L+L  + I          S  +L+ L+L  N +   V   +     L+ L+L+ 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 438 NNLEGSVPAGL--LERAKNGLLSLSVDGN 464
           N L   +             +  +S+  N
Sbjct: 201 NKLA-FMGPEFQSAAG----VTWISLRNN 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             P I +L+ +++ IS  +          + + L+NN +T            ++ L+L  
Sbjct: 97  VGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N ++    A L   +   L  L++  N
Sbjct: 154 NEIDTVNFAELAASSDT-LEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + +L+L+++ +       +    S++ L  +NN+++  V    S     + + L  N
Sbjct: 79  LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANN 130

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            +   +           +  L +  N
Sbjct: 131 KIT-MLRDLDEGCRSR-VQYLDLKLN 154

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGY 596
            V+GKG +G VY G    N  ++A+K +     +  +    E+     + HKN+   +G 
Sbjct: 28  VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS 87

Query: 597 CDEDTNMGLIYEFMAKGNL 615
             E+  + +  E +  G+L
Sbjct: 88  FSENGFIKIFMEQVPGGSL 106

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 379 LPRIISLNLSSSGISGEIITYI----FS-LTSLQALDLSNNSLTGSVPE--FLSELHFLR 431
           L ++  + + ++      +TYI       L  L+ L + N  L    P+   +       
Sbjct: 79  LSKVTHIEIRNT----RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFF 133

Query: 432 VLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +L +T N    S+P    +   N  L+L +  N
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 383 ISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE--FLSELHFLRVLNLTGNNL 440
           ++L L ++G +  +  Y F+ T L A+ L+ N     + +  F        +L+++  ++
Sbjct: 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

Query: 441 EGSVPAGLLERAKNGLLSLSVDGNPKL 467
             ++P+  LE     L  L       L
Sbjct: 218 T-ALPSKGLE----HLKELIARNTWTL 239

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 512 GRKKGSWELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS 569
           G            F     A  ++ ++  +V+GKG FG V     +  G + AVK++S  
Sbjct: 3   GSMMDHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKR 62

Query: 570 SVQG---YKQFQAEVQYIVH--HKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
            V+     +    EVQ +    H N+  L  + ++     L+ E    G L
Sbjct: 63  QVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           G  L +  +++ S + I    +     L  L+ L ++NN +          L  L  L L
Sbjct: 38  GATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           T N+L        L   K+ L  L +  NP
Sbjct: 96  TNNSLVELGDLDPLASLKS-LTYLCILRNP 124

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQYI--VHHKNLTT 592
               ++G+G    V+ G  +  G   A+K+ +  S          E + +  ++HKN+  
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVK 71

Query: 593 LVGYCDEDTNMG--LIYEFMAKGNLEEHL 619
           L    +E T     LI EF   G+L   L
Sbjct: 72  LFAIEEETTTRHKVLIMEFCPCGSLYTVL 100

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
             ++ SLNLS +G+  ++   + +   L  LDLS N L    P    EL  +  L+L GN
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGN 306

Query: 439 NLEGS 443
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 377 NELPRIISLNLSS---SGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRV 432
            + P +  L L +      SG       +   LQ LDLS+NSL  +           L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 433 LNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           LNL+   L+  VP GL  +    L  L +  N
Sbjct: 258 LNLSFTGLK-QVPKGLPAK----LSVLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 377 NELPRIISLNLSSSGISGEI----ITYIFSLTSLQALDLSNN---SLTGSVPEFLSELHF 429
              P + +L+LS +   GE             +LQ L L N    + +G      +    
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           L+ L+L+ N+L  +  A   +     L SL++   
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQ-LNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 14/109 (12%)

Query: 370 LNCSYDGNELPRIISL-----------NLSSSGISGEIIT-YIFSLTSLQALDLSNNSLT 417
            N    G   P ++             N+S +     +     +    L+ L ++     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 418 GSVPEFLSELHFLRVLNLTGNNLEG--SVPAGLLERAKNGLLSLSVDGN 464
               E +     L  L+L+ N   G   + + L       L  L++   
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 381 RIISLNLSSSGISGEIITY---IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            +  L + ++ I   I+     +  ++ LQ L L N  +TG+ P  L E     +  L  
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 438 NNLEGSVPAGLLERAKN----GLLSLSVDGN 464
            N+  +     L   +     GL  LS+   
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 524 KFSYSDVAKITNNFEK--------VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK 575
            F +  V                 ++G G FG V+       G ++A K++    ++  +
Sbjct: 72  PFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKE 131

Query: 576 QFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           + + E+  +  + H NL  L    +   ++ L+ E++  G L
Sbjct: 132 EVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVH--HKNLTTL 593
             E  IG+G +G V     +    + A K +    V+   +F+ E++ +    H N+  L
Sbjct: 12  TLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRL 71

Query: 594 VGYCDEDTNMGLIYEFMAKGNL 615
               +++T++ L+ E    G L
Sbjct: 72  YETFEDNTDIYLVMELCTGGEL 93

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 506 KRRKQGGRKKGSWELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAV 563
              ++    +G  +     F  S    ++  ++  K +G G +G V     +    + A+
Sbjct: 8   SSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAI 67

Query: 564 KMLSASSVQG--YKQFQAEVQYIVH--HKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           K++  +SV      +   EV  +    H N+  L  + ++  N  L+ E    G L
Sbjct: 68  KIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGEL 123

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV 444
           LNLSS+ ++G +   +     ++ LDL NN +  S+P+ ++ L  L+ LN+  N L+ SV
Sbjct: 433 LNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488

Query: 445 PAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
           P G+ +R  + L  + +  NP  C   +C 
Sbjct: 489 PDGVFDRLTS-LQYIWLHDNPWDC---TCP 514

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 531 AKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ----GYKQFQAEVQY- 583
           AK+   +    ++G+G +G V          + AVK+L    ++    G    + E+Q  
Sbjct: 1   AKLIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLL 60

Query: 584 -IVHHKNLTTL--VGYCDEDTNMGLIYEFMAKGNLE 616
             + HKN+  L  V Y +E   M ++ E+   G  E
Sbjct: 61  RRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQE 96

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 370 LNCSYDG-NELPRIISLNLSSSGISGEIITYI-FSLTSLQALDLSNNSLTGSVPEFLSEL 427
           LN    G   LP  +  ++++  I    +T +      L+ L++S N LT S+P     L
Sbjct: 45  LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGL 103

Query: 428 HFLRVLNLTGNNLEGSVPAGL--LERAKNGLLSLS 460
             L + +    +L  ++P+GL  L    N L SL 
Sbjct: 104 LELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLP 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 377 NELPRIISLNLSSSGISGEIITYI-FSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
                +  L +S + +     T +    + L +L +  N LT  +PE L  L     +NL
Sbjct: 238 VLPSELKELMVSGNRL-----TSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKY 481
            GN L        L      + S      P +    +         
Sbjct: 292 EGNPLS-ERTLQALRE----ITSAPGYSGPIIRFDMAGASAPRETR 332

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 376 GNELPRIISLNLSSSGISGEIITYI-FSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
              LP + S  L    I G  +T +      LQ L +S+N L  S+P        L  L 
Sbjct: 113 LTHLPALPS-GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPA---LPSELCKLW 167

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
              N L  S+P        +GL  LSV  N
Sbjct: 168 AYNNQLT-SLPMLP-----SGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 402 SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSV 461
             + L+ L +S N LT S+P   SE   L+ L ++GN L  S+P        +GLLSLSV
Sbjct: 219 LPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLP-----SGLLSLSV 268

Query: 462 DGN 464
             N
Sbjct: 269 YRN 271

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
              P +  L++S + ++  +      L  L      NN LT S+P        L+ L+++
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPM---LPSGLQELSVS 189

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N L  S+P        + L  L    N
Sbjct: 190 DNQLA-SLPTLP-----SELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 402 SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSV 461
             + LQ L +S+N L  S+P   SEL+ L   N   N L  S+PA       +GL  L V
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALP-----SGLKELIV 228

Query: 462 DGNP 465
            GN 
Sbjct: 229 SGNR 232

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 14/117 (11%)

Query: 540 VIGKGGFGTVYHGY-LEFNGTQVAVKML-SASSVQGYKQFQAEVQYI--VHHKNLTTL-- 593
            I  GG G +Y       NG  V +K L  +   +      AE Q++  V H ++  +  
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFN 146

Query: 594 VGYCDEDTNMGLIY---EFMAKGNLEEHLSGANTLTWEARLRIATEAAQG---SHSA 644
                +     + Y   E++   +L+        L     +    E        HS 
Sbjct: 147 FVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK--LPVAEAIAYLLEILPALSYLHSI 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE----FLSELHFLRVL 433
           L  +  L L ++ I   +    F  +  LQ L LS N ++   P       ++L  L +L
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 434 NLTGNNLEGSVPAGLLER-AKNGLLSLSVDGNPKLCHTASCN 474
           +L+ N L+  +P   L++        L +  NP  C    C 
Sbjct: 169 DLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC---DCK 206

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 370 LNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPE 422
           L+CS      +P+ +      L+LS + +S     +  + LT+L +L LS+N L     E
Sbjct: 23  LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82

Query: 423 FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
               +  LR L+L+ N+L  ++   L    +  L  L +  N 
Sbjct: 83  AFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQA-LEVLLLYNNH 123

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEF-LSELHFLRVLNLT 436
           +P +  L+LSS+ +   +  ++FS L +L+ L L NN +   V      ++  L+ L L+
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 437 GNNLEGSVPAGLLERAKN--GLLSLSVDGN 464
            N +    P  L++       L+ L +  N
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQYI--VHHKNLTT 592
               ++G+G    V+ G  +  G   A+K+ +  S          E + +  ++HKN+  
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVK 71

Query: 593 LVGYCDEDTNMG--LIYEFMAKGNLEEHL 619
           L    +E T     LI EF   G+L   L
Sbjct: 72  LFAIEEETTTRHKVLIMEFCPCGSLYTVL 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +L ++ +L     GI    I  +  L +L  ++ SNN LT   P  L  L  L  + + 
Sbjct: 43  TDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 98

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N +    P   L      L  L++  N
Sbjct: 99  NNQIADITPLANL----TNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  + +L L+ + +    I+ I +L +L  L L  N+++   P  +S L  L+ L    N
Sbjct: 286 LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNP 465
            +        L      +  LS   N 
Sbjct: 342 KVSDVSSLANL----TNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++  L L ++ IS   I+ +  LT+L  L+L+ N L       +S L  L  L L  N
Sbjct: 264 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 319

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
           N+    P   L +    L  L    N
Sbjct: 320 NISDISPVSSLTK----LQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             L  +  L+L+ + +    I  + SLT+L  LDL+NN ++   P  LS L  L  L L 
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            N +    P   L      L +L ++ N 
Sbjct: 274 ANQISNISPLAGLTA----LTNLELNENQ 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            L  +  L++SS+ +S   I+ +  LT+L++L  +NN ++      L  L  L  L+L G
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNG 230

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGN 464
           N L+       L    N L  L +  N
Sbjct: 231 NQLKDIGT---LASLTN-LTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L  +  +N S++ ++   IT + +LT L  + ++NN +    P  L+ L  L  L L  N
Sbjct: 67  LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGN 464
            +    P   L      L  L +  N
Sbjct: 123 QITDIDPLKNLTN----LNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L +++ + ++++ I+   IT + +LT+L  L L NN +T    + L  L  L  L L+ N
Sbjct: 89  LTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN 144

Query: 439 NLEG 442
            +  
Sbjct: 145 TISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             L  +  L LSS+ IS   I+ +  LTSLQ L   N        + L+ L  L  L+++
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185

Query: 437 GNNLEG 442
            N +  
Sbjct: 186 SNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 24/127 (18%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++  L   ++ +S   ++ + +LT++  L   +N ++   P  L+ L  +  L L   
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVLLTA 498
                             +S+            +  K      I P   + +S     T 
Sbjct: 386 AWTN------APVNYKANVSIP-----------NTVKNVTGALIAP---ATISDGGSYTE 425

Query: 499 LAILWNL 505
             I WNL
Sbjct: 426 PDITWNL 432

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 358 DPCAPKVYLWQGLNCSYDGN--------ELPRIISLNLSSSGISGEIITYIFS-LTSLQA 408
           D C P      GL C+ DG             +  L + +      +       L  L+ 
Sbjct: 3   DACCPHGS--SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 409 LDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLC 468
           L +  + L    P+       L  LNL+ N LE S+    ++     L  L + GNP  C
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS--LQELVLSGNPLHC 117

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYIVH--HKNLT 591
           N   ++GKG FG V          + AVK+++ +S +         EV+ +    H N+ 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIM 84

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNL 615
            L    ++ ++  ++ E    G L
Sbjct: 85  KLFEILEDSSSFYIVGELYTGGEL 108

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +L  + SL+  +S I+   +T I  LT L  L  ++N++T ++   LS+   L  L   
Sbjct: 39  EQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACD 93

Query: 437 GNNLEGSVPAGLLER------AKNGLLSLSVDGNPKL 467
            N L  ++    L +        N L  L V  NP L
Sbjct: 94  SNKLT-NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 370 LNCSY------DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEF 423
           LNC+       D +   ++  L+   +    ++   +   T L  LD S N +T  +   
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD-- 186

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGLLER------AKNGLLSLSVDGNPKL 467
           +S+   L  LN   NN+   +      +      + N L  + V    +L
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQL 235

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLV 594
            +V+ +GGF  VY      +G + A+K L ++  +  +    EV +   +  H N+    
Sbjct: 33  RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFC 92

Query: 595 GYCDEDTNMG-------LIYEFMAKGNLEEHL 619
                            L+   + KG L E L
Sbjct: 93  SAASIGKEESDTGQAEFLLLTELCKGQLVEFL 124

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 368 QGLNCSYDGN---ELPRIISLNLSSSGISGEIITYI-FSLTSLQALDLSNNSLTGSVPEF 423
           + L+     N    LP + +  L         +T +    TSL+ L + NN LT  +PE 
Sbjct: 123 KHLDVD--NNQLTMLPELPA-LLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPEL 178

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGL--LERAKNGLLSLSVDGN 464
                 L  L+++ N LE S+PA       ++   +      N
Sbjct: 179 PES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 367 WQGLNCSYDG-NELPRIISLNLSSSGISGEIITYI-FSLTSLQALDLSNNSLTGSVPEFL 424
           +  L  +    + LP  +   ++   I+   +  +     SL+ LD  +N L+ ++PE  
Sbjct: 61  FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPELP 119

Query: 425 SELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +    L+ L++  N L   +P          L  ++ D N
Sbjct: 120 AS---LKHLDVDNNQLT-MLPELP-----ALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 377 NELPRIIS----LNLSSSGISGEIITYIFSLTSLQ----ALDLSNNSLTGSVPEFLSELH 428
             LP +      L++S++ +   +          +          N +T  +PE +  L 
Sbjct: 173 TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 429 FLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAAS 488
               + L  N L  S     L        +   D +    + +  + +QN  +     A 
Sbjct: 231 PTCTIILEDNPLS-SRIRESL-----SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

Query: 489 VVSLSVL-LTALAILWNLKRRKQG 511
                    + ++ +W+    ++ 
Sbjct: 285 TAWFPENKQSDVSQIWHAFEHEEH 308

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 377 NELPRIISLNLSSSGISGE----IITYI--FSLTSLQALDLSNNSLTGSVPEFLSELHFL 430
            +             + GE     ++ +    +     L L+  +L+ S+P+ L     +
Sbjct: 27  ADYFSAWD-KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQ--I 82

Query: 431 RVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            VL +T N L  S+P          L  L    N
Sbjct: 83  TVLEITQNALI-SLPELP-----ASLEYLDACDN 110

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ-FQAEVQYI--VHHKNLTTL 593
            ++ +G GGFG V     +  G QVA+K          ++ +  E+Q +  ++H N+ + 
Sbjct: 18  MKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSA 77

Query: 594 VGYCDEDTNMG------LIYEFMAKGNLEEHL 619
               D    +       L  E+   G+L ++L
Sbjct: 78  REVPDGLQKLAPNDLPLLAMEYCEGGDLRKYL 109

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 506 KRRKQGGRKKGSWELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAV 563
           + +        S   ++    ++   +    ++   VIG+G    V        G + AV
Sbjct: 65  QPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAV 124

Query: 564 KMLSASSVQG--------YKQFQAEVQ---YIVHHKNLTTLVGYCDEDTNMGLIYEFMAK 612
           K++  ++ +          +  + E      +  H ++ TL+   +  + M L+++ M K
Sbjct: 125 KIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184

Query: 613 GNL 615
           G L
Sbjct: 185 GEL 187

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 402 SLTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS 460
            L SLQ L L+ N +   +      +LH L +L+L  N L+ ++  G     +  + ++ 
Sbjct: 102 GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRA-IQTMH 158

Query: 461 VDGNPKLCHTASCN 474
           +  NP +C    C+
Sbjct: 159 LAQNPFIC---DCH 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 402 SLTSLQALDLSNNSLTGSVPE--FLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL 459
               L+ +DLSNN ++  +    F   L  L  L L GN +   +P  L E   + L  L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAF-QGLRSLNSLVLYGNKIT-ELPKSLFEGLFS-LQLL 109

Query: 460 SVDGN 464
            ++ N
Sbjct: 110 LLNAN 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 403 LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVD 462
           L SL +L L  N +T         L  L++L L  N +   +     +   N L  LS+ 
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN-LNLLSLY 136

Query: 463 GN 464
            N
Sbjct: 137 DN 138

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 513 RKKGSWELKNRKFSYSDVAKITNNFE---KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS 569
                 +L      +  +    N +    K +G+G F  V     +  G + A K L   
Sbjct: 6   HHSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKR 65

Query: 570 SVQG--YKQFQAEVQ---YIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
                   +   E+           +  L    +  + + LI E+ A G +
Sbjct: 66  RRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEI 116

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVH---HKNLTTLV 594
           E V+G+G    V          + AVK++         +   EV+ +     H+N+  L+
Sbjct: 18  EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELI 77

Query: 595 GYCDEDTNMGLIYEFMAKGNL 615
            + +E+    L++E M  G++
Sbjct: 78  EFFEEEDRFYLVFEKMRGGSI 98

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            E   +  L+L+   ++  ++ ++  L  +  LDLS+N L  ++P  L+ L  L VL  +
Sbjct: 438 MEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS 494

Query: 437 GNNLE 441
            N LE
Sbjct: 495 DNALE 499

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ--YIVHHKNLTTL 593
              + +G+G FG V+      +      K +           + E+    I  H+N+  L
Sbjct: 8   MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-QVLVKKEISILNIARHRNILHL 66

Query: 594 VGYCDEDTNMGLIYEFMAKGNL 615
               +    + +I+EF++  ++
Sbjct: 67  HESFESMEELVMIFEFISGLDI 88

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKM-----LSASSVQGYKQFQAEVQYIVH---HK 588
             +VIGKG F  V        G Q AVK+      ++S     +  + E   I H   H 
Sbjct: 28  LCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREAS-ICHMLKHP 86

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           ++  L+     D  + +++EFM   +L
Sbjct: 87  HIVELLETYSSDGMLYMVFEFMDGADL 113

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 11/99 (11%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 537 FEKVIGKGGFGTVYHGY-----LEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKN 589
              ++G+G F  VY           N  +  +K+   ++   +      ++ +       
Sbjct: 69  VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHM 128

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWE 628
                          L+ E  + G L   ++       +
Sbjct: 129 FMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEK 167

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI--VHHKNLT 591
           N   ++GKG FG V          + AVK+++ +S +         EV+ +  + H N+ 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIM 84

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNL 615
            L    ++ ++  ++ E    G L
Sbjct: 85  KLFEILEDSSSFYIVGELYTGGEL 108

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTL 593
            F +V+G G F  V+       G   A+K +  S        + E+  +  + H+N+ TL
Sbjct: 12  IFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTL 71

Query: 594 VGYCDEDTNMGLIYEFMAKGNL 615
               +  T+  L+ + ++ G L
Sbjct: 72  EDIYESTTHYYLVMQLVSGGEL 93

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQYI--VHHKNLTT 592
            F++ +G G FG V+      +G +  +K ++    Q   +Q +AE++ +  + H N+  
Sbjct: 25  IFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIK 84

Query: 593 LVGYCDEDTNMGLIYEFMAKGNL 615
           +    ++  NM ++ E    G L
Sbjct: 85  IFEVFEDYHNMYIVMETCEGGEL 107

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 508 RKQGGRKKGSWELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKM 565
              GG++ G    +  +F  +   K ++N++  + +GKG F  V     +  G + A K+
Sbjct: 6   SMTGGQQMG----RGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKI 61

Query: 566 LSASSVQG--YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           ++   +    +++ + E +    + H N+  L     E++   L+++ +  G L
Sbjct: 62  INTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 115

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------YKQFQAEVQ--YIVHH 587
           +  + +G G F  V     +  G + A K +     +        ++ + EV     V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLH 74

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNL------EEHLS 620
            N+ TL    +  T++ LI E ++ G L      +E LS
Sbjct: 75  HNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLS 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 402 SLTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS 460
               L+ L L+NN+LT  +P  L + L  L  L L  N+L  ++P G        L    
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL--LPFAF 201

Query: 461 VDGNPKLCHTASCN 474
           + GNP LC   +C 
Sbjct: 202 LHGNPWLC---NCE 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT 436
           LP +  L++S + ++  +       L  LQ L L  N L  ++P   L+    L  L+L 
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156

Query: 437 GNNLEGSVPAGLLER 451
            NNL   +PAGLL  
Sbjct: 157 NNNLT-ELPAGLLNG 170

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQ--YIVHHKNLT 591
           + ++ +GKG F  V     +  G + A K+++   +    +++ + E +    + H N+ 
Sbjct: 9   DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIV 68

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNL 615
            L     E++   L+++ +  G L
Sbjct: 69  RLHDSIQEESFHYLVFDLVTGGEL 92

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------YKQFQAEVQ--YIVHH 587
              + +G G F  V     +  G + A K +    +         ++ + EV     + H
Sbjct: 8   EMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRH 67

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNL------EEHLS 620
            N+ TL    +  T++ LI E ++ G L      +E L+
Sbjct: 68  PNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLT 106

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 504 NLKRRKQGGRKKGSWELKNRKFSYSDVAKIT-NNFE--KVIGKGGFGTVYHGYLEFNGTQ 560
            L+ R+   R + S  L++  +  S        +F+    +G G +G V+    + +G  
Sbjct: 25  QLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRL 84

Query: 561 VAVK--MLSASSVQGYKQFQAEV---QYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
            AVK  M      +   +  AEV   + +  H     L    +E   + L  E     +L
Sbjct: 85  YAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTEL-CGPSL 143

Query: 616 EEHLSGANTLTWEARLR-IATEAAQG 640
           ++H         EA++     +    
Sbjct: 144 QQHCEAWGASLPEAQVWGYLRDTLLA 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLT-SLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           + +  +  L+L  + I    I  + ++  +L+ L +S N +  +    + +L  LRVL +
Sbjct: 67  SGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYM 122

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIVPVAASVVSLSVL 495
           + N +        L      L  L + GNP   +         ++Y + V   + +L  L
Sbjct: 123 SNNKITNWGEIDKLAALDK-LEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 383 ISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL-- 440
           + L+     I  ++   + +L + + L LS N++   +   LS +  LR+L+L  N +  
Sbjct: 28  VELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK 84

Query: 441 -EGSVPAGLLERAKNGLLSLSVDGN 464
            E       L+   + L  L +  N
Sbjct: 85  IEN------LDAVADTLEELWISYN 103

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ------FQAEVQYI--VHH 587
           +  + +G G F  V     +  G + A K +     +  ++       + EV  +  V H
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLH 74

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNL------EEHLS 620
            N+ TL    +  T++ LI E ++ G L      +E LS
Sbjct: 75  PNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLS 113

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY-------------KQFQAEVQY 583
             + +G G +G V     +   ++ A+K++  S                  ++   E+  
Sbjct: 40  KVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISL 99

Query: 584 I--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           +  + H N+  L    ++     L+ EF   G L
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL 133

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 402 SLTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS 460
            L SL+ L L +N +T  V       L  +R+L+L  N +  +V  G  +   + L +L+
Sbjct: 103 GLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS-LSTLN 159

Query: 461 VDGNPKLCHTASCN 474
           +  NP  C   +C 
Sbjct: 160 LLANPFNC---NCY 170

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 371 NCSYDG-NELPRII-----SLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEF 423
           +CS    N++P  I      L L+++  +    T IF  L  L+ ++ SNN +T      
Sbjct: 17  DCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
                 +  + LT N LE +V   + +  ++ L +L +  N
Sbjct: 77  FEGASGVNEILLTSNRLE-NVQHKMFKGLES-LKTLMLRSN 115

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTT 592
             EK++G G  GTV      F G  VAVK +             E++       H N+  
Sbjct: 18  VSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIR 73

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQ 639
                  D  + +  E     NL++ +   N      +L+       
Sbjct: 74  YYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPIS 119

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQY--IVHHKNLTTL 593
             + +G+G +G V           VAVK++         +  + E+    +++H+N+   
Sbjct: 11  LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            G+  E     L  E+ + G L + +     +   +A+
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQ 108

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            EL  + + N  +S I    +  +   T+L+ L LS+N ++      L +L  L  L++ 
Sbjct: 38  KELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQIS--DLSPLKDLTKLEELSVN 93

Query: 437 GNNLE 441
            N L+
Sbjct: 94  RNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 375 DGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           +G     +  L L ++ +       +  L +L+ L + NN L       L  L  L VL+
Sbjct: 101 NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEVLD 156

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           L GN +  +     L R K  +  + + G  
Sbjct: 157 LHGNEITNTGG---LTRLKK-VNWIDLTGQK 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 377 NELPRII----SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRV 432
             L  +      L +S++ +    +  + + + L+ +D+ NNSL   +P+       L  
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEF 177

Query: 433 LNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           +    N LE  +P   L+     L ++  D N
Sbjct: 178 IAAGNNQLE-ELPE--LQNLPF-LTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 400 IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL 459
             S T LQ     +++LT  +P     +          +  E + P G  E+ +  +  L
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 460 SVDGNPKL 467
               + + 
Sbjct: 66  RDCLDRQA 73

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 24/104 (23%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG----------------SV 420
              P + SL  S + ++ E+     SL SL   + +  +L+                  +
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 421 PEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           PE      FL+++++  N+L+  +P          L  ++   N
Sbjct: 147 PEL-QNSSFLKIIDVDNNSLK-KLPDLP-----PSLEFIAAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +  P +  +   ++ +  E +  + +L  L A+   NNSL   +P+       L  +   
Sbjct: 170 DLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAG 223

Query: 437 GNNLEGSVPA-GLLERAKNGLLSLSVDGN 464
            N LE  +P    L      L ++  D N
Sbjct: 224 NNILE-ELPELQNLPF----LTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +    + S+   ++ +    +  + +L  L  +   NN L  ++P+    L  L V +  
Sbjct: 212 DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268

Query: 437 GNNLEGSVPAGL--LERAKNGLLSLS 460
             +L   +P  L  L+ ++N    LS
Sbjct: 269 LTDLP-ELPQSLTFLDVSENIFSGLS 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 368 QGLNCSY-DGNELPRIISLNLSSSGISGEIITYIFSL-TSLQALDLSNNSLTGSVPEFLS 425
           + LN       +LP +   +L+   +S  I + +  L  +L  L+ S+N +  S+ +   
Sbjct: 260 EALNVRDNYLTDLPELPQ-SLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPP 317

Query: 426 ELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
               L  LN++ N L   +PA         L  L    N
Sbjct: 318 S---LEELNVSNNKLI-ELPALP-----PRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 377 NELPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           +  P +  LN+S++ +       +      L+ L  S N L   VPE       L+ L++
Sbjct: 314 DLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHV 364

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
             N L    P          +  L ++ +
Sbjct: 365 EYNPLR-EFPDIP-----ESVEDLRMNSH 387

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
              + +L L+S+GI+  I    FS L SL+ LDLS N L+     +   L  L  LNL G
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 438 NNLEGSVPAGLLERAKNGLLSLSVDGNPKL 467
           N  +      L       L  L V      
Sbjct: 134 NPYKTLGETSLFSHLTK-LQILRVGNMDTF 162

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 377 NELPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           + L ++  L + +     +I    F  LT L+ L++  + L    P+ L  +  +  L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
                   +    ++   + +  L +    
Sbjct: 206 HMKQHI-LLLEIFVDVTSS-VECLELRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 38/128 (29%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTG------------------- 418
           +  +  L L        ++       +S++ L+L +  L                     
Sbjct: 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 419 ------------SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPK 466
                        V + L+++  L  L  + N L+ SVP G+ +R  + L  + +  NP 
Sbjct: 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS-LQKIWLHTNPW 313

Query: 467 LCHTASCN 474
            C   SC 
Sbjct: 314 DC---SCP 318

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 404 TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDG 463
            ++++LDLSNN +T      L     L+ L LT N +  ++         + L  L +  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS-LEHLDLSY 109

Query: 464 N 464
           N
Sbjct: 110 N 110

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT 436
           L  +  L + +S +          S+ ++  L L        + E F+     +  L L 
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 437 GNNLEGSVPAGLLERAKNGLLSL 459
             +L+    + L     N L+  
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKK 253

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ---------FQAEVQ---YI 584
            ++++G+G    V     +    + AVK++  +    +              EV     +
Sbjct: 21  PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV 80

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
             H N+  L    + +T   L+++ M KG L
Sbjct: 81  SGHPNIIQLKDTYETNTFFFLVFDLMKKGEL 111

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTT 592
             ++ IG G +        +    + AVK++  S          E++ +     H N+ T
Sbjct: 25  EVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDP----TEEIEILLRYGQHPNIIT 80

Query: 593 LVGYCDEDTNMGLIYEFMAKGNL 615
           L    D+   + ++ E M  G L
Sbjct: 81  LKDVYDDGKYVYVVTELMKGGEL 103

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 376 GNELPRIISLNLSSSGISGEIITYIFS---LTSLQALDLSNNSLTGS----VPEFLSELH 428
            +  P +  L +  +     ++        L  L+ +D+S   LT      + + + ++ 
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 429 FLRVLNLTGNNL 440
            L+ +N+  N L
Sbjct: 308 HLKFINMKYNYL 319

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLT 436
           L  +  L    + ++  +  +    L +L+ L++++N +    +PE+ S L  L  L+L+
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 437 GNNLEGSVPAGL---LERAKNGLLSLSVDGNP 465
            N ++ S+       L +     LSL +  NP
Sbjct: 158 SNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------YKQFQAEVQYI--VHH 587
           +  + +G G F  V     +  G Q A K +     +        +  + EV  +  + H
Sbjct: 14  DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQH 73

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNL------EEHLS 620
            N+ TL    +  T++ LI E +A G L      +E L+
Sbjct: 74  PNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLT 112

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQY--IVHHKNLTTL 593
             + +G+G +G V           VAVK++         +  + E+    +++H+N+   
Sbjct: 11  LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
            G+  E     L  E+ + G L + +     +   +A+
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQ 108

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 537 FEKV--IGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTT 592
           +E V  +G G FG VY    +  G   A K++   S +  + +  E++ +    H  +  
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80

Query: 593 LVGYCDEDTNMGLIYEFMAKGNL 615
           L+G    D  + ++ EF   G +
Sbjct: 81  LLGAYYHDGKLWIMIEFCPGGAV 103

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 532 KITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHH 587
           +  ++FE   V+G+G FG V       +    A+K +  +  +      +EV  +  ++H
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK-LSTILSEVMLLASLNH 61

Query: 588 KNLTTLVGYCDEDTNMGL----------IY---EFMAKGNLEEHLSGANTLTWEARLR 632
           + +        E  N             ++   E+   G L + +   N         
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW 119

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ--FQAEVQYI--VHHKNLTT 592
             + +GKG F  V        G + A  +++   +        + E +    + H N+  
Sbjct: 15  LFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVR 74

Query: 593 LVGYCDEDTNMGLIYEFMAKGNL 615
           L     E+ +  LI++ +  G L
Sbjct: 75  LHDSISEEGHHYLIFDLVTGGEL 97

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI- 584
           S  D  K    FEK IG+G  GTVY       G +VA++ ++       +    E+  + 
Sbjct: 14  SVGDPKKKYTRFEK-IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMR 72

Query: 585 -VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
              + N+   +        + ++ E++A G+L
Sbjct: 73  ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL 104

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 511 GGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS 570
           G       +  + + S   V KI+   + V+G G  GT+ +  + F+   VAVK +    
Sbjct: 2   GSSPSLEQDDGDEETSVVIVGKISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPEC 60

Query: 571 VQGYKQFQAEV---QYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEE 617
                +   EV   +    H N+        +     +  E  A   L+E
Sbjct: 61  FSFADR---EVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQE 106

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 27/119 (22%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTG------------------ 418
           ++  +  L++S + +S +      S   SL +L++S+N LT                   
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431

Query: 419 ---SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCN 474
              S+P+ + +L  L+ LN+  N L+ SVP G+ +R  + L  + +  NP  C   SC 
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS-LQKIWLHTNPWDC---SCP 485

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL 435
           +    +  L+LS +      I   F  ++ L+ L LS   L  S    ++ L+  +VL +
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 436 TGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            G           L+      L +    N
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTN 175

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT--GSVPEFLSELHFLRVLN 434
           +++   + L+ S++ ++  +      LT L+ L L  N L     + E  +++  L+ L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 435 LTGNNLEGSVPAGLLERAKNGLLSLSVDGN 464
           ++ N++      G     K+ LLSL++  N
Sbjct: 381 ISQNSVSYDEKKGDCSWTKS-LLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 370 LNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEF 423
           ++ S +G   +P+ +S     LN+S + IS    + I SL+ L+ L +S+N +       
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 424 LSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
                 L  L+L+ N L   +           L  L +  N 
Sbjct: 65  FKFNQELEYLDLSHNKLV-KISCHPTV----NLKHLDLSFNA 101

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
            N + SG     +     ++    LD SNN LT +V E    L  L  L L  N L+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 526 SYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI- 584
              D   + +++ K IG+G  G V     + +G QVAVKM+     Q  +    EV  + 
Sbjct: 39  DQGDPRLLLDSYVK-IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMR 97

Query: 585 -VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
              H N+  +         + ++ EF+  G L
Sbjct: 98  DYQHFNVVEMYKSYLVGEELWVLMEFLQGGAL 129

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 18/137 (13%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             LP++ SL L ++ I+   IT +  LT L  L L +N ++  +   L+ L  L+ L L+
Sbjct: 131 VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLS 186

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQN--------NKYIVPVAAS 488
            N++   + A  L   KN L  L +      C     N + N        N     V   
Sbjct: 187 KNHIS-DLRA--LAGLKN-LDVLELFSQE--CLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 489 VVSLSVLLTALAILWNL 505
           ++S         + W+L
Sbjct: 241 IISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +L ++ SL+L  +GIS   I  +  L  L++L L NN +T      LS L  L  L+L 
Sbjct: 109 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 437 GNNLE 441
            N + 
Sbjct: 165 DNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           NEL  I  +  ++S I    +  I  L ++  L L+ N LT    + L+ L  L  L L 
Sbjct: 43  NELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLT--DIKPLANLKNLGWLFLD 98

Query: 437 GNNLE 441
            N ++
Sbjct: 99  ENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           LP +  L L+ + ++   I  + +L +L  L L  N +   +   L +L  L+ L+L  N
Sbjct: 67  LPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN 122

Query: 439 NLE 441
            + 
Sbjct: 123 GIS 125

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 38/148 (25%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQY------------ 583
            V+G+           +  G    V +   +        KQ + EV              
Sbjct: 84  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQ 143

Query: 584 ------------IVHHKNLTTLVGYCDEDTNMGLIYEFM----AKGNLEE-------HLS 620
                       +V       ++    ++ +M ++  F      + NL+        H S
Sbjct: 144 AKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSS 203

Query: 621 GANTLTWEARLRIATEAAQGSHSAFDQG 648
              +L   ARL++  +  +   S    G
Sbjct: 204 THKSLVHHARLQLTLQVIRLLASLHHYG 231

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKM-----LSASSVQGYKQFQAEVQY---IVHH-KN 589
           K IG GG   V+    E      A+K          ++  Y+    E+ Y   +  H   
Sbjct: 34  KQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRN---EIAYLNKLQQHSDK 89

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
           +  L  Y   D  + ++ E     +L   L    ++  WE +
Sbjct: 90  IIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK 130

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLS-NNSLTGSVPEFLSELHFLRVLNLTGNNLEGS 443
           L L+ +GI  EI    F+ T L  L+LS NN+L     +         +L+++   +  S
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 444 VPAGLLERAKNGLLSLSVDGNPKL 467
           +P+  LE     L  L       L
Sbjct: 217 LPSYGLE----NLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLT 436
           LP++  + +  +     I    F  L +LQ L +SN  +   +P+          +L++ 
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQ 136

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGN 464
            N    ++            + L ++ N
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKN 164

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ---YIVHHKNLTTLV 594
           +K +G+G F        + +    AVK++S          Q E+        H N+  L 
Sbjct: 16  DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRME---ANTQKEITALKLCEGHPNIVKLH 72

Query: 595 GYCDEDTNMGLIYEFMAKGNL 615
               +  +  L+ E +  G L
Sbjct: 73  EVFHDQLHTFLVMELLNGGEL 93

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 4/66 (6%), Positives = 16/66 (24%), Gaps = 5/66 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQYI--VHHKNLT 591
             + +  G    V+           A+K+ +  +       ++          +  ++  
Sbjct: 66  LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPE 125

Query: 592 TLVGYC 597
                 
Sbjct: 126 EARDRR 131

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 526 SYSDVAKITNNFEKVIGKG--GFGTVYHGYLEFNGTQVAVKM--LSASSVQGYKQFQAEV 581
           S+             IGKG     TV     +  G  V V+   L A S +     Q E+
Sbjct: 19  SFLPEGGCYELLTV-IGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGEL 77

Query: 582 QYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG 613
                 +H N+         D  + ++  FMA G
Sbjct: 78  HVSKLFNHPNIVPYRATFIADNELWVVTSFMAYG 111

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--------YKQFQAEVQYI--V 585
              K +G G  G V   +      +VA+K++S                  + E++ +  +
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           +H  +  +  +  +  +  ++ E M  G L
Sbjct: 73  NHPCIIKIKNFF-DAEDYYIVLELMEGGEL 101

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--------YKQFQAEVQYI--V 585
              K +G G  G V   +      +VA++++S                  + E++ +  +
Sbjct: 138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL 197

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
           +H  +  +  +  +  +  ++ E M  G L
Sbjct: 198 NHPCIIKIKNFF-DAEDYYIVLELMEGGEL 226

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 18/140 (12%)

Query: 504 NLKRRKQGGRKKGSWELKNRKFSYSDVAKITNN---FEKVIGKGGFGTVYHGYLEFNGTQ 560
             +R+       G+ +      S ++   +        K IG GG   V+    E     
Sbjct: 24  KFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNE-KKQI 82

Query: 561 VAVKM-----LSASSVQGYKQFQAEVQY---IVHH-KNLTTLVGYCDEDTNMGLIYEFMA 611
            A+K          ++  Y+    E+ Y   +  H   +  L  Y   D  + ++ E   
Sbjct: 83  YAIKYVNLEEADNQTLDSYRN---EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-G 138

Query: 612 KGNLEEHLSGANTLT-WEAR 630
             +L   L    ++  WE +
Sbjct: 139 NIDLNSWLKKKKSIDPWERK 158

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ-FQAEVQYI--VHHKNLTTLVG 595
           + IGKG FG V+ G        VA+K++     +   +  Q E+  +       +T   G
Sbjct: 28  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG 87

Query: 596 YCDEDTNMGLIYEFMAKG 613
              +DT + +I E++  G
Sbjct: 88  SYLKDTKLWIIMEYLGGG 105

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKM-----LSASSVQGYKQFQAEVQY---IVHH-KN 589
           K IG GG   V+    E      A+K          ++  Y+    E+ Y   +  H   
Sbjct: 15  KQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRN---EIAYLNKLQQHSDK 70

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
           +  L  Y   D  + ++ E     +L   L    ++  WE +
Sbjct: 71  IIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK 111

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--GYKQFQAEVQY--IVHHKNLTT 592
             K IGKG F  V        G +VA+K++  + +     ++   EV+   I++H N+  
Sbjct: 19  LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVK 78

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
           L    + +  + LI E+ + G + ++L     +   EAR
Sbjct: 79  LFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEAR 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +L  I +L+   +G++   I  +  L +L  L+L +N +T      L  L  +  L L+
Sbjct: 38  ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT--DLAPLKNLTKITELELS 93

Query: 437 GNNLE 441
           GN L+
Sbjct: 94  GNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             L  +  L++ ++ +S   +T + +L+ L  L   +N ++      L+ L  L  ++L 
Sbjct: 148 AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLK 203

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            N +    P   L    N L  +++    
Sbjct: 204 NNQISDVSP---LANTSN-LFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L ++ +L    + IS   I+ + SL +L  + L NN ++      L+    L ++ LT  
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227

Query: 439 NL 440
            +
Sbjct: 228 TI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
            L +I  L LS + +    ++ I  L S++ LDL++  +T   P  L+ L  L+VL L  
Sbjct: 83  NLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 138

Query: 438 NNLE 441
           N + 
Sbjct: 139 NQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             L  +  L L  + I+   I+ +  LT+LQ L + N  ++      L+ L  L  L   
Sbjct: 126 AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKAD 181

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            N +    P   L      L+ + +  N 
Sbjct: 182 DNKISDISPLASLPN----LIEVHLKNNQ 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
            +L ++ SL+L  +GIS   I  +  L  L++L L NN +T      LS L  L  L+L 
Sbjct: 106 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 437 GNNLE 441
            N + 
Sbjct: 162 DNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           NEL  I  +  ++S I    +  I  L ++  L L+ N LT   P  L+ L  L  L L 
Sbjct: 40  NELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95

Query: 437 GNNLE 441
            N ++
Sbjct: 96  ENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
             LP++ SL L ++ I+   IT +  LT L  L L +N ++      L+ L  L+ L L+
Sbjct: 128 VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLS 183

Query: 437 GNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
            N++   + A  L   KN L  L +    
Sbjct: 184 KNHIS-DLRA--LAGLKN-LDVLELFSQE 208

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVG 595
           +++G G +G VY G     G   A+K++  +     ++ + E+       HH+N+ T  G
Sbjct: 30  ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYG 88

Query: 596 ------YCDEDTNMGLIYEFMAKG 613
                     D  + L+ EF   G
Sbjct: 89  AFIKKNPPGMDDQLWLVMEFCGAG 112

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 23/106 (21%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQA------EVQY------IV 585
             ++GKGGFGTV+ G+   +  QVA+K++  + V G+           EV          
Sbjct: 36  GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGG 95

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEF-----------MAKGNLEEHLS 620
            H  +  L+ + +      L+ E              KG L E  S
Sbjct: 96  GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPS 141

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 380 PRIISLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLTGSVPEFLSEL----HFL 430
           P +  L+LS + +    +  +          L+ L L   SL+ +  E L+ +       
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 431 RVLNLTGNNLEGSVPAGL---LERAKNGLLSLSVDGN 464
           + L ++ N++  +    L   L+ +   L +L ++  
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 519 ELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQ 578
           +LK   + Y +      +  + +G+G FG V+    +  G Q AVK +    ++ ++  +
Sbjct: 45  KLKPVDYEYREEVHWMTHQPR-VGRGSFGEVHRMKDKQTGFQCAVKKV---RLEVFRVEE 100

Query: 579 AEVQYIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
                 +    +  L G   E   + +  E +  G+L
Sbjct: 101 LVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL 137

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 524 KFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ-FQAEVQ 582
              +S         E  IG G    V   Y      +VA+K ++    Q        E+Q
Sbjct: 7   ALPWSINRDDYELQEV-IGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQ 65

Query: 583 YI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL 615
            +   HH N+ +          + L+ + ++ G++
Sbjct: 66  AMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSV 100

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI 584
           F   D  K+ ++  + IG G FG VY      N   VA+K +S S  Q  +++Q  ++ +
Sbjct: 47  FFKDDPEKLFSDLRE-IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEV 105

Query: 585 V-----HHKNLTTLVGYCDEDTNMGLIYEFMA 611
                  H N     G    +    L+ E+  
Sbjct: 106 RFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL 137

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSL--TGSVPEFLSELHFLRVLNL 435
              +  + L    ++ + +  I  S  + + L LS+     T  +    +    L+ L+L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 436 TGNNLEGSVPAGLLERAKN--GLLSLSVDG 463
             ++++      L         L+SL++  
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVG 595
            K IG G FG       +     VAVK +   +    +  Q E+     + H N+     
Sbjct: 25  VKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-ENVQREIINHRSLRHPNIVRFKE 83

Query: 596 YCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
                T++ +I E+ + G L E +  A   +  EAR
Sbjct: 84  VILTPTHLAIIMEYASGGELYERICNAGRFSEDEAR 119

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 5/52 (9%), Positives = 15/52 (28%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNL 590
            V+G+           +  G    V +   +        +   + ++  + L
Sbjct: 79  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL 130

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHH 587
              +G G FG V+    +    +V VK +    V            +   E+     V H
Sbjct: 29  MSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEH 88

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKG 613
            N+  ++   +      L+ E    G
Sbjct: 89  ANIIKVLDIFENQGFFQLVMEKHGSG 114

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 532 KITNNFEKV--IGKGGFGTVYHGYLEFNGTQVAVK--MLSASSVQGYKQFQAEVQ---YI 584
           + T  F ++  IG G FG+V+      +G   A+K      +     +    EV     +
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLS 620
             H ++        ED +M +  E+   G+L + +S
Sbjct: 68  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAIS 103

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 379 LPRIISLNLSS-SGISGEIITYIFSLTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLT 436
            P ++ L+LS    +  +     F L  LQ L LS    +       L E+  L+ L + 
Sbjct: 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

Query: 437 GNNLEGSVPAGLLERAKN 454
           G   +G++   L E   +
Sbjct: 281 GIVPDGTLQL-LKEALPH 297

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG 437
             R+  ++LS+S I    +  I S  + LQ L L    L+  +   L++   L  LNL+G
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 21/105 (20%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQA------EVQY--IVHHK 588
              ++G GGFG+VY G    +   VA+K +    +  + +         EV     V   
Sbjct: 47  VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG 106

Query: 589 --NLTTLVGYCDEDTNMGLIYEF-----------MAKGNLEEHLS 620
              +  L+ + +   +  LI E              +G L+E L+
Sbjct: 107 FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA 151

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQY--IVHHKNLTT 592
              +G G FG V  G  +  G +VAVK+L+   ++      + + E+Q   +  H ++  
Sbjct: 16  GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIK 75

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLT-WEAR 630
           L       T+  ++ E+++ G L +++     +   EAR
Sbjct: 76  LYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEAR 114

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 504 NLKRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAV 563
           +       G +      + +K++ +D  +++   ++V+G G  G V   +    G + A+
Sbjct: 3   HHHHHHSSGLEVLFQGPEPKKYAVTDDYQLS---KQVLGLGVNGKVLECFHRRTGQKCAL 59

Query: 564 KMLSASSVQGYKQFQAEVQYIVH---HKNLTTLVGYCDEDTNMG----LIYEFMAKGNL 615
           K+L  S      + + EV +        ++  ++   +   +      +I E M  G L
Sbjct: 60  KLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGEL 113

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ---YIVHHKNLTTL 593
             +V+G G  G V   + +    + A+KML         + + EV+         ++  +
Sbjct: 22  TSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRI 76

Query: 594 VG-YCDEDTNMGLIY---EFMAKGNL 615
           V  Y +       +    E +  G L
Sbjct: 77  VDVYENLYAGRKCLLIVMECLDGGEL 102

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 7/116 (6%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKML---SASSVQGYKQFQAEVQYI--VHHKNLTT 592
               G       +         QVA+  +           ++  +    +  +    +  
Sbjct: 36  LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 593 LVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG 648
           ++          ++ E++  G+L+E    +   +    +R     A  + +A   G
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADTS--PSPVGAIRAMQSLAAAADAAHRAG 149

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKM--LSASSVQGYKQFQAEVQYI--VHHK 588
             +   + IG+G FG         +G Q  +K   +S  S +  ++ + EV  +  + H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           N+       +E+ ++ ++ ++   G+L + +
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLS---ASSVQGYKQFQAEVQYI--VHHKNLTT 592
              +G GG  TVY         +VA+K +        +  K+F+ EV     + H+N   
Sbjct: 16  VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN--- 72

Query: 593 LVGYCDEDTNMGLIY---EFMAKGNLEEHLSGANTLTWEARLRIATEAAQG---SHSA 644
           +V   D D      Y   E++    L E++     L+ +  +    +   G   +H  
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM 130

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 22/119 (18%)

Query: 506 KRRKQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKM 565
           K++  G  K G + L                    +G G FG V  G  E  G +VAVK+
Sbjct: 6   KQKHDGRVKIGHYIL-----------------GDTLGVGTFGKVKVGKHELTGHKVAVKI 48

Query: 566 LSASSVQG---YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL 619
           L+   ++      + + E+Q   +  H ++  L       +++ ++ E+++ G L +++
Sbjct: 49  LNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYI 107

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLS 567
             IGKG +G V   Y E + T  A+K+LS
Sbjct: 19  DEIGKGSYGVVKLAYNENDNTYYAMKVLS 47

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 13/95 (13%)

Query: 384 SLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLT--GSVP--EFLSELHFLRVLN 434
           ++ +  +GI  E I ++          L+ LDL +N+ T  GS      L     LR L 
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 435 LTGNNL--EGSVP-AGLLERAKN-GLLSLSVDGNP 465
           L    L   G+        + +N GL +L +  N 
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 382 IISLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLTGSVPEFLSEL-----HFLR 431
           + SL+LS + +       +         S+ +L+LS NSL     + L ++       + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 432 VLNLTGNNL--EGSVP-AGLLERAKNGLLSLSVDGN 464
            LNL+GN L  + S      L      +  L +  N
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	678
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.96
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.96
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.96
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.95
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.95
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.95
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.95
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.95
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.94
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.94
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.94
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.94
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.93
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.93
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.91
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.9
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.9
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.9
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.89
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.88
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.88
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.88
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.88
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.87
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.87
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.87
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.87
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.87
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.87
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.86
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.86
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.86
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.86
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.86
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.86
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.86
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.86
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.86
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.86
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.86
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.86
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.86
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.86
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.86
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.86
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.86
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.86
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.86
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.86
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.86
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.86
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.86
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.85
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.85
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.85
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.85
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.85
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.85
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.85
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.85
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.85
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.85
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.85
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.85
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.85
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.85
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.85
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.85
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.85
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.85
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.85
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.85
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.85
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.85
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.84
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.84
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.84
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.84
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.84
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.84
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.84
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.84
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.84
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.84
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.84
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.84
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.84
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.84
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.84
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.84
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.84
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.84
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.84
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.84
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.84
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.84
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.84
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.84
3niz_A	311	Rhodanese family protein; structural genomics, str	99.83
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.83
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.83
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.83
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.83
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.83
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.83
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.83
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.83
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.83
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.83
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.83
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.83
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.83
3bhy_A	283	Death-associated protein kinase 3; death associate	99.83
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.83
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.83
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.83
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.83
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.83
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.83
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.83
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.83
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.83
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.83
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.83
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.83
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.83
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.83
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.83
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.83
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.83
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.83
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.83
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.83
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.83
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.83
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.83
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.83
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.83
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.83
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.83
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.83
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.83
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.83
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.83
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.83
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.83
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.82
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.82
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.82
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.82
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.82
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.82
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.82
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.82
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.82
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.82
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.82
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.82
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.82
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.82
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.82
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.82
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.82
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.82
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.82
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.82
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.82
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.82
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.82
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.82
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.82
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.82
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.82
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.82
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.82
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.82
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.82
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.82
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.82
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.81
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.81
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.81
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.81
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.81
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.81
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.81
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.81
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.81
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.81
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.81
3uqc_A	286	Probable conserved transmembrane protein; structur	99.81
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.81
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.81
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.81
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.81
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.81
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.81
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.8
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.8
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.8
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.8
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.8
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.8
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.8
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.8
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.8
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.8
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.8
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.8
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.8
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.8
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.79
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.79
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.79
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.79
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.79
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.79
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.79
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.79
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.79
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.79
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.79
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.78
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.78
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.78
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.78
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.78
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.78
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.78
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.77
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.77
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.77
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.77
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.77
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.77
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.77
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.77
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.77
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.76
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.76
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.76
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.75
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.74
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.74
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.74
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.73
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.73
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.73
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.71
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.67
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.4
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.38
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.3
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.77
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.75
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	98.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.64
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.58
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.47
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.44
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.2
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.1
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.02
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.02
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.98
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.71
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.69
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.58
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.44
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.42
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.42
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.35
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.31
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.13
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.02
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.9
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.69
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.1
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.8
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.38
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	93.72
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	93.14
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	92.7
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	92.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	91.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	90.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	90.31
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	90.01
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	88.96
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	88.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	88.26
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	88.16
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	87.92
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	83.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.96

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.96  E-value=5.3e-30  Score=269.15  Aligned_cols=149  Identities=21%  Similarity=0.357  Sum_probs=126.1

Q ss_pred             ccHhhHHHHHhhhhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEE
Q 038969          525 FSYSDVAKITNNFEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGY  596 (678)
Q Consensus       525 fs~~el~~~t~~f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~  596 (678)
                      .++.|+...+..|.+.||+|+||.||+|++.     .+++.||||+++... ....++|.+|+.+  .++|||||+++|+
T Consensus        18 ~~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~   97 (308)
T 4gt4_A           18 AKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGV   97 (308)
T ss_dssp             -CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CCcccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceE
Confidence            3344444445567789999999999999863     256799999997643 3446789999988  4999999999999


Q ss_pred             EEcCCeeEEEEecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCC
Q 038969          597 CDEDTNMGLIYEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSS  660 (678)
Q Consensus       597 ~~~~~~~~LV~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~  660 (678)
                      |.+.+..+||||||++|+|.++|..+                ..++|.++++|+.|||+||+ |||+   .+||||||||
T Consensus        98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~-yLH~---~~iiHRDLK~  173 (308)
T 4gt4_A           98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGME-YLSS---HHVVHKDLAT  173 (308)
T ss_dssp             ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSG
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHH-HHHh---CCCCCCCccc
Confidence            99999999999999999999999642                36999999999999999999 9999   8999999999


Q ss_pred             CC----CCCcEEEEeeCCccc
Q 038969          661 NP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       661 ~N----~~~~vkI~DFGlar~  677 (678)
                      +|    +++.+||+|||+||.
T Consensus       174 ~NILl~~~~~~Ki~DFGlar~  194 (308)
T 4gt4_A          174 RNVLVYDKLNVKISDLGLFRE  194 (308)
T ss_dssp             GGEEECGGGCEEECCSCCBCG
T ss_pred             cceEECCCCCEEECCccccee
Confidence            99    788999999999984

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.96  E-value=9.5e-30  Score=266.07  Aligned_cols=137  Identities=25%  Similarity=0.453  Sum_probs=122.0

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+|++.     .+++.||||+++..+....++|.+|+.++  ++|||||+++|+|.+++..+|||||
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey   96 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY   96 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEc
Confidence            4578999999999999874     25789999999887777788999999984  9999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEee
Q 038969          610 MAKGNLEEHLSGA-------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITF  672 (678)
Q Consensus       610 ~~~GsL~~~L~~~-------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DF  672 (678)
                      |++|+|.++|+..             ..++|.++++|+.|||+||+ |||+   ++||||||||+|    +++.+||+||
T Consensus        97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~-yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DF  172 (299)
T 4asz_A           97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMV-YLAS---QHFVHRDLATRNCLVGENLLVKIGDF  172 (299)
T ss_dssp             CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             CCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCccCHhhEEECCCCcEEECCc
Confidence            9999999999642             47999999999999999999 9999   899999999999    7889999999


Q ss_pred             CCccc
Q 038969          673 SIIKN  677 (678)
Q Consensus       673 Glar~  677 (678)
                      |+||.
T Consensus       173 Gla~~  177 (299)
T 4asz_A          173 GMSRD  177 (299)
T ss_dssp             SCHHH
T ss_pred             cccee
Confidence            99973

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.96  E-value=2.5e-29  Score=266.44  Aligned_cols=137  Identities=23%  Similarity=0.438  Sum_probs=121.0

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+|+++     .+++.||||+++..+....++|.+|+.++  ++|||||+++|+|.+.+..+|||||
T Consensus        45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey  124 (329)
T 4aoj_A           45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY  124 (329)
T ss_dssp             EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            3578999999999999874     25789999999887777788999999984  9999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          610 MAKGNLEEHLSGA---------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       610 ~~~GsL~~~L~~~---------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      |++|+|.++|+..               .+++|.++++|+.|||+||+ |||+   .+||||||||+|    +++.+||+
T Consensus       125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~-yLH~---~~iiHRDLKp~NILl~~~~~~Ki~  200 (329)
T 4aoj_A          125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMV-YLAG---LHFVHRDLATRNCLVGQGLVVKIG  200 (329)
T ss_dssp             CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEETTTEEEEC
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHH-HHhc---CCeecccccHhhEEECCCCcEEEc
Confidence            9999999999643               35999999999999999999 9999   899999999999    88999999


Q ss_pred             eeCCccc
Q 038969          671 TFSIIKN  677 (678)
Q Consensus       671 DFGlar~  677 (678)
                      |||+||.
T Consensus       201 DFGla~~  207 (329)
T 4aoj_A          201 DFGMSRD  207 (329)
T ss_dssp             CCC----
T ss_pred             cccccee
Confidence            9999984

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.95  E-value=3.3e-28  Score=254.78  Aligned_cols=132  Identities=27%  Similarity=0.451  Sum_probs=117.7

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.+.||+|+||.||+|++.   ..||||+++..  +....++|.+|+.++  ++|||||+++|+|.+ +..+||||||++
T Consensus        40 l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g  115 (307)
T 3omv_A           40 LSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG  115 (307)
T ss_dssp             EEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred             EeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCC
Confidence            4578999999999999864   36999999754  345567899999984  999999999999864 568999999999


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.++|+.. ..++|.++++|+.|||+||+ |||+   .+||||||||+|    +++.+||+|||+|+
T Consensus       116 GsL~~~l~~~~~~l~~~~~~~i~~qia~gL~-yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  180 (307)
T 3omv_A          116 SSLYKHLHVQETKFQMFQLIDIARQTAQGMD-YLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLAT  180 (307)
T ss_dssp             CBHHHHHHTSCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred             CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCccCHHHEEECCCCcEEEeeccCce
Confidence            9999999754 67999999999999999999 9999   899999999999    88899999999997

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.95  E-value=3.9e-28  Score=252.35  Aligned_cols=139  Identities=19%  Similarity=0.290  Sum_probs=121.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc----CCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE----DTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~----~~~~~LV~E  608 (678)
                      |++.||+|+||.||+|....++..||||.+...  .....+.|.+|+.++  ++|||||++++++..    ++..+||||
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE  109 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence            456899999999999999888999999999754  334567899999884  999999999999864    345899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ||++|+|.++|.....+++.++..|+.||++||+ |||+ ..++||||||||+|     +++.+||+|||+|+.
T Consensus       110 y~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-ylH~-~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          110 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQ-FLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT-SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             CCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH-CCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            9999999999987788999999999999999999 9998 22349999999999     368999999999973

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.95  E-value=1.3e-27  Score=254.04  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=117.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...+|+.||||++...  .....+.|.+|+.++  ++|||||++++++.+.+..|||||||++|
T Consensus        29 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg  108 (350)
T 4b9d_A           29 LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGG  108 (350)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCC
Confidence            47899999999999999888999999999764  334567899999884  99999999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.++|..+  ..+++.+++.|+.||+.||+ |||+   .+||||||||+|    +++.+||+|||+||.
T Consensus       109 ~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~-ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  174 (350)
T 4b9d_A          109 DLFKRINAQKGVLFQEDQILDWFVQICLALK-HVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARV  174 (350)
T ss_dssp             BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESC
T ss_pred             cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCCHHHEEECCCCCEEEccccccee
Confidence            999999643  56799999999999999999 9999   899999999999    788999999999984

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.95  E-value=1.1e-27  Score=251.40  Aligned_cols=135  Identities=24%  Similarity=0.378  Sum_probs=115.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC----eeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT----NMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~----~~~LV~Ey~  610 (678)
                      +++.||+|+||.||+|++  +|+.||||+++.... ....+++|+..  .++|||||+++|+|.+.+    .++||||||
T Consensus         7 L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~   83 (303)
T 3hmm_A            7 LQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH   83 (303)
T ss_dssp             EEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCC
Confidence            357899999999999987  689999999975432 22234455555  379999999999997653    579999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.++|+. ..++|.++++|+.|+|+||+ |||+.+     .++||||||||+|    +++++||+|||+|+
T Consensus        84 ~~gsL~~~l~~-~~l~~~~~~~i~~~ia~gl~-ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  156 (303)
T 3hmm_A           84 EHGSLFDYLNR-YTVTVEGMIKLALSTASGLA-HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             TTCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCcHHHHHHh-CCCCHHHHHHHHHHHHHHHH-HHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence            99999999986 57999999999999999999 999842     4589999999999    78999999999987

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.95  E-value=5.9e-28  Score=256.32  Aligned_cols=134  Identities=20%  Similarity=0.263  Sum_probs=123.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|+||.||+|+.+.+|+.||||++........+.+.+|+.++  ++|||||++++++.+.+..|||||||++|+|.
T Consensus        80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~  159 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  159 (346)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHH
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHH
Confidence            6799999999999999888999999999765545556788898884  99999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++.. ..+++.++..++.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       160 ~~l~~-~~l~e~~~~~~~~qi~~aL~-ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  219 (346)
T 4fih_A          160 DIVTH-TRMNEEQIAAVCLAVLQALS-VLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQ  219 (346)
T ss_dssp             HHHHH-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             HHHHc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccCCHHHEEECCCCCEEEecCcCcee
Confidence            99975 57999999999999999999 9999   899999999999    889999999999973

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.95  E-value=7.6e-28  Score=251.79  Aligned_cols=136  Identities=15%  Similarity=0.182  Sum_probs=124.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.+.||+|+||.||+|+.+.+|+.||||++....   ....+.+.+|+.++  ++|||||++++++.+.+..|||||||+
T Consensus        36 i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~  115 (311)
T 4aw0_A           36 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK  115 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCC
Confidence            3479999999999999998899999999997542   23456788999884  899999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.++|.....+++.++..++.||+.||+ |||+   .+||||||||+|    +++.+||+|||+|+
T Consensus       116 gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~-ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~  180 (311)
T 4aw0_A          116 NGELLKYIRKIGSFDETCTRFYTAEIVSALE-YLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAK  180 (311)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence            9999999987778999999999999999999 9999   899999999999    88999999999997

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.94  E-value=2.7e-27  Score=257.36  Aligned_cols=134  Identities=20%  Similarity=0.263  Sum_probs=123.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|+||.||+|+.+.+|+.||||++........+.+.+|+.++  ++|||||++++++.+.+..|||||||++|+|.
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~  236 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  236 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHH
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHH
Confidence            6899999999999999888999999999876555556788998884  99999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          617 EHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +++.. ..+++.++..|+.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       237 ~~i~~-~~l~e~~~~~~~~qil~aL~-ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~  296 (423)
T 4fie_A          237 DIVTH-TRMNEEQIAAVCLAVLQALS-VLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQ  296 (423)
T ss_dssp             HHHHH-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEE
T ss_pred             HHHhc-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeecccCCHHHEEEcCCCCEEEecCccceE
Confidence            99975 56999999999999999999 9999   899999999999    889999999999974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.94  E-value=2.6e-27  Score=250.56  Aligned_cols=131  Identities=18%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .++||+|+||.||+|+.+.+|+.||||+++....     +.+|+.+  .++|||||++++++.+++..+||||||++|+|
T Consensus        63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L  137 (336)
T 4g3f_A           63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL  137 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred             CcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcH
Confidence            3679999999999999988899999999976432     2357776  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-cEEEEeeCCccc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-IVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-~vkI~DFGlar~  677 (678)
                      .++|+....+++.+++.|+.||++||+ |||+   .+||||||||+|    .++ ++||+|||+|+.
T Consensus       138 ~~~l~~~~~l~e~~~~~~~~qi~~aL~-ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~  200 (336)
T 4g3f_A          138 GQLIKQMGCLPEDRALYYLGQALEGLE-YLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALC  200 (336)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEE
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeE
Confidence            999987778999999999999999999 9999   899999999999    454 699999999973

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.94  E-value=6.9e-27  Score=240.96  Aligned_cols=135  Identities=16%  Similarity=0.293  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||+++...   ....+.+.+|+.+  .++|||||++++++.+.+..+|||||| +
T Consensus        18 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~   96 (275)
T 3hyh_A           18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-G   96 (275)
T ss_dssp             EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-C
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-C
Confidence            478999999999999998789999999997542   2335678899988  499999999999999999999999999 6


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+||||||||+|    +++++||+|||+|+.
T Consensus        97 g~L~~~l~~~~~l~e~~~~~~~~qi~~al~-ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  161 (275)
T 3hyh_A           97 NELFDYIVQRDKMSEQEARRFFQQIISAVE-YCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNI  161 (275)
T ss_dssp             EEHHHHHHHSCSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC--
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccCChHHeEECCCCCEEEeecCCCee
Confidence            899999987788999999999999999999 9999   899999999999    788999999999973

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.94  E-value=1.4e-26  Score=242.20  Aligned_cols=136  Identities=16%  Similarity=0.283  Sum_probs=115.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC------------e
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT------------N  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~------------~  602 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++... ....+.+.+|+.++  ++|||||++++++.+.+            .
T Consensus        10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~   89 (299)
T 4g31_A           10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVY   89 (299)
T ss_dssp             EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEE
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcE
Confidence            378999999999999998889999999997643 33456789999884  89999999999986543            3


Q ss_pred             eEEEEecCCCCCHHHhhcCCC---CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          603 MGLIYEFMAKGNLEEHLSGAN---TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~~---~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      .+||||||++|+|.+++....   ..++..++.|+.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|
T Consensus        90 l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~-ylH~---~~IiHRDlKp~NILl~~~~~vKl~DFGla  165 (299)
T 4g31_A           90 LYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVE-FLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLV  165 (299)
T ss_dssp             EEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECCCCCC
T ss_pred             EEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH-HHHH---CcCccccCcHHHeEECCCCcEEEccCccc
Confidence            789999999999999998753   4567788999999999999 9999   899999999999    7889999999999


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      +.
T Consensus       166 ~~  167 (299)
T 4g31_A          166 TA  167 (299)
T ss_dssp             --
T ss_pred             ee
Confidence            74

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.93  E-value=7.6e-27  Score=249.51  Aligned_cols=137  Identities=26%  Similarity=0.408  Sum_probs=118.2

Q ss_pred             hhhhcccCCceEEEEEEEccC-----CEEEEEEEeccCch-hhHHHHHHHHHHh--c-CCCCcccEEEEEEc-CCeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN-----GTQVAVKMLSASSV-QGYKQFQAEVQYI--V-HHKNLTTLVGYCDE-DTNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~-----g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~-~~~~~LV  606 (678)
                      +.+.||+|+||.||+|.....     ++.||||+++.... ...++|.+|+.++  + ||||||+++|+|.+ ++..+||
T Consensus        68 l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV  147 (353)
T 4ase_A           68 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  147 (353)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             EeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEE
Confidence            457899999999999987532     36899999987543 4467899999873  4 56999999999966 4578999


Q ss_pred             EecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      ||||++|+|.++|+..                ..++|.+++.|+.|||+||+ |||+   .+||||||||+|    +++.
T Consensus       148 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~-yLH~---~~iiHRDLK~~NILl~~~~~  223 (353)
T 4ase_A          148 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGME-FLAS---RKCIHRDLAARNILLSEKNV  223 (353)
T ss_dssp             EECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred             EEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHH-hHhh---CCeecCccCccceeeCCCCC
Confidence            9999999999999642                35899999999999999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCccc
Q 038969          667 VKLITFSIIKN  677 (678)
Q Consensus       667 vkI~DFGlar~  677 (678)
                      +||+|||+||.
T Consensus       224 vKi~DFGlar~  234 (353)
T 4ase_A          224 VKICDFGLARD  234 (353)
T ss_dssp             EEECCCGGGSC
T ss_pred             EEECcchhhhh
Confidence            99999999984

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.93  E-value=3.6e-27  Score=246.42  Aligned_cols=137  Identities=23%  Similarity=0.231  Sum_probs=116.8

Q ss_pred             hhhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+|+..   ..++.||||+++...  .....++.+|+.+  .++|||||++++++.+.+..+|||||
T Consensus        28 i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy  107 (304)
T 3ubd_A           28 LLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDF  107 (304)
T ss_dssp             EEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECC
T ss_pred             EEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEc
Confidence            3478999999999999873   246799999997542  2233467888877  38999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |++|+|.++|.....+++.++..++.|++.||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus       108 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~-ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A          108 LRGGDLFTRLSKEVMFTEEDVKFYLAELALALD-HLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             CTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            999999999987788999999999999999999 9999   899999999999    888999999999974

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.91  E-value=1e-24  Score=236.82  Aligned_cols=135  Identities=17%  Similarity=0.288  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc------CCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE------DTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~------~~~~~LV~  607 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++..  .....+.+.+|+.++  ++|||||++++++..      .+..||||
T Consensus        59 ~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivm  138 (398)
T 4b99_A           59 IETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVL  138 (398)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEE
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEE
Confidence            47899999999999999888999999999754  234456788899884  999999999998753      36789999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |||+ |+|.+++.....+++.++..++.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       139 E~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~-ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~  207 (398)
T 4b99_A          139 DLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLK-YMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARG  207 (398)
T ss_dssp             ECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred             eCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CcCcCCCcCccccccCCCCCEEEeecceeee
Confidence            9996 789999998889999999999999999999 9999   899999999999    888999999999973

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.90  E-value=4.2e-24  Score=242.95  Aligned_cols=136  Identities=22%  Similarity=0.380  Sum_probs=124.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+.+.+|+.||||++........+.+.+|+.++  ++|||||++++++.+.+..+||||||++|+|
T Consensus       162 ~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L  241 (573)
T 3uto_A          162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL  241 (573)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcH
Confidence            47899999999999999889999999999877666667888998884  9999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      .++|..+ ..+++.++..++.||++||+ |||+   .+|+||||||+|      ..+.+||+|||+|+.
T Consensus       242 ~~~i~~~~~~l~e~~~~~~~~qi~~al~-ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~  306 (573)
T 3uto_A          242 FEKVADEHNKMSEDEAVEYMRQVCKGLC-HMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH  306 (573)
T ss_dssp             HHHHTCTTSCEEHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence            9999754 67999999999999999999 9999   899999999999      347899999999974

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.90  E-value=4.6e-24  Score=242.52  Aligned_cols=136  Identities=19%  Similarity=0.271  Sum_probs=119.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHH---HHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAE---VQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~E---v~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .++||+|+||.||+|+.+.+|+.||||+++....   .....+.+|   +.++  ++|||||++++++.+.+..||||||
T Consensus       194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy  273 (689)
T 3v5w_A          194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDL  273 (689)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEec
Confidence            4799999999999999988899999999975321   122223333   3332  6899999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+||+|.++|.....+++..+..++.||+.||+ |||+   .+||||||||+|    .++++||+|||+|+.
T Consensus       274 ~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~-yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA~~  341 (689)
T 3v5w_A          274 MNGGDLHYHLSQHGVFSEADMRFYAAEIILGLE-HMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACD  341 (689)
T ss_dssp             CCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCchHHeEEeCCCCEEecccceeee
Confidence            999999999987788999999999999999999 9999   899999999999    889999999999974

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.90  E-value=8.4e-24  Score=227.03  Aligned_cols=130  Identities=16%  Similarity=0.246  Sum_probs=114.5

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccCchhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.+.   .++.||||.+....  ...++.+|++++   .+|||||++++++.+.+..+||||||+
T Consensus        26 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~  103 (361)
T 4f9c_A           26 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLE  103 (361)
T ss_dssp             EEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCC
T ss_pred             EEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCC
Confidence            4789999999999998742   46789999987643  234577787763   479999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++.   .+++.++..++.|+++||+ |||+   .+||||||||+|     +.+.+||+|||+|+
T Consensus       104 g~~L~~~~~---~l~~~~~~~~~~qll~al~-ylH~---~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~  166 (361)
T 4f9c_A          104 HESFLDILN---SLSFQEVREYMLNLFKALK-RIHQ---FGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ  166 (361)
T ss_dssp             CCCHHHHHT---TCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             cccHHHHHc---CCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence            999999995   4999999999999999999 9999   899999999999     34799999999997

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.89  E-value=1.9e-23  Score=230.09  Aligned_cols=146  Identities=23%  Similarity=0.260  Sum_probs=125.0

Q ss_pred             hhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcC
Q 038969          528 SDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDED  600 (678)
Q Consensus       528 ~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~  600 (678)
                      .++...+++|.  ++||+|+||.||+|+.+.+++.||||+++....   .....+.+|+.+  .++||||++++++|.+.
T Consensus        67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~  146 (437)
T 4aw2_A           67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD  146 (437)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred             hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence            33333444554  789999999999999987899999999975322   122336777766  48999999999999999


Q ss_pred             CeeEEEEecCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          601 TNMGLIYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +..+||||||++|+|.++|.. ...+++..+..++.|++.||+ |||+   .+||||||||+|    .++.+||+|||+|
T Consensus       147 ~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~-~LH~---~giiHrDLKp~NILl~~~g~vkL~DFGla  222 (437)
T 4aw2_A          147 NNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAID-SVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSC  222 (437)
T ss_dssp             SEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence            999999999999999999987 478999999999999999999 9999   899999999999    7899999999998


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      +.
T Consensus       223 ~~  224 (437)
T 4aw2_A          223 LK  224 (437)
T ss_dssp             EE
T ss_pred             hh
Confidence            63

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.88  E-value=1.5e-22  Score=213.97  Aligned_cols=151  Identities=20%  Similarity=0.201  Sum_probs=133.1

Q ss_pred             cCccccHhhHHHHHhhh------------hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC
Q 038969          521 KNRKFSYSDVAKITNNF------------EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH  586 (678)
Q Consensus       521 ~~~~fs~~el~~~t~~f------------~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~  586 (678)
                      ....++++++..+++..            .+.||+|+||.||+|+...+|+.||||++........+.+.+|+..+  ++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  100 (321)
T 2c30_A           21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ  100 (321)
T ss_dssp             ----CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCC
T ss_pred             cCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCC
Confidence            34568888888887642            25899999999999999878999999999876666677888998884  89


Q ss_pred             CCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----
Q 038969          587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----  662 (678)
Q Consensus       587 H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----  662 (678)
                      |+||+++++++...+..++||||+++|+|.+++.. ..+++.++..++.|+++||+ |||+   .+|+||||||+|    
T Consensus       101 h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~l~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~  175 (321)
T 2c30_A          101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ-VRLNEEQIATVCEAVLQALA-YLHA---QGVIHRDIKSDSILLT  175 (321)
T ss_dssp             CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEC
T ss_pred             CCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEC
Confidence            99999999999999999999999999999999875 57999999999999999999 9999   899999999999    


Q ss_pred             CCCcEEEEeeCCcc
Q 038969          663 HKNIVKLITFSIIK  676 (678)
Q Consensus       663 ~~~~vkI~DFGlar  676 (678)
                      .++.+||+|||+++
T Consensus       176 ~~~~~kl~Dfg~~~  189 (321)
T 2c30_A          176 LDGRVKLSDFGFCA  189 (321)
T ss_dssp             TTCCEEECCCTTCE
T ss_pred             CCCcEEEeeeeeee
Confidence            78899999999986

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=211.56  Aligned_cols=135  Identities=21%  Similarity=0.379  Sum_probs=125.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+++.||+|.+........+.|.+|+..+  ++||||+++++++.+.+..++||||+++|+|
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L   94 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTL   94 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcH
Confidence            47899999999999999878999999999777667778899999884  8999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        95 ~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  156 (310)
T 3s95_A           95 RGIIKSMDSQYPWSQRVSFAKDIASGMA-YLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLAR  156 (310)
T ss_dssp             HHHHHHCCTTSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCE
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCCcCeEEECCCCCEEEeecccce
Confidence            999986 477999999999999999999 9999   899999999999    78899999999986

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.88  E-value=6.8e-23  Score=216.10  Aligned_cols=147  Identities=38%  Similarity=0.690  Sum_probs=128.6

Q ss_pred             ccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcC
Q 038969          525 FSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDED  600 (678)
Q Consensus       525 fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~  600 (678)
                      +++.++..++++|.  +.||+|+||.||+|+.. +|+.||||.+........++|.+|+..+  ++||||+++++++...
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            34444444555553  68999999999999976 7899999999877666678899999884  8999999999999999


Q ss_pred             CeeEEEEecCCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEee
Q 038969          601 TNMGLIYEFMAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITF  672 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DF  672 (678)
                      +..++||||+++|+|.+++...    ..++|.++++++.|+++||+ |||+   .+|+||||||+|    .++.+||+||
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH-YLHT---RAIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCSTTEEECTTCCEEECCC
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHH-HhcC---CCeecCCCCHHHEEECCCCCEEEeec
Confidence            9999999999999999999754    35999999999999999999 9999   899999999999    7889999999


Q ss_pred             CCcc
Q 038969          673 SIIK  676 (678)
Q Consensus       673 Glar  676 (678)
                      |+++
T Consensus       184 g~~~  187 (321)
T 2qkw_B          184 GISK  187 (321)
T ss_dssp             TTCE
T ss_pred             cccc
Confidence            9986

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.88  E-value=2.5e-22  Score=213.07  Aligned_cols=136  Identities=19%  Similarity=0.295  Sum_probs=123.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+.+.+|+.+  .++||||+++++++...+..++||||+++|
T Consensus        20 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~   99 (328)
T 3fe3_A           20 LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGG   99 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCC
Confidence            47899999999999999778999999999754  33455678889887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       100 ~L~~~l~~~~~l~~~~~~~~~~qi~~al~-~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A          100 EVFDYLVAHGRMKEKEARSKFRQIVSAVQ-YCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSNE  163 (328)
T ss_dssp             BHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCGG
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCcee
Confidence            99999987678999999999999999999 9999   899999999999    788999999999863

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.87  E-value=1.2e-22  Score=214.51  Aligned_cols=153  Identities=35%  Similarity=0.597  Sum_probs=132.5

Q ss_pred             CccccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchh-hHHHHHHHHHH--hcCCCCcccEEEE
Q 038969          522 NRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ-GYKQFQAEVQY--IVHHKNLTTLVGY  596 (678)
Q Consensus       522 ~~~fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~-~~~~f~~Ev~~--~l~H~NIv~l~g~  596 (678)
                      .+.|++.++....++|.  +.||+|+||.||+|+.. +|+.||||++...... ....|.+|+..  .++||||++++++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence            45688899998888875  78999999999999865 7899999999765322 23468888887  3899999999999


Q ss_pred             EEcCCeeEEEEecCCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEE
Q 038969          597 CDEDTNMGLIYEFMAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVK  668 (678)
Q Consensus       597 ~~~~~~~~LV~Ey~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vk  668 (678)
                      +...+..++||||+++|+|.+++...    ..++|..++.|+.|+++||+ |||+.+.++|+||||||+|    +++.+|
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k  174 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA-YLHDHCDPKIIHRDVKAANILLDEEFEAV  174 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHH-HHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred             EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence            99999999999999999999999864    35999999999999999999 9999544599999999999    778999


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+|+
T Consensus       175 l~Dfg~~~  182 (326)
T 3uim_A          175 VGDFGLAK  182 (326)
T ss_dssp             ECCCSSCE
T ss_pred             eccCcccc
Confidence            99999986

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.87  E-value=2.9e-22  Score=213.32  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=122.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++.+.+|+.||+|+++...   ......+.+|+.++  ++||||+++++++...+..++||||+++
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~g   89 (337)
T 1o6l_A           10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   89 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            478999999999999998789999999997542   23456677887773  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        90 g~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~  154 (337)
T 1o6l_A           90 GELFFHLSRERVFTEERARFYGAEIVSALE-YLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             CBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCcCCHHHEEECCCCCEEEeeccchhh
Confidence            999999987678999999999999999999 9999   899999999999    788999999999874

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.87  E-value=4.2e-22  Score=207.99  Aligned_cols=134  Identities=17%  Similarity=0.235  Sum_probs=122.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+|+.||||.+........+.+.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (297)
T 3fxz_A           25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (297)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCH
Confidence            3689999999999999877899999999976655556778888877  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       105 ~~~~~~-~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  164 (297)
T 3fxz_A          105 TDVVTE-TCMDEGQIAAVCRECLQALE-FLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (297)
T ss_dssp             HHHHHH-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHhh-cCCCHHHHHHHHHHHHHHHH-HHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCce
Confidence            999976 46999999999999999999 9999   899999999999    78899999999986

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=213.60  Aligned_cols=136  Identities=22%  Similarity=0.265  Sum_probs=121.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .++||+|+||.||+|+.+.+|+.||||+++...   ....+.+.+|..++  + +||||+++++++...+..+|||||++
T Consensus        28 ~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~  107 (353)
T 3txo_A           28 IRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVN  107 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCC
Confidence            478999999999999998789999999997642   23345566776663  4 79999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus       108 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~a~~  173 (353)
T 3txo_A          108 GGDLMFHIQKSRRFDEARARFYAAEIISALM-FLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE  173 (353)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCcccCCCHHHEEECCCCCEEEccccceee
Confidence            9999999987778999999999999999999 9999   899999999999    888999999999874

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.87  E-value=5.7e-22  Score=209.77  Aligned_cols=136  Identities=21%  Similarity=0.331  Sum_probs=121.4

Q ss_pred             hhhcccCCceEEEEEEEccC---CEEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....+   +..||||+++.. .....++|.+|+.++  ++||||+++++++.+.+..++||||++
T Consensus        54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  133 (325)
T 3kul_A           54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYME  133 (325)
T ss_dssp             EEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCT
T ss_pred             eeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCC
Confidence            37899999999999998633   456999999865 344567899999884  899999999999999999999999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.++++.. ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       134 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          134 NGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMR-YLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             TCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             CCcHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCeeCCCCCcceEEECCCCCEEECCCCcccc
Confidence            99999999754 67999999999999999999 9999   899999999999    788999999999873

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.86  E-value=1e-21  Score=205.35  Aligned_cols=150  Identities=33%  Similarity=0.615  Sum_probs=132.8

Q ss_pred             cCccccHhhHHHHHhhhh--------hhcccCCceEEEEEEEccCCEEEEEEEeccC----chhhHHHHHHHHHH--hcC
Q 038969          521 KNRKFSYSDVAKITNNFE--------KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS----SVQGYKQFQAEVQY--IVH  586 (678)
Q Consensus       521 ~~~~fs~~el~~~t~~f~--------~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~----~~~~~~~f~~Ev~~--~l~  586 (678)
                      ....|++.++.+++++|.        +.||+|+||.||+|..  +++.||||.+...    .....+.|.+|+..  .++
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~   88 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ   88 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence            346789999999999986        4599999999999985  6889999998653    22345678888887  489


Q ss_pred             CCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-
Q 038969          587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-  662 (678)
Q Consensus       587 H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-  662 (678)
                      ||||+++++++...+..++||||+++|+|.+++...   ..+++..++.++.|+++||+ |||+   .+|+||||||+| 
T Consensus        89 h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dlkp~Ni  164 (307)
T 2nru_A           89 HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIN-FLHE---NHHIHRDIKSANI  164 (307)
T ss_dssp             CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGE
T ss_pred             CCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHhc---CCeecCCCCHHHE
Confidence            999999999999999999999999999999999742   56999999999999999999 9999   899999999999 


Q ss_pred             ---CCCcEEEEeeCCcc
Q 038969          663 ---HKNIVKLITFSIIK  676 (678)
Q Consensus       663 ---~~~~vkI~DFGlar  676 (678)
                         +++.+||+|||+++
T Consensus       165 li~~~~~~kl~Dfg~~~  181 (307)
T 2nru_A          165 LLDEAFTAKISDFGLAR  181 (307)
T ss_dssp             EECTTCCEEECCCTTCE
T ss_pred             EEcCCCcEEEeeccccc
Confidence               77899999999986

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.86  E-value=8.4e-22  Score=205.33  Aligned_cols=135  Identities=21%  Similarity=0.350  Sum_probs=122.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+++.||+|.+...   .....+.|.+|+..+  ++||||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g   95 (294)
T 4eqm_A           16 VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEG   95 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCC
Confidence            47899999999999999878999999998543   234456788998883  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        96 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  159 (294)
T 4eqm_A           96 PTLSEYIESHGPLSVDTAINFTNQILDGIK-HAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAK  159 (294)
T ss_dssp             CBHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSST
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCcc
Confidence            999999987678999999999999999999 9999   899999999999    78899999999986

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.86  E-value=6.2e-22  Score=211.46  Aligned_cols=136  Identities=19%  Similarity=0.280  Sum_probs=120.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++...   ....+.+..|..++   .+||||+++++++.+.+..++||||++
T Consensus        22 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~  101 (345)
T 1xjd_A           22 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLN  101 (345)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCC
Confidence            478999999999999998789999999997642   22345566666652   599999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       102 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~  167 (345)
T 1xjd_A          102 GGDLMYHIQSCHKFDLSRATFYAAEIILGLQ-FLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKE  167 (345)
T ss_dssp             TCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence            9999999987678999999999999999999 9999   899999999999    788999999999874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.86  E-value=5.4e-22  Score=215.68  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=120.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .++||+|+||.||+++.+.+++.||||+++....   ...+.+..|..++   .+||||+++++++...+..+|||||++
T Consensus        57 ~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~  136 (396)
T 4dc2_A           57 LRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN  136 (396)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCC
Confidence            4789999999999999988899999999976422   2233466666652   589999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus       137 gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla~~  202 (396)
T 4dc2_A          137 GGDLMFHMQRQRKLPEEHARFYSAEISLALN-YLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  202 (396)
T ss_dssp             TCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEeccCCHHHEEECCCCCEEEeecceeee
Confidence            9999999987778999999999999999999 9999   899999999999    888999999999974

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.86  E-value=2.3e-22  Score=217.35  Aligned_cols=136  Identities=24%  Similarity=0.418  Sum_probs=122.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||||.++... ....++|.+|+.++  ++||||++++++|...+..++|||||++|+
T Consensus       119 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~  198 (377)
T 3cbl_A          119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD  198 (377)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred             eeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCC
Confidence            478999999999999998789999999997653 33445788888884  899999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.++++.. ..+++.+++.++.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       199 L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          199 FLTFLRTEGARLRVKTLLQMVGDAAAGME-YLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             HHHHHHHHGGGCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCcee
Confidence            99999754 46999999999999999999 9999   899999999999    788999999999873

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.86  E-value=1.1e-21  Score=209.68  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=121.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+++.+.+++.||||++...   .....+.+.+|+.++   .+||||+++++++...+..++||||++
T Consensus        14 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~   93 (345)
T 3a8x_A           14 LRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   93 (345)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCC
Confidence            47899999999999999878999999999764   233445677777763   489999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus        94 gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~  159 (345)
T 3a8x_A           94 GGDLMFHMQRQRKLPEEHARFYSAEISLALN-YLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  159 (345)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGCBC
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCHHHEEECCCCCEEEEecccccc
Confidence            9999999987678999999999999999999 9999   899999999999    788999999999874

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=219.74  Aligned_cols=146  Identities=18%  Similarity=0.216  Sum_probs=124.2

Q ss_pred             hhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcC
Q 038969          528 SDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDED  600 (678)
Q Consensus       528 ~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~  600 (678)
                      +++....++|.  ++||+|+||.||+++.+.+|+.||||+++....   ...+.+.+|..+  .++|+||+++++++.+.
T Consensus        54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~  133 (412)
T 2vd5_A           54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDE  133 (412)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred             hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC
Confidence            33333344453  789999999999999987899999999975322   222346677766  48999999999999999


Q ss_pred             CeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          601 TNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +..+||||||++|+|.+++... ..+++..+..++.|++.||+ |||+   .+||||||||+|    .++++||+|||+|
T Consensus       134 ~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~giiHrDLKp~NILld~~g~vkL~DFGla  209 (412)
T 2vd5_A          134 NYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAID-SVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSC  209 (412)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecccCHHHeeecCCCCEEEeechhh
Confidence            9999999999999999999753 57999999999999999999 9999   899999999999    7899999999998


Q ss_pred             cc
Q 038969          676 KN  677 (678)
Q Consensus       676 r~  677 (678)
                      +.
T Consensus       210 ~~  211 (412)
T 2vd5_A          210 LK  211 (412)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.86  E-value=1.2e-21  Score=210.62  Aligned_cols=136  Identities=23%  Similarity=0.337  Sum_probs=122.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh------hHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ------GYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~------~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+|+.||||.+......      ..+.+.+|+.++  ++||||+++++++...+..++||||
T Consensus        17 ~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~   96 (361)
T 2yab_A           17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILEL   96 (361)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEc
Confidence            47899999999999999878999999999764321      356788998884  8999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC----cEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN----IVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~----~vkI~DFGlar~  677 (678)
                      +++|+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +.+    .+||+|||+|+.
T Consensus        97 ~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           97 VSGGELFDFLAQKESLSEEEATSFIKQILDGVN-YLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             CCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            999999999988788999999999999999999 9999   899999999999    333    799999999863

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.86  E-value=1.2e-21  Score=206.44  Aligned_cols=136  Identities=15%  Similarity=0.269  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC-------------
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT-------------  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~-------------  601 (678)
                      .+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+.++  ++||||+++++++.+..             
T Consensus        11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~   90 (332)
T 3qd2_B           11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL   90 (332)
T ss_dssp             EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred             eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence            478999999999999998789999999997543 33457789999884  89999999999986543             


Q ss_pred             --------------------------------------------eeEEEEecCCCCCHHHhhcCC---CCCCHHHHHHHH
Q 038969          602 --------------------------------------------NMGLIYEFMAKGNLEEHLSGA---NTLTWEARLRIA  634 (678)
Q Consensus       602 --------------------------------------------~~~LV~Ey~~~GsL~~~L~~~---~~l~~~~~l~ia  634 (678)
                                                                  ..++||||+++|+|.+++...   ...++..++.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~  170 (332)
T 3qd2_B           91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIF  170 (332)
T ss_dssp             -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHH
Confidence                                                        379999999999999999865   346778899999


Q ss_pred             HHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          635 TEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       635 ~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       171 ~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          171 IQIAEAVE-FLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTA  213 (332)
T ss_dssp             HHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             HHHHHHHH-HHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccc
Confidence            99999999 9999   899999999999    788999999999863

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.86  E-value=5e-22  Score=214.47  Aligned_cols=135  Identities=21%  Similarity=0.355  Sum_probs=117.1

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+..   ..+..||||.++.. .....++|.+|+.++  ++||||+++++++.+.+..+|||||++
T Consensus        50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  129 (373)
T 2qol_A           50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYME  129 (373)
T ss_dssp             CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCC
Confidence            478999999999999875   35678999999765 334567899999884  899999999999999999999999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.++++.. ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       130 ~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  195 (373)
T 2qol_A          130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMK-YLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGR  195 (373)
T ss_dssp             TCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             CCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence            99999999865 57999999999999999999 9999   899999999999    78899999999987

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.86  E-value=7.3e-22  Score=213.23  Aligned_cols=135  Identities=19%  Similarity=0.340  Sum_probs=118.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      +.||+|+||.||+|....+|+.||+|+++.......++|.+|+.++  ++||||+++++++...+..+|||||+++|+|.
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~  174 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELF  174 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEH
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHH
Confidence            5799999999999999878999999999887666677899999884  89999999999999999999999999999999


Q ss_pred             HhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          617 EHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       617 ~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      +++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|      ..+.+||+|||+|+.
T Consensus       175 ~~l~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~  238 (373)
T 2x4f_A          175 DRIIDESYNLTELDTILFMKQICEGIR-HMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARR  238 (373)
T ss_dssp             HHHHHTGGGCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEE
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCcee
Confidence            998654 56999999999999999999 9999   899999999999      456899999999873

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.86  E-value=8.5e-22  Score=208.01  Aligned_cols=136  Identities=18%  Similarity=0.238  Sum_probs=122.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+|+.||+|+++...   ....+.+.+|+.+  .++||||+++++++.+.+..++||||+++
T Consensus        11 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~g   90 (318)
T 1fot_A           11 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEG   90 (318)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCC
Confidence            478999999999999998789999999997542   1234567777776  38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        91 g~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~  155 (318)
T 1fot_A           91 GELFSLLRKSQRFPNPVAKFYAAEVCLALE-YLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKY  155 (318)
T ss_dssp             CBHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCChheEEEcCCCCEEEeecCccee
Confidence            999999987778999999999999999999 9999   899999999999    788999999999873

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.86  E-value=1.9e-21  Score=209.16  Aligned_cols=136  Identities=17%  Similarity=0.277  Sum_probs=122.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||+|++...  .....+.+.+|+.+  .++||||+++++++.+.+..++||||+++|
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg  113 (362)
T 2bdw_A           34 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG  113 (362)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCC
Confidence            47899999999999999878999999999764  33445678889888  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .   ...+||+|||+|+.
T Consensus       114 ~L~~~l~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~  180 (362)
T 2bdw_A          114 ELFEDIVAREFYSEADASHCIQQILESIA-YCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  180 (362)
T ss_dssp             BHHHHHTTCSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence            99999988788999999999999999999 9999   899999999999    2   34699999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.86  E-value=2.9e-22  Score=218.83  Aligned_cols=134  Identities=19%  Similarity=0.210  Sum_probs=118.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||+|+.+.+++.||+|+++....   ...+.+.+|+.+  .++|||||++++++.+.+..+||||||++|
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg  154 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGG  154 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTE
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            789999999999999987899999999975321   122346677666  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.++++. ..+++..+..++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus       155 ~L~~~l~~-~~~~e~~~~~~~~qi~~aL~-~LH~---~givHrDLKp~NILl~~~g~ikL~DFG~a~~  217 (410)
T 3v8s_A          155 DLVNLMSN-YDVPEKWARFYTAEVVLALD-AIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  217 (410)
T ss_dssp             EHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             cHHHHHHc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence            99999975 46899999999999999999 9999   899999999999    888999999999863

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=205.65  Aligned_cols=137  Identities=23%  Similarity=0.310  Sum_probs=122.6

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|....+|+.||||.+.....      ...+++.+|+.+  .++||||+++++++...+..++|||
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   94 (326)
T 2y0a_A           15 TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILE   94 (326)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEE
Confidence            34789999999999999987899999999976432      135678889887  4899999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC----cEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN----IVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~----~vkI~DFGlar~  677 (678)
                      |+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++    .+||+|||+|+.
T Consensus        95 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~  167 (326)
T 2y0a_A           95 LVAGGELFDFLAEKESLTEEEATEFLKQILNGVY-YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  167 (326)
T ss_dssp             CCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             cCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHH-HHHH---CCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeE
Confidence            9999999999988788999999999999999999 9999   899999999999    444    799999999863

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.86  E-value=9.1e-22  Score=208.10  Aligned_cols=135  Identities=16%  Similarity=0.252  Sum_probs=120.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||||++..... ...+.+.+|+.+  .++|+||+++++++.+.+..++||||+++|+
T Consensus        12 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~   91 (323)
T 3tki_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEE
T ss_pred             eeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCc
Confidence            4789999999999999987899999999975432 234567788877  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        92 L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~  153 (323)
T 3tki_A           92 LFDRIEPDIGMPEPDAQRFFHQLMAGVV-YLHG---IGITHRDIKPENLLLDERDNLKISDFGLAT  153 (323)
T ss_dssp             GGGGSBTTTBCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccccchHHEEEeCCCCEEEEEeeccc
Confidence            9999998778999999999999999999 9999   899999999999    77899999999986

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.86  E-value=6.9e-22  Score=205.56  Aligned_cols=136  Identities=25%  Similarity=0.425  Sum_probs=121.3

Q ss_pred             hhhhcccCCceEEEEEEE----ccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|++    ..+++.||||++........++|.+|+.+  .++||||+++++++..  ....++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   93 (295)
T 3ugc_A           14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME   93 (295)
T ss_dssp             EEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEE
T ss_pred             hhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEE
Confidence            347899999999999984    44788999999988776677889999988  3899999999999854  456899999


Q ss_pred             cCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           94 YLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME-YLGT---KRYIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             CCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             eCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHH-HHhc---CCcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence            99999999999764 45999999999999999999 9999   899999999999    78899999999986

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.86  E-value=1.2e-21  Score=211.14  Aligned_cols=135  Identities=25%  Similarity=0.447  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEc-------cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE-------FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .+.||+|+||.||+|+..       .++..||||+++... ....+++.+|+.++  + +||||++++++|...+..++|
T Consensus        86 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv  165 (370)
T 2psq_A           86 GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI  165 (370)
T ss_dssp             EEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEE
Confidence            478999999999999863       245689999997653 34456788898883  6 899999999999999999999


Q ss_pred             EecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      |||+++|+|.+++...                ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.
T Consensus       166 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~~~  241 (370)
T 2psq_A          166 VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGME-YLAS---QKCIHRDLAARNVLVTENNV  241 (370)
T ss_dssp             EECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECTTCC
T ss_pred             EEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHH-HHHh---CCeeccccchhhEEECCCCC
Confidence            9999999999999743                35899999999999999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+|+
T Consensus       242 ~kl~DFG~a~  251 (370)
T 2psq_A          242 MKIADFGLAR  251 (370)
T ss_dssp             EEECCCSSCE
T ss_pred             EEEccccCCc
Confidence            9999999987

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.86  E-value=1.4e-21  Score=205.18  Aligned_cols=134  Identities=19%  Similarity=0.280  Sum_probs=120.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|....+++.||||++........+.+.+|+..+   .+||||+++++++...+..++||||+++|+|
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   98 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI   98 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcH
Confidence            5799999999999998778999999999876555567888888873   5799999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC---cEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN---IVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~---~vkI~DFGlar  676 (678)
                      .+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++   .+||+|||+++
T Consensus        99 ~~~l~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~  162 (316)
T 2ac3_A           99 LSHIHKRRHFNELEASVVVQDVASALD-FLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGS  162 (316)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCcc
Confidence            999987678999999999999999999 9999   899999999999    333   39999999986

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=3.1e-21  Score=203.92  Aligned_cols=135  Identities=15%  Similarity=0.240  Sum_probs=121.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+++.||+|.+.... .....+.+|+.+  .++||||+++++++.+.+..++||||+++|+|
T Consensus        10 ~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L   88 (321)
T 1tki_A           10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDI   88 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBH
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCH
Confidence            478999999999999998889999999997643 344568888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C--CCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H--KNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~--~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .  ++.+||+|||+|+.
T Consensus        89 ~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~  153 (321)
T 1tki_A           89 FERINTSAFELNEREIVSYVHQVCEALQ-FLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             HHHHTSSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCCeE
Confidence            9999865 47999999999999999999 9999   899999999999    3  78999999999863

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.86  E-value=5.7e-22  Score=208.34  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=116.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++...  ......++..|+..   ..+|+||++++++|.+++..+|||||+ +
T Consensus        62 ~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~  140 (311)
T 3p1a_A           62 LSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-G  140 (311)
T ss_dssp             EEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-C
T ss_pred             eheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-C
Confidence            46899999999999999878999999998654  22334455555544   258999999999999999999999999 6


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++... ..++|.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       141 ~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~  206 (311)
T 3p1a_A          141 PSLQQHCEAWGASLPEAQVWGYLRDTLLALA-HLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVE  206 (311)
T ss_dssp             CBHHHHHHHHCSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEE
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCCHHHEEECCCCCEEEccceeeee
Confidence            7999988753 56999999999999999999 9999   899999999999    788999999999863

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.86  E-value=1.8e-21  Score=204.44  Aligned_cols=133  Identities=27%  Similarity=0.455  Sum_probs=117.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+.  .|+.||||++....  ....++|.+|+.+  .++||||+++++++...+..++||||+++|
T Consensus        42 ~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  119 (309)
T 3p86_A           42 KEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG  119 (309)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTC
T ss_pred             eeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCC
Confidence            47899999999999976  68999999997653  3445678889887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCC---CCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGAN---TLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~---~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++....   .+++.+++.++.|+++||+ |||+   .+  |+||||||+|    .++.+||+|||+|+
T Consensus       120 ~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~  187 (309)
T 3p86_A          120 SLYRLLHKSGAREQLDERRRLSMAYDVAKGMN-YLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR  187 (309)
T ss_dssp             BHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHH-HHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred             cHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH-HHHc---CCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence            9999998753   3999999999999999999 9999   66  9999999999    78899999999986

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.86  E-value=2.7e-21  Score=209.73  Aligned_cols=136  Identities=19%  Similarity=0.326  Sum_probs=123.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+|+.||+|++..........+.+|+.++  ++||||+++++++.+....++||||+++|+|
T Consensus        56 ~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L  135 (387)
T 1kob_A           56 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL  135 (387)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcH
Confidence            47899999999999999878999999999876655667888998884  8999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|      ..+.+||+|||+|+.
T Consensus       136 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~  200 (387)
T 1kob_A          136 FDRIAAEDYKMSEAEVINYMRQACEGLK-HMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATK  200 (387)
T ss_dssp             HHHTTCTTCCBCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecccchHHeEEecCCCCceEEEeccccee
Confidence            9999865 47999999999999999999 9999   899999999999      346799999999873

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.85  E-value=1.4e-21  Score=209.20  Aligned_cols=136  Identities=17%  Similarity=0.227  Sum_probs=122.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+++...+|+.||||++....   ....+.+.+|+.+  .++||||+++++++.+.+..++||||+++
T Consensus        46 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g  125 (350)
T 1rdq_E           46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG  125 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            378999999999999998789999999997542   2345677888877  38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.+++.++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       126 g~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~  190 (350)
T 1rdq_E          126 GEMFSHLRRIGRFSEPHARFYAAQIVLTFE-YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             CBHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccccCccceEEECCCCCEEEccccccee
Confidence            999999987678999999999999999999 9999   899999999999    788999999999873

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=211.43  Aligned_cols=135  Identities=19%  Similarity=0.237  Sum_probs=123.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||+|++....   ....+.+.+|+.++  ++|||||++++++...+..++||||+++
T Consensus        20 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~g   99 (384)
T 4fr4_A           20 LRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLG   99 (384)
T ss_dssp             EEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            478999999999999998789999999997542   23456788888873  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       100 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~  163 (384)
T 4fr4_A          100 GDLRYHLQQNVHFKEETVKLFICELVMALD-YLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAA  163 (384)
T ss_dssp             EEHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCcHHHeEECCCCCEEEeccceee
Confidence            999999998788999999999999999999 9999   899999999999    88899999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.85  E-value=1.2e-21  Score=209.91  Aligned_cols=136  Identities=20%  Similarity=0.208  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .++||+|+||.||+|+.+.+|+.||||+++...   ....+.+..|..++   .+||||+++++++...+..++||||++
T Consensus        25 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~  104 (353)
T 2i0e_A           25 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN  104 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCC
Confidence            478999999999999998678899999997642   23345677777763   389999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus       105 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~  170 (353)
T 2i0e_A          105 GGDLMYHIQQVGRFKEPHAVFYAAEIAIGLF-FLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  170 (353)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCcccc
Confidence            9999999987678999999999999999999 9999   899999999999    788999999999974

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.85  E-value=9.2e-22  Score=220.43  Aligned_cols=136  Identities=24%  Similarity=0.415  Sum_probs=122.9

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|.+...+..||||.++... ...++|.+|+.+  .++||||++++++|...+..+||||||++|+
T Consensus       224 ~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~  302 (495)
T 1opk_A          224 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGN  302 (495)
T ss_dssp             EEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred             eeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCC
Confidence            3578999999999999998678999999997654 346789999888  4999999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.++|+..  ..+++..++.|+.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       303 L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  367 (495)
T 1opk_A          303 LLDYLRECNRQEVSAVVLLYMATQISSAME-YLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRL  367 (495)
T ss_dssp             HHHHHHHSCTTTSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEEC
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChhhEEECCCCcEEEeeccccee
Confidence            99999743  56999999999999999999 9999   899999999999    778999999999873

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=209.09  Aligned_cols=132  Identities=13%  Similarity=0.124  Sum_probs=113.4

Q ss_pred             hhhcccCCceEEEEEE-----EccCCEEEEEEEeccCchhhHHHHHHHHHH--hcC---CCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGY-----LEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVH---HKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~-----~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~---H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|.     ....++.||||+++....   .++..|+..  .++   |+||+++++++...+..+|||
T Consensus        70 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~  146 (365)
T 3e7e_A           70 HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVG  146 (365)
T ss_dssp             EEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEE
T ss_pred             EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEE
Confidence            4689999999999994     444788999999986543   355555555  244   999999999999999999999


Q ss_pred             ecCCCCCHHHhhcC-----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-----------CCcE
Q 038969          608 EFMAKGNLEEHLSG-----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-----------KNIV  667 (678)
Q Consensus       608 Ey~~~GsL~~~L~~-----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-----------~~~v  667 (678)
                      |||++|+|.+++..     ...+++.+++.|+.|+++||+ |||+   .+||||||||+|    .           .+.+
T Consensus       147 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~-~lH~---~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~  222 (365)
T 3e7e_A          147 ELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIE-QVHD---CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGL  222 (365)
T ss_dssp             CCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCSGGGEEECGGGTCC------CTTE
T ss_pred             eccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHH-HHhh---CCeecCCCCHHHEEecccccCccccccccCCE
Confidence            99999999999962     467999999999999999999 9999   899999999999    4           6899


Q ss_pred             EEEeeCCcc
Q 038969          668 KLITFSIIK  676 (678)
Q Consensus       668 kI~DFGlar  676 (678)
                      ||+|||+|+
T Consensus       223 kl~DFG~a~  231 (365)
T 3e7e_A          223 ALIDLGQSI  231 (365)
T ss_dssp             EECCCTTCE
T ss_pred             EEeeCchhh
Confidence            999999995

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.85  E-value=9e-22  Score=203.78  Aligned_cols=137  Identities=22%  Similarity=0.324  Sum_probs=121.2

Q ss_pred             hhhhcccCCceEEEEEEEccCC-------EEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG-------TQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g-------~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||+|....++       ..||+|.+........+.|.+|+..  .++||||+++++++...+..++||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   91 (289)
T 4fvq_A           12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQ   91 (289)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEE
T ss_pred             eeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEE
Confidence            3478999999999999987555       5799999987666667889999887  489999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc--------EEEEeeCC
Q 038969          608 EFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI--------VKLITFSI  674 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~--------vkI~DFGl  674 (678)
                      ||+++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.        +||+|||+
T Consensus        92 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~  167 (289)
T 4fvq_A           92 EFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMH-FLEE---NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGI  167 (289)
T ss_dssp             ECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCS
T ss_pred             ECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHhh---CCeECCCcCcceEEEecCCcccccccceeeeccCcc
Confidence            999999999999865 34999999999999999999 9999   899999999999    4444        99999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      ++.
T Consensus       168 ~~~  170 (289)
T 4fvq_A          168 SIT  170 (289)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            863

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.85  E-value=3e-21  Score=204.34  Aligned_cols=131  Identities=18%  Similarity=0.251  Sum_probs=116.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|....+|+.||||++...   ....+.+|+..  .+. ||||+++++++.+....++||||+++|+|
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L   93 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL   93 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence            6799999999999999878999999999753   33556677766  354 99999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC---cEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN---IVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~---~vkI~DFGlar  676 (678)
                      .+++.....+++.++..|+.|+++||+ |||+   .+|+||||||+|    .++   .+||+|||+|+
T Consensus        94 ~~~l~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~  157 (325)
T 3kn6_A           94 FERIKKKKHFSETEASYIMRKLVSAVS-HMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFAR  157 (325)
T ss_dssp             HHHHHHCSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCE
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccce
Confidence            999988788999999999999999999 9999   899999999999    333   79999999986

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=212.53  Aligned_cols=136  Identities=16%  Similarity=0.252  Sum_probs=121.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.+|+|++....  ....+.+.+|+.+  .++||||+++++++.+.+..++||||+++|
T Consensus        16 ~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg   95 (444)
T 3soa_A           16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGG   95 (444)
T ss_dssp             EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCC
T ss_pred             EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCC
Confidence            478999999999999998899999999997653  3345678889887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|       +++.+||+|||+|+.
T Consensus        96 ~L~~~i~~~~~~~e~~~~~i~~qil~aL~-~lH~---~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~  162 (444)
T 3soa_A           96 ELFEDIVAREYYSEADASHCIQQILEAVL-HCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE  162 (444)
T ss_dssp             BHHHHHHHCSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence            99999987788999999999999999999 9999   899999999999       357899999999863

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.85  E-value=2.9e-21  Score=198.02  Aligned_cols=133  Identities=24%  Similarity=0.452  Sum_probs=120.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|... +++.||+|++..... ..+++.+|+..  .++||||+++++++.+.+..++||||+++|+|
T Consensus        15 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   92 (269)
T 4hcu_A           15 VQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL   92 (269)
T ss_dssp             EEEEEECSSCEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBH
T ss_pred             eheecCCCccEEEEEEec-CCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcH
Confidence            478999999999999987 788999999976542 34678888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        93 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  154 (269)
T 4hcu_A           93 SDYLRTQRGLFAAETLLGMCLDVCEGMA-YLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTR  154 (269)
T ss_dssp             HHHHHTTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGG
T ss_pred             HHHHHhcCcccCHHHHHHHHHHHHHHHH-HHHh---CCeecCCcchheEEEcCCCCEEeccccccc
Confidence            9999754 56999999999999999999 9999   899999999999    77889999999986

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.85  E-value=1.3e-21  Score=211.24  Aligned_cols=136  Identities=22%  Similarity=0.234  Sum_probs=115.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+++.+.+++.||||+++....   ...+.+..|...   .++||||+++++++...+..++||||++
T Consensus        43 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~  122 (373)
T 2r5t_A           43 LKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN  122 (373)
T ss_dssp             EEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCC
Confidence            4789999999999999987889999999976432   233456666655   2789999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++..+..++.|++.||+ |||+   .+|+||||||+|    .++++||+|||+|+.
T Consensus       123 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~givHrDlkp~NIll~~~g~ikL~DFG~a~~  188 (373)
T 2r5t_A          123 GGELFYHLQRERCFLEPRARFYAAEIASALG-YLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKE  188 (373)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCHHHEEECCCCCEEEeeCccccc
Confidence            9999999987678999999999999999999 9999   899999999999    788999999999974

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.85  E-value=1.2e-21  Score=205.61  Aligned_cols=135  Identities=21%  Similarity=0.274  Sum_probs=119.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe----eEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN----MGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~----~~LV~E  608 (678)
                      .+.||+|+||.||+++...+++.||||++....   ....+.|.+|+..  .++||||+++++++.....    .++|||
T Consensus        17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e   96 (311)
T 3ork_A           17 GEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME   96 (311)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEe
Confidence            478999999999999998789999999997642   2335678888887  3899999999999866443    499999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        97 ~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~  164 (311)
T 3ork_A           97 YVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN-FSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIAR  164 (311)
T ss_dssp             CCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred             cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence            9999999999987678999999999999999999 9999   899999999999    88899999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.85  E-value=2e-21  Score=215.30  Aligned_cols=134  Identities=25%  Similarity=0.387  Sum_probs=120.0

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... ++..||||.++... ...++|.+|+.++  ++||||+++++++. .+..+||||||++|+
T Consensus       192 ~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~  268 (454)
T 1qcf_A          192 LEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGS  268 (454)
T ss_dssp             EEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCB
T ss_pred             EEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCc
Confidence            3578999999999999987 78899999998654 3467899999884  89999999999986 667899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.++++..  ..+++.++++++.|+|+||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       269 L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  333 (454)
T 1qcf_A          269 LLDFLKSDEGSKQPLPKLIDFSAQIAEGMA-FIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARV  333 (454)
T ss_dssp             HHHHHHSHHHHTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGGG
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCceE
Confidence            99999864  46899999999999999999 9999   899999999999    788999999999973

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.85  E-value=3e-21  Score=198.70  Aligned_cols=135  Identities=19%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....++..||+|++........+.+.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   93 (277)
T 3f3z_A           14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGEL   93 (277)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred             eeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcH
Confidence            4789999999999999987788999999987655567788899888  38999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      .+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|       .++.+||+|||+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~  157 (277)
T 3f3z_A           94 FERVVHKRVFRESDAARIMKDVLSAVA-YCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA  157 (277)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence            999987778999999999999999999 9999   899999999999       45789999999986

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.85  E-value=2.7e-21  Score=204.74  Aligned_cols=136  Identities=23%  Similarity=0.293  Sum_probs=114.7

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+++..   .+|+.||+|+++...    ......+.+|+.+  .++||||+++++++...+..++|||
T Consensus        22 ~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  101 (327)
T 3a62_A           22 LRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILE  101 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEe
Confidence            478999999999999874   478999999997642    2234557777777  4899999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       102 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~  170 (327)
T 3a62_A          102 YLSGGELFMQLEREGIFMEDTACFYLAEISMALG-HLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKE  170 (327)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence            9999999999987678999999999999999999 9999   899999999999    788999999999863

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.85  E-value=2.9e-21  Score=213.80  Aligned_cols=132  Identities=27%  Similarity=0.452  Sum_probs=117.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC-eeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT-NMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~-~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|..  .|+.||||+++...  ..++|.+|+.++  ++||||+++++++.+.. ..+||||||++|+
T Consensus       198 ~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~  273 (450)
T 1k9a_A          198 LQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS  273 (450)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCB
T ss_pred             EeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCc
Confidence            47899999999999987  58899999998654  456788898884  89999999999987765 7999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..+++..++.++.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       274 L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          274 LVDYLRSRGRSVLGGDCLLKFSLDVCEAME-YLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence            99999754  34799999999999999999 9999   899999999999    788999999999874

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=201.51  Aligned_cols=135  Identities=21%  Similarity=0.319  Sum_probs=115.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh--------------------------hHHHHHHHHHH--hcCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ--------------------------GYKQFQAEVQY--IVHHKN  589 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~--------------------------~~~~f~~Ev~~--~l~H~N  589 (678)
                      .+.||+|+||.||+|+...+++.||||++......                          ..+++.+|+.+  .++|||
T Consensus        18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   97 (298)
T 2zv2_A           18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPN   97 (298)
T ss_dssp             EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTT
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCC
Confidence            47899999999999999878999999999754311                          13467888887  389999


Q ss_pred             cccEEEEEEc--CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C
Q 038969          590 LTTLVGYCDE--DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H  663 (678)
Q Consensus       590 Iv~l~g~~~~--~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~  663 (678)
                      |+++++++..  .+..++||||+++|+|.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .
T Consensus        98 iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~  172 (298)
T 2zv2_A           98 VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL-KPLSEDQARFYFQDLIKGIE-YLHY---QKIIHRDIKPSNLLVGE  172 (298)
T ss_dssp             BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECT
T ss_pred             CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHEEECC
Confidence            9999999986  5689999999999999987654 67999999999999999999 9999   899999999999    7


Q ss_pred             CCcEEEEeeCCccc
Q 038969          664 KNIVKLITFSIIKN  677 (678)
Q Consensus       664 ~~~vkI~DFGlar~  677 (678)
                      ++.+||+|||+|+.
T Consensus       173 ~~~~kl~Dfg~~~~  186 (298)
T 2zv2_A          173 DGHIKIADFGVSNE  186 (298)
T ss_dssp             TSCEEECCCTTCEE
T ss_pred             CCCEEEecCCCccc
Confidence            88999999999863

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.85  E-value=2.9e-21  Score=206.64  Aligned_cols=137  Identities=18%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc-----hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-----VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      +.+.||+|+||.||+|....+|+.||||++....     ....+.+.+|+.+  .++||||+++++++...+..+|||||
T Consensus        28 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~  107 (351)
T 3c0i_A           28 LCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEF  107 (351)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeC
Confidence            3478999999999999998789999999986432     1235678889888  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      |++|+|.+++...    ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .   ...+||+|||+|+.
T Consensus       108 ~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          108 MDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALR-YCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             CSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             CCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            9999999888532    46899999999999999999 9999   899999999999    2   23499999999863

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.85  E-value=3.1e-21  Score=203.73  Aligned_cols=134  Identities=25%  Similarity=0.355  Sum_probs=114.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC----eeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT----NMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~----~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.  .++.||||++..... ....++.|+..  .++||||+++++++....    ..++||||++
T Consensus        29 ~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~  105 (322)
T 3soc_A           29 LEVKARGRFGCVWKAQL--LNEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHE  105 (322)
T ss_dssp             EEEEECSTTCEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCT
T ss_pred             hheecccCceEEEEEEE--CCCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCC
Confidence            47899999999999987  589999999976432 33455667766  388999999999997744    4799999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-------CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-------CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-------~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.++++. ..++|.+++.++.|+++||+ |||+.+       .++|+||||||+|    .++.+||+|||+|+
T Consensus       106 ~g~L~~~l~~-~~~~~~~~~~i~~qi~~al~-~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~  179 (322)
T 3soc_A          106 KGSLSDFLKA-NVVSWNELCHIAETMARGLA-YLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL  179 (322)
T ss_dssp             TCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCHHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccc
Confidence            9999999976 46999999999999999999 999821       1299999999999    78899999999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.85  E-value=3.1e-21  Score=207.29  Aligned_cols=134  Identities=20%  Similarity=0.245  Sum_probs=119.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+++...+++.||||++..... ..+.+.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        25 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L  103 (361)
T 3uc3_A           25 VKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGEL  103 (361)
T ss_dssp             EEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred             EEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCH
Confidence            4789999999999999988899999999976432 23567788777  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC--cEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN--IVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~--~vkI~DFGlar  676 (678)
                      .+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    ..+  .+||+|||+|+
T Consensus       104 ~~~l~~~~~~~~~~~~~i~~ql~~~L~-~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A          104 YERICNAGRFSEDEARFFFQQLLSGVS-YCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC-
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCccc
Confidence            999976678999999999999999999 9999   899999999999    333  49999999987

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.85  E-value=3.9e-21  Score=202.42  Aligned_cols=136  Identities=21%  Similarity=0.310  Sum_probs=118.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC--eeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT--NMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~--~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||||++.... ....+.+.+|+.+  .++||||+++++++....  ..++||||+++
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   93 (319)
T 4euu_A           14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC   93 (319)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTT
T ss_pred             EEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCC
Confidence            478999999999999998779999999997643 2345677888877  489999999999998755  78999999999


Q ss_pred             CCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGlar~  677 (678)
                      |+|.+++...   ..+++.+++.++.|+++||+ |||+   .+|+||||||+|        ..+.+||+|||+|+.
T Consensus        94 ~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           94 GSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMN-HLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             CBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             CCHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence            9999999864   33999999999999999999 9999   899999999999        334599999999863

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.85  E-value=5.4e-21  Score=197.42  Aligned_cols=133  Identities=23%  Similarity=0.391  Sum_probs=117.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|... ++..||||++..... ..+++.+|+..  .++|+||+++++++...+..++||||+++|+|
T Consensus        29 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L  106 (283)
T 3gen_A           29 LKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL  106 (283)
T ss_dssp             EEECC---CEEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBH
T ss_pred             HhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcH
Confidence            478999999999999987 788999999986542 34678888887  38999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus       107 ~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  168 (283)
T 3gen_A          107 LNYLREMRHRFQTQQLLEMCKDVCEAME-YLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR  168 (283)
T ss_dssp             HHHHHCGGGCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGG
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCCCccceEEEcCCCCEEEccccccc
Confidence            999986 367999999999999999999 9999   899999999999    78899999999986

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.85  E-value=2.2e-21  Score=207.40  Aligned_cols=135  Identities=27%  Similarity=0.423  Sum_probs=117.1

Q ss_pred             hhhcccCCceEEEEEEE-----ccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCC-eeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDT-NMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~-~~~LV~  607 (678)
                      .+.||+|+||.||+|++     ..+++.||||+++... ....+.+.+|+.++  + +||||+++++++...+ ..++||
T Consensus        27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~  106 (359)
T 3vhe_A           27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV  106 (359)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEE
T ss_pred             ceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEE
Confidence            47899999999999984     3356899999997653 34456788998873  5 8999999999997754 489999


Q ss_pred             ecCCCCCHHHhhcCCCC---------------------------------------------------------------
Q 038969          608 EFMAKGNLEEHLSGANT---------------------------------------------------------------  624 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~---------------------------------------------------------------  624 (678)
                      ||+++|+|.+++.....                                                               
T Consensus       107 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (359)
T 3vhe_A          107 EFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLY  186 (359)
T ss_dssp             ECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------------CTT
T ss_pred             EecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchh
Confidence            99999999999976422                                                               


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          625 ---LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       625 ---l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                         +++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       187 ~~~l~~~~~~~~~~ql~~aL~-~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  241 (359)
T 3vhe_A          187 KDFLTLEHLICYSFQVAKGME-FLAS---RKCIHRDLAARNILLSEKNVVKICDFGLAR  241 (359)
T ss_dssp             TTCBCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGS
T ss_pred             ccccCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCChhhEEEcCCCcEEEEecccee
Confidence               899999999999999999 9999   899999999999    78899999999986

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.84  E-value=1.7e-21  Score=215.30  Aligned_cols=137  Identities=19%  Similarity=0.214  Sum_probs=114.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++...   .......+.+|+.+  .++||||+++++++...+..+||||||++
T Consensus       153 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  232 (446)
T 4ejn_A          153 LKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG  232 (446)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSS
T ss_pred             eEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCC
Confidence            47899999999999999888999999999753   22334567778777  38899999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|+++||+ |||+.  .+|+||||||+|    .++.+||+|||+|+.
T Consensus       233 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG~a~~  298 (446)
T 4ejn_A          233 GELFFHLSRERVFSEDRARFYGAEIVSALD-YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKE  298 (446)
T ss_dssp             CBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHHH--TCCCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHhhc--CCEEECCCCHHHEEECCCCCEEEccCCCcee
Confidence            999999987778999999999999999999 99952  579999999999    788999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.84  E-value=3.1e-21  Score=204.81  Aligned_cols=135  Identities=28%  Similarity=0.444  Sum_probs=119.9

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+..     .+++.||||+++... ....++|.+|+..  .++||||+++++++...+..++||||
T Consensus        52 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  131 (343)
T 1luf_A           52 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEY  131 (343)
T ss_dssp             EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEec
Confidence            478999999999999985     244899999998653 3445678899888  38999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC------------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          610 MAKGNLEEHLSGA------------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       610 ~~~GsL~~~L~~~------------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      +++|+|.+++...                        ..+++.+++.++.|+++||+ |||+   .+|+||||||+|   
T Consensus       132 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~-~LH~---~~ivH~Dlkp~NIl~  207 (343)
T 1luf_A          132 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMA-YLSE---RKFVHRDLATRNCLV  207 (343)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEE
T ss_pred             CCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCcceEEE
Confidence            9999999999642                        46999999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       .++.+||+|||+++
T Consensus       208 ~~~~~~kl~Dfg~~~  222 (343)
T 1luf_A          208 GENMVVKIADFGLSR  222 (343)
T ss_dssp             CGGGCEEECCCSCHH
T ss_pred             CCCCeEEEeecCCCc
Confidence             77899999999986

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.84  E-value=5.6e-21  Score=198.51  Aligned_cols=134  Identities=19%  Similarity=0.244  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...+|+.||||++....  ....+.+.+|+.+  .++||||+++++++...+..++||||+++ 
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   85 (292)
T 3o0g_A            7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-   85 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-
T ss_pred             eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-
Confidence            468999999999999998789999999997543  2334678888887  48999999999999999999999999986 


Q ss_pred             CHHHhhc-CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLS-GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~-~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++. ....+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 ~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~-~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~  149 (292)
T 3o0g_A           86 DLKKYFDSCNGDLDPEIVKSFLFQLLKGLG-FCHS---RNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             EHHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            5555554 3578999999999999999999 9999   899999999999    78899999999986

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.84  E-value=2.4e-21  Score=206.11  Aligned_cols=134  Identities=17%  Similarity=0.260  Sum_probs=120.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||||++....   ....+.+.+|+..  .++||||+++++++...+..++||||+ +
T Consensus        14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~   92 (336)
T 3h4j_B           14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-G   92 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-C
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-C
Confidence            478999999999999998789999999997532   1223568888887  489999999999999999999999999 7


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        93 g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~  156 (336)
T 3h4j_B           93 GELFDYIVEKKRMTEDEGRRFFQQIICAIE-YCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSN  156 (336)
T ss_dssp             EEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTB
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCchhhEEEcCCCCEEEEEeccce
Confidence            899999987778999999999999999999 9999   899999999999    77899999999986

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=209.01  Aligned_cols=135  Identities=25%  Similarity=0.382  Sum_probs=116.9

Q ss_pred             hhhcccCCceEEEEEEE-----ccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.     ...++.||||+++.. ......++.+|+.+  .++||||+++++++......++||||
T Consensus        76 ~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~  155 (367)
T 3l9p_A           76 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLEL  155 (367)
T ss_dssp             EEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEe
Confidence            47899999999999994     335678999999764 34455678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA-------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~-------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGla  675 (678)
                      +++|+|.+++...       ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   ...+||+|||+|
T Consensus       156 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a  231 (367)
T 3l9p_A          156 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQ-YLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  231 (367)
T ss_dssp             CTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             CCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCChhhEEEecCCCCceEEECCCccc
Confidence            9999999999642       45999999999999999999 9999   899999999999    2   335999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       232 ~  232 (367)
T 3l9p_A          232 R  232 (367)
T ss_dssp             H
T ss_pred             c
Confidence            6

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.84  E-value=4.5e-21  Score=213.29  Aligned_cols=136  Identities=18%  Similarity=0.310  Sum_probs=123.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....   .....+.+|+.+  .++||||+++++++...+..+|||||+++
T Consensus        21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~g  100 (476)
T 2y94_A           21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSG  100 (476)
T ss_dssp             EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSS
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence            4789999999999999987899999999975422   234678889888  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       101 g~L~~~l~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~  165 (476)
T 2y94_A          101 GELFDYICKNGRLDEKESRRLFQQILSGVD-YCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNM  165 (476)
T ss_dssp             EEHHHHTTSSSSCCHHHHHHHHHHHHHHHH-HHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCCCcccccHHHEEEecCCCeEEEeccchhh
Confidence            999999988788999999999999999999 9999   899999999999    788999999999873

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.84  E-value=7.3e-21  Score=200.59  Aligned_cols=137  Identities=23%  Similarity=0.332  Sum_probs=122.6

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchh------hHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ------GYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~------~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|....+|+.||||.+......      ..+++.+|+..  .++||||+++++++...+..++|||
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   95 (321)
T 2a2a_A           16 IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILE   95 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             EeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEE
Confidence            357899999999999999878999999999764321      35678889887  4899999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC----cEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN----IVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~----~vkI~DFGlar~  677 (678)
                      |+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++    .+||+|||+++.
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           96 LVSGGELFDFLAQKESLSEEEATSFIKQILDGVN-YLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             CCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            9999999999988788999999999999999999 9999   899999999999    444    799999999863

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.84  E-value=7e-21  Score=197.23  Aligned_cols=136  Identities=19%  Similarity=0.316  Sum_probs=121.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.+.||+|+||.||++....++..||+|.+.... ....+.+.+|+..  .++||||+++++++...+..++||||+++|
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  105 (285)
T 3is5_A           26 FKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGG  105 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCC
T ss_pred             ecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCC
Confidence            3578999999999999998789999999997653 2346778888887  389999999999999999999999999999


Q ss_pred             CHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      +|.+++...    ..+++..++.|+.|+++||+ |||+   .+|+||||||+|       ..+.+||+|||+|+
T Consensus       106 ~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A          106 ELLERIVSAQARGKALSEGYVAELMKQMMNALA-YFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             BHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             cHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence            999998532    67999999999999999999 9999   899999999999       34679999999986

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.84  E-value=5.8e-21  Score=195.56  Aligned_cols=133  Identities=23%  Similarity=0.365  Sum_probs=120.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|... ++..||||++..... ..+++.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (268)
T 3sxs_A           13 LKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCL   90 (268)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBH
T ss_pred             eeeeccCCCceEEEEEec-CceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcH
Confidence            478999999999999887 788999999976542 34678888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        91 ~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           91 LNYLRSHGKGLEPSQLLEMCYDVCEGMA-FLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             HHHHHHHGGGCCHHHHHHHHHHHHHHHH-HHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCcCcceEEECCCCCEEEccCccce
Confidence            9999764 45999999999999999999 9999   899999999999    78899999999986

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.84  E-value=6e-21  Score=199.88  Aligned_cols=135  Identities=25%  Similarity=0.381  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccC-chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSAS-SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|...     .+++.||||++... .....+++.+|+..+  ++||||+++++++...+..++||||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  107 (314)
T 2ivs_A           28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY  107 (314)
T ss_dssp             EEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEee
Confidence            478999999999999872     24589999999764 334557788898883  8999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCC------------------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          610 MAKGNLEEHLSGAN------------------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       610 ~~~GsL~~~L~~~~------------------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      +++|+|.+++....                        .+++.++++++.|+++||+ |||+   .+|+||||||+|   
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~dikp~NIli  183 (314)
T 2ivs_A          108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQ-YLAE---MKLVHRDLAARNILV  183 (314)
T ss_dssp             CTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEE
T ss_pred             cCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHH-HHHH---CCCcccccchheEEE
Confidence            99999999997532                        3899999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       +++.+||+|||+|+
T Consensus       184 ~~~~~~kl~Dfg~~~  198 (314)
T 2ivs_A          184 AEGRKMKISDFGLSR  198 (314)
T ss_dssp             ETTTEEEECCCTTCE
T ss_pred             cCCCCEEEccccccc
Confidence             78899999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.84  E-value=4e-21  Score=204.30  Aligned_cols=135  Identities=18%  Similarity=0.226  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||||++.....        ...+.+.+|+.+  .++||||+++++++...+..++||
T Consensus        29 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~  108 (335)
T 3dls_A           29 MSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVM  108 (335)
T ss_dssp             EEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEE
Confidence            3689999999999999988899999999976421        123356677777  489999999999999999999999


Q ss_pred             ecCCCC-CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          608 EFMAKG-NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~G-sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||+..| +|.+++.....+++..++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       109 e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~  178 (335)
T 3dls_A          109 EKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVG-YLRL---KDIIHRDIKDENIVIAEDFTIKLIDFGSAA  178 (335)
T ss_dssp             ECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEEeccCHHHEEEcCCCcEEEeecccce
Confidence            999877 99999998788999999999999999999 9999   899999999999    78899999999986

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.84  E-value=9.5e-21  Score=202.01  Aligned_cols=132  Identities=14%  Similarity=0.222  Sum_probs=115.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|..+.+|+.||||++......    +.+|+++   +.+||||+++++++.+.+..++||||+++|+
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~  102 (342)
T 2qr7_A           27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGE  102 (342)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCc
Confidence            47899999999999999888999999999765432    2334444   2589999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CC---CcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HK---NIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~---~~vkI~DFGlar~  677 (678)
                      |.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|     +.   ..+||+|||+|+.
T Consensus       103 L~~~i~~~~~~~~~~~~~~~~qi~~al~-~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~  169 (342)
T 2qr7_A          103 LLDKILRQKFFSEREASAVLFTITKTVE-YLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ  169 (342)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence            9999988788999999999999999999 9999   899999999999     22   2599999999873

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.84  E-value=7.7e-21  Score=203.25  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=112.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+...+++.||||+++...  ..+.+.+|+.+  .++||||+++++++...+..++||||+++|+|
T Consensus        58 ~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L  135 (349)
T 2w4o_A           58 ESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGEL  135 (349)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCH
Confidence            478999999999999998778999999997643  34567778777  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar  676 (678)
                      .+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   ++.+||+|||+++
T Consensus       136 ~~~l~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~  199 (349)
T 2w4o_A          136 FDRIVEKGYYSERDAADAVKQILEAVA-YLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSK  199 (349)
T ss_dssp             HHHHTTCSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC---
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEecCCCcccEEEecCCCCCCEEEccCcccc
Confidence            999988788999999999999999999 9999   899999999999    2   7899999999986

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.84  E-value=8.9e-21  Score=205.52  Aligned_cols=135  Identities=18%  Similarity=0.161  Sum_probs=121.9

Q ss_pred             hhhcccC--CceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKG--GFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G--~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|  +||.||+|+...+|+.||||++....  ....+.+.+|+.+  .++|||||++++++...+..++|||||+
T Consensus        30 ~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  109 (389)
T 3gni_B           30 LTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA  109 (389)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             EecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccC
Confidence            4789999  99999999998789999999997642  3445678888887  4899999999999999999999999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++...  ..+++..+..|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||++.
T Consensus       110 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          110 YGSAKDLICTHFMDGMNELAIAYILQGVLKALD-YIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             TCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEcCCCCEEEcccccce
Confidence            99999999754  67999999999999999999 9999   899999999999    78899999999874

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.84  E-value=1e-20  Score=196.89  Aligned_cols=132  Identities=24%  Similarity=0.337  Sum_probs=111.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--h--cCCCCcccEEEEEEc----CCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--I--VHHKNLTTLVGYCDE----DTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~--l~H~NIv~l~g~~~~----~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.  +|+.||||++....   ...+..|.+.  .  ++||||+++++++..    ....++||||
T Consensus        13 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~   87 (301)
T 3q4u_A           13 LECVGKGRYGEVWRGSW--QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHY   87 (301)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECC
T ss_pred             EEeeccCCCcEEEEEEE--CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhh
Confidence            47899999999999987  78999999997543   2334444433  3  799999999999754    3458999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.++++. ..+++..+++|+.|+++||+ |||...     ..+|+||||||+|    .++.+||+|||+|+
T Consensus        88 ~~~g~L~~~l~~-~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~  161 (301)
T 3q4u_A           88 HEMGSLYDYLQL-TTLDTVSCLRIVLSIASGLA-HLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV  161 (301)
T ss_dssp             CTTCBHHHHHTT-CCBCHHHHHHHHHHHHHHHH-HHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ccCCCHHHHHhh-cccCHHHHHHHHHHHHHHHH-HHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCee
Confidence            999999999965 57999999999999999999 999211     2899999999999    78899999999986

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=205.76  Aligned_cols=136  Identities=26%  Similarity=0.445  Sum_probs=119.2

Q ss_pred             hhhcccCCceEEEEEEEc-------cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE-------FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .+.||+|+||.||+|+..       ..+..||||++.... ....+++.+|+.++  + +||||+++++++...+..++|
T Consensus        74 ~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv  153 (382)
T 3tt0_A           74 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI  153 (382)
T ss_dssp             EEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEE
Confidence            478999999999999863       234689999997653 34457788888873  5 899999999999999999999


Q ss_pred             EecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      |||+++|+|.+++...                ..+++.++++|+.|+++||+ |||+   .+|+||||||+|    +++.
T Consensus       154 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~  229 (382)
T 3tt0_A          154 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGME-YLAS---KKCIHRDLAARNVLVTEDNV  229 (382)
T ss_dssp             EECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCC
T ss_pred             EEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCcceEEEcCCCc
Confidence            9999999999999753                35999999999999999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCccc
Q 038969          667 VKLITFSIIKN  677 (678)
Q Consensus       667 vkI~DFGlar~  677 (678)
                      +||+|||+|+.
T Consensus       230 ~kL~DFG~a~~  240 (382)
T 3tt0_A          230 MKIADFGLARD  240 (382)
T ss_dssp             EEECSCSCCCC
T ss_pred             EEEcccCcccc
Confidence            99999999873

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.84  E-value=4.1e-21  Score=212.66  Aligned_cols=134  Identities=24%  Similarity=0.394  Sum_probs=118.7

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|... .+..||||.++... ...++|.+|+.+  .++||||+++++++.+ +..+||||||++|+
T Consensus       188 ~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gs  264 (452)
T 1fmk_A          188 LEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGS  264 (452)
T ss_dssp             EEEEEEECSSCEEEEEEET-TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCB
T ss_pred             eeeeecCCCCeEEEEEEEC-CCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCC
Confidence            3478999999999999987 67889999998654 235678999888  4999999999999876 67899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..+++.+++.++.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       265 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          265 LLDFLKGETGKYLRLPQLVDMAAQIASGMA-YVER---MNYVHRDLRAANILVGENLVCKVADFGLARL  329 (452)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCChhhEEECCCCCEEECCCcccee
Confidence            99999753  56999999999999999999 9999   899999999999    778999999999873

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.84  E-value=5.3e-21  Score=211.99  Aligned_cols=135  Identities=15%  Similarity=0.219  Sum_probs=111.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-----CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-----DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-----~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+|+.||||++...  .....+++.+|+.+  .++|+||+++++++..     ....++|||
T Consensus        58 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e  137 (458)
T 3rp9_A           58 RHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLE  137 (458)
T ss_dssp             CCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEC
T ss_pred             eeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEe
Confidence            47899999999999999878999999999653  33456778899888  3899999999999843     356899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+ +|+|.+++.....+++..+..++.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       138 ~~-~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  205 (458)
T 3rp9_A          138 IA-DSDFKKLFRTPVYLTELHIKTLLYNLLVGVK-YVHS---AGILHRDLKPANCLVNQDCSVKVCDFGLART  205 (458)
T ss_dssp             CC-SEEHHHHHHSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred             cc-ccchhhhcccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcCCCCCChhhEEECCCCCEeecccccchh
Confidence            98 4799999988788999999999999999999 9999   899999999999    788999999999974

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.84  E-value=6.9e-21  Score=215.37  Aligned_cols=136  Identities=19%  Similarity=0.257  Sum_probs=121.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .++||+|+||.||+|+...+|+.||||++....   ......+.+|+.+  .++||||+++++++.+.+..+||||||++
T Consensus       189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~g  268 (576)
T 2acx_A          189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG  268 (576)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCC
Confidence            378999999999999998789999999997542   2234567788877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++...  ..+++..++.++.||+.||+ |||+   .+||||||||+|    .++++||+|||+|+.
T Consensus       269 g~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~-yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~  335 (576)
T 2acx_A          269 GDLKFHIYHMGQAGFPEARAVFYAAEICCGLE-DLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVH  335 (576)
T ss_dssp             CBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeccCCchheEEEeCCCCeEEEeccccee
Confidence            9999999764  45999999999999999999 9999   899999999999    788999999999873

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=198.05  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=122.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||||++....  ....+.+.+|+..  .++|+||+++++++...+..++||||++++
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (311)
T 4agu_A            8 IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHT   87 (311)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCc
Confidence            478999999999999998779999999986543  2335667888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        88 ~l~~~~~~~~~~~~~~~~~i~~~l~~~l~-~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  150 (311)
T 4agu_A           88 VLHELDRYQRGVPEHLVKSITWQTLQAVN-FCHK---HNCIHRDVKPENILITKHSVIKLCDFGFAR  150 (311)
T ss_dssp             HHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             hHHHHHhhhcCCCHHHHHHHHHHHHHHHH-HHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCch
Confidence            99999987788999999999999999999 9999   899999999999    78899999999986

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.84  E-value=1.1e-20  Score=194.76  Aligned_cols=136  Identities=15%  Similarity=0.220  Sum_probs=118.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||||.+...  ......++.+|+..+  + +||||+++++++.+.+..++||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   95 (289)
T 1x8b_A           16 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNG   95 (289)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             hhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCC
Confidence            47899999999999999878999999999764  233456777787763  4 999999999999999999999999999


Q ss_pred             CCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-------------------
Q 038969          613 GNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-------------------  665 (678)
Q Consensus       613 GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-------------------  665 (678)
                      |+|.+++...    ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    ..+                   
T Consensus        96 ~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~  171 (289)
T 1x8b_A           96 GSLADAISENYRIMSYFKEAELKDLLLQVGRGLR-YIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKV  171 (289)
T ss_dssp             CBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEC--------------------CC
T ss_pred             CcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHH-HHHh---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCce
Confidence            9999999753    66999999999999999999 9999   899999999999    222                   


Q ss_pred             cEEEEeeCCccc
Q 038969          666 IVKLITFSIIKN  677 (678)
Q Consensus       666 ~vkI~DFGlar~  677 (678)
                      .+||+|||+++.
T Consensus       172 ~~kl~Dfg~~~~  183 (289)
T 1x8b_A          172 MFKIGDLGHVTR  183 (289)
T ss_dssp             CEEECCCTTCEE
T ss_pred             EEEEcccccccc
Confidence            689999999863

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.84  E-value=1.2e-20  Score=196.01  Aligned_cols=135  Identities=15%  Similarity=0.208  Sum_probs=122.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||+|++...   .....+.+.+|+..  .++|+||+++++++...+..++||||+++
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   99 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRR   99 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCC
Confidence            47899999999999999878899999998654   23445678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       100 ~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  163 (294)
T 2rku_A          100 RSLLELHKRRKALTEPEARYYLRQIVLGCQ-YLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  163 (294)
T ss_dssp             CBHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCChHhEEEcCCCCEEEEeccCce
Confidence            999999987678999999999999999999 9999   899999999999    78899999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.84  E-value=1e-20  Score=202.17  Aligned_cols=135  Identities=22%  Similarity=0.279  Sum_probs=119.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++....   ....++|.+|+..  .++||||+++++++...+..+|||||++ 
T Consensus        59 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-  137 (348)
T 1u5q_A           59 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-  137 (348)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-
T ss_pred             eeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-
Confidence            368999999999999987789999999997542   2334678889887  4899999999999999999999999997 


Q ss_pred             CCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.. ...+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus       138 g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  203 (348)
T 1u5q_A          138 GSASDLLEVHKKPLQEVEIAAVTHGALQGLA-YLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASI  203 (348)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCcee
Confidence            688888853 367999999999999999999 9999   899999999999    889999999999863

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.84  E-value=8.3e-21  Score=206.87  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=113.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEc----CCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDE----DTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~----~~~~~LV~Ey~~  611 (678)
                      ++||+|+||.||++....+|+.||||++...     ..+.+|+..   ..+|+||+++++++..    ....+||||||+
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~  142 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD  142 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCC
Confidence            5799999999999999878999999999643     245556655   3789999999999865    567899999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      +|+|.+++...  ..+++.++..|+.|+++||+ |||+   .+|+||||||+|    .   ++.+||+|||+|+.
T Consensus       143 gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~  213 (400)
T 1nxk_A          143 GGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ-YLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  213 (400)
T ss_dssp             SEEHHHHHHCC---CCBHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             CCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCcCcceEEEecCCCCccEEEEecccccc
Confidence            99999999865  46999999999999999999 9999   899999999999    3   68899999999874

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.83  E-value=1.1e-20  Score=198.50  Aligned_cols=134  Identities=21%  Similarity=0.306  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+.. +|+.||+|++.....  ...+.+.+|+.+  .++||||+++++++...+..++||||+++ 
T Consensus        26 ~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-  103 (311)
T 3niz_A           26 LEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-  103 (311)
T ss_dssp             EEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCSE-
T ss_pred             hhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCCC-
Confidence            378999999999999986 799999999975432  234677888887  48999999999999999999999999984 


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  168 (311)
T 3niz_A          104 DLKKVLDENKTGLQDSQIKIYLYQLLRGVA-HCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARA  168 (311)
T ss_dssp             EHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             CHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCchHhEEECCCCCEEEccCcCcee
Confidence            888888764 56999999999999999999 9999   899999999999    788999999999863

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.83  E-value=1.3e-20  Score=200.16  Aligned_cols=135  Identities=15%  Similarity=0.208  Sum_probs=122.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||++....+++.||+|++...   .....+.+.+|+.+  .++|+||+++++++.+.+..++||||+++
T Consensus        46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  125 (335)
T 2owb_A           46 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRR  125 (335)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCC
Confidence            47899999999999999878899999998754   23445678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       126 ~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  189 (335)
T 2owb_A          126 RSLLELHKRRKALTEPEARYYLRQIVLGCQ-YLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  189 (335)
T ss_dssp             CBHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CCHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCCEecCCCchhEEEcCCCCEEEeeccCce
Confidence            999999987678999999999999999999 9999   899999999999    77899999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.83  E-value=1.1e-20  Score=197.37  Aligned_cols=135  Identities=16%  Similarity=0.269  Sum_probs=119.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+++...+|+.||+|.+........+.+.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   93 (304)
T 2jam_A           14 MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL   93 (304)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             eeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccH
Confidence            4789999999999999987899999999987654455678888877  48999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      .+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|       +++.+||+|||+++
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~  157 (304)
T 2jam_A           94 FDRILERGVYTEKDASLVIQQVLSAVK-YLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSK  157 (304)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence            999976678999999999999999999 9999   899999999999       46789999999986

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.83  E-value=6.2e-21  Score=202.80  Aligned_cols=144  Identities=18%  Similarity=0.332  Sum_probs=120.8

Q ss_pred             hHHHHHhhh--hhhcccCCceEEEEEEEccCCEEEEEEEeccC-----chhhHHHHHHHHHH--hcCCCCcccEEEEEEc
Q 038969          529 DVAKITNNF--EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-----SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE  599 (678)
Q Consensus       529 el~~~t~~f--~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-----~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~  599 (678)
                      ++....+.|  .+.||+|+||.||+|....+++.||+|++...     .....+.+.+|+.+  .++||||+++++++.+
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            344444455  47899999999999999878999999998653     23345678889888  4899999999999999


Q ss_pred             CCeeEEEEecCCCCCHHHhhcC----------------------------------------CCCCCHHHHHHHHHHHHH
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSG----------------------------------------ANTLTWEARLRIATEAAQ  639 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~----------------------------------------~~~l~~~~~l~ia~~ia~  639 (678)
                      .+..++||||+++|+|.+++..                                        ...+++..+..|+.|+++
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  179 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS  179 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999852                                        012367788999999999


Q ss_pred             HHHHhHhcCCCCCccccCCCCCC----CCC--cEEEEeeCCcc
Q 038969          640 GSHSAFDQGCCPHICESSSSSNP----HKN--IVKLITFSIIK  676 (678)
Q Consensus       640 gL~~yLH~~~~~~iiHrDlk~~N----~~~--~vkI~DFGlar  676 (678)
                      ||+ |||+   .+|+||||||+|    .++  .+||+|||+|+
T Consensus       180 ~l~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~  218 (345)
T 3hko_A          180 ALH-YLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSK  218 (345)
T ss_dssp             HHH-HHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCE
T ss_pred             HHH-HHHH---CCccccCCChhhEEEecCCCceEEEeeccccc
Confidence            999 9999   899999999999    344  89999999986

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=193.72  Aligned_cols=135  Identities=19%  Similarity=0.323  Sum_probs=121.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....   ...+.+.+|+..  .++||||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   95 (278)
T 3cok_A           16 GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHN   95 (278)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCC
Confidence            4789999999999999877899999999965421   224678888887  48999999999999999999999999999


Q ss_pred             CCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        96 ~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~  160 (278)
T 3cok_A           96 GEMNRYLKNRVKPFSENEARHFMHQIITGML-YLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLAT  160 (278)
T ss_dssp             EEHHHHHHTCSSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSSCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CcHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCCEEEEeeccee
Confidence            9999999865 67999999999999999999 9999   899999999999    78899999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.83  E-value=6.6e-21  Score=208.97  Aligned_cols=135  Identities=16%  Similarity=0.253  Sum_probs=116.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||||++.....        .....+.+|+.+  .++||||+++++++.. +..++||
T Consensus       140 ~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~lv~  218 (419)
T 3i6u_A          140 SKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-EDYYIVL  218 (419)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-SEEEEEE
T ss_pred             EeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-CceEEEE
Confidence            4789999999999999988899999999975321        122347788877  4899999999999854 5689999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      |||++|+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|       +...+||+|||+|+.
T Consensus       219 e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~  291 (419)
T 3i6u_A          219 ELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQ-YLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  291 (419)
T ss_dssp             ECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTS
T ss_pred             EcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCChHhEEEecCCCcceEEEeeccccee
Confidence            99999999999988788999999999999999999 9999   899999999999       234699999999873

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.83  E-value=5.6e-21  Score=216.10  Aligned_cols=134  Identities=24%  Similarity=0.394  Sum_probs=119.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|.+. .+..||||+++... ...++|.+|+.+  .++|+||+++++++.+ +..+||||||++|+
T Consensus       271 ~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gs  347 (535)
T 2h8h_A          271 LEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGS  347 (535)
T ss_dssp             EEEEEEECSSEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEE
T ss_pred             hheecccCCCeEEEEEEEC-CCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCc
Confidence            3578999999999999987 67889999998654 235678999888  4999999999999876 67899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.++|+..  ..+++.+++.|+.||++||+ |||+   .+||||||||+|    +++.+||+|||+++.
T Consensus       348 L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          348 LLDFLKGETGKYLRLPQLVDMAAQIASGMA-YVER---MNYVHRDLRAANILVGENLVCKVADFGLARL  412 (535)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTT
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCCHhhEEEcCCCcEEEccccccee
Confidence            99999753  56999999999999999999 9999   899999999999    778999999999873

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.83  E-value=1.6e-20  Score=192.91  Aligned_cols=135  Identities=17%  Similarity=0.260  Sum_probs=122.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||||++.... ....+.+.+|+..  .++|+||+++++++.+.+..++||||+++|+
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   91 (276)
T 2yex_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (276)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCc
Confidence            478999999999999998789999999997543 2345678888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        92 L~~~l~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  153 (276)
T 2yex_A           92 LFDRIEPDIGMPEPDAQRFFHQLMAGVV-YLHG---IGITHRDIKPENLLLDERDNLKISDFGLAT  153 (276)
T ss_dssp             GGGGSBTTTBCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCChHHEEEccCCCEEEeeCCCcc
Confidence            9999987778999999999999999999 9999   899999999999    77899999999986

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.83  E-value=1.6e-20  Score=194.73  Aligned_cols=135  Identities=19%  Similarity=0.276  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc----CCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE----DTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~----~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....++..||+|.+...  .....+.+.+|+..+  ++||||+++++++..    ....++||||
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~  110 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL  110 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEe
Confidence            46799999999999999878899999999754  334567788898883  899999999999865    4568999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++.....+++..++.++.|+++||+ |||+   .+  |+||||||+|     +++.+||+|||+|+
T Consensus       111 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~  180 (290)
T 1t4h_A          111 MTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQ-FLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             cCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHH-HHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence            999999999987678999999999999999999 9999   56  9999999999     57899999999985

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.83  E-value=6.3e-21  Score=219.74  Aligned_cols=133  Identities=20%  Similarity=0.358  Sum_probs=117.9

Q ss_pred             hhcccCCceEEEEEEEc--cCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLE--FNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|.+.  ..++.||||+++...  ....++|.+|+.+  .++|+|||+++++|.. +..+||||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            47999999999999653  356789999997643  2346789999888  4899999999999965 568899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.+++.|+.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~-yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~  517 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMK-YLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK  517 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHH
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCcc
Confidence            999999987788999999999999999999 9999   899999999999    78899999999986

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=198.13  Aligned_cols=135  Identities=21%  Similarity=0.276  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEE----cCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCD----EDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~----~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+++...+|+.||||++........+.+.+|+..  .++||||+++++++.    .....++||||++
T Consensus        34 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~  113 (317)
T 2buj_A           34 IQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFK  113 (317)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCT
T ss_pred             EEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCC
Confidence            4789999999999999977899999999977666667788899887  489999999999986    3457899999999


Q ss_pred             CCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++..    ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       114 ~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~  182 (317)
T 2buj_A          114 RGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE-AIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMN  182 (317)
T ss_dssp             TCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcch
Confidence            9999999874    367999999999999999999 9999   899999999999    78899999999875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.83  E-value=1.7e-20  Score=193.64  Aligned_cols=135  Identities=17%  Similarity=0.276  Sum_probs=120.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||+|++...  .....+.+.+|+.+  .++|+||+++++++...+..++||||+++|
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   90 (284)
T 3kk8_A           11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG   90 (284)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCC
Confidence            47899999999999999878999999999754  33445678888877  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|    .   ...+||+|||+++
T Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~  156 (284)
T 3kk8_A           91 ELFEDIVAREFYSEADASHCIQQILESIA-YCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAI  156 (284)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeE
Confidence            99999987778999999999999999999 9999   899999999999    3   3449999999985

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.83  E-value=4.9e-21  Score=198.13  Aligned_cols=134  Identities=25%  Similarity=0.424  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|.....+..||+|.+.... ...+++.+|+..  .++|+||+++++++...+..++||||+++|+|
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   96 (288)
T 3kfa_A           18 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL   96 (288)
T ss_dssp             EEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEH
T ss_pred             EeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcH
Confidence            478999999999999998779999999997643 345678888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  159 (288)
T 3kfa_A           97 LDYLRECNRQEVSAVVLLYMATQISSAME-YLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSR  159 (288)
T ss_dssp             HHHHHHCCTTTSCHHHHHHHHHHHHHHHH-HHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGG
T ss_pred             HHHHHhcccCCccHhHHHHHHHHHHHHHH-HHHH---CCccCCCCCcceEEEcCCCCEEEccCccce
Confidence            9999753  56999999999999999999 9999   899999999999    77889999999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.83  E-value=1.9e-20  Score=193.19  Aligned_cols=135  Identities=24%  Similarity=0.357  Sum_probs=121.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+++...+|+.||+|.+.....      ...+++.+|+..  .++||||+++++++...+..++||||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   89 (283)
T 3bhy_A           10 GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILEL   89 (283)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             HHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEee
Confidence            4789999999999999987899999999875421      135778889887  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC----cEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN----IVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~----~vkI~DFGlar  676 (678)
                      +++++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++    .+||+|||+++
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           90 VSGGELFDFLAEKESLTEDEATQFLKQILDGVH-YLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            999999999986678999999999999999999 9999   899999999999    333    79999999986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.83  E-value=1.4e-20  Score=207.28  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=121.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+.+.+|+.+  .++|+||+++++++...     ...++|||
T Consensus        31 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  110 (432)
T 3n9x_A           31 KHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLE  110 (432)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEE
T ss_pred             EEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEe
Confidence            47899999999999999888999999999753  33455778899888  48999999999999765     57899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+. |+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       111 ~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~-~LH~---~givHrDlkp~NILl~~~~~~kL~DFGla~~  178 (432)
T 3n9x_A          111 IAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGEN-FIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGLART  178 (432)
T ss_dssp             CCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             cCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence            996 599999998788999999999999999999 9999   899999999999    788999999999973

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.83  E-value=1.4e-20  Score=195.98  Aligned_cols=135  Identities=27%  Similarity=0.432  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~E  608 (678)
                      .+.||+|+||.||+|++    ..+++.||||++.... ....+.+.+|+..  .++|+||+++++++...  ...++|||
T Consensus        26 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e  105 (302)
T 4e5w_A           26 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME  105 (302)
T ss_dssp             EEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEE
T ss_pred             hhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEE
Confidence            47899999999999984    4478999999997543 3345778888887  48999999999999876  66899999


Q ss_pred             cCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       106 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A          106 FLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD-YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             CCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             eCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHH-Hhhc---CCcccCCCchheEEEcCCCCEEECcccccc
Confidence            9999999999954 367999999999999999999 9999   899999999999    78899999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=205.80  Aligned_cols=136  Identities=21%  Similarity=0.310  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC--eeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT--NMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~--~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+.+  .++||||+++++++...+  ..++||||+++
T Consensus        14 ~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~   93 (396)
T 4eut_A           14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC   93 (396)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTT
T ss_pred             EEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCC
Confidence            478999999999999998779999999997643 2345677788877  489999999999998755  78999999999


Q ss_pred             CCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGlar~  677 (678)
                      |+|.+++...   ..+++.+++.++.|+++||+ |||+   .+|+||||||+|        ....+||+|||+|+.
T Consensus        94 g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~  165 (396)
T 4eut_A           94 GSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMN-HLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (396)
T ss_dssp             EEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred             CCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence            9999999864   33999999999999999999 9999   899999999999        334599999999863

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.83  E-value=1.7e-20  Score=198.97  Aligned_cols=135  Identities=25%  Similarity=0.452  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEc-------cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE-------FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-------~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .+.||+|+||.||+|...       .++..||||++.... ....+++.+|+..+  + +||||+++++++...+..++|
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  119 (334)
T 2pvf_A           40 GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI  119 (334)
T ss_dssp             EEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEE
T ss_pred             eeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEE
Confidence            478999999999999874       256789999997653 34456788888773  5 899999999999999999999


Q ss_pred             EecCCCCCHHHhhcCCC----------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGAN----------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~----------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      |||+++|+|.+++....                .+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.
T Consensus       120 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~  195 (334)
T 2pvf_A          120 VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGME-YLAS---QKCIHRDLAARNVLVTENNV  195 (334)
T ss_dssp             EECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCC
T ss_pred             EECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCccceEEEcCCCC
Confidence            99999999999997542                4899999999999999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+++
T Consensus       196 ~kL~Dfg~~~  205 (334)
T 2pvf_A          196 MKIADFGLAR  205 (334)
T ss_dssp             EEECCCTTCE
T ss_pred             EEEccccccc
Confidence            9999999986

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.83  E-value=1.1e-20  Score=194.80  Aligned_cols=135  Identities=21%  Similarity=0.282  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||||++....   ....+.+.+|+..  .++||||+++++++.+.+..++||||+++
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   93 (279)
T 3fdn_A           14 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPL   93 (279)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             eeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCC
Confidence            378999999999999998788899999996542   1234568888877  38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        94 ~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~  157 (279)
T 3fdn_A           94 GTVYRELQKLSKFDEQRTATYITELANALS-YCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSV  157 (279)
T ss_dssp             EEHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT---TTCEECCCCGGGEEECTTSCEEECSCCEES
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecccCChHhEEEcCCCCEEEEeccccc
Confidence            999999987678999999999999999999 9999   899999999999    88899999999875

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.83  E-value=1.3e-20  Score=201.85  Aligned_cols=135  Identities=17%  Similarity=0.219  Sum_probs=122.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++....+++.||+|++... .....+.+.+|+..  .++|+||+++++++...+..++||||+++|+
T Consensus        38 ~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  117 (360)
T 3eqc_A           38 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS  117 (360)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCB
T ss_pred             eeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCC
Confidence            36899999999999999878999999999765 33445678889887  3899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.....+++..+..++.|+++||+ |||+   . +|+||||||+|    .++.+||+|||+|+
T Consensus       118 L~~~l~~~~~~~~~~~~~i~~~i~~~l~-~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  180 (360)
T 3eqc_A          118 LDQVLKKAGRIPEQILGKVSIAVIKGLT-YLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  180 (360)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCCc
Confidence            9999987678999999999999999999 9998   5 79999999999    78899999999985

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=215.71  Aligned_cols=133  Identities=19%  Similarity=0.394  Sum_probs=118.1

Q ss_pred             hcccCCceEEEEEEEcc--CCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLEF--NGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|.+..  ++..||||+++... ....++|.+|+.++  ++|||||+++++|.. +..+||||||++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            69999999999998752  45689999998653 34567899999884  899999999999976 56899999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++... ..+++.+++.|+.||++||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus       422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          422 LHKFLVGKREEIPVSNVAELLHQVSMGMK-YLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTT
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCccc
Confidence            99999754 56999999999999999999 9999   899999999999    788999999999974

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.83  E-value=1.2e-20  Score=200.51  Aligned_cols=135  Identities=27%  Similarity=0.441  Sum_probs=116.3

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|...     ..++.||||++.... ....+.+.+|+..+  + +||||+++++++...+..++|||
T Consensus        50 ~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e  129 (344)
T 1rjb_A           50 GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFE  129 (344)
T ss_dssp             EEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEe
Confidence            478999999999999972     245689999997642 23446788888873  6 89999999999999999999999


Q ss_pred             cCCCCCHHHhhcCCC-----------------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          609 FMAKGNLEEHLSGAN-----------------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       609 y~~~GsL~~~L~~~~-----------------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      |+++|+|.+++....                       .+++.+++.++.|+++||+ |||+   .+|+||||||+|   
T Consensus       130 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIll  205 (344)
T 1rjb_A          130 YCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGME-FLEF---KSCVHRDLAARNVLV  205 (344)
T ss_dssp             CCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHH-HHHH---TTEEETTCSGGGEEE
T ss_pred             cCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCChhhEEE
Confidence            999999999997542                       3899999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       .++.+||+|||+|+
T Consensus       206 ~~~~~~kL~Dfg~~~  220 (344)
T 1rjb_A          206 THGKVVKICDFGLAR  220 (344)
T ss_dssp             ETTTEEEECCCGGGS
T ss_pred             cCCCcEEeCCCccCc
Confidence             78899999999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.83  E-value=1.1e-20  Score=198.97  Aligned_cols=135  Identities=20%  Similarity=0.302  Sum_probs=111.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+|+.||||.++.... ...+.+.+|+..  .++||||+++++++...+..++||||++ |+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~   88 (317)
T 2pmi_A           10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-ND   88 (317)
T ss_dssp             ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CB
T ss_pred             eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CC
Confidence            3689999999999999887899999999976432 234677888887  3899999999999999999999999998 69


Q ss_pred             HHHhhcCC------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...      ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        89 L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~-~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  157 (317)
T 2pmi_A           89 LKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLA-FCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARA  157 (317)
T ss_dssp             HHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred             HHHHHHhccccccccCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence            99998642      46999999999999999999 9999   899999999999    788999999999863

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.83  E-value=1e-20  Score=197.90  Aligned_cols=137  Identities=25%  Similarity=0.396  Sum_probs=120.0

Q ss_pred             hhhhcccCCceEEEEEEE-----ccCCEEEEEEEeccCch-hhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSV-QGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||+|+.     ..+++.||||++..... ...+.+.+|+..+  + +||||+++++++...+..++||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~  106 (313)
T 1t46_A           27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (313)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEE
Confidence            347899999999999985     23567999999976533 4457788898873  6 8999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCC------------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          608 EFMAKGNLEEHLSGAN------------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~------------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      ||+++|+|.+++....                  .+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++
T Consensus       107 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~  182 (313)
T 1t46_A          107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA-FLAS---KNCIHRDLAARNILLTHGR  182 (313)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEETTT
T ss_pred             ecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCccceEEEcCCC
Confidence            9999999999997532                  4899999999999999999 9999   899999999999    888


Q ss_pred             cEEEEeeCCccc
Q 038969          666 IVKLITFSIIKN  677 (678)
Q Consensus       666 ~vkI~DFGlar~  677 (678)
                      .+||+|||+++.
T Consensus       183 ~~kl~Dfg~~~~  194 (313)
T 1t46_A          183 ITKICDFGLARD  194 (313)
T ss_dssp             EEEECCCGGGSC
T ss_pred             CEEEcccccccc
Confidence            999999999863

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.83  E-value=1.4e-20  Score=199.80  Aligned_cols=136  Identities=24%  Similarity=0.359  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccC----CEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN----GTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~----g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+    +..||||.+.... .....+|.+|+..  .++||||+++++++...+..+|||||+
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  128 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM  128 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCC
Confidence            36899999999999987533    2469999997653 3445678889887  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus       129 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          129 ENGALDKFLREKDGEFSVLQLVGMLRGIAAGMK-YLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             TTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCCChheEEECCCCcEEECCCCcchh
Confidence            999999999754 67999999999999999999 9999   899999999999    788999999999863

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.83  E-value=1.3e-20  Score=199.07  Aligned_cols=135  Identities=23%  Similarity=0.340  Sum_probs=121.2

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEE--cCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCD--EDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~--~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.    ..+++.||||++........+.+.+|+.+  .++|+||+++++++.  .....++||||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~  107 (327)
T 3lxl_A           28 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEY  107 (327)
T ss_dssp             EEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEEC
T ss_pred             hhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEee
Confidence            47899999999999984    44788999999988776667789999888  489999999999987  45678999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++... ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  175 (327)
T 3lxl_A          108 LPSGCLRDFLQRHRARLDASRLLLYSSQICKGME-YLGS---RRCVHRDLAARNILVESEAHVKIADFGLAK  175 (327)
T ss_dssp             CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred             cCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCChhhEEECCCCCEEEcccccce
Confidence            9999999999753 56999999999999999999 9999   899999999999    78899999999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.83  E-value=1.4e-20  Score=210.76  Aligned_cols=135  Identities=17%  Similarity=0.299  Sum_probs=117.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...++..||||++....  ......+.+|+.+  .++||||+++++++...+..++|||||++|
T Consensus        42 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g  121 (494)
T 3lij_A           42 VKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGG  121 (494)
T ss_dssp             EEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSC
T ss_pred             eeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCC
Confidence            478999999999999998789999999997643  2335678889888  389999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.++..|+.|+++||+ |||+   .+|+||||||+|       ....+||+|||+|+
T Consensus       122 ~L~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          122 ELFDEIIHRMKFNEVDAAVIIKQVLSGVT-YLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence            99999987678999999999999999999 9999   899999999999       24569999999986

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.83  E-value=9.8e-21  Score=200.34  Aligned_cols=134  Identities=26%  Similarity=0.396  Sum_probs=112.4

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|+...+++    .||+|.+... .....++|.+|+..  .++||||++++++|.... .++|+||+
T Consensus        20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~e~~   98 (327)
T 3poz_A           20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLM   98 (327)
T ss_dssp             EEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEEECC
T ss_pred             ceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEEEec
Confidence            4789999999999999865555    4688888654 33456788899888  499999999999998754 78999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++..++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        99 ~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           99 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN-YLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             TTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHhh---CCeeCCCCChheEEECCCCCEEEccCccee
Confidence            999999999763 67999999999999999999 9999   899999999999    77899999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.83  E-value=1.8e-20  Score=209.29  Aligned_cols=135  Identities=21%  Similarity=0.348  Sum_probs=122.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+|+.||||++....   ....+.+.+|+.++  ++||||+++++++...+..++||||+++
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  110 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTG  110 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            478999999999999998889999999996542   33467788998884  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.+++.|+.|+++||+ |||+   .+|+||||||+|       .++.+||+|||+|+
T Consensus       111 ~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          111 GELFDEIISRKRFSEVDAARIIRQVLSGIT-YMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             CBHHHHHHTCSCCBHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence            999999988888999999999999999999 9999   899999999999       46789999999886

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=194.27  Aligned_cols=134  Identities=19%  Similarity=0.289  Sum_probs=119.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCHH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLE  616 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~  616 (678)
                      .+||+|+||.||+|....+++.||||.+........+.+.+|+..  .++||||+++++++...+..++||||+++|+|.
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  107 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLS  107 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHH
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHH
Confidence            489999999999999987889999999987665556778888887  389999999999999999999999999999999


Q ss_pred             HhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-CCcEEEEeeCCcc
Q 038969          617 EHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-KNIVKLITFSIIK  676 (678)
Q Consensus       617 ~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-~~~vkI~DFGlar  676 (678)
                      +++...   ..+++..+..++.|+++||+ |||+   .+|+||||||+|    . ++.+||+|||+++
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A          108 ALLRSKWGPLKDNEQTIGFYTKQILEGLK-YLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             HHHHHTTCCCTTCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHHHHHH-HHHh---CCEEccCCChhhEEEECCCCCEEEeeccccc
Confidence            999753   35779999999999999999 9999   899999999999    3 8899999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.83  E-value=1.6e-20  Score=191.85  Aligned_cols=133  Identities=24%  Similarity=0.435  Sum_probs=120.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|... +++.||+|.+..... ..+++.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (267)
T 3t9t_A           13 VQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCL   90 (267)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBH
T ss_pred             eeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcH
Confidence            478999999999999987 788999999986542 34678888887  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~  152 (267)
T 3t9t_A           91 SDYLRTQRGLFAAETLLGMCLDVCEGMA-YLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTR  152 (267)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGG
T ss_pred             HHHHhhCcccCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCchheEEECCCCCEEEccccccc
Confidence            9999754 56899999999999999999 9999   899999999999    77889999999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.83  E-value=2.1e-20  Score=196.08  Aligned_cols=135  Identities=16%  Similarity=0.235  Sum_probs=121.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||+|++....   ....+.+.+|+..  .++||||+++++++...+..++||||+++
T Consensus        39 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  118 (309)
T 2h34_A           39 RRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLING  118 (309)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCC
Confidence            478999999999999998789999999997642   2234678888888  38999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       119 ~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~  182 (309)
T 2h34_A          119 VDLAAMLRRQGPLAPPRAVAIVRQIGSALD-AAHA---AGATHRDVKPENILVSADDFAYLVDFGIAS  182 (309)
T ss_dssp             EEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECSCCC--
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CcCCcCCCChHHEEEcCCCCEEEecCccCc
Confidence            999999987678999999999999999999 9999   899999999999    78899999999876

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.83  E-value=1.8e-20  Score=194.29  Aligned_cols=133  Identities=16%  Similarity=0.241  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+.. +|+.||||++.....  ...+.+.+|+.+  .++||||+++++++...+..++||||+++ 
T Consensus         7 ~~~lg~G~~g~V~~~~~~-~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   84 (288)
T 1ob3_A            7 LEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-   84 (288)
T ss_dssp             EEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-
T ss_pred             hhhcccCCCEEEEEEEcC-CCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-
Confidence            468999999999999985 789999999975432  224678888888  48999999999999999999999999985 


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (288)
T 1ob3_A           85 DLKKLLDVCEGGLESVTAKSFLLQLLNGIA-YCHD---RRVLHRDLKPQNLLINREGELKIADFGLAR  148 (288)
T ss_dssp             EHHHHHHTSTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             CHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHEEEcCCCCEEEeECcccc
Confidence            999999764 67999999999999999999 9999   899999999999    78899999999885

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.83  E-value=9.3e-21  Score=199.64  Aligned_cols=135  Identities=24%  Similarity=0.379  Sum_probs=109.8

Q ss_pred             hhhcccCCceEEEEEEEccCCE---EEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCee------E
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT---QVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNM------G  604 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~---~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~------~  604 (678)
                      .+.||+|+||.||+|....++.   .||||+++..  .....++|.+|+..+  ++||||+++++++......      +
T Consensus        28 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~  107 (323)
T 3qup_A           28 GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPM  107 (323)
T ss_dssp             EEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEE
T ss_pred             eceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccE
Confidence            4789999999999998764443   7999999764  334567889998883  8999999999999876655      9


Q ss_pred             EEEecCCCCCHHHhhcCC------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          605 LIYEFMAKGNLEEHLSGA------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      +||||+++|+|.+++...      ..+++.++++|+.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+
T Consensus       108 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~-~LH~---~~ivH~Dikp~NIli~~~~~~kl~Dfg~  183 (323)
T 3qup_A          108 VILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGME-YLSS---RNFIHRDLAARNCMLAEDMTVCVADFGL  183 (323)
T ss_dssp             EEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHH-HHHc---CCcccCCCCcceEEEcCCCCEEEeeccc
Confidence            999999999999999632      26999999999999999999 9999   899999999999    788999999999


Q ss_pred             cc
Q 038969          675 IK  676 (678)
Q Consensus       675 ar  676 (678)
                      |+
T Consensus       184 a~  185 (323)
T 3qup_A          184 SR  185 (323)
T ss_dssp             --
T ss_pred             cc
Confidence            86

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.83  E-value=3.2e-20  Score=192.99  Aligned_cols=135  Identities=20%  Similarity=0.242  Sum_probs=120.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---------hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---------VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---------~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~L  605 (678)
                      .+.||+|+||.||+|....+|+.||||.+....         ....+.+.+|+.++  + .||||+++++++...+..++
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (298)
T 1phk_A           22 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFL  101 (298)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             eeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEE
Confidence            378999999999999998789999999997542         12245677887773  5 59999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       102 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  172 (298)
T 1phk_A          102 VFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVIC-ALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSC  172 (298)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCcceEEEcCCCcEEEecccchh
Confidence            9999999999999987678999999999999999999 9999   899999999999    78899999999986

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.83  E-value=2e-20  Score=210.92  Aligned_cols=135  Identities=19%  Similarity=0.343  Sum_probs=120.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      ++||+|+||.||+|+.+.+|+.||||++.....   ...+.+.+|+.+  .++||||+++++++...+..++||||+++|
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg  270 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGG  270 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTC
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCC
Confidence            689999999999999987899999999975422   234667788777  489999999999999999999999999999


Q ss_pred             CHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++...    ..+++..++.++.||+.||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       271 ~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~-~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFGla~~  338 (543)
T 3c4z_A          271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLE-HLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVE  338 (543)
T ss_dssp             BHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CHHHHHHHhhcccccccHHHHHHHHHHHHHHHH-HHHH---cCCcccCCChHHEEEeCCCCEEEeecceeee
Confidence            999999753    46999999999999999999 9999   899999999999    788999999999873

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.83  E-value=1.6e-20  Score=209.92  Aligned_cols=136  Identities=18%  Similarity=0.291  Sum_probs=121.9

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.+.||+|+||.||+|+...+++.||||++....  ......+.+|+.+  .++||||+++++++......++||||+++
T Consensus        26 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  105 (486)
T 3mwu_A           26 IVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG  105 (486)
T ss_dssp             EEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCC
Confidence            3578999999999999998789999999996532  2345678888887  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|       ..+.+||+|||+|+
T Consensus       106 ~~L~~~~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  172 (486)
T 3mwu_A          106 GELFDEIIKRKRFSEHDAARIIKQVFSGIT-YMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (486)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence            999999977678999999999999999999 9999   899999999999       34579999999986

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.83  E-value=2.4e-20  Score=192.96  Aligned_cols=134  Identities=29%  Similarity=0.503  Sum_probs=114.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-------HHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-------YKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-------~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+++.||||++.......       .+++.+|+..+  ++|+||+++++++.+..  ++|||
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~e  101 (287)
T 4f0f_A           24 EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVME  101 (287)
T ss_dssp             EEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEEE
T ss_pred             hhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--eEEEE
Confidence            478999999999999998789999999986542211       16788888883  89999999999986554  79999


Q ss_pred             cCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC----CCCc-----EEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP----HKNI-----VKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N----~~~~-----vkI~DFGlar  676 (678)
                      |+++|+|.+++... ..+++..++.++.|+++||+ |||+   .+  |+||||||+|    ..+.     +||+|||+|+
T Consensus       102 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~lH~---~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A          102 FVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIE-YMQN---QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             CCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHH-HHHT---SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             ecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHH-HHHh---CCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence            99999999988654 57999999999999999999 9999   66  9999999999    4444     9999999987


Q ss_pred             c
Q 038969          677 N  677 (678)
Q Consensus       677 ~  677 (678)
                      .
T Consensus       178 ~  178 (287)
T 4f0f_A          178 Q  178 (287)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.83  E-value=2.2e-20  Score=199.03  Aligned_cols=134  Identities=21%  Similarity=0.298  Sum_probs=119.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCC--CCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHH--KNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H--~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||++... +++.||||++...  .....+.|.+|+..+  ++|  +||+++++++...+..+|||| +.
T Consensus        14 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~   91 (343)
T 3dbq_A           14 LKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG   91 (343)
T ss_dssp             EEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CC
T ss_pred             EEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CC
Confidence            478999999999999886 7899999998754  334557788898873  554  999999999999999999999 56


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.++..++.|+++||+ |||+   .+|+||||||+|   .++.+||+|||+|+.
T Consensus        92 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~iiHrDikp~NIll~~~~~kl~DFG~a~~  156 (343)
T 3dbq_A           92 NIDLNSWLKKKKSIDPWERKSYWKNMLEAVH-TIHQ---HGIVHSDLKPANFLIVDGMLKLIDFGIANQ  156 (343)
T ss_dssp             SEEHHHHHHHSCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEEETTEEEECCCSSSCC
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCcceEEEECCcEEEeecccccc
Confidence            8899999988788999999999999999999 9999   899999999999   778899999999863

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.83  E-value=1.3e-20  Score=199.56  Aligned_cols=134  Identities=15%  Similarity=0.248  Sum_probs=115.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+++.||||++.....  ...+.+.+|+.+  .++||||+++++++...+..+|||||++ |
T Consensus        39 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  117 (329)
T 3gbz_A           39 ITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-N  117 (329)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred             EEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-C
Confidence            3789999999999999988899999999976532  224567788887  4899999999999999999999999998 5


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---------CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---------HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---------~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.+++.|+.|+++||+ |||+   .+|+||||||+|         +...+||+|||+|+
T Consensus       118 ~L~~~~~~~~~~~~~~~~~i~~ql~~~l~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~  185 (329)
T 3gbz_A          118 DLKKYMDKNPDVSMRVIKSFLYQLINGVN-FCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR  185 (329)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred             CHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence            99999987778999999999999999999 9999   899999999999         23349999999885

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.83  E-value=2e-20  Score=197.59  Aligned_cols=135  Identities=25%  Similarity=0.488  Sum_probs=117.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEE--EEEEeccC-chhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQV--AVKMLSAS-SVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~V--AVK~l~~~-~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+...+|..+  |||.+... .....+.+.+|+..+  + +||||+++++++...+..++||||++
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~  109 (327)
T 1fvr_A           30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP  109 (327)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             eeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCC
Confidence            478999999999999988778755  99998754 233456788888873  6 89999999999999999999999999


Q ss_pred             CCCHHHhhcCCC----------------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEe
Q 038969          612 KGNLEEHLSGAN----------------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLIT  671 (678)
Q Consensus       612 ~GsL~~~L~~~~----------------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~D  671 (678)
                      +|+|.+++....                .+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|
T Consensus       110 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~NIl~~~~~~~kL~D  185 (327)
T 1fvr_A          110 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMD-YLSQ---KQFIHRDLAARNILVGENYVAKIAD  185 (327)
T ss_dssp             TCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECGGGCEEECC
T ss_pred             CCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCccceEEEcCCCeEEEcc
Confidence            999999997643                6999999999999999999 9999   899999999999    777999999


Q ss_pred             eCCcc
Q 038969          672 FSIIK  676 (678)
Q Consensus       672 FGlar  676 (678)
                      ||+++
T Consensus       186 fg~~~  190 (327)
T 1fvr_A          186 FGLSR  190 (327)
T ss_dssp             TTCEE
T ss_pred             cCcCc
Confidence            99986

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.83  E-value=1.6e-20  Score=202.71  Aligned_cols=135  Identities=26%  Similarity=0.420  Sum_probs=113.9

Q ss_pred             hhhcccCCceEEEEEEEccC-C--EEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-G--TQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-g--~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+ +  ..||||.++.. .....++|.+|+.+  .++||||++++++|.+ .+..++||||+
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~  173 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  173 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECC
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECC
Confidence            47899999999999987532 2  46899998754 33456789999887  3899999999999854 56789999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus       174 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~  240 (373)
T 3c1x_A          174 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMK-FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLAR  240 (373)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             CCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCEecCccchheEEECCCCCEEEeeccccc
Confidence            999999999865 56899999999999999999 9999   899999999999    77899999999987

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.83  E-value=1.9e-20  Score=198.27  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=116.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....  .+++.+|+.+  .+ +|+||+++++++...+..++||||+ +|+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~   90 (330)
T 2izr_A           14 GKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPS   90 (330)
T ss_dssp             EEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCC
Confidence            4789999999999999877899999999875432  2356777766  36 9999999999999999999999999 999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc-----EEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI-----VKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~-----vkI~DFGlar~  677 (678)
                      |.+++... ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.     +||+|||+|+.
T Consensus        91 L~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           91 LEDLFDLCDRTFSLKTVLMIAIQLISRME-YVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            99999853 68999999999999999999 9999   899999999999    4444     99999999873

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.83  E-value=1.5e-20  Score=195.73  Aligned_cols=135  Identities=17%  Similarity=0.287  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+++.||+|.+........+.+.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l  103 (302)
T 2j7t_A           24 VGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAV  103 (302)
T ss_dssp             EEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEH
T ss_pred             cceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcH
Confidence            4689999999999999987799999999987666667788889887  48999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  165 (302)
T 2j7t_A          104 DAIMLELDRGLTEPQIQVVCRQMLEALN-FLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSA  165 (302)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHH
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCc
Confidence            999864 367999999999999999999 9999   899999999999    78899999999864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.83  E-value=2e-20  Score=193.21  Aligned_cols=135  Identities=19%  Similarity=0.277  Sum_probs=112.3

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....   .+..||+|.+.... ....+.|.+|+..  .++||||+++++++. .+..++||||++
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~   98 (281)
T 1mp8_A           20 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCT   98 (281)
T ss_dssp             EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             EeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecCC
Confidence            4789999999999999853   34579999987643 3445678888887  389999999999984 567899999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           99 LGELRSFLQVRKYSLDLASLILYAYQLSTALA-YLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             TEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecccccHHHEEECCCCCEEECccccccc
Confidence            99999999754 47999999999999999999 9999   899999999999    788999999999863

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.83  E-value=1.5e-20  Score=199.54  Aligned_cols=134  Identities=15%  Similarity=0.210  Sum_probs=111.5

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc--------hhhHHHHHHHHHHh--c---------CCCCcccEEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--------VQGYKQFQAEVQYI--V---------HHKNLTTLVGYC  597 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--------~~~~~~f~~Ev~~~--l---------~H~NIv~l~g~~  597 (678)
                      +.+.||+|+||.||+|+.  +|+.||||++....        ....+.+.+|+.++  +         .|+|||++.+.+
T Consensus        24 ~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~  101 (336)
T 2vuw_A           24 RCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVH  101 (336)
T ss_dssp             TCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEE
T ss_pred             heeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhccee
Confidence            347899999999999987  68999999997642        12346777887762  3         489999988875


Q ss_pred             E------------------------------cCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHh-
Q 038969          598 D------------------------------EDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFD-  646 (678)
Q Consensus       598 ~------------------------------~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH-  646 (678)
                      .                              ..+..+|||||+++|++.+.+.+ ..+++.+++.|+.|+++||+ ||| 
T Consensus       102 ~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-~~~~~~~~~~i~~qi~~aL~-~lH~  179 (336)
T 2vuw_A          102 CVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-KLSSLATAKSILHQLTASLA-VAEA  179 (336)
T ss_dssp             EEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-TCCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred             EecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-cCCCHHHHHHHHHHHHHHHH-HHHH
Confidence            3                              26789999999999987777754 57899999999999999999 999 


Q ss_pred             cCCCCCccccCCCCCC----CCC--------------------cEEEEeeCCccc
Q 038969          647 QGCCPHICESSSSSNP----HKN--------------------IVKLITFSIIKN  677 (678)
Q Consensus       647 ~~~~~~iiHrDlk~~N----~~~--------------------~vkI~DFGlar~  677 (678)
                      +   .+|+||||||+|    .++                    .+||+|||+|+.
T Consensus       180 ~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~  231 (336)
T 2vuw_A          180 S---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRL  231 (336)
T ss_dssp             H---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBE
T ss_pred             h---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEe
Confidence            8   889999999999    443                    899999999973

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.83  E-value=2.4e-20  Score=193.69  Aligned_cols=135  Identities=24%  Similarity=0.385  Sum_probs=117.6

Q ss_pred             hhhcccCCceEEEEEEEccCC---EEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCee-EEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNM-GLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g---~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~-~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....++   ..||+|.+.... ....+.|.+|+..  .++||||+++++++...+.. ++||||+
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~  105 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYM  105 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCC
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecc
Confidence            378999999999999875333   379999997643 3456778889887  38999999999999766554 9999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus       106 ~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  172 (298)
T 3pls_A          106 CHGDLLQFIRSPQRNPTVKDLISFGLQVARGME-YLAE---QKFVHRDLAARNCMLDESFTVKVADFGLAR  172 (298)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSC
T ss_pred             cCCCHHHHHhccccCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCcc
Confidence            999999999864 67899999999999999999 9999   899999999999    77899999999986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.82  E-value=3e-20  Score=196.78  Aligned_cols=135  Identities=21%  Similarity=0.298  Sum_probs=120.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...+|+.||||++....  ....+.+.+|+..  .++||||+++++++...+..++||||++++
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  109 (331)
T 4aaa_A           30 LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHT  109 (331)
T ss_dssp             EEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcc
Confidence            368999999999999998779999999986543  2334567788877  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  172 (331)
T 4aaa_A          110 ILDDLELFPNGLDYQVVQKYLFQIINGIG-FCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFAR  172 (331)
T ss_dssp             HHHHHHHSTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             hHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHHH---CCEEccCcChheEEEcCCCcEEEEeCCCce
Confidence            99998877778999999999999999999 9999   899999999999    78899999999986

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.82  E-value=2.1e-20  Score=192.03  Aligned_cols=136  Identities=17%  Similarity=0.270  Sum_probs=122.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||||.+....   ....+.+.+|+..  .++|+||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   95 (276)
T 2h6d_A           16 GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSG   95 (276)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCC
Confidence            478999999999999998789999999997542   2235678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        96 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  160 (276)
T 2h6d_A           96 GELFDYICKHGRVEEMEARRLFQQILSAVD-YCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNM  160 (276)
T ss_dssp             CBHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGC
T ss_pred             CcHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCChhhEEECCCCCEEEeecccccc
Confidence            999999987678999999999999999999 9999   899999999999    788999999999863

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.82  E-value=1.2e-20  Score=218.96  Aligned_cols=136  Identities=20%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .++||+|+||.||+|+...+++.||||+++...   ....+.+..|..++   .+|++|+++++++.+.+..+|||||++
T Consensus       346 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~  425 (674)
T 3pfq_A          346 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN  425 (674)
T ss_dssp             EEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCC
T ss_pred             EEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcC
Confidence            478999999999999998788999999997532   22345566676663   479999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.||+.||+ |||+   .+||||||||+|    .++++||+|||+|+.
T Consensus       426 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGla~~  491 (674)
T 3pfq_A          426 GGDLMYHIQQVGRFKEPHAVFYAAEIAIGLF-FLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  491 (674)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TSEECCCCCSTTEEECSSSCEEECCCTTCEE
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeEeccCChhhEEEcCCCcEEEeecceeec
Confidence            9999999987678999999999999999999 9999   899999999999    888999999999974

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.82  E-value=2.9e-20  Score=190.55  Aligned_cols=135  Identities=28%  Similarity=0.491  Sum_probs=111.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch----hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV----QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~----~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|..  .|+.||||++.....    ...+.+.+|+..  .++||||+++++++...+..++||||++
T Consensus        12 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   89 (271)
T 3dtc_A           12 EEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFAR   89 (271)
T ss_dssp             EEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCT
T ss_pred             eeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCC
Confidence            47899999999999987  589999999875422    234678888877  4899999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C--------CCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H--------KNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~--------~~~vkI~DFGlar  676 (678)
                      +|+|.+++.. ..+++.+++.++.|+++||+ |||+....+|+||||||+|    .        .+.+||+|||+++
T Consensus        90 ~~~L~~~~~~-~~~~~~~~~~i~~~l~~~l~-~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~  164 (271)
T 3dtc_A           90 GGPLNRVLSG-KRIPPDILVNWAVQIARGMN-YLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR  164 (271)
T ss_dssp             TEEHHHHHTS-SCCCHHHHHHHHHHHHHHHH-HHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--
T ss_pred             CCCHHHHhhc-CCCCHHHHHHHHHHHHHHHH-HHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccc
Confidence            9999999975 57999999999999999999 9999322239999999999    2        6779999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.82  E-value=4e-20  Score=193.76  Aligned_cols=133  Identities=18%  Similarity=0.238  Sum_probs=114.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEE--------------cCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCD--------------EDT  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~--------------~~~  601 (678)
                      .+.||+|+||.||+|....+|+.||||++........+++.+|+..  .++||||+++++++.              +..
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~   95 (320)
T 2i6l_A           16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELN   95 (320)
T ss_dssp             EEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCS
T ss_pred             EEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccC
Confidence            3689999999999999987799999999987776677888999888  389999999999873              346


Q ss_pred             eeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          602 NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       602 ~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      ..++||||++ |+|.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|     +++.+||+|||+++
T Consensus        96 ~~~lv~e~~~-~~L~~~~~~-~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~  169 (320)
T 2i6l_A           96 SVYIVQEYME-TDLANVLEQ-GPLLEEHARLFMYQLLRGLK-YIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLAR  169 (320)
T ss_dssp             EEEEEEECCS-EEHHHHHTT-CCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCSGGGEEEETTTTEEEECCCTTCB
T ss_pred             ceeEEeeccC-CCHHHHhhc-CCccHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEEcCCCCeEEEccCcccc
Confidence            7899999998 699999975 57999999999999999999 9999   899999999999     46789999999987

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.82  E-value=2.8e-20  Score=196.11  Aligned_cols=135  Identities=16%  Similarity=0.254  Sum_probs=115.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||||.+.....        .....+.+|+.+  .++||||+++++++.... .++||
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~lv~   93 (322)
T 2ycf_A           15 SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-YYIVL   93 (322)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEEEE
T ss_pred             eeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEEEE
Confidence            4789999999999999987899999999865321        123457788877  489999999999987655 89999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   ...+||+|||+++.
T Consensus        94 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  166 (322)
T 2ycf_A           94 ELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQ-YLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  166 (322)
T ss_dssp             ECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESSSSSSCCEEECCCTTCEE
T ss_pred             ecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHHHEEEecCCCCCeEEEccCcccee
Confidence            99999999999988788999999999999999999 9999   899999999999    3   33599999999863

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.82  E-value=2.4e-20  Score=192.73  Aligned_cols=135  Identities=21%  Similarity=0.305  Sum_probs=121.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+...+++.||||.+....   ....+.+.+|+..  .++|+||+++++++...+..++||||+++
T Consensus        19 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   98 (284)
T 2vgo_A           19 GRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPR   98 (284)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             eheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCC
Confidence            478999999999999998788999999996542   1234678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        99 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  162 (284)
T 2vgo_A           99 GELYKELQKHGRFDEQRSATFMEELADALH-YCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSV  162 (284)
T ss_dssp             EEHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCHHHEEEcCCCCEEEecccccc
Confidence            999999987678999999999999999999 9999   899999999999    78899999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=197.34  Aligned_cols=135  Identities=24%  Similarity=0.411  Sum_probs=119.7

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC--CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED--TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~--~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+++.    ..+|+.||||++........+.|.+|+..  .++|+||+++++++...  ...++||||
T Consensus        46 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~  125 (326)
T 2w1i_A           46 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY  125 (326)
T ss_dssp             EEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECC
T ss_pred             eeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEEC
Confidence            47899999999999984    34789999999987766667789999888  38999999999998654  378999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       126 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg~~~  193 (326)
T 2w1i_A          126 LPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME-YLGT---KRYIHRDLATRNILVENENRVKIGDFGLTK  193 (326)
T ss_dssp             CTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             CCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCEeccCCCcceEEEcCCCcEEEecCcchh
Confidence            9999999999764 56999999999999999999 9999   899999999999    78899999999986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.82  E-value=2.9e-20  Score=208.70  Aligned_cols=135  Identities=17%  Similarity=0.280  Sum_probs=117.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-------------hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-------------QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTN  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-------------~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~  602 (678)
                      .+.||+|+||.||+|+...+++.||||++.....             ...+++.+|+.++  ++||||+++++++.....
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  120 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY  120 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            4789999999999999987889999999975421             2246788888873  899999999999999999


Q ss_pred             eEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC---CcEEEEeeCCc
Q 038969          603 MGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK---NIVKLITFSII  675 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~---~~vkI~DFGla  675 (678)
                      .+||||||++|+|.+++.....+++.+++.|+.|+++||+ |||+   .+|+||||||+|    ..   ..+||+|||+|
T Consensus       121 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  196 (504)
T 3q5i_A          121 FYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGIC-YLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLS  196 (504)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEESSTTCCSSEEECCCTTC
T ss_pred             EEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEeCCCcHHHEEEecCCCCccEEEEECCCC
Confidence            9999999999999999987678999999999999999999 9999   899999999999    22   36999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       197 ~  197 (504)
T 3q5i_A          197 S  197 (504)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.82  E-value=2.2e-20  Score=193.89  Aligned_cols=132  Identities=20%  Similarity=0.353  Sum_probs=115.6

Q ss_pred             hcccCCceEEEEEEE--ccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          540 VIGKGGFGTVYHGYL--EFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~--~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .||+|+||.||+|..  ...++.||||+++...  ....++|.+|+..  .++||||+++++++ ..+..++||||+++|
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~  102 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELG  102 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCCC
Confidence            899999999999965  3356899999997643  2335678889888  38999999999999 567789999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       103 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A          103 PLNKYLQQNRHVKDKNIIELVHQVSMGMK-YLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CHHHHHHhCcCCCHHHHHHHHHHHHHHHH-HHHh---CCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence            99999987778999999999999999999 9999   899999999999    78899999999986

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=3.3e-20  Score=196.23  Aligned_cols=134  Identities=22%  Similarity=0.319  Sum_probs=112.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcC----CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDED----TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~----~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.  .|+.||||++...... ....+.|+...  ++|+||+++++++...    ...++||||++
T Consensus        42 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~-~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~  118 (337)
T 3mdy_A           42 VKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTEEA-SWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHE  118 (337)
T ss_dssp             EEEEEEETTEEEEEEEE--TTEEEEEEEEEGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCT
T ss_pred             EeEeecCCCeEEEEEEE--CCceEEEEEEeccccc-hhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccC
Confidence            47899999999999987  5899999999654321 12223333332  5899999999999877    78999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.++++. ..+++.+++.++.|+++||+ |||+.+     .++|+||||||+|    .++.+||+|||+|+
T Consensus       119 ~g~L~~~l~~-~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~  190 (337)
T 3mdy_A          119 NGSLYDYLKS-TTLDAKSMLKLAYSSVSGLC-HLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  190 (337)
T ss_dssp             TCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCcHHHHhhc-cCCCHHHHHHHHHHHHHHHH-HHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCce
Confidence            9999999975 46999999999999999999 999821     2389999999999    78899999999986

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.82  E-value=1.9e-20  Score=200.49  Aligned_cols=147  Identities=20%  Similarity=0.217  Sum_probs=122.0

Q ss_pred             cccHhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-----CCCCcccEE
Q 038969          524 KFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-----HHKNLTTLV  594 (678)
Q Consensus       524 ~fs~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-----~H~NIv~l~  594 (678)
                      .+++.+.....+.|.  +.||+|+||.||+|+...+++.||||++.... ...+.+..|+.+  .+     .|+||++++
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            344444444444443  78999999999999998789999999997532 334455666655  34     499999999


Q ss_pred             EEEEcCCeeEEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-----
Q 038969          595 GYCDEDTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-----  663 (678)
Q Consensus       595 g~~~~~~~~~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-----  663 (678)
                      +++...+..+|||||+ +|+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .     
T Consensus       103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlkp~NIll~~~~~~~  177 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALN-YLRK---MSLTHTDLKPENILLDDPYFEK  177 (360)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEESCTTCCE
T ss_pred             ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCcccEEEccccccc
Confidence            9999999999999999 89999999754  46999999999999999999 9999   899999999999    3     


Q ss_pred             --------------------CCcEEEEeeCCcc
Q 038969          664 --------------------KNIVKLITFSIIK  676 (678)
Q Consensus       664 --------------------~~~vkI~DFGlar  676 (678)
                                          .+.+||+|||+|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~  210 (360)
T 3llt_A          178 SLITVRRVTDGKKIQIYRTKSTGIKLIDFGCAT  210 (360)
T ss_dssp             EEEEEECTTTCCEEEEEEESCCCEEECCCTTCE
T ss_pred             cccchhcccccccccccccCCCCEEEEeccCce
Confidence                                6789999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.82  E-value=5.3e-20  Score=197.95  Aligned_cols=134  Identities=19%  Similarity=0.270  Sum_probs=119.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.||+|+||.||+|....+|+.||||++.....        ...+.+.+|+..+  + +||||+++++++...+..++||
T Consensus       100 ~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~  179 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVF  179 (365)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEE
Confidence            789999999999999977899999999865421        1134567777763  5 8999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||+++|+|.+++.....+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       180 e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~  248 (365)
T 2y7j_A          180 DLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVS-FLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSC  248 (365)
T ss_dssp             CCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEECCCCCEEEEecCccc
Confidence            99999999999987678999999999999999999 9999   899999999999    78899999999886

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.82  E-value=2.5e-20  Score=196.08  Aligned_cols=135  Identities=21%  Similarity=0.361  Sum_probs=119.2

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|...     ..++.||||.+.... .....+|.+|+..  .++|+||+++++++...+..++||||
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  109 (322)
T 1p4o_A           30 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL  109 (322)
T ss_dssp             EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEe
Confidence            478999999999999875     246789999997643 3445678899888  38999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      +++|+|.+++...          ..+++.++++++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||++
T Consensus       110 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dikp~NIli~~~~~~kl~Dfg~~  185 (322)
T 1p4o_A          110 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA-YLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMT  185 (322)
T ss_dssp             CTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCC
T ss_pred             CCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCccceEEEcCCCeEEECcCccc
Confidence            9999999999642          45799999999999999999 9999   899999999999    7789999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       186 ~  186 (322)
T 1p4o_A          186 R  186 (322)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.82  E-value=4e-20  Score=195.64  Aligned_cols=135  Identities=16%  Similarity=0.244  Sum_probs=120.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+|....+|+.||||++....  .....++.+|+..+   .+||||+++++++...+..++||||+++|
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~  114 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG  114 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence            68999999999999998789999999997642  23356788888773   46899999999999999999999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      +|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   .+.+||+|||+|+.
T Consensus       115 ~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~-~LH~---~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~  183 (327)
T 3lm5_A          115 EIFSLCLPELAEMVSENDVIRLIKQILEGVY-YLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRK  183 (327)
T ss_dssp             EGGGGGSSCC-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEESCBTTBCCEEECCGGGCEE
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCcCChHHEEEecCCCCCcEEEeeCccccc
Confidence            999999654  67999999999999999999 9999   899999999999    3   58999999999863

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.82  E-value=3.7e-20  Score=192.26  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=118.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc-------------CCe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-------------DTN  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-------------~~~  602 (678)
                      .+.||+|+||.||+|+...+|+.||||.+... ....+.+.+|+..  .++||||+++++++.+             .+.
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   89 (303)
T 1zy4_A           11 IAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKST   89 (303)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEE
T ss_pred             hheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCc
Confidence            37899999999999998878999999999653 3445678888888  3899999999999865             356


Q ss_pred             eEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          603 MGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++||||+++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  164 (303)
T 1zy4_A           90 LFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALS-YIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAK  164 (303)
T ss_dssp             EEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECCCCCCS
T ss_pred             eEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHH-HHHh---CCeecccCCHHhEEEcCCCCEEEeeCcchh
Confidence            89999999999999999743 56889999999999999999 9999   899999999999    78899999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.82  E-value=3.8e-20  Score=200.95  Aligned_cols=134  Identities=21%  Similarity=0.294  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cC--CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VH--HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~--H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||++... .++.||||++...  .....+++.+|+.++  ++  |+||+++++++...+..+|||| +.
T Consensus        61 ~~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~  138 (390)
T 2zmd_A           61 LKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG  138 (390)
T ss_dssp             EEEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CC
T ss_pred             EEEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cC
Confidence            478999999999999987 6899999999654  344567789998873  53  6999999999999999999999 56


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.||++||+ |||+   .+|+||||||+|   .++.+||+|||+|+.
T Consensus       139 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~ivHrDlkp~NIll~~~~~kl~DFG~a~~  203 (390)
T 2zmd_A          139 NIDLNSWLKKKKSIDPWERKSYWKNMLEAVH-TIHQ---HGIVHSDLKPANFLIVDGMLKLIDFGIANQ  203 (390)
T ss_dssp             SEEHHHHHHHCSSCCHHHHHHHHHHHHHHHH-HHHT---TTCCCCCCCGGGEEESSSCEEECCCSSSCC
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCHHHEEEECCeEEEEecCcccc
Confidence            8899999987778999999999999999999 9999   899999999999   778999999999873

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.82  E-value=3e-20  Score=193.32  Aligned_cols=135  Identities=25%  Similarity=0.400  Sum_probs=116.3

Q ss_pred             hhhcccCCceEEEEEEEccC---CEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEE-cCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCD-EDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~-~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+   ...||+|.+... .....+++.+|+..  .++||||++++++|. ..+..++||||+
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~  109 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  109 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECC
T ss_pred             cceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCC
Confidence            47899999999999987422   236899999764 33456778889887  489999999999974 456789999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus       110 ~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~  176 (298)
T 3f66_A          110 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMK-YLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLAR  176 (298)
T ss_dssp             TTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCchheEEECCCCCEEECcccccc
Confidence            999999999764 66899999999999999999 9999   899999999999    77899999999986

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.82  E-value=6.1e-20  Score=191.57  Aligned_cols=134  Identities=22%  Similarity=0.290  Sum_probs=121.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||||++.... ....+.+.+|+..  .++|+||+++++++......++||||+++|+
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  106 (303)
T 3a7i_A           27 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGS  106 (303)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             hhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCc
Confidence            368999999999999988789999999997653 3446778888877  4899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       107 L~~~~~~-~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  167 (303)
T 3a7i_A          107 ALDLLEP-GPLDETQIATILREILKGLD-YLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAG  167 (303)
T ss_dssp             HHHHHTT-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCChheEEECCCCCEEEeecccce
Confidence            9999975 57999999999999999999 9999   899999999999    77899999999985

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=6.2e-20  Score=190.07  Aligned_cols=133  Identities=19%  Similarity=0.363  Sum_probs=117.1

Q ss_pred             hhcccCCceEEEEEEEc--cCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLE--FNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+|...  ..+..||||.++.. .....+++.+|+..  .++||||+++++++ ..+..++||||+++|
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~   94 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGG   94 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCC
Confidence            48999999999999853  35788999999875 33456778889887  48999999999999 456789999999999


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        95 ~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~  158 (287)
T 1u59_A           95 PLHKFLVGKREEIPVSNVAELLHQVSMGMK-YLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSK  158 (287)
T ss_dssp             EHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CHHHHHHhCCccCCHHHHHHHHHHHHHHHH-HHHH---CCEeeCCCchheEEEcCCCCEEECccccee
Confidence            999999754 56999999999999999999 9999   899999999999    78899999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.82  E-value=4.2e-20  Score=190.32  Aligned_cols=132  Identities=26%  Similarity=0.394  Sum_probs=117.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|... ++..||||.+.... ...+.|.+|+..  .++|+||+++++++. .+..++||||+++|+|
T Consensus        18 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L   94 (279)
T 1qpc_A           18 VERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSL   94 (279)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBH
T ss_pred             eeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCCCH
Confidence            478999999999999986 78899999997653 235678888887  489999999999986 4568999999999999


Q ss_pred             HHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++
T Consensus        95 ~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           95 VDFLKTPSGIKLTINKLLDMAAQIAEGMA-FIEE---RNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             HHHTTSHHHHTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            9999764  36999999999999999999 9999   899999999999    78899999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.82  E-value=6.7e-20  Score=191.88  Aligned_cols=135  Identities=17%  Similarity=0.277  Sum_probs=116.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||||++...   ......++.+|+..  .++|+||+++++++...+..++||||+++
T Consensus        37 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  116 (310)
T 2wqm_A           37 EKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADA  116 (310)
T ss_dssp             EEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCS
T ss_pred             EEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCC
Confidence            47899999999999998778999999999753   33455678888887  48999999999999999999999999999


Q ss_pred             CCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+|.+++..    ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       117 ~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~  184 (310)
T 2wqm_A          117 GDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALE-HMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGR  184 (310)
T ss_dssp             CBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred             CCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHH-HHhh---CCeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence            999999863    367999999999999999999 9999   899999999999    78899999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=1.1e-20  Score=202.49  Aligned_cols=135  Identities=22%  Similarity=0.240  Sum_probs=117.7

Q ss_pred             hhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+++..   .+|+.||||+++...    ....+.+.+|+.+  .+ +|+||+++++++...+..+|||
T Consensus        59 ~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  138 (355)
T 1vzo_A           59 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLIL  138 (355)
T ss_dssp             EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEe
Confidence            478999999999999983   378899999986532    1223445566665  34 7999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||+++|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       139 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~  207 (355)
T 1vzo_A          139 DYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE-HLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSK  207 (355)
T ss_dssp             CCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence            99999999999987678999999999999999999 9999   899999999999    78899999999986

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.82  E-value=4.1e-20  Score=200.28  Aligned_cols=133  Identities=18%  Similarity=0.296  Sum_probs=109.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cC-CCCcccEEEEEEcCC--eeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VH-HKNLTTLVGYCDEDT--NMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~~~--~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+.+.+|+..+  +. |+||+++++++...+  ..++|||||
T Consensus        14 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~   93 (388)
T 3oz6_A           14 VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYM   93 (388)
T ss_dssp             EEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECC
T ss_pred             EEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEeccc
Confidence            47899999999999999888999999998653  334456677887773  55 999999999997544  689999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      + |+|.+++.. ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        94 ~-~~L~~~~~~-~~~~~~~~~~i~~qi~~~L~-~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  157 (388)
T 3oz6_A           94 E-TDLHAVIRA-NILEPVHKQYVVYQLIKVIK-YLHS---GGLLHRDMKPSNILLNAECHVKVADFGLSR  157 (388)
T ss_dssp             S-EEHHHHHHH-TCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             C-cCHHHHHHc-CCCCHHHHHHHHHHHHHHHH-HHHh---CCEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence            7 699999976 57999999999999999999 9999   899999999999    78899999999996

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.82  E-value=2e-20  Score=197.93  Aligned_cols=135  Identities=23%  Similarity=0.382  Sum_probs=118.7

Q ss_pred             hhhcccCCceEEEEEEEccCC-----EEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG-----TQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g-----~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|.....+     +.||+|.+.... ....+.+.+|+.++  + +||||+++++++...+..++|||
T Consensus        51 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e  130 (333)
T 2i1m_A           51 GKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE  130 (333)
T ss_dssp             EEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEe
Confidence            478999999999999985444     479999997653 34456788898873  6 89999999999999999999999


Q ss_pred             cCCCCCHHHhhcCC--------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          609 FMAKGNLEEHLSGA--------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       609 y~~~GsL~~~L~~~--------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      |+++|+|.+++...              ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+
T Consensus       131 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~  206 (333)
T 2i1m_A          131 YCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMA-FLAS---KNCIHRDVAARNVLLTNGHVAKIG  206 (333)
T ss_dssp             CCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGCEEEGGGEEEBC
T ss_pred             cCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHH-HHhc---CCcccCCcccceEEECCCCeEEEC
Confidence            99999999998632              35899999999999999999 9999   899999999999    78899999


Q ss_pred             eeCCcc
Q 038969          671 TFSIIK  676 (678)
Q Consensus       671 DFGlar  676 (678)
                      |||+|+
T Consensus       207 Dfg~~~  212 (333)
T 2i1m_A          207 DFGLAR  212 (333)
T ss_dssp             CCGGGC
T ss_pred             cccccc
Confidence            999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.82  E-value=5.4e-20  Score=188.04  Aligned_cols=133  Identities=18%  Similarity=0.303  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcC--CeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDED--TNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~--~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.  .++.||||++...  .....++|.+|+..+  ++||||+++++++...  +..++||||++
T Consensus        15 ~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~   92 (271)
T 3kmu_A           15 LTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMP   92 (271)
T ss_dssp             EEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCT
T ss_pred             HHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccC
Confidence            47899999999999997  5899999999764  334556789998884  8999999999999876  77899999999


Q ss_pred             CCCHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++....  .+++.+++.++.|+++||+ |||+   .+  |+||||||+|    +++.+||+|||++.
T Consensus        93 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~  161 (271)
T 3kmu_A           93 YGSLYNVLHEGTNFVVDQSQAVKFALDMARGMA-FLHT---LEPLIPRHALNSRSVMIDEDMTARISMADVKF  161 (271)
T ss_dssp             TCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHH-HHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHH-HHhc---CCCceecCCCccceEEEcCCcceeEEecccee
Confidence            999999998753  5999999999999999999 9998   55  9999999999    77889999888764

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.82  E-value=3.6e-20  Score=193.24  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=114.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEc----CCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDE----DTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~----~~~~~LV~Ey~~  611 (678)
                      +.||+|+||.||++....+++.||||+++..     ..+.+|+..   ..+||||+++++++..    ....++||||++
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~   98 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD   98 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecC
Confidence            6799999999999999878999999999653     244555554   4789999999999876    677899999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      +|+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   ++.+||+|||+|+.
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  169 (299)
T 3m2w_A           99 GGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ-YLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  169 (299)
T ss_dssp             SCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCHHHEEEecCCCCCcEEEeccccccc
Confidence            99999999754  47999999999999999999 9999   899999999999    3   78899999999864

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.82  E-value=5e-20  Score=193.12  Aligned_cols=135  Identities=25%  Similarity=0.404  Sum_probs=112.0

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC-----eeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT-----NMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~-----~~~L  605 (678)
                      .+.||+|+||.||+|....   .++.||||.++..  .....+.+.+|+..  .++||||+++++++....     ..++
T Consensus        39 ~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~  118 (313)
T 3brb_A           39 GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMV  118 (313)
T ss_dssp             EEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEE
T ss_pred             ccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEE
Confidence            4789999999999998764   3458999999754  33445678888887  489999999999997654     3599


Q ss_pred             EEecCCCCCHHHhhc------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          606 IYEFMAKGNLEEHLS------GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~------~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      ||||+++|+|.+++.      ....+++.+++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||++
T Consensus       119 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~  194 (313)
T 3brb_A          119 ILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME-YLSN---RNFLHRDLAARNCMLRDDMTVCVADFGLS  194 (313)
T ss_dssp             EEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHH-HHHT---TTCCCCCCSGGGEEECTTSCEEECSCSCC
T ss_pred             EEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCCcceEEEcCCCcEEEeecCcc
Confidence            999999999999983      3367999999999999999999 9999   899999999999    7789999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       195 ~  195 (313)
T 3brb_A          195 K  195 (313)
T ss_dssp             -
T ss_pred             e
Confidence            6

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.82  E-value=1e-20  Score=199.95  Aligned_cols=134  Identities=21%  Similarity=0.393  Sum_probs=114.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEE----EEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQ----VAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~----VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+++.    ||+|.+.... ....+++.+|+..  .++|+||+++++++. .+..++||||+
T Consensus        18 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   96 (325)
T 3kex_A           18 LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYL   96 (325)
T ss_dssp             EEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEECC
T ss_pred             eeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEEeC
Confidence            47899999999999998756654    8888875442 2333456677766  489999999999986 46689999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        97 ~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  163 (325)
T 3kex_A           97 PLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMY-YLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVAD  163 (325)
T ss_dssp             TTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHH-HHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred             CCCCHHHHHHHccccCCHHHHHHHHHHHHHHHH-HHHh---CCCCCCccchheEEECCCCeEEECCCCccc
Confidence            999999999865 57999999999999999999 9999   899999999999    78899999999987

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.82  E-value=4.5e-21  Score=207.12  Aligned_cols=135  Identities=14%  Similarity=0.144  Sum_probs=113.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC---chhhHHHHHHHHHH---h--cCCCCcccEE-------EEEEcCCe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS---SVQGYKQFQAEVQY---I--VHHKNLTTLV-------GYCDEDTN  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~---~~~~~~~f~~Ev~~---~--l~H~NIv~l~-------g~~~~~~~  602 (678)
                      .+.||+|+||.||+|+...+|+.||||++...   .....+.|.+|+.+   +  ++|||||+++       +++...+.
T Consensus        78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~  157 (377)
T 3byv_A           78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  157 (377)
T ss_dssp             EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred             cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence            47899999999999998768999999999743   33456788999954   2  6899999998       77665532


Q ss_pred             -----------------eEEEEecCCCCCHHHhhcCCC-------CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC
Q 038969          603 -----------------MGLIYEFMAKGNLEEHLSGAN-------TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS  658 (678)
Q Consensus       603 -----------------~~LV~Ey~~~GsL~~~L~~~~-------~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl  658 (678)
                                       .+|||||+ +|+|.+++....       .+++..++.|+.|+++||+ |||+   .+|+||||
T Consensus       158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDi  232 (377)
T 3byv_A          158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLA-SLHH---YGLVHTYL  232 (377)
T ss_dssp             CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH-HHHH---TTEECSCC
T ss_pred             ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHH-HHHh---CCeecCCC
Confidence                             88999999 689999997532       3446889999999999999 9999   89999999


Q ss_pred             CCCC----CCCcEEEEeeCCccc
Q 038969          659 SSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       659 k~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+|    .++.+||+|||+|+.
T Consensus       233 kp~NIll~~~~~~kL~DFG~a~~  255 (377)
T 3byv_A          233 RPVDIVLDQRGGVFLTGFEHLVR  255 (377)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEE
T ss_pred             CHHHEEEcCCCCEEEEechhhee
Confidence            9999    788999999999874

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.81  E-value=7.8e-20  Score=191.33  Aligned_cols=134  Identities=22%  Similarity=0.302  Sum_probs=113.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-----hhHHHHHHHHHHh-----cCCCCcccEEEEEEcCC-----e
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-----QGYKQFQAEVQYI-----VHHKNLTTLVGYCDEDT-----N  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-----~~~~~f~~Ev~~~-----l~H~NIv~l~g~~~~~~-----~  602 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....     .....+.+|+..+     ++||||+++++++....     .
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~   93 (308)
T 3g33_A           14 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIK   93 (308)
T ss_dssp             EEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCcee
Confidence            4789999999999999877899999999864321     1123455665552     46999999999997755     5


Q ss_pred             eEEEEecCCCCCHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          603 MGLIYEFMAKGNLEEHLSGAN--TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~L~~~~--~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .++||||+. |+|.+++....  .+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        94 ~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  168 (308)
T 3g33_A           94 VTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLD-FLHA---NCIVHRDLKPENILVTSGGTVKLADFGLAR  168 (308)
T ss_dssp             EEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCTTTEEECTTSCEEECSCSCTT
T ss_pred             EEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEcCCCCEEEeeCcccc
Confidence            899999997 69999998753  4999999999999999999 9999   899999999999    78899999999986

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.81  E-value=3e-20  Score=194.65  Aligned_cols=135  Identities=27%  Similarity=0.414  Sum_probs=116.7

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCC-eeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDT-NMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~-~~~LV~  607 (678)
                      .+.||+|+||.||+|+..     .+++.||||++.... ....+.+.+|+..+  + +||||+++++++...+ ..++||
T Consensus        32 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~  111 (316)
T 2xir_A           32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV  111 (316)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEE
T ss_pred             eeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEE
Confidence            478999999999999852     356899999997653 33456788888873  5 7999999999987654 589999


Q ss_pred             ecCCCCCHHHhhcCCCC----------------CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcE
Q 038969          608 EFMAKGNLEEHLSGANT----------------LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIV  667 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~----------------l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~v  667 (678)
                      ||+++|+|.+++.....                +++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~i~H~dikp~Nil~~~~~~~  187 (316)
T 2xir_A          112 EFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGME-FLAS---RKCIHRDLAARNILLSEKNVV  187 (316)
T ss_dssp             ECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCE
T ss_pred             EcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHH-HHHh---CCcccccCccceEEECCCCCE
Confidence            99999999999986532                899999999999999999 9999   899999999999    77899


Q ss_pred             EEEeeCCcc
Q 038969          668 KLITFSIIK  676 (678)
Q Consensus       668 kI~DFGlar  676 (678)
                      ||+|||+++
T Consensus       188 kl~Dfg~~~  196 (316)
T 2xir_A          188 KICDFGLAR  196 (316)
T ss_dssp             EECCCGGGS
T ss_pred             EECCCcccc
Confidence            999999986

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.81  E-value=6.4e-20  Score=189.72  Aligned_cols=134  Identities=18%  Similarity=0.206  Sum_probs=109.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+++...+|+.||||++.... .....++..|...   .++||||+++++++...+..++||||++ |
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~   90 (290)
T 3fme_A           12 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-T   90 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-E
T ss_pred             HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-c
Confidence            478999999999999998789999999997652 2333344444333   3889999999999999999999999997 5


Q ss_pred             CHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++..    ...+++..++.|+.|+++||+ |||+   . +|+||||||+|    .++.+||+|||+|+
T Consensus        91 ~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T 3fme_A           91 SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE-HLHS---KLSVIHRDVKPSNVLINALGQVKMCDFGISG  158 (290)
T ss_dssp             EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC----
T ss_pred             chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHhh---cCCeecCCCCHHHEEECCCCCEEEeecCCcc
Confidence            88887753    468999999999999999999 9999   6 89999999999    77899999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.81  E-value=3.8e-20  Score=190.73  Aligned_cols=131  Identities=21%  Similarity=0.358  Sum_probs=115.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc----------------
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE----------------  599 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~----------------  599 (678)
                      .+.||+|+||.||+|....+|+.||+|.+....    ..+.+|+..  .++||||+++++++..                
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (284)
T 2a19_B           16 IELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSK   91 (284)
T ss_dssp             EEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCE
T ss_pred             eeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccC
Confidence            478999999999999998789999999997654    245567666  4899999999998854                


Q ss_pred             CCeeEEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeC
Q 038969          600 DTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFS  673 (678)
Q Consensus       600 ~~~~~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFG  673 (678)
                      ....++||||+++|+|.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg  167 (284)
T 2a19_B           92 TKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVD-YIHS---KKLINRDLKPSNIFLVDTKQVKIGDFG  167 (284)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEETTEEEECCCT
T ss_pred             cceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeccCCHHHEEEcCCCCEEECcch
Confidence            44589999999999999999643  67999999999999999999 9999   899999999999    78899999999


Q ss_pred             Ccc
Q 038969          674 IIK  676 (678)
Q Consensus       674 lar  676 (678)
                      +++
T Consensus       168 ~~~  170 (284)
T 2a19_B          168 LVT  170 (284)
T ss_dssp             TCE
T ss_pred             hhe
Confidence            986

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.81  E-value=5.3e-20  Score=194.32  Aligned_cols=135  Identities=20%  Similarity=0.330  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEE--------cCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCD--------EDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~--------~~~~~~LV  606 (678)
                      .+.||+|+||.||+|+...+++.||||++........+.+.+|+..+  + +||||+++++++.        .....++|
T Consensus        33 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv  112 (337)
T 3ll6_A           33 RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLL  112 (337)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEE
T ss_pred             EEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEE
Confidence            47899999999999999878999999999776666667888888773  5 5999999999994        33458999


Q ss_pred             EecCCCCCHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCC--ccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          607 YEFMAKGNLEEHLSG---ANTLTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~---~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~--iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |||+. |+|.+++..   ...+++.+++.|+.|+++||+ |||+   .+  |+||||||+|    .++.+||+|||+++.
T Consensus       113 ~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  187 (337)
T 3ll6_A          113 TELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQ-HMHR---QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATT  187 (337)
T ss_dssp             EECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHH-HHHT---SSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBC
T ss_pred             EEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCCCEEEccCCcccEEECCCCCEEEecCcccee
Confidence            99996 799998864   367999999999999999999 9999   66  9999999999    778999999999863

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.81  E-value=1.1e-19  Score=192.86  Aligned_cols=133  Identities=23%  Similarity=0.405  Sum_probs=114.5

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--h--cCCCCcccEEEEEEcCC----eeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--I--VHHKNLTTLVGYCDEDT----NMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~--l~H~NIv~l~g~~~~~~----~~~LV~E  608 (678)
                      +.+.||+|+||.||+|+.  +|+.||||++....   .+.+.+|+++  .  ++||||+++++++....    ..++|||
T Consensus        46 ~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e  120 (342)
T 1b6c_B           46 LQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD  120 (342)
T ss_dssp             EEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEEC
T ss_pred             EEeeecCCCCcEEEEEEE--cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEe
Confidence            457999999999999987  68999999997543   3455666555  2  78999999999998776    7899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.. ..+++.+++.++.|+++||+ |||...     ..+|+||||||+|    .++.+||+|||+|+
T Consensus       121 ~~~~g~L~~~l~~-~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~  195 (342)
T 1b6c_B          121 YHEHGSLFDYLNR-YTVTVEGMIKLALSTASGLA-HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  195 (342)
T ss_dssp             CCTTCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             ecCCCcHHHHHhc-cCccHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCce
Confidence            9999999999975 56999999999999999999 999210     1789999999999    78899999999985

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.81  E-value=5.6e-20  Score=192.72  Aligned_cols=132  Identities=23%  Similarity=0.348  Sum_probs=112.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+.  .++.||||.+...  ...+.|.+|+..  .++||||+++++++.  +..++||||+++|+|
T Consensus        13 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~L   86 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGSL   86 (307)
T ss_dssp             EEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTCBH
T ss_pred             eeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCCCH
Confidence            47899999999999987  5789999999754  345678888887  489999999999876  458999999999999


Q ss_pred             HHhhcCCC---CCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc-EEEEeeCCcc
Q 038969          616 EEHLSGAN---TLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI-VKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~~~---~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~-vkI~DFGlar  676 (678)
                      .+++....   .+++..++.++.|+++||+ |||+....+|+||||||+|    .++. +||+|||+++
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~-~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           87 YNVLHGAEPLPYYTAAHAMSWCLQCSQGVA-YLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             HHHHHCSSSEECCCHHHHHHHHHHHHHHHH-HHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             HHHHhccCCCCccCHHHHHHHHHHHHHHHH-HHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            99998653   4789999999999999999 9998554689999999999    4554 8999999986

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.81  E-value=8.1e-20  Score=192.40  Aligned_cols=134  Identities=22%  Similarity=0.397  Sum_probs=117.3

Q ss_pred             hhhcccCCceEEEEEEE----ccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYL----EFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~----~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~E  608 (678)
                      .+.||+|+||.||++..    ..+++.||||++.... ....+.|.+|+.+  .++||||+++++++..  ....++|||
T Consensus        36 ~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e  115 (318)
T 3lxp_A           36 IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVME  115 (318)
T ss_dssp             EEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEEC
T ss_pred             hheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEe
Confidence            47899999999988865    2367899999998653 3446778899888  4899999999999987  467899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       116 ~~~~~~L~~~l~~-~~~~~~~~~~i~~~l~~~l~-~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          116 YVPLGSLRDYLPR-HSIGLAQLLLFAQQICEGMA-YLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             CCTTCBHHHHGGG-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             cccCCcHHHHHhh-CCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCchheEEEcCCCCEEECCccccc
Confidence            9999999999986 45999999999999999999 9999   899999999999    78889999999986

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.81  E-value=2.8e-20  Score=193.52  Aligned_cols=135  Identities=16%  Similarity=0.258  Sum_probs=104.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+++.||||.+.... ....+++.+|+..+  ++||||+++++++...+..++||||+++|+
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   99 (303)
T 2vwi_A           20 QEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGS   99 (303)
T ss_dssp             EEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCB
T ss_pred             hheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCc
Confidence            478999999999999987678999999987543 23456788888873  889999999999999999999999999999


Q ss_pred             HHHhhcC--------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSG--------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~--------~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++..        ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       100 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  169 (303)
T 2vwi_A          100 VLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLE-YLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVSA  169 (303)
T ss_dssp             HHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred             hHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH-HHHh---CCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence            9999863        356999999999999999999 9999   899999999999    78899999999875

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.81  E-value=3.8e-20  Score=195.95  Aligned_cols=132  Identities=24%  Similarity=0.414  Sum_probs=109.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHH--HHH--hcCCCCcccEEEEEEc-----CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAE--VQY--IVHHKNLTTLVGYCDE-----DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~E--v~~--~l~H~NIv~l~g~~~~-----~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|+.  +++.||||++.....   ..+..|  +..  .++|+||+++++.+..     ....+||||
T Consensus        18 ~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e   92 (336)
T 3g2f_A           18 LELIGRGRYGAVYKGSL--DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVME   92 (336)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEEC
T ss_pred             eeecccCCCeEEEEEEE--CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEe
Confidence            47899999999999976  789999999975432   333334  333  3899999999986642     235789999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC------CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC------CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~------~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.. ...++..+++|+.|+++||+ |||+.+      .++|+||||||+|    .++.+||+|||+|+
T Consensus        93 ~~~~g~L~~~l~~-~~~~~~~~~~i~~qi~~~L~-~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~  168 (336)
T 3g2f_A           93 YYPNGSLXKYLSL-HTSDWVSSCRLAHSVTRGLA-YLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM  168 (336)
T ss_dssp             CCTTCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cCCCCcHHHHHhh-cccchhHHHHHHHHHHHHHH-HHHhhhccccccccceeecccccceEEEcCCCcEEEeecccee
Confidence            9999999999975 45699999999999999999 999931      1299999999999    77899999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.81  E-value=9.4e-20  Score=188.71  Aligned_cols=135  Identities=19%  Similarity=0.290  Sum_probs=120.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...+++.||||++....  ....+.+.+|+..  .++||||+++++++...+..++||||++++
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  106 (287)
T 2wei_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (287)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCC
Confidence            478999999999999998789999999986542  2346678888887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      +|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|       ....+||+|||+++
T Consensus       107 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~  172 (287)
T 2wei_A          107 ELFDEIIKRKRFSEHDAARIIKQVFSGIT-YMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (287)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence            99999876678999999999999999999 9999   899999999999       23479999999886

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.81  E-value=1.5e-19  Score=187.73  Aligned_cols=132  Identities=11%  Similarity=0.041  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+|+.||||++....   ....++|.+|+..  .++|+||+++++++...+..++||||+++
T Consensus        36 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g  115 (286)
T 3uqc_A           36 LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRG  115 (286)
T ss_dssp             EEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCE
T ss_pred             EEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCC
Confidence            478999999999999998779999999997653   2345678888877  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSII  675 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGla  675 (678)
                      |+|.+++..  .....++++|+.|+++||+ |||+   .+|+||||||+|    +++.+||+++|..
T Consensus       116 ~~L~~~l~~--~~~~~~~~~i~~ql~~aL~-~lH~---~givH~Dikp~NIll~~~g~~kl~~~~~~  176 (286)
T 3uqc_A          116 GSLQEVADT--SPSPVGAIRAMQSLAAAAD-AAHR---AGVALSIDHPSRVRVSIDGDVVLAYPATM  176 (286)
T ss_dssp             EEHHHHHTT--CCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEEETTSCEEECSCCCC
T ss_pred             CCHHHHHhc--CCChHHHHHHHHHHHHHHH-HHHH---CCCccCCCCcccEEEcCCCCEEEEecccc
Confidence            999999965  3466788999999999999 9999   899999999999    8899999987754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.81  E-value=6.1e-20  Score=203.88  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=114.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+++.+|+.+  .++||||+++++++...      ...+|||
T Consensus        67 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~  146 (464)
T 3ttj_A           67 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM  146 (464)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred             EEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEE
Confidence            37899999999999999888999999999764  33445678888877  48999999999999654      4579999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |||++ +|.+.+..  .+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       147 E~~~~-~l~~~~~~--~l~~~~~~~~~~qil~aL~-~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~  213 (464)
T 3ttj_A          147 ELMDA-NLCQVIQM--ELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  213 (464)
T ss_dssp             ECCSE-EHHHHHTS--CCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred             eCCCC-CHHHHHhh--cCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence            99976 57777764  5999999999999999999 9999   899999999999    788999999999873

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.81  E-value=5.3e-20  Score=194.38  Aligned_cols=135  Identities=25%  Similarity=0.382  Sum_probs=114.2

Q ss_pred             hhhcccCCceEEEEEEE-----ccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~-----~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.     ..+++.||||.+... ......++.+|+..  .++||||+++++++......++||||
T Consensus        35 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  114 (327)
T 2yfx_A           35 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMEL  114 (327)
T ss_dssp             EEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             EEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEec
Confidence            47899999999999983     346778999999754 34455678888877  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC-------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCc
Q 038969          610 MAKGNLEEHLSGA-------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSII  675 (678)
Q Consensus       610 ~~~GsL~~~L~~~-------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGla  675 (678)
                      +++|+|.+++...       ..+++.+++.++.|+++||+ |||+   .+|+||||||+|       +...+||+|||++
T Consensus       115 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~-~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~  190 (327)
T 2yfx_A          115 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQ-YLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  190 (327)
T ss_dssp             CTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             CCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-HHhh---CCeecCcCCHhHEEEecCCCcceEEECccccc
Confidence            9999999999753       35999999999999999999 9999   899999999999       2446999999987


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       191 ~  191 (327)
T 2yfx_A          191 R  191 (327)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.81  E-value=5.2e-20  Score=189.45  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=117.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||++....+|+.||+|.+...  .....+.+.+|+..  .++||||+++++++..  ....++||||++
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~   90 (279)
T 2w5a_A           11 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE   90 (279)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCT
T ss_pred             ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCC
Confidence            47899999999999999878999999999754  33445678888887  4899999999998853  678999999999


Q ss_pred             CCCHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHhHhcCCCCC-----ccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA----NTLTWEARLRIATEAAQGSHSAFDQGCCPH-----ICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~----~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~-----iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++...    ..+++.+++.++.|+++||+ |||+   .+     |+||||||+|    .++.+||+|||+++
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           91 GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK-ECHR---RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             TEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHH---HC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH-HHhc---ccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence            99999999742    45999999999999999999 9999   66     9999999999    78899999999875

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.81  E-value=2.5e-20  Score=196.89  Aligned_cols=134  Identities=19%  Similarity=0.315  Sum_probs=115.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-HHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+++.||||++....... ...+.+|+..  .++||||+++++++...+..++||||++ |+
T Consensus         7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~   85 (324)
T 3mtl_A            7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   85 (324)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EE
T ss_pred             EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cC
Confidence            368999999999999998789999999997543221 1234567766  4899999999999999999999999997 59


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  148 (324)
T 3mtl_A           86 LKQYLDDCGNIINMHNVKLFLFQLLRGLA-YCHR---QKVLHRDLKPQNLLINERGELKLADFGLAR  148 (324)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEE
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCCcCHHHEEECCCCCEEEccCcccc
Confidence            99998754 56999999999999999999 9999   899999999999    78899999999986

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.81  E-value=4.8e-20  Score=198.45  Aligned_cols=134  Identities=19%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+++.+|+..  .++||||+++++++...      ...++||
T Consensus        30 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~  109 (367)
T 1cm8_A           30 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM  109 (367)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred             eEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEE
Confidence            36899999999999999878999999999653  33345678888887  38999999999999765      3469999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+ +++|.+++.. ..+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       110 e~~-~~~L~~~~~~-~~l~~~~~~~~~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  177 (367)
T 1cm8_A          110 PFM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLR-YIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQ  177 (367)
T ss_dssp             ECC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             ecC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence            999 7899999976 57999999999999999999 9999   899999999999    788999999999873

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.81  E-value=1.5e-19  Score=187.74  Aligned_cols=132  Identities=17%  Similarity=0.294  Sum_probs=114.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|....+|+.||||++.....  .+++.+|+..  .+ +|+|++++++++......++||||+ +|+
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~   91 (298)
T 1csn_A           15 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPS   91 (298)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc--cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCC
Confidence            4789999999999999877899999999875432  2345666655  34 8999999999999999999999999 999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc-----EEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI-----VKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~-----vkI~DFGlar  676 (678)
                      |.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.     +||+|||+|+
T Consensus        92 L~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~  159 (298)
T 1csn_A           92 LEDLLDLCGRKFSVKTVAMAAKQMLARVQ-SIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  159 (298)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence            99999854 56999999999999999999 9999   899999999999    4443     9999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=190.35  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=116.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+|+.||||.+....  ..+++.+|+..  .++||||+++++++...+..++||||+++|+|
T Consensus        34 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L  111 (314)
T 3com_A           34 LEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSV  111 (314)
T ss_dssp             EEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEH
T ss_pred             heeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCH
Confidence            478999999999999998779999999997643  34567888877  48999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  173 (314)
T 3com_A          112 SDIIRLRNKTLTEDEIATILQSTLKGLE-YLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAG  173 (314)
T ss_dssp             HHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCCcCCCcCHHHEEECCCCCEEEeecccch
Confidence            999963 367999999999999999999 9999   899999999999    78899999999985

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.80  E-value=4.1e-20  Score=197.12  Aligned_cols=135  Identities=22%  Similarity=0.312  Sum_probs=115.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-----HHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-----YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-----~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+|+.||||.+.......     .+.+.+|+.+  .++||||+++++++...+..++||||+
T Consensus        15 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   94 (346)
T 1ua2_A           15 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   94 (346)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcC
Confidence            378999999999999987779999999997542211     2357788877  489999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++ +|.+++... ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        95 ~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (346)
T 1ua2_A           95 ET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLE-YLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKS  161 (346)
T ss_dssp             SE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             CC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHH-HHHH---CCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence            86 899998765 56999999999999999999 9999   899999999999    788999999999863

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.80  E-value=4.2e-20  Score=194.75  Aligned_cols=134  Identities=24%  Similarity=0.409  Sum_probs=118.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEc------CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDE------DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~------~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+|+.||||++..... ...++.+|+..+  + +|+||+++++++..      .+..++|||
T Consensus        29 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e  107 (326)
T 2x7f_A           29 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME  107 (326)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEE
T ss_pred             EEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEE
Confidence            3789999999999999977899999999975432 345677887763  4 89999999999976      467899999


Q ss_pred             cCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       108 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  177 (326)
T 2x7f_A          108 FCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLS-HLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSA  177 (326)
T ss_dssp             CCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEECTTCCEEECCCTTTC
T ss_pred             cCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCcHHHEEEcCCCCEEEeeCcCce
Confidence            99999999999754  57999999999999999999 9999   899999999999    78899999999986

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.80  E-value=1.4e-19  Score=187.64  Aligned_cols=131  Identities=28%  Similarity=0.478  Sum_probs=111.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+..   ..||||+++..  .....+.|.+|+..+  ++|+||+++++++ .....++||||+++|
T Consensus        29 ~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~  104 (289)
T 3og7_A           29 GQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGS  104 (289)
T ss_dssp             EEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCCEE
T ss_pred             eeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEecCCC
Confidence            478999999999999753   46999999754  344567789998884  8999999999975 456789999999999


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       105 ~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~-~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  168 (289)
T 3og7_A          105 SLYHHLHASETKFEMKKLIDIARQTARGMD-YLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLAT  168 (289)
T ss_dssp             EHHHHHTTC---CCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEETTTEEEECCCC---
T ss_pred             cHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccccCccceEEECCCCCEEEccceecc
Confidence            999999654 67999999999999999999 9999   899999999999    78899999999986

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.80  E-value=6.4e-20  Score=196.51  Aligned_cols=144  Identities=16%  Similarity=0.257  Sum_probs=119.6

Q ss_pred             HhhHHHHHhhhh--hhcccCCceEEEEEEEccCCEEEEEEEeccCch-----------hhHHHHHHHHHH--hcCCCCcc
Q 038969          527 YSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-----------QGYKQFQAEVQY--IVHHKNLT  591 (678)
Q Consensus       527 ~~el~~~t~~f~--~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-----------~~~~~f~~Ev~~--~l~H~NIv  591 (678)
                      ..++....+.|.  +.||+|+||.||+|... +|+.||||++.....           ...+.+.+|+.+  .++||||+
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            455555555554  79999999999999986 699999999854321           123678889887  48999999


Q ss_pred             cEEEEEEc-----CCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          592 TLVGYCDE-----DTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       592 ~l~g~~~~-----~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      ++++++..     ....++||||++ |+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|   
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~NIl~  167 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLH-VLHE---AGVVHRDLHPGNILL  167 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEE
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHH---CcCEecCCChHHEEE
Confidence            99999854     336899999998 6888888764 57999999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       .++.+||+|||+|+
T Consensus       168 ~~~~~~kl~Dfg~~~  182 (362)
T 3pg1_A          168 ADNNDITICDFNLAR  182 (362)
T ss_dssp             CTTCCEEECCTTC--
T ss_pred             cCCCCEEEEecCccc
Confidence             78899999999986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.80  E-value=7.9e-20  Score=196.28  Aligned_cols=134  Identities=12%  Similarity=0.166  Sum_probs=109.5

Q ss_pred             hhhcccCCceEEEEEEEccC-----CEEEEEEEeccCchhhHHH-----------HHHHHHH--hcCCCCcccEEEEEEc
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-----GTQVAVKMLSASSVQGYKQ-----------FQAEVQY--IVHHKNLTTLVGYCDE  599 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-----g~~VAVK~l~~~~~~~~~~-----------f~~Ev~~--~l~H~NIv~l~g~~~~  599 (678)
                      .+.||+|+||.||+|.+..+     ++.||||++.........+           +..|+..  .++|+||+++++++..
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~  119 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLH  119 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEE
T ss_pred             EEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeee
Confidence            47899999999999998633     4789999987654321111           1222222  3789999999999876


Q ss_pred             C----CeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEE
Q 038969          600 D----TNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVK  668 (678)
Q Consensus       600 ~----~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vk  668 (678)
                      .    ...+|||||+ +|+|.+++... ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|      ..+.+|
T Consensus       120 ~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~-~lH~---~~iiHrDlkp~Nill~~~~~~~~k  194 (364)
T 3op5_A          120 DKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILE-YIHE---HEYVHGDIKASNLLLNYKNPDQVY  194 (364)
T ss_dssp             EETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEEESSCTTCEE
T ss_pred             ccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeEEecCCHHHEEEecCCCCeEE
Confidence            4    4589999999 99999999765 67999999999999999999 9999   899999999999      568899


Q ss_pred             EEeeCCcc
Q 038969          669 LITFSIIK  676 (678)
Q Consensus       669 I~DFGlar  676 (678)
                      |+|||+|+
T Consensus       195 l~DFG~a~  202 (364)
T 3op5_A          195 LVDYGLAY  202 (364)
T ss_dssp             ECCCTTCE
T ss_pred             EEECCcce
Confidence            99999996

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.80  E-value=7.6e-20  Score=193.60  Aligned_cols=134  Identities=26%  Similarity=0.396  Sum_probs=115.1

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .+.||+|+||.||+|....+++    .||+|.+... .....+++.+|+..  .++||||+++++++.... .++|+||+
T Consensus        20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~~~   98 (327)
T 3lzb_A           20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLM   98 (327)
T ss_dssp             EEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEECCC
T ss_pred             EEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEEec
Confidence            4789999999999999865665    4578877553 33456788889888  489999999999998754 88999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ++|+|.+++... ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        99 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~  165 (327)
T 3lzb_A           99 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN-YLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             SSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHhh---CCCcCCCCCHHHEEEcCCCCEEEccCccee
Confidence            999999999754 67999999999999999999 9999   899999999999    77899999999986

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.80  E-value=1.4e-19  Score=193.07  Aligned_cols=134  Identities=20%  Similarity=0.332  Sum_probs=115.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEc--------CCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDE--------DTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--------~~~~~L  605 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....  .....+.+|+.+  .++|+||+++++++..        .+..++
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l  101 (351)
T 3mi9_A           22 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL  101 (351)
T ss_dssp             EEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEE
T ss_pred             EEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEE
Confidence            4789999999999999987899999999865432  234567788877  4899999999999976        456899


Q ss_pred             EEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          606 IYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ||||+++ +|.+.+... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       102 v~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A          102 VFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLY-YIHR---NKILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             EEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence            9999985 787777654 67999999999999999999 9999   899999999999    78899999999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.80  E-value=7.9e-20  Score=188.26  Aligned_cols=132  Identities=27%  Similarity=0.438  Sum_probs=112.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-CeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-TNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||++..  .|+.||||.++...  ..+.|.+|+..  .++|+||+++++++.+. +..++||||+++|+
T Consensus        26 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~  101 (278)
T 1byg_A           26 LQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS  101 (278)
T ss_dssp             EEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEE
T ss_pred             EeEEecCCCceEEEEEE--cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCC
Confidence            47899999999999987  58999999997653  35678888887  48999999999997554 47899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus       102 L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A          102 LVDYLRSRGRSVLGGDCLLKFSLDVCEAME-YLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  166 (278)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHH-HHHh---CCccccCCCcceEEEeCCCcEEEeecccccc
Confidence            99999754  23899999999999999999 9999   899999999999    788999999999863

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.80  E-value=2.7e-19  Score=192.75  Aligned_cols=133  Identities=22%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||||++...  .....+.+.+|+.+  .++||||+++++++...+      ..++||
T Consensus        30 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~  109 (371)
T 2xrw_A           30 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM  109 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEE
T ss_pred             eeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEE
Confidence            37899999999999999878999999999753  33445678888877  489999999999997654      789999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||++ |+|.+++..  .+++..+..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       110 e~~~-~~l~~~~~~--~~~~~~~~~i~~qi~~al~-~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          110 ELMD-ANLCQVIQM--ELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             ECCS-EEHHHHHHS--CCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             EcCC-CCHHHHHhh--ccCHHHHHHHHHHHHHHHH-HHHH---CCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence            9997 589988863  5899999999999999999 9999   899999999999    788999999999863

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.80  E-value=1.5e-19  Score=187.96  Aligned_cols=134  Identities=17%  Similarity=0.303  Sum_probs=116.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+...+|+.||||.+.....  ...+.+.+|+..  .++|+||+++++++...+..++||||++ |
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   86 (299)
T 2r3i_A            8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-Q   86 (299)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred             hhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEEccc-C
Confidence            3689999999999999987899999999975432  223567888877  3899999999999999999999999998 6


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.+++...  ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  151 (299)
T 2r3i_A           87 DLKKFMDASALTGIPLPLIKSYLFQLLQGLA-FCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  151 (299)
T ss_dssp             EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             CHHHHHHhhhccCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCCCCHHHeEEcCCCCEEECcchhhh
Confidence            999999754  56899999999999999999 9999   899999999999    78899999999875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.80  E-value=6.1e-20  Score=195.69  Aligned_cols=134  Identities=15%  Similarity=0.122  Sum_probs=108.3

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccCchhh-----------HHHHHHHHHH--hcCCCCcccEEEEEEc--
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSASSVQG-----------YKQFQAEVQY--IVHHKNLTTLVGYCDE--  599 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~~~~~-----------~~~f~~Ev~~--~l~H~NIv~l~g~~~~--  599 (678)
                      .+.||+|+||.||+|....   .+..||||++.......           ...+.+|+..  .++|+||+++++++..  
T Consensus        42 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~  121 (345)
T 2v62_A           42 GKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEF  121 (345)
T ss_dssp             EEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEES
T ss_pred             EeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccccc
Confidence            4789999999999999875   56789999997653211           1224455555  3799999999999987  


Q ss_pred             --CCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC--cEEEEe
Q 038969          600 --DTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN--IVKLIT  671 (678)
Q Consensus       600 --~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~--~vkI~D  671 (678)
                        ....++||||+ +|+|.+++.....+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++  .+||+|
T Consensus       122 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~kL~D  196 (345)
T 2v62_A          122 KGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLE-YIHE---NEYVHGDIKAANLLLGYKNPDQVYLAD  196 (345)
T ss_dssp             SSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEESSSTTSEEECC
T ss_pred             CCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeCCCcCHHHEEEccCCCCcEEEEe
Confidence              77899999999 9999999987678999999999999999999 9999   899999999999    445  999999


Q ss_pred             eCCcc
Q 038969          672 FSIIK  676 (678)
Q Consensus       672 FGlar  676 (678)
                      ||+|+
T Consensus       197 fg~a~  201 (345)
T 2v62_A          197 YGLSY  201 (345)
T ss_dssp             CTTCE
T ss_pred             CCCce
Confidence            99986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.2e-19  Score=211.02  Aligned_cols=134  Identities=17%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             hhhcccCCceEEEEEEEcc-CCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe-----eEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEF-NGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN-----MGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~-----~~LV~E  608 (678)
                      .+.||+|+||.||+|.+.. +|+.||||.+... .......|.+|+..  .++||||+++++++...+.     .+||||
T Consensus        85 ~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E  164 (681)
T 2pzi_A           85 KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVME  164 (681)
T ss_dssp             EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEE
Confidence            4789999999999999864 6899999998654 33445678888887  3899999999999987555     699999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      |+++|+|.+++..  .++|.+++.|+.|+++||+ |||+   .+||||||||+|   ..+.+||+|||+++.
T Consensus       165 ~~~g~~L~~~~~~--~l~~~~~~~~~~qi~~aL~-~lH~---~giiHrDlkp~NIll~~~~~kl~DFG~a~~  230 (681)
T 2pzi_A          165 YVGGQSLKRSKGQ--KLPVAEAIAYLLEILPALS-YLHS---IGLVYNDLKPENIMLTEEQLKLIDLGAVSR  230 (681)
T ss_dssp             CCCCEECC----C--CCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECSSCEEECCCTTCEE
T ss_pred             eCCCCcHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHH---CCCeecccChHHeEEeCCcEEEEecccchh
Confidence            9999999998765  7999999999999999999 9999   899999999999   666999999999873

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.80  E-value=4.5e-19  Score=187.14  Aligned_cols=129  Identities=17%  Similarity=0.279  Sum_probs=114.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC-CCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH-HKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|....+++.||||+++...   .+.+.+|+.++  ++ |+||+++++++..  ....++||||+++
T Consensus        41 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~  117 (330)
T 3nsz_A           41 VRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN  117 (330)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence            478999999999999998789999999997543   45678888773  55 9999999999987  6678999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC-cEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN-IVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~-~vkI~DFGlar  676 (678)
                      ++|.+++..   +++.++..++.|+++||+ |||+   .+|+||||||+|    .++ .+||+|||+|+
T Consensus       118 ~~l~~~~~~---~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~  179 (330)
T 3nsz_A          118 TDFKQLYQT---LTDYDIRFYMYEILKALD-YCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  179 (330)
T ss_dssp             CCHHHHGGG---CCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             hhHHHHHHh---CCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence            999999864   899999999999999999 9999   899999999999    344 89999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.80  E-value=1e-19  Score=206.81  Aligned_cols=132  Identities=13%  Similarity=0.130  Sum_probs=106.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC----------chhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS----------SVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~----------~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~L  605 (678)
                      ...+.|+.|.+..++...-|+.+|||.+...          .....++|.+|++++  + +|+||+++++++++.+..||
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yL  319 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWL  319 (569)
T ss_dssp             CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEE
T ss_pred             hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEE
Confidence            3456777777766665557889999999653          123356799999884  4 79999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          606 IYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||||++||+|.++|.....++..   +|+.||++||+ |+|+   .+||||||||+|    +++.+||+|||+||.
T Consensus       320 VMEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~-ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~  388 (569)
T 4azs_A          320 VMEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLA-ALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIVT  388 (569)
T ss_dssp             EEECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHH-HHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEES
T ss_pred             EEecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHH-HHHH---CCceeccCchHhEEECCCCCEEEeecccCee
Confidence            99999999999999987778765   58899999999 9999   999999999999    889999999999984

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.80  E-value=1.4e-19  Score=186.63  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=116.1

Q ss_pred             hhhcccCCceEEEEEEEccC---CEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|.....   +..||||.+... .....+.|.+|+..  .++||||+++++++.+ +..++||||++
T Consensus        17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~   95 (281)
T 3cc6_A           17 NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELYP   95 (281)
T ss_dssp             EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECCT
T ss_pred             EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecCC
Confidence            47899999999999987522   346999999765 33456778889887  4899999999999865 45789999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        96 ~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  161 (281)
T 3cc6_A           96 YGELGHYLERNKNSLKVLTLVLYSLQICKAMA-YLES---INCVHRDIAVRNILVASPECVKLGDFGLSR  161 (281)
T ss_dssp             TCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred             CCCHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCccceEEECCCCcEEeCccCCCc
Confidence            99999999754 56999999999999999999 9999   899999999999    78899999999986

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.79  E-value=2.3e-19  Score=190.65  Aligned_cols=133  Identities=17%  Similarity=0.259  Sum_probs=111.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHhcCCCCcccEEEEEEc----CCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYIVHHKNLTTLVGYCDE----DTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~l~H~NIv~l~g~~~~----~~~~~LV~Ey~~~Gs  614 (678)
                      ++||+|+||.||+|....+|+.||||++.... ...+++..+ ...++|+||+++++++..    +...++||||+++|+
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~e~~~~-~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~  112 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-KARQEVDHH-WQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGE  112 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESSH-HHHHHHHHH-HHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEE
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-HHHHHHHHH-HHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCC
Confidence            57999999999999998789999999997542 122222221 225899999999999865    455899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C---CCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H---KNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~---~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .   .+.+||+|||+|+.
T Consensus       113 L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~-~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~  180 (336)
T 3fhr_A          113 LFSRIQERGDQAFTEREAAEIMRDIGTAIQ-FLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE  180 (336)
T ss_dssp             HHHHHHTC-CCCCBHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCCCCHHHEEEEecCCCceEEEecccccee
Confidence            99999865  47999999999999999999 9999   899999999999    2   55699999999863

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.79  E-value=1.2e-19  Score=195.51  Aligned_cols=134  Identities=19%  Similarity=0.287  Sum_probs=105.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+.+.+|+..  .++||||+++++++...      ...++|+
T Consensus        34 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~  113 (367)
T 2fst_X           34 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT  113 (367)
T ss_dssp             EEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred             eeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEe
Confidence            37899999999999998878999999999653  33445678888887  38999999999998654      5689999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+ +++|.+++.. ..+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       114 e~~-~~~L~~~~~~-~~l~~~~~~~i~~qi~~aL~-~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~a~~  181 (367)
T 2fst_X          114 HLM-GADLNNIVKC-QKLTDDHVQFLIYQILRGLK-YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARH  181 (367)
T ss_dssp             ECC-CEECC------CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred             ccc-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence            999 6899998875 67999999999999999999 9999   899999999999    788999999999873

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.79  E-value=1.4e-19  Score=195.70  Aligned_cols=130  Identities=20%  Similarity=0.306  Sum_probs=109.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc----------------
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE----------------  599 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~----------------  599 (678)
                      .+.||+|+||.||+|....+|+.||||++......    ..+|+.+  .++|+||+++++++..                
T Consensus        12 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~   87 (383)
T 3eb0_A           12 GKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHN   87 (383)
T ss_dssp             EEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC---------------
T ss_pred             EEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCcccccccccccccc
Confidence            47899999999999999878999999998754322    2356666  4899999999999843                


Q ss_pred             ----------------------CCeeEEEEecCCCCCHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCc
Q 038969          600 ----------------------DTNMGLIYEFMAKGNLEEHLS----GANTLTWEARLRIATEAAQGSHSAFDQGCCPHI  653 (678)
Q Consensus       600 ----------------------~~~~~LV~Ey~~~GsL~~~L~----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~i  653 (678)
                                            ....++||||++ |+|.+.+.    ....+++..+..++.|+++||+ |||+   .+|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~gi  162 (383)
T 3eb0_A           88 KLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG-FIHS---LGI  162 (383)
T ss_dssp             ----------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHT---TTE
T ss_pred             cccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CcC
Confidence                                  334889999998 57777664    3478999999999999999999 9999   899


Q ss_pred             cccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          654 CESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       654 iHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      +||||||+|     +++.+||+|||+|+
T Consensus       163 ~H~Dikp~Nil~~~~~~~~kl~Dfg~a~  190 (383)
T 3eb0_A          163 CHRDIKPQNLLVNSKDNTLKLCDFGSAK  190 (383)
T ss_dssp             ECSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred             ccCccCHHHEEEcCCCCcEEEEECCCCc
Confidence            999999999     47889999999997

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.79  E-value=2.4e-19  Score=191.14  Aligned_cols=133  Identities=16%  Similarity=0.233  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+|+.||||.+.... .....++.+|+..  .++|+||+++++++...     ...++||||
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~   95 (353)
T 2b9h_A           16 KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQEL   95 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECC
T ss_pred             eeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEec
Confidence            478999999999999998789999999997543 3345677888887  48999999999998654     678999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +. |+|.+++.. ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        96 ~~-~~L~~~~~~-~~~~~~~~~~~~~qi~~~L~-~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           96 MQ-TDLHRVIST-QMLSDDHIQYFIYQTLRAVK-VLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             CS-EEHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             cC-ccHHHHHhh-cCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            97 699999876 57999999999999999999 9999   899999999999    78899999999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.79  E-value=1.2e-19  Score=192.96  Aligned_cols=135  Identities=18%  Similarity=0.257  Sum_probs=119.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-----------------HHHHHHHHHHh--cCCCCcccEEEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-----------------YKQFQAEVQYI--VHHKNLTTLVGYCD  598 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-----------------~~~f~~Ev~~~--l~H~NIv~l~g~~~  598 (678)
                      .+.||+|+||.||+|..  +|+.||||.+.......                 .+.|.+|+..+  ++||||+++++++.
T Consensus        36 ~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~  113 (348)
T 2pml_X           36 IRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIIT  113 (348)
T ss_dssp             EEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEE
T ss_pred             EEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            47899999999999998  89999999997542211                 17888998883  89999999999999


Q ss_pred             cCCeeEEEEecCCCCCHHHh------hcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          599 EDTNMGLIYEFMAKGNLEEH------LSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       599 ~~~~~~LV~Ey~~~GsL~~~------L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      ..+..++||||+++|+|.++      +..  ...+++..++.++.|+++||+ |||+.  .+|+||||||+|    .++.
T Consensus       114 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~~--~~i~H~dl~p~Nil~~~~~~  190 (348)
T 2pml_X          114 NYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFS-YIHNE--KNICHRDVKPSNILMDKNGR  190 (348)
T ss_dssp             SSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHH-HHHHT--SCEECCCCCGGGEEECTTSC
T ss_pred             eCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHH-HHhcc--CCEeecCCChHhEEEcCCCc
Confidence            99999999999999999999      665  478999999999999999999 99972  589999999999    7889


Q ss_pred             EEEEeeCCccc
Q 038969          667 VKLITFSIIKN  677 (678)
Q Consensus       667 vkI~DFGlar~  677 (678)
                      +||+|||+++.
T Consensus       191 ~kl~dfg~~~~  201 (348)
T 2pml_X          191 VKLSDFGESEY  201 (348)
T ss_dssp             EEECCCTTCEE
T ss_pred             EEEeccccccc
Confidence            99999999863

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.79  E-value=1.7e-19  Score=188.14  Aligned_cols=134  Identities=19%  Similarity=0.262  Sum_probs=114.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc----hhhHHHHHHHHHH--hcCCCCcccEEEEEE--cCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS----VQGYKQFQAEVQY--IVHHKNLTTLVGYCD--EDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~--~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||++....+++.||+|++....    ....+.+.+|+..  .++|+||+++++++.  +....++||||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   89 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY   89 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEEC
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehh
Confidence            478999999999999988788999999997642    2345678889888  389999999999984  45678999999


Q ss_pred             CCCCCHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSG--ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~--~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++| |.+++..  ...+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus        90 ~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~  157 (305)
T 2wtk_C           90 CVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLE-YLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAE  157 (305)
T ss_dssp             CSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             ccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCCcccEEEcCCCcEEeecccccc
Confidence            9876 7777754  367999999999999999999 9999   899999999999    78899999999986

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.79  E-value=8.7e-20  Score=196.50  Aligned_cols=135  Identities=8%  Similarity=0.000  Sum_probs=102.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hc--CCCCcccEE-------EEEEcC---
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IV--HHKNLTTLV-------GYCDED---  600 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l--~H~NIv~l~-------g~~~~~---  600 (678)
                      .+.||+|+||.||+|....+|+.||||++.....   ...+.+.+|+..  .+  +||||++++       +++...   
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~  146 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQP  146 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSC
T ss_pred             eeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCC
Confidence            4789999999999999987899999999987532   334567777544  23  599988755       444432   


Q ss_pred             --------------CeeEEEEecCCCCCHHHhhcCC-CCCCHHHH------HHHHHHHHHHHHHhHhcCCCCCccccCCC
Q 038969          601 --------------TNMGLIYEFMAKGNLEEHLSGA-NTLTWEAR------LRIATEAAQGSHSAFDQGCCPHICESSSS  659 (678)
Q Consensus       601 --------------~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~------l~ia~~ia~gL~~yLH~~~~~~iiHrDlk  659 (678)
                                    ...+||||||+ |+|.+++... ..+.+..+      +.++.|+++||+ |||+   .+|+|||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~-~LH~---~~ivHrDik  221 (371)
T 3q60_A          147 PFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAA-NLQS---KGLVHGHFT  221 (371)
T ss_dssp             SSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH-HHHH---TTEEETTCS
T ss_pred             CeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHH-HHHH---CCCccCcCC
Confidence                          33799999999 8999999753 34566667      888999999999 9999   899999999


Q ss_pred             CCC----CCCcEEEEeeCCccc
Q 038969          660 SNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       660 ~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|    .++.+||+|||+|+.
T Consensus       222 p~NIll~~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          222 PDNLFIMPDGRLMLGDVSALWK  243 (371)
T ss_dssp             GGGEEECTTSCEEECCGGGEEE
T ss_pred             HHHEEECCCCCEEEEecceeee
Confidence            999    788999999999874

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.79  E-value=2.9e-19  Score=191.91  Aligned_cols=133  Identities=16%  Similarity=0.245  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcC-----CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDED-----TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~-----~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+++.||||++.... ....+.+.+|+.+  .++||||+++++++...     ...++||||
T Consensus        32 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~  111 (364)
T 3qyz_A           32 LSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDL  111 (364)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred             EEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcc
Confidence            478999999999999998889999999997543 3345678889888  48999999999999654     468999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +. |+|.+++.. ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus       112 ~~-~~L~~~l~~-~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  176 (364)
T 3qyz_A          112 ME-TDLYKLLKT-QHLSNDHICYFLYQILRGLK-YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLAR  176 (364)
T ss_dssp             CS-EEHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             cC-cCHHHHHHh-CCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCChHhEEECCCCCEEEEeCcceE
Confidence            97 599999875 56999999999999999999 9999   899999999999    78899999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.79  E-value=4.7e-19  Score=186.99  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=116.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||||.+.... .....++..|+..   .++||||+++++++...+..++||||+++ 
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-  105 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST-  105 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-
T ss_pred             hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-
Confidence            368999999999999998789999999997653 3344566666653   37899999999999999999999999985 


Q ss_pred             CHHHhhcC-----CCCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSG-----ANTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~-----~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++..     ...+++..+..++.|+++||. |||+   . +|+||||||+|    .++.+||+|||+++.
T Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~  175 (327)
T 3aln_A          106 SFDKFYKYVYSVLDDVIPEEILGKITLATVKALN-HLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQ  175 (327)
T ss_dssp             EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH-HHHH---HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred             ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHH-HHhc---cCCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence            88888752     467999999999999999999 9999   6 89999999999    888999999999863

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.79  E-value=3.5e-19  Score=191.85  Aligned_cols=133  Identities=18%  Similarity=0.272  Sum_probs=116.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCee------EEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNM------GLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~------~LV~  607 (678)
                      .+.||+|+||.||+|....+|+.||||++...  .....+++.+|+..  .++||||+++++++...+..      ++||
T Consensus        47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  126 (371)
T 4exu_A           47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  126 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEE
T ss_pred             EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEE
Confidence            46899999999999999888999999999764  33345678888887  48999999999999876654      9999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+. |+|.+++..  .+++.++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       127 e~~~-~~l~~~~~~--~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~  193 (371)
T 4exu_A          127 PFMQ-TDLQKIMGM--EFSEEKIQYLVYQMLKGLK-YIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARH  193 (371)
T ss_dssp             ECCC-EEHHHHTTS--CCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred             cccc-ccHHHHhhc--CCCHHHHHHHHHHHHHHHH-HHHH---CCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence            9997 699998864  5999999999999999999 9999   899999999999    788999999999863

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.79  E-value=5.3e-19  Score=194.40  Aligned_cols=133  Identities=21%  Similarity=0.273  Sum_probs=114.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--------cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--------VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--------l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+++.||||++.... ...+++.+|+.++        ..|+||+++++++...+..++||||
T Consensus       102 ~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~  180 (429)
T 3kvw_A          102 LKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFEL  180 (429)
T ss_dssp             EEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECC
T ss_pred             EEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEec
Confidence            478999999999999998789999999997643 3345566666552        3688999999999999999999999


Q ss_pred             CCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc--EEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI--VKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~--vkI~DFGlar  676 (678)
                      +. |+|.+++...  ..+++..++.|+.|+++||+ |||+   .+||||||||+|    .++.  +||+|||+|+
T Consensus       181 ~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          181 LS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLD-ALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             CC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHH---HTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             cC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence            96 6999998754  45999999999999999999 9999   899999999999    4444  9999999986

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.78  E-value=4e-19  Score=189.79  Aligned_cols=133  Identities=18%  Similarity=0.268  Sum_probs=116.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe------eEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN------MGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~------~~LV~  607 (678)
                      .+.||+|+||.||+|....+|+.||||.+...  .....+++.+|+..  .++||||+++++++.....      .++||
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~  108 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  108 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred             eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEe
Confidence            46899999999999999878999999999754  23345678888877  4899999999999977654      49999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+. |+|.+++..  .+++.++..++.|+++||+ |||+   .+|+||||||+|    +++.+||+|||+++.
T Consensus       109 e~~~-~~l~~~~~~--~~~~~~~~~i~~qi~~al~-~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  175 (353)
T 3coi_A          109 PFMQ-TDLQKIMGL--KFSEEKIQYLVYQMLKGLK-YIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARH  175 (353)
T ss_dssp             ECCS-EEGGGTTTS--CCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred             cccc-CCHHHHhcC--CCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence            9997 699988864  5999999999999999999 9999   899999999999    788999999999863

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.78  E-value=4.7e-19  Score=204.88  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=117.4

Q ss_pred             hhhcccCCceEEEEEEEcc---CCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEF---NGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~---~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|....   .+..||||.+.... ....+.|.+|+..  .++||||+++++++. .+..++||||++
T Consensus       395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~  473 (656)
T 2j0j_A          395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCT  473 (656)
T ss_dssp             EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcCC
Confidence            4689999999999998853   34689999987643 3445678889887  489999999999985 467899999999


Q ss_pred             CCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++... ..+++..++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus       474 ~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          474 LGELRSFLQVRKFSLDLASLILYAYQLSTALA-YLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             TCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             CCcHHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCccccccchHhEEEeCCCCEEEEecCCCee
Confidence            99999999754 57999999999999999999 9999   899999999999    788999999999873

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.78  E-value=6.7e-20  Score=192.09  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=112.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh------hHHHHHHHHHH--hc----CCCCcccEEEEEEcCCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ------GYKQFQAEVQY--IV----HHKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~------~~~~f~~Ev~~--~l----~H~NIv~l~g~~~~~~~~~L  605 (678)
                      .+.||+|+||.||+|+...+++.||||++......      ....+.+|+..  .+    +|+||+++++++...+..++
T Consensus        36 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~  115 (312)
T 2iwi_A           36 GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFML  115 (312)
T ss_dssp             EEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEE
T ss_pred             eeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEE
Confidence            47899999999999998778899999999764321      12234456655  24    89999999999999899999


Q ss_pred             EEec-CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          606 IYEF-MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       606 V~Ey-~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      |||| +++++|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|     +++.+||+|||+++
T Consensus       116 v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~  188 (312)
T 2iwi_A          116 VLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQ-HCHS---RGVVHRDIKDENILIDLRRGCAKLIDFGSGA  188 (312)
T ss_dssp             EEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---HTEECCCCSGGGEEEETTTTEEEECCCSSCE
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecCCChhhEEEeCCCCeEEEEEcchhh
Confidence            9999 789999999987678999999999999999999 9999   899999999999     57889999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.78  E-value=5.3e-19  Score=185.42  Aligned_cols=134  Identities=21%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cC--CCCcccEEEEEEcCCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VH--HKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~--H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||++... +++.||||.+...  .....+.+.+|+..+  ++  |+||+++++++...+..++||| +.
T Consensus        33 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~  110 (313)
T 3cek_A           33 LKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG  110 (313)
T ss_dssp             EEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CC
T ss_pred             EEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cC
Confidence            478999999999999986 7899999999754  334567788888773  54  6999999999999999999999 66


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.+++.++.|+++||+ |||+   .+|+||||||+|   .++.+||+|||+++.
T Consensus       111 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~  175 (313)
T 3cek_A          111 NIDLNSWLKKKKSIDPWERKSYWKNMLEAVH-TIHQ---HGIVHSDLKPANFLIVDGMLKLIDFGIANQ  175 (313)
T ss_dssp             SEEHHHHHHHCSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEEETTEEEECCCSSSCC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCceecCCCcccEEEECCeEEEeecccccc
Confidence            8899999987788999999999999999999 9999   899999999999   778999999999863

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.78  E-value=7.1e-19  Score=187.97  Aligned_cols=134  Identities=19%  Similarity=0.252  Sum_probs=100.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe-------eEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN-------MGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~-------~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+|+.||||++...... ...+.+|+..  .++||||+++++++...+.       .++|||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e  106 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF-RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVME  106 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTC-CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc-cHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEee
Confidence            47899999999999999878999999998654322 2344455544  3799999999999965433       789999


Q ss_pred             cCCCCCHHHhh----cCCCCCCHHHHHHHHHHHHHHHHHhHh--cCCCCCccccCCCCCC----C-CCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHL----SGANTLTWEARLRIATEAAQGSHSAFD--QGCCPHICESSSSSNP----H-KNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L----~~~~~l~~~~~l~ia~~ia~gL~~yLH--~~~~~~iiHrDlk~~N----~-~~~vkI~DFGlar~  677 (678)
                      |+++ +|.+.+    .....+++..+..++.|++.||+ |||  +   .+|+||||||+|    . ++.+||+|||+|+.
T Consensus       107 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~~~---~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~  181 (360)
T 3e3p_A          107 YVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIG-CLHLPS---VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKK  181 (360)
T ss_dssp             CCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHTSTT---TCCBCSCCCGGGEEEETTTTEEEECCCTTCBC
T ss_pred             cccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHH-HHhCCC---CCeecCcCCHHHEEEeCCCCcEEEeeCCCcee
Confidence            9986 444433    34578999999999999999999 999  6   899999999999    4 78999999999873

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.78  E-value=1.3e-19  Score=193.63  Aligned_cols=129  Identities=11%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             hhhcccCCceEEEEEEEcc--------CCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCccc---------------
Q 038969          538 EKVIGKGGFGTVYHGYLEF--------NGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTT---------------  592 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~--------~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~---------------  592 (678)
                      .+.||+|+||.||+|+...        +++.||||++...     +.+.+|+..  .++|+||++               
T Consensus        47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             EEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             EEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            4789999999999999875        3789999999754     346667666  378888877               


Q ss_pred             EEEEEEc-CCeeEEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          593 LVGYCDE-DTNMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       593 l~g~~~~-~~~~~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      +++++.. .+..+|||||+ +|+|.+++...  ..+++.+++.|+.|+++||+ |||+   .+|+||||||+|    .++
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dikp~NIl~~~~~  196 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALE-FLHE---NEYVHGNVTAENIFVDPED  196 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCSCCCGGGEEEETTE
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHH-HHHh---CCccCCCCCHHHEEEcCCC
Confidence            7788876 78899999999 99999999865  67999999999999999999 9999   899999999999    555


Q ss_pred             --cEEEEeeCCcc
Q 038969          666 --IVKLITFSIIK  676 (678)
Q Consensus       666 --~vkI~DFGlar  676 (678)
                        .+||+|||+|+
T Consensus       197 ~~~~kl~Dfg~a~  209 (352)
T 2jii_A          197 QSQVTLAGYGFAF  209 (352)
T ss_dssp             EEEEEECCGGGCB
T ss_pred             CceEEEecCccee
Confidence              89999999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.78  E-value=6.4e-19  Score=182.63  Aligned_cols=132  Identities=19%  Similarity=0.329  Sum_probs=110.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEE-EcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYC-DEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~-~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+++.||||++......  .++.+|+.+  .++|++++..++++ ...+..++||||+ +|+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~   90 (296)
T 4hgt_A           14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPS   90 (296)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             eeeecCCCCeEEEEEEEcCCCceEEEEeecccccc--hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCC
Confidence            47899999999999998778999999987654322  245666665  46777666666555 6778889999999 999


Q ss_pred             HHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          615 LEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      |.+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|       +.+.+||+|||+|+
T Consensus        91 L~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~  156 (296)
T 4hgt_A           91 LEDLFNFCSRKFSLKTVLLLADQMISRIE-YIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCccce
Confidence            9999974 367999999999999999999 9999   899999999999       56789999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.77  E-value=4.4e-19  Score=194.49  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=108.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....    .+.+|+++  .++|+|||++++++...      ...++||||
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~  134 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY  134 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhc
Confidence            4789999999999999987899999999875432    12346655  48999999999998532      236799999


Q ss_pred             CCCCCHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLS----GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~----~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      +++ +|.+.+.    ....+++..+..++.|+++||+ |||+   .+|+||||||+|     +.+.+||+|||+|+.
T Consensus       135 ~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~  206 (420)
T 1j1b_A          135 VPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA-YIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  206 (420)
T ss_dssp             CCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             ccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCccccCCChhhEEEeCCCCeEEeccchhhhh
Confidence            986 6666553    3478999999999999999999 9999   899999999999     346789999999973

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.77  E-value=1.4e-18  Score=180.21  Aligned_cols=132  Identities=19%  Similarity=0.329  Sum_probs=112.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEE-EcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYC-DEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~-~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+|+.||||++......  +++.+|+..  .++|++++..++++ ...+..++||||+ +|+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~   90 (296)
T 3uzp_A           14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPS   90 (296)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC--CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch--hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCC
Confidence            47899999999999998778999999998765432  356777766  47777766655555 6678889999999 899


Q ss_pred             HHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          615 LEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      |.+++.. ...+++.+++.++.|+++||+ |||+   .+|+||||||+|       +++.+||+|||+|+
T Consensus        91 L~~~~~~~~~~~~~~~~~~i~~qi~~~l~-~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  156 (296)
T 3uzp_A           91 LEDLFNFCSRKFSLKTVLLLADQMISRIE-YIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence            9999973 467999999999999999999 9999   899999999999       46789999999986

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.77  E-value=3.3e-19  Score=184.47  Aligned_cols=134  Identities=24%  Similarity=0.387  Sum_probs=108.7

Q ss_pred             hhhcccCCceEEEEEEEcc-CC--EEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEF-NG--TQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~-~g--~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|.... ++  ..||||+++..   .....+++.+|+..  .++|+||+++++++.... .++||||
T Consensus        23 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e~  101 (291)
T 1u46_A           23 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTEL  101 (291)
T ss_dssp             EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEEC
T ss_pred             eeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEec
Confidence            4789999999999998642 23  36999999754   22345678889887  489999999999987654 8999999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +++|+|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  169 (291)
T 1u46_A          102 APLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMG-YLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMR  169 (291)
T ss_dssp             CTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             ccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHH-HHHh---CCcccCCCchheEEEcCCCCEEEccccccc
Confidence            9999999999753 56999999999999999999 9999   899999999999    78899999999986

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.77  E-value=9.9e-19  Score=184.50  Aligned_cols=133  Identities=12%  Similarity=0.259  Sum_probs=114.0

Q ss_pred             hhhcccCCceEEEEEEE-ccCCEEEEEEEeccCchhhHHHHHHHHHHh--c------CCCCcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYL-EFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V------HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~-~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l------~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|.. ..+++.||||+++... ...+.+.+|+..+  +      .|++++++++++...+..++|||
T Consensus        19 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   97 (339)
T 1z57_A           19 VDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFE   97 (339)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEc
Confidence            47899999999999987 4478999999997543 3345677777662  3      35569999999999999999999


Q ss_pred             cCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-------------------
Q 038969          609 FMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-------------------  663 (678)
Q Consensus       609 y~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-------------------  663 (678)
                      |+ +|+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .                   
T Consensus        98 ~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~  172 (339)
T 1z57_A           98 LL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVN-FLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLI  172 (339)
T ss_dssp             CC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESCCCEEEEEC----CEEEEES
T ss_pred             CC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH-HHHH---CCCcCCCCCHHHEEEeccccccccCCcccccccccc
Confidence            99 88999999754  36899999999999999999 9999   899999999999    3                   


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      ++.+||+|||+|+
T Consensus       173 ~~~~kl~Dfg~~~  185 (339)
T 1z57_A          173 NPDIKVVDFGSAT  185 (339)
T ss_dssp             CCCEEECCCSSCE
T ss_pred             CCCceEeeCcccc
Confidence            5679999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.77  E-value=1.9e-19  Score=188.99  Aligned_cols=132  Identities=24%  Similarity=0.392  Sum_probs=114.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|...   ..||+|.++...  ....+.|.+|+..  .++|+||+++++++...+..++||||+++|
T Consensus        38 ~~~lg~G~~g~V~~~~~~---~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~  114 (319)
T 2y4i_B           38 GELIGKGRFGQVYHGRWH---GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGR  114 (319)
T ss_dssp             CCBCCCSSSSEEEEEEES---SSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSE
T ss_pred             eeEeccCCceEEEEEEEc---CeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCC
Confidence            478999999999999875   259999987542  2233557777777  489999999999999999999999999999


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      +|.+++... ..+++.+++.++.|+++||+ |||+   .+|+||||||+|   +++.+||+|||+|+
T Consensus       115 ~L~~~l~~~~~~~~~~~~~~i~~qi~~al~-~lH~---~~i~H~dlkp~NIl~~~~~~~l~Dfg~~~  177 (319)
T 2y4i_B          115 TLYSVVRDAKIVLDVNKTRQIAQEIVKGMG-YLHA---KGILHKDLKSKNVFYDNGKVVITDFGLFS  177 (319)
T ss_dssp             EHHHHTTSSCCCCCSHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCSTTEEEC--CCEECCCSCCC
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHh---CCccccCCChhhEEEeCCCEEEeecCCcc
Confidence            999999865 47999999999999999999 9999   899999999999   88899999999875

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.77  E-value=8.2e-19  Score=189.67  Aligned_cols=119  Identities=16%  Similarity=0.243  Sum_probs=100.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC--------CCCcccEEEEEE----cCCee
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH--------HKNLTTLVGYCD----EDTNM  603 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~--------H~NIv~l~g~~~----~~~~~  603 (678)
                      .+.||+|+||.||+|+...+++.||||++.... ...+.+.+|+.++  ++        |+||+++++++.    .....
T Consensus        42 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~  120 (397)
T 1wak_A           42 IRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI  120 (397)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEE
T ss_pred             EEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceE
Confidence            478999999999999998789999999997542 3456677887762  32        888999999987    56689


Q ss_pred             EEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC
Q 038969          604 GLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP  662 (678)
Q Consensus       604 ~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N  662 (678)
                      +|||||+ +|+|.+++...  ..+++.+++.|+.|+++||+ |||+   . +|+||||||+|
T Consensus       121 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~givHrDikp~N  177 (397)
T 1wak_A          121 CMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLD-YLHT---KCRIIHTDIKPEN  177 (397)
T ss_dssp             EEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCEECCCCSGGG
T ss_pred             EEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HHHH---hCCEecCCCCHHH
Confidence            9999999 56776666533  57999999999999999999 9999   6 89999999999

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.77  E-value=3.6e-19  Score=187.67  Aligned_cols=135  Identities=19%  Similarity=0.252  Sum_probs=116.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchh------hHHHHHHHHHH--hc--CCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQ------GYKQFQAEVQY--IV--HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~------~~~~f~~Ev~~--~l--~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|....+++.||||.+......      ..+.+..|+.+  .+  .|+||+++++++...+..++||
T Consensus        48 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~  127 (320)
T 3a99_A           48 GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLIL  127 (320)
T ss_dssp             EEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEE
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEE
Confidence            47899999999999998878999999999764221      12345556655  34  3799999999999999999999


Q ss_pred             ecCCC-CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          608 EFMAK-GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       608 Ey~~~-GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      ||+.+ ++|.+++.....+++..++.++.|+++||+ |||+   .+|+||||||+|     +++.+||+|||+++
T Consensus       128 e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          128 ERPEPVQDLFDFITERGALQEELARSFFWQVLEAVR-HCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             ECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            99986 899999987778999999999999999999 9999   899999999999     46899999999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.77  E-value=8.5e-19  Score=184.57  Aligned_cols=135  Identities=19%  Similarity=0.260  Sum_probs=112.9

Q ss_pred             hhhcccCCceEEEEEEEc-cCCEEEEEEEeccCch--hhHHHHHHHHHH--h---cCCCCcccEEEEEE-----cCCeeE
Q 038969          538 EKVIGKGGFGTVYHGYLE-FNGTQVAVKMLSASSV--QGYKQFQAEVQY--I---VHHKNLTTLVGYCD-----EDTNMG  604 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~---l~H~NIv~l~g~~~-----~~~~~~  604 (678)
                      .+.||+|+||.||+|... .+|+.||||++.....  .....+.+|+..  .   ++||||+++++++.     .....+
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~   95 (326)
T 1blx_A           16 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   95 (326)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred             eeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEE
Confidence            478999999999999984 4789999999865321  112345556554  1   48999999999997     566789


Q ss_pred             EEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          605 LIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       605 LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +||||++ |+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+++.
T Consensus        96 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~  169 (326)
T 1blx_A           96 LVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD-FLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARI  169 (326)
T ss_dssp             EEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             EEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HHHH---CCceeccCCHHHeEEcCCCCEEEecCccccc
Confidence            9999998 6999999754  45999999999999999999 9999   899999999999    788999999999863

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.77  E-value=9.1e-19  Score=190.87  Aligned_cols=131  Identities=15%  Similarity=0.227  Sum_probs=105.5

Q ss_pred             hhcccCCceEEEEEEEc--cCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLE--FNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~--~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      ++||+|+||.||+|+.+  .+++.||||++.....  ...+.+|+.+  .++||||+++++++..  ....+|||||++ 
T Consensus        27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-  103 (405)
T 3rgf_A           27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-  103 (405)
T ss_dssp             CCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-
T ss_pred             cEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-
Confidence            57999999999999975  3578999999976432  2457778877  4999999999999954  678999999997 


Q ss_pred             CCHHHhhcCC---------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--------CCCcEEEEeeCCc
Q 038969          613 GNLEEHLSGA---------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--------HKNIVKLITFSII  675 (678)
Q Consensus       613 GsL~~~L~~~---------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--------~~~~vkI~DFGla  675 (678)
                      |+|.+++...         ..+++..++.|+.|+++||+ |||+   .+|+||||||+|        ..+.+||+|||+|
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~-~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a  179 (405)
T 3rgf_A          104 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIH-YLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFA  179 (405)
T ss_dssp             EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECCSSTTTTCEEECCTTCC
T ss_pred             CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHH-HHHh---CCEeCCCcCHHHeEEecCCCCCCcEEEEECCCc
Confidence            5888887521         35999999999999999999 9999   899999999999        3468999999998


Q ss_pred             c
Q 038969          676 K  676 (678)
Q Consensus       676 r  676 (678)
                      +
T Consensus       180 ~  180 (405)
T 3rgf_A          180 R  180 (405)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.76  E-value=1.4e-18  Score=193.55  Aligned_cols=133  Identities=19%  Similarity=0.284  Sum_probs=112.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCC-CCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHH-KNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H-~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+++.||||++......  .++..|+.+  .++| +++..+..++...+..+|||||+ +|+
T Consensus        12 ~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~s   88 (483)
T 3sv0_A           12 GRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPS   88 (483)
T ss_dssp             CCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCC
Confidence            47899999999999998778999999998764332  235566655  3554 67777777778889999999999 999


Q ss_pred             HHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          615 LEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      |.+++.. ...+++.+++.|+.||++||+ |||+   .+||||||||+|       ..+.+||+|||+|+.
T Consensus        89 L~~ll~~~~~~l~~~~~~~i~~qi~~aL~-yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~  155 (483)
T 3sv0_A           89 LEDLFNFCSRKLSLKTVLMLADQMINRVE-FVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK  155 (483)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence            9999974 367999999999999999999 9999   899999999999       467899999999873

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.76  E-value=3.2e-18  Score=185.03  Aligned_cols=136  Identities=19%  Similarity=0.284  Sum_probs=113.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCC-----CcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHK-----NLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~-----NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|....+++.||||+++... ....++..|+..+  + +|+     +++++++++...+..+|||||
T Consensus        59 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~  137 (382)
T 2vx3_A           59 DSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEM  137 (382)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEec
Confidence            378999999999999998789999999997543 3345566666552  3 344     599999999999999999999


Q ss_pred             CCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      ++ |+|.+++...  ..+++..+..++.|+++||+ |||. ...+|+||||||+|      .++.+||+|||+|+.
T Consensus       138 ~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~-~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~  210 (382)
T 2vx3_A          138 LS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALL-FLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQ  210 (382)
T ss_dssp             CC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             CC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHH-Hhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccCcee
Confidence            96 5999999754  56999999999999999999 9995 12689999999999      367899999999863

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=180.08  Aligned_cols=134  Identities=14%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|....+|+.||||++..... ....++..|...   .++||||+++++++...+..++||||+ ++
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~  108 (318)
T 2dyl_A           30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GT  108 (318)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SE
T ss_pred             cceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CC
Confidence            3689999999999999987899999999976532 233344444332   478999999999999999999999999 44


Q ss_pred             CHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+..+... ...+++..++.++.|+++||+ |||+   . +|+||||||+|    .++.+||+|||+++
T Consensus       109 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  173 (318)
T 2dyl_A          109 CAEKLKKRMQGPIPERILGKMTVAIVKALY-YLKE---KHGVIHRDVKPSNILLDERGQIKLCDFGISG  173 (318)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHH---HHCCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             cHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHHh---hCCEEeCCCCHHHEEECCCCCEEEEECCCch
Confidence            55555442 367999999999999999999 9998   5 89999999999    78899999999985

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.75  E-value=2.7e-18  Score=186.57  Aligned_cols=131  Identities=22%  Similarity=0.308  Sum_probs=105.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCe------eEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTN------MGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~------~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.. .+..||+|++.......    .+|+.+  .++|+||+++++++...+.      .++||||
T Consensus        45 ~~~lG~G~~g~V~~a~~~-~~~~~aikk~~~~~~~~----~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~  119 (394)
T 4e7w_A           45 CKVIGNGSFGVVFQAKLV-ESDEVAIKKVLQDKRFK----NRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY  119 (394)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEEEEEEECCTTSC----CHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEEC
T ss_pred             eEEEeeCCCeEEEEEEEC-CCCeEEEEEEecCcchH----HHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeec
Confidence            478999999999999987 55669999886543221    245555  5899999999999965333      7899999


Q ss_pred             CCCCCHHHhh---cCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHL---SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L---~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ++++.+....   .....+++..+..++.|+++||+ |||+   .+|+||||||+|     .++.+||+|||+|+.
T Consensus       120 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~-~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~  191 (394)
T 4e7w_A          120 VPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLA-YIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI  191 (394)
T ss_dssp             CSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             cCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence            9875433322   23467999999999999999999 9999   899999999999     578999999999863

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.74  E-value=2.5e-18  Score=189.27  Aligned_cols=131  Identities=19%  Similarity=0.188  Sum_probs=106.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .++||+|+||+||.+... +|+.||||++....   .+.+.+|+.++   .+||||+++++++...+..+||||||. |+
T Consensus        20 ~~~LG~G~~g~V~~~~~~-~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gs   94 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSF-QGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LN   94 (434)
T ss_dssp             EEEEEECSTTCEEEEEES-SSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EE
T ss_pred             cCeEeeCCCeEEEEEEEE-CCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CC
Confidence            368999999999876544 79999999987532   34567777763   589999999999999999999999995 69


Q ss_pred             HHHhhcCCCC-------CCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC-------------CcEEEE
Q 038969          615 LEEHLSGANT-------LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK-------------NIVKLI  670 (678)
Q Consensus       615 L~~~L~~~~~-------l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~-------------~~vkI~  670 (678)
                      |.+++.....       .++..++.|+.|+++||+ |||+   .+|+||||||+|    ..             ..+||+
T Consensus        95 L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~  170 (434)
T 2rio_A           95 LQDLVESKNVSDENLKLQKEYNPISLLRQIASGVA-HLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILIS  170 (434)
T ss_dssp             HHHHHHTC------------CCHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEEC
T ss_pred             HHHHHhccCCCchhhhhccchhHHHHHHHHHHHHH-HHHH---CCccccCCChHhEEEecCcccccccccCCCceEEEEc
Confidence            9999986522       134456789999999999 9999   899999999999    32             379999


Q ss_pred             eeCCccc
Q 038969          671 TFSIIKN  677 (678)
Q Consensus       671 DFGlar~  677 (678)
                      |||+|+.
T Consensus       171 DFG~a~~  177 (434)
T 2rio_A          171 DFGLCKK  177 (434)
T ss_dssp             CCTTCEE
T ss_pred             cccccee
Confidence            9999873

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.74  E-value=2.4e-18  Score=184.69  Aligned_cols=133  Identities=15%  Similarity=0.192  Sum_probs=112.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC-----------CCCcccEEEEEEcCC---
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH-----------HKNLTTLVGYCDEDT---  601 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~-----------H~NIv~l~g~~~~~~---  601 (678)
                      .+.||+|+||.||+|+...+++.||||++.... ...+.+.+|+..+  ++           |+||+++++++...+   
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  102 (373)
T 1q8y_A           24 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG  102 (373)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred             EEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCC
Confidence            478999999999999998789999999997543 3345667776652  33           899999999997644   


Q ss_pred             -eeEEEEecCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCC-CccccCCCCCC----C------CCcE
Q 038969          602 -NMGLIYEFMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCP-HICESSSSSNP----H------KNIV  667 (678)
Q Consensus       602 -~~~LV~Ey~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~-~iiHrDlk~~N----~------~~~v  667 (678)
                       ..++||||+ +|+|.+++...  ..+++..++.++.|+++||+ |||+   . +|+||||||+|    .      ...+
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~-~lH~---~~~ivH~Dikp~NIll~~~~~~~~~~~~  177 (373)
T 1q8y_A          103 VHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLD-YMHR---RCGIIHTDIKPENVLMEIVDSPENLIQI  177 (373)
T ss_dssp             EEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHH-HHHh---cCCEEecCCChHHeEEeccCCCcCcceE
Confidence             789999999 88999999753  56999999999999999999 9999   6 89999999999    1      1279


Q ss_pred             EEEeeCCcc
Q 038969          668 KLITFSIIK  676 (678)
Q Consensus       668 kI~DFGlar  676 (678)
                      ||+|||+|+
T Consensus       178 kl~Dfg~a~  186 (373)
T 1q8y_A          178 KIADLGNAC  186 (373)
T ss_dssp             EECCCTTCE
T ss_pred             EEccccccc
Confidence            999999986

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.74  E-value=1e-18  Score=199.83  Aligned_cols=136  Identities=21%  Similarity=0.246  Sum_probs=118.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEc------CCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE------DTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~------~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....+|+.||||++... .....+.|.+|+.+  .++||||+++++++..      .+..++|||
T Consensus        19 ~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmE   98 (676)
T 3qa8_A           19 KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAME   98 (676)
T ss_dssp             CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEE
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEE
Confidence            47899999999999998778999999998764 34456778889888  4899999999999755      677899999


Q ss_pred             cCCCCCHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC---cEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGA---NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN---IVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~---~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~---~vkI~DFGlar~  677 (678)
                      |+++|+|.+++...   ..+++..++.|+.|+++||+ |||+   .+|+||||||+|    .++   .+||+|||+|+.
T Consensus        99 y~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~-yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~  173 (676)
T 3qa8_A           99 YCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALR-YLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE  173 (676)
T ss_dssp             CCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHH-HHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCB
T ss_pred             eCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCCccCCCCHHHeEeecCCCceeEEEcccccccc
Confidence            99999999999864   36999999999999999999 9999   899999999999    333   499999999864

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.73  E-value=3.4e-18  Score=188.09  Aligned_cols=131  Identities=17%  Similarity=0.164  Sum_probs=106.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .++||+|+||.|+..... +|+.||||++......   .+.+|+.+  .+ +|||||++++++.+.+..+||||||+ |+
T Consensus        29 ~~~LG~G~~G~V~~~~~~-~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~  103 (432)
T 3p23_A           29 KDVLGHGAEGTIVYRGMF-DNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-AT  103 (432)
T ss_dssp             EEEEEECGGGCEEEEEES-SSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EE
T ss_pred             CCeeecCcCEEEEEEEEe-CCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CC
Confidence            368999999996644433 8899999999754322   24456665  25 89999999999999999999999996 69


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---C----C--CcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---H----K--NIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~----~--~~vkI~DFGlar~  677 (678)
                      |.+++... ..+.+.+++.++.|+++||+ |||+   .+|+||||||+|   .    +  ..+||+|||+|+.
T Consensus       104 L~~~l~~~~~~~~~~~~~~i~~qi~~aL~-~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A          104 LQEYVEQKDFAHLGLEPITLLQQTTSGLA-HLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             HHHHHHSSSCCCCSSCHHHHHHHHHHHHH-HHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             HHHHHHhcCCCccchhHHHHHHHHHHHHH-HHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            99999865 34666677899999999999 9999   899999999999   1    2  3588999999863

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.73  E-value=3.1e-18  Score=193.53  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=100.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--------hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .++||+|+||.||+|..  .++.+|+|.......        ...+.|.+|+.+  .++||||+++..++...+..+|||
T Consensus       341 ~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             -------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            36899999999999954  678899998754321        123458889888  489999997777777788889999


Q ss_pred             ecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCCccc
Q 038969          608 EFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGlar~  677 (678)
                      ||+++|+|.+++..        ++.++.|+++||+ |||+   .+|+||||||+|   .. .+||+|||+|+.
T Consensus       419 E~~~ggsL~~~l~~--------~~~i~~qi~~aL~-~LH~---~gIiHrDiKp~NILl~~-~~kL~DFGla~~  478 (540)
T 3en9_A          419 SYINGKLAKDVIED--------NLDIAYKIGEIVG-KLHK---NDVIHNDLTTSNFIFDK-DLYIIDFGLGKI  478 (540)
T ss_dssp             ECCCSEEHHHHSTT--------CTHHHHHHHHHHH-HHHH---TTEECTTCCTTSEEESS-SEEECCCTTCEE
T ss_pred             ECCCCCCHHHHHHH--------HHHHHHHHHHHHH-HHHH---CcCccCCCCHHHEEECC-eEEEEECccCEE
Confidence            99999999999975        6799999999999 9999   899999999999   55 999999999974

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.73  E-value=1.1e-17  Score=177.77  Aligned_cols=133  Identities=14%  Similarity=0.222  Sum_probs=111.3

Q ss_pred             hhhcccCCceEEEEEEEccCC-EEEEEEEeccCchhhHHHHHHHHHH--hcCCC------CcccEEEEEEcCCeeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG-TQVAVKMLSASSVQGYKQFQAEVQY--IVHHK------NLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g-~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~------NIv~l~g~~~~~~~~~LV~E  608 (678)
                      .+.||+|+||.||+|....++ +.||||+++... ...+.+.+|+..  .++|+      +++.+++++...+..+||||
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e  102 (355)
T 2eu9_A           24 VGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFE  102 (355)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEe
Confidence            478999999999999986555 799999997543 334566777666  24443      49999999999999999999


Q ss_pred             cCCCCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----C-------------------
Q 038969          609 FMAKGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----H-------------------  663 (678)
Q Consensus       609 y~~~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~-------------------  663 (678)
                      |+ +|+|.+++...  ..+++.+++.++.|+++||+ |||+   .+|+||||||+|    .                   
T Consensus       103 ~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~-~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~  177 (355)
T 2eu9_A          103 LL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALR-FLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVK  177 (355)
T ss_dssp             CC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEES
T ss_pred             cc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHH---CCcccCCCCHHHEEEecccccccccccccccccccC
Confidence            99 66777777643  47999999999999999999 9999   899999999999    1                   


Q ss_pred             CCcEEEEeeCCcc
Q 038969          664 KNIVKLITFSIIK  676 (678)
Q Consensus       664 ~~~vkI~DFGlar  676 (678)
                      .+.+||+|||+|+
T Consensus       178 ~~~~kl~Dfg~~~  190 (355)
T 2eu9_A          178 NTSIRVADFGSAT  190 (355)
T ss_dssp             CCCEEECCCTTCE
T ss_pred             CCcEEEeecCccc
Confidence            4679999999986

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.71  E-value=7.8e-18  Score=174.49  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=99.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch------------------hhHHHHHHHHHHh--cCCCCcccEEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV------------------QGYKQFQAEVQYI--VHHKNLTTLVGYC  597 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~------------------~~~~~f~~Ev~~~--l~H~NIv~l~g~~  597 (678)
                      .+.||+|+||.||+|.. .+|+.||||.++....                  .....+.+|+..+  ++  | +++.+++
T Consensus        95 ~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~  170 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVY  170 (282)
T ss_dssp             EEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEE
T ss_pred             cCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEE
Confidence            37899999999999999 5899999999965321                  1345688888874  65  4 5555554


Q ss_pred             EcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCC
Q 038969          598 DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSI  674 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGl  674 (678)
                      .. +..++||||+++|+|.+ +..      .+...++.|+++||+ |||+   .+|+||||||+|   .++.+||+|||+
T Consensus       171 ~~-~~~~lvmE~~~g~~L~~-l~~------~~~~~i~~qi~~~l~-~lH~---~giiHrDlkp~NILl~~~~vkl~DFG~  238 (282)
T 1zar_A          171 AW-EGNAVLMELIDAKELYR-VRV------ENPDEVLDMILEEVA-KFYH---RGIVHGDLSQYNVLVSEEGIWIIDFPQ  238 (282)
T ss_dssp             EE-ETTEEEEECCCCEEGGG-CCC------SCHHHHHHHHHHHHH-HHHH---TTEECSCCSTTSEEEETTEEEECCCTT
T ss_pred             ec-cceEEEEEecCCCcHHH-cch------hhHHHHHHHHHHHHH-HHHH---CCCEeCCCCHHHEEEECCcEEEEECCC
Confidence            43 55699999999999998 532      234579999999999 9999   899999999999   788999999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      |+.
T Consensus       239 a~~  241 (282)
T 1zar_A          239 SVE  241 (282)
T ss_dssp             CEE
T ss_pred             CeE
Confidence            873

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.67  E-value=5.8e-17  Score=177.17  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=101.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---hhHHHHHHHHHH--hcCC-CCc---------c-----------
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQY--IVHH-KNL---------T-----------  591 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---~~~~~f~~Ev~~--~l~H-~NI---------v-----------  591 (678)
                      .++||+|+||.||+|....+|+.||||++.....   ...+.|.+|+..  .++| +|.         +           
T Consensus        83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (413)
T 3dzo_A           83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  162 (413)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC-
T ss_pred             ecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCC
Confidence            3689999999999999887899999999984322   235678888877  3555 211         1           


Q ss_pred             -cEEEEEEc-----CCeeEEEEecCCCCCHHHhhc------C-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCC
Q 038969          592 -TLVGYCDE-----DTNMGLIYEFMAKGNLEEHLS------G-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSS  658 (678)
Q Consensus       592 -~l~g~~~~-----~~~~~LV~Ey~~~GsL~~~L~------~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDl  658 (678)
                       .++.+...     ....+++|+++ +|+|.+++.      . ...+++..++.|+.|+++||+ |||+   .+||||||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~-~LH~---~~iiHrDi  237 (413)
T 3dzo_A          163 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLA-SLHH---YGLVHTYL  237 (413)
T ss_dssp             --------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHH-HHHH---TTEECSCC
T ss_pred             CccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCCc
Confidence             11111111     22456777765 689999984      1 245889999999999999999 9999   89999999


Q ss_pred             CCCC----CCCcEEEEeeCCccc
Q 038969          659 SSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       659 k~~N----~~~~vkI~DFGlar~  677 (678)
                      ||+|    .++.+||+|||+|+.
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~  260 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVR  260 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEE
T ss_pred             ccceEEEecCCeEEEEeccceee
Confidence            9999    778899999999873

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.62  E-value=3.9e-16  Score=159.53  Aligned_cols=128  Identities=16%  Similarity=0.166  Sum_probs=96.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEE--EEEEEeccCchh------------------------hHHHHHHHHHHh--cCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQ--VAVKMLSASSVQ------------------------GYKQFQAEVQYI--VHHKN  589 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~--VAVK~l~~~~~~------------------------~~~~f~~Ev~~~--l~H~N  589 (678)
                      .+.||+|+||.||+|....+|+.  ||||+++.....                        ....+.+|+..+  ++|++
T Consensus        52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~  131 (258)
T 1zth_A           52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAG  131 (258)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCC
Confidence            46899999999999998558999  999987543111                        113567777763  66664


Q ss_pred             --cccEEEEEEcCCeeEEEEecCCC-C----CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHh-cCCCCCccccCCCCC
Q 038969          590 --LTTLVGYCDEDTNMGLIYEFMAK-G----NLEEHLSGANTLTWEARLRIATEAAQGSHSAFD-QGCCPHICESSSSSN  661 (678)
Q Consensus       590 --Iv~l~g~~~~~~~~~LV~Ey~~~-G----sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH-~~~~~~iiHrDlk~~  661 (678)
                        +..++.+    ...+|||||+.+ |    +|.++...   .++.++..++.|+++||. ||| +   .+|+||||||.
T Consensus       132 i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~---~~~~~~~~i~~qi~~~l~-~lH~~---~givHrDlkp~  200 (258)
T 1zth_A          132 VSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE---LKELDVEGIFNDVVENVK-RLYQE---AELVHADLSEY  200 (258)
T ss_dssp             CCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG---GGGSCHHHHHHHHHHHHH-HHHHT---SCEECSSCSTT
T ss_pred             CCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc---cChHHHHHHHHHHHHHHH-HHHHH---CCEEeCCCCHH
Confidence              3444443    356899999942 4    77776542   345677899999999999 999 7   89999999999


Q ss_pred             C---CCCcEEEEeeCCccc
Q 038969          662 P---HKNIVKLITFSIIKN  677 (678)
Q Consensus       662 N---~~~~vkI~DFGlar~  677 (678)
                      |   .. .+||+|||+|+.
T Consensus       201 NILl~~-~~~liDFG~a~~  218 (258)
T 1zth_A          201 NIMYID-KVYFIDMGQAVT  218 (258)
T ss_dssp             SEEESS-SEEECCCTTCEE
T ss_pred             HEEEcC-cEEEEECccccc
Confidence            9   55 999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.40  E-value=1.7e-13  Score=143.80  Aligned_cols=124  Identities=30%  Similarity=0.469  Sum_probs=103.2

Q ss_pred             CCchhhHHHHHHHHHhhCC---CCCCCC--CCCCCcccccccccCCCCCCCCCeEEEeeCCCCCCcc--ccchhhhcCcC
Q 038969          333 LTSQQDVDAIMSIKKKYGV---KKNWQG--DPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISG--EIITYIFSLTS  405 (678)
Q Consensus       333 ~~~~~d~~al~~~k~~~~~---~~~w~g--~pc~p~~~~w~gv~C~~~~~~~~~l~~l~Ls~n~l~G--~ip~~~~~l~~  405 (678)
                      .+.++|..||+++|+.+..   ..+|..  +||.   +.|.||.|+... ...+|+.|+|++|+++|  .+|..|.++++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC-CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            3678899999999999853   457953  4553   349999997542 22589999999999999  89999999999


Q ss_pred             CCeeccCC-CcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccccc
Q 038969          406 LQALDLSN-NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS  460 (678)
Q Consensus       406 L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l~  460 (678)
                      |++|+|++ |+++|.+|..++++++|+.|+|++|+++|.+|..+..+..+..++++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  133 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence            99999994 99999999999999999999999999999999988887776655543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=1.7e-13  Score=162.13  Aligned_cols=125  Identities=18%  Similarity=0.249  Sum_probs=105.0

Q ss_pred             CCCCchhhHHHHHHHHHhhCCCCCCCCCC----CCCccccc------------ccccCCCCCCCCCeEEEeeCCCCCCcc
Q 038969          331 SSLTSQQDVDAIMSIKKKYGVKKNWQGDP----CAPKVYLW------------QGLNCSYDGNELPRIISLNLSSSGISG  394 (678)
Q Consensus       331 ~~~~~~~d~~al~~~k~~~~~~~~w~g~p----c~p~~~~w------------~gv~C~~~~~~~~~l~~l~Ls~n~l~G  394 (678)
                      ...+...|..||++||+.++.. +|+.+.    +.|..|.|            .||.|+..    .+|+.|+|++++|+|
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~----~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN----GRVTGLSLAGFGAKG  337 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----SCEEEEECTTTCCEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccccccccccccccCcCceEecCC----CCEEEEECccCCCCC
Confidence            3445678999999999998655 896443    33334789            99999863    599999999999999


Q ss_pred             ccchhhhcCcCCCeecc-CCCcCCCC------------------------------------------------------
Q 038969          395 EIITYIFSLTSLQALDL-SNNSLTGS------------------------------------------------------  419 (678)
Q Consensus       395 ~ip~~~~~l~~L~~L~L-s~N~l~G~------------------------------------------------------  419 (678)
                      .||++|++|++|+.||| ++|.|+|.                                                      
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            99999999999999999 88877666                                                      


Q ss_pred             ----------------------CChhhhhhhhhhhhhccCCCCCC-----------------CCcccch--hhhcccccc
Q 038969          420 ----------------------VPEFLSELHFLRVLNLTGNNLEG-----------------SVPAGLL--ERAKNGLLS  458 (678)
Q Consensus       420 ----------------------iP~~l~~l~~L~~L~ls~N~l~G-----------------~iP~~l~--~~~~~~~l~  458 (678)
                                            ||..+++|++|+.|+|++|+|+|                 .||..+.  .+..+..++
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  89999999999999999999999                 4999987  777766655


Q ss_pred             cc
Q 038969          459 LS  460 (678)
Q Consensus       459 l~  460 (678)
                      ++
T Consensus       498 Ls  499 (876)
T 4ecn_A          498 LY  499 (876)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.30  E-value=2.7e-13  Score=145.05  Aligned_cols=124  Identities=9%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch--------------hhHHHH--------HHHHHH--hcCCCCc--c
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--------------QGYKQF--------QAEVQY--IVHHKNL--T  591 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--------------~~~~~f--------~~Ev~~--~l~H~NI--v  591 (678)
                      ...||+|++|.||+|... +|+.||||+++....              ......        .+|...  .+++.++  .
T Consensus       100 ~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp  178 (397)
T 4gyi_A          100 GSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVP  178 (397)
T ss_dssp             EEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred             cCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            468999999999999986 899999998754210              001111        223322  2333332  2


Q ss_pred             cEEEEEEcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC--
Q 038969          592 TLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN--  665 (678)
Q Consensus       592 ~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~--  665 (678)
                      ..+.+  .  ..+|||||++++.|.++...      .....++.|++.+|. +||+   .+||||||||.|    +++  
T Consensus       179 ~p~~~--~--~~~LVME~i~G~~L~~l~~~------~~~~~l~~qll~~l~-~lH~---~gIVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          179 EPIAQ--S--RHTIVMSLVDALPMRQVSSV------PDPASLYADLIALIL-RLAK---HGLIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             CEEEE--E--TTEEEEECCSCEEGGGCCCC------SCHHHHHHHHHHHHH-HHHH---TTEECSCCSTTSEEEEEEECS
T ss_pred             eeeec--c--CceEEEEecCCccHhhhccc------HHHHHHHHHHHHHHH-HHHH---CCCcCCCCCHHHEEEeCCCCc
Confidence            22222  1  23799999999888765432      234578899999999 9999   889999999999    222  


Q ss_pred             --------cEEEEeeCCcc
Q 038969          666 --------IVKLITFSIIK  676 (678)
Q Consensus       666 --------~vkI~DFGlar  676 (678)
                              .+.|+||+-+-
T Consensus       245 ~d~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCE
T ss_pred             ccccccccceEEEEeCCcc
Confidence                    38999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.27  E-value=2e-12  Score=148.95  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=100.4

Q ss_pred             CCCchhhHHHHHHHHHhhCCC------------CCCCCCCCCCccccc---ccccCCCCCCCCCeEEEeeCCCCCCcccc
Q 038969          332 SLTSQQDVDAIMSIKKKYGVK------------KNWQGDPCAPKVYLW---QGLNCSYDGNELPRIISLNLSSSGISGEI  396 (678)
Q Consensus       332 ~~~~~~d~~al~~~k~~~~~~------------~~w~g~pc~p~~~~w---~gv~C~~~~~~~~~l~~l~Ls~n~l~G~i  396 (678)
                      ......|..||.+++..++..            .+|+.+   ...|.|   .||.|+..    .+|+.|+|++++++|.+
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~~----~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNSN----GRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGGTTCCTTEEECTT----CCEEEEECTTSCCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcccccCCCCeEEcCC----CCEEEEEecCcccCCcC
Confidence            334567999999999887532            146432   233679   99999864    49999999999999999


Q ss_pred             chhhhcCcCCCeeccCCC--------------------------------------------------------------
Q 038969          397 ITYIFSLTSLQALDLSNN--------------------------------------------------------------  414 (678)
Q Consensus       397 p~~~~~l~~L~~L~Ls~N--------------------------------------------------------------  414 (678)
                      |++|++|++|++|||++|                                                              
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~  177 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK  177 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence            999999999999999998                                                              


Q ss_pred             ----------------cCCCCCChhhhhhhhhhhhhccCCCCCCC-----------------Ccccch--hhhccccccc
Q 038969          415 ----------------SLTGSVPEFLSELHFLRVLNLTGNNLEGS-----------------VPAGLL--ERAKNGLLSL  459 (678)
Q Consensus       415 ----------------~l~G~iP~~l~~l~~L~~L~ls~N~l~G~-----------------iP~~l~--~~~~~~~l~l  459 (678)
                                      +|+| ||+.+++|++|+.|+|++|+|+|+                 +|..+.  .+..+..+++
T Consensus       178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L  256 (636)
T 4eco_A          178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV  256 (636)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence                            4556 999999999999999999999997                 999988  8887766655


Q ss_pred             c
Q 038969          460 S  460 (678)
Q Consensus       460 ~  460 (678)
                      +
T Consensus       257 ~  257 (636)
T 4eco_A          257 Y  257 (636)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.19  E-value=9.7e-12  Score=146.46  Aligned_cols=97  Identities=28%  Similarity=0.450  Sum_probs=70.6

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc-
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL-  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l-  457 (678)
                      .+.++.|+|++|+++|.||.+|++|+.|+.|+||+|+|+|.||+.+++|++|+.|||++|+|+|.||..+..+..+..+ 
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            4567777777777777777777777777777777777777777777777777777777777777777776655544322 


Q ss_pred             --------------------cccccCCCCCcccc--cccc
Q 038969          458 --------------------SLSVDGNPKLCHTA--SCNK  475 (678)
Q Consensus       458 --------------------~l~~~~n~~lC~~~--~c~~  475 (678)
                                          ..+|.||+++|+.+  .|..
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~  750 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP  750 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence                                23577999999865  6754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.16  E-value=1.2e-11  Score=145.60  Aligned_cols=118  Identities=25%  Similarity=0.372  Sum_probs=94.5

Q ss_pred             CCchhhHHHHHHHHHhhC---CCCCCCC-CCCCCcccccccccCCCCCCCCCeEEEeeCCCCCCccc---cch-------
Q 038969          333 LTSQQDVDAIMSIKKKYG---VKKNWQG-DPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGE---IIT-------  398 (678)
Q Consensus       333 ~~~~~d~~al~~~k~~~~---~~~~w~g-~pc~p~~~~w~gv~C~~~~~~~~~l~~l~Ls~n~l~G~---ip~-------  398 (678)
                      ...++|..||+++|+.+.   ...+|+. ..|    |.|.||.|+ .    .+|+.|+|+++++.|.   +|+       
T Consensus         8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~-~----~~v~~L~L~~~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR-D----DKVTSIDLSSKPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE-T----TEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred             cCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC-C----CcEEEEECCCCCcCCccCccChhHhccCc
Confidence            346789999999999875   3568963 323    579999997 2    4999999999999997   654       


Q ss_pred             ----------------hhhcCcCCCeeccCCCcCCCCCCh--hhhhhhhhhhhhccCCCCCCCCcccc-hhhhccccccc
Q 038969          399 ----------------YIFSLTSLQALDLSNNSLTGSVPE--FLSELHFLRVLNLTGNNLEGSVPAGL-LERAKNGLLSL  459 (678)
Q Consensus       399 ----------------~~~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~ls~N~l~G~iP~~l-~~~~~~~~l~l  459 (678)
                                      .|++|++|++|||++|.++|.+|.  .+++|++|++|+|++|.++|.+|..+ ..+..+..+++
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence                            677788999999999999999998  89999999999999999999998765 44444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=3.2e-10  Score=107.76  Aligned_cols=103  Identities=23%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      |+|..+.|+...      .-++.++.|+|++|++++..|..|.+|++|+.|+|++|+|++..|..+..+++|+.|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            679999998643      12467899999999999998999999999999999999999877778899999999999999


Q ss_pred             CCCCCCcccchhhhccccccccccCCCCCcc
Q 038969          439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCH  469 (678)
Q Consensus       439 ~l~G~iP~~l~~~~~~~~l~l~~~~n~~lC~  469 (678)
                      +|++..|..+..+.++..  +.+.+|+-.|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~--L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTH--IWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCE--EECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCE--EEeCCCCCCCC
Confidence            999766666777766554  45668887664

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.00  E-value=2.1e-09  Score=102.63  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             eEeecCCCCCCCCccCCCCeeeecCCCcccCCceeeeCC----CccCccccccccceeeecCCCCCceeeecCCCCCcce
Q 038969            2 ISIDCGIPHDSSYTDKITGINYVSDSTFIDTGVINNISS----EYSSNKTLERQFLNVRSFPEGIRNCYTLKPSSGDVKF   77 (678)
Q Consensus         2 isidCG~~~~~~y~d~~t~i~~~~D~~fi~~G~~~~i~~----~~~~~~~~~~~~~tlR~Fp~g~rnCY~l~~~~g~~~Y   77 (678)
                      ..|+||.+   ..+|. .+.+|.+|..|...|.......    ..... .....|+|.|.||.  .-+|.+|+.+++ +|
T Consensus         8 ~~INcGg~---~~~d~-~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~-~~~~lY~TaR~~~~--~~tY~f~v~~~G-~Y   79 (174)
T 2jwp_A            8 WAVNAGGE---SHVDV-HGIHYRKDPLEGRVGRASDYGMKLPILRSNP-EDQVLYQTERYNED--SFGYDIPIKEEG-EY   79 (174)
T ss_dssp             EEEEETSS---SEEET-TTEEECSSCSSTTCCCCCCCCTTSCCSSSCH-HHHHTTTCCCCCCS--CEEEEEECCSCE-EE
T ss_pred             EEEECCCC---CccCC-CCCEEcCCcCcccCCcccccccceEecccCC-CCchhhhhhccCCC--CeEEEEEeCCCe-EE
Confidence            47999975   34664 6899999988864443221111    10111 23457899999995  689999998766 99


Q ss_pred             EEEEEeecccCCCCCCCceEEEEecCcEE-EEEEecC---CCccEEEEEEEe-------------ccCCceeEEEEecCC
Q 038969           78 LIRARFMYGNYDGQNIIPSFSLLLEADVW-DSVNLKD---ASGIVTKEIIHA-------------PKKNYMYVCLVNTGS  140 (678)
Q Consensus        78 liR~~F~ygnyd~~~~~p~Fdl~~g~~~w-~~v~~~~---~~~~~~~e~i~~-------------~~~~~~~vClv~~~~  140 (678)
                      +||..|.--.|... ....||+++++..- ...++..   ...+++++..+.             ..+..+.|.|.....
T Consensus        80 ~VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~  158 (174)
T 2jwp_A           80 VLVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYY  158 (174)
T ss_dssp             EEEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSS
T ss_pred             EEEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCC
Confidence            99999976666653 44689999988552 3334321   233566666543             245568888875335


Q ss_pred             CCceeeeeeeeec
Q 038969          141 GTPFISALELRPL  153 (678)
Q Consensus       141 g~PfIS~lElr~l  153 (678)
                      +.|||++||+.+-
T Consensus       159 ~~a~inaIEI~~~  171 (174)
T 2jwp_A          159 DNPKVCALFIMKG  171 (174)
T ss_dssp             CSSSEEEEEEESS
T ss_pred             CCcEEEEEEEEeC
Confidence            6799999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.99  E-value=3e-11  Score=127.59  Aligned_cols=126  Identities=20%  Similarity=0.341  Sum_probs=99.6

Q ss_pred             CCCchhhHHHHHHHHHhhC-CCC----CCC-CCCCCCcccccccccCCCC-----CCCCCeEEEeeCCCCCCccccchhh
Q 038969          332 SLTSQQDVDAIMSIKKKYG-VKK----NWQ-GDPCAPKVYLWQGLNCSYD-----GNELPRIISLNLSSSGISGEIITYI  400 (678)
Q Consensus       332 ~~~~~~d~~al~~~k~~~~-~~~----~w~-g~pc~p~~~~w~gv~C~~~-----~~~~~~l~~l~Ls~n~l~G~ip~~~  400 (678)
                      .....+|..||+++|..+. ...    .|. ...|.+..|.|.|+.|...     ....++++.|+|++|+++ .+|..+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            3456688999999999773 233    452 1233555678999999531     012468999999999998 899999


Q ss_pred             hcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccccc
Q 038969          401 FSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS  460 (678)
Q Consensus       401 ~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l~  460 (678)
                      .+|++|++|+|++|+++ .+|..++++++|+.|+|++|+++ .+|..+..+.++..++++
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            99999999999999999 99999999999999999999999 899988888877666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.95  E-value=4e-10  Score=109.31  Aligned_cols=93  Identities=19%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccch-hhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIIT-YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~-~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      |.|..+.|+..+      .-...++.|+|++|++++..+. .+..+++|+.|+|++|++++.+|..+..+++|+.|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            678888887542      1123566777777777655543 366777777777777777766677777777777777777


Q ss_pred             CCCCCCCcccchhhhccccc
Q 038969          438 NNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       438 N~l~G~iP~~l~~~~~~~~l  457 (678)
                      |++++..|..+..+.++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEE
T ss_pred             CcCCccCHHHhcCCCCCCEE
Confidence            77776666555555544433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.92  E-value=7.8e-10  Score=117.20  Aligned_cols=102  Identities=22%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             cccccccCCCC-C-------CCCCeEEEeeCCC-CCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhc
Q 038969          365 YLWQGLNCSYD-G-------NELPRIISLNLSS-SGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNL  435 (678)
Q Consensus       365 ~~w~gv~C~~~-~-------~~~~~l~~l~Ls~-n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~l  435 (678)
                      |.|..|.|+.. +       ....+|+.|+|++ |.|++..|..|.+|++|+.|+|++|+|+|..|..|+.|++|+.|+|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            67999999875 1       2345689999997 9999888889999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcccchhhhccccccccccCCCCCcc
Q 038969          436 TGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH  469 (678)
Q Consensus       436 s~N~l~G~iP~~l~~~~~~~~l~l~~~~n~~lC~  469 (678)
                      ++|+|++ +|..++....+.  .|.+.+|+-.|.
T Consensus        88 ~~N~l~~-~~~~~~~~~~L~--~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALES-LSWKTVQGLSLQ--ELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSC-CCSTTTCSCCCC--EEECCSSCCCCC
T ss_pred             CCCccce-eCHHHcccCCce--EEEeeCCCccCC
Confidence            9999996 555444333233  345567776553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.88  E-value=2.3e-09  Score=102.33  Aligned_cols=103  Identities=20%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      |...-+.|+...      .-++.++.|+|++|++++.+|..|.+|++|+.|+|++|+|++..|..+..+++|+.|+|++|
T Consensus        12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            445567787542      12467899999999999999999999999999999999999866667799999999999999


Q ss_pred             CCCCCCcccchhhhccccccccccCCCCCcc
Q 038969          439 NLEGSVPAGLLERAKNGLLSLSVDGNPKLCH  469 (678)
Q Consensus       439 ~l~G~iP~~l~~~~~~~~l~l~~~~n~~lC~  469 (678)
                      +|++..|..+..+.++..  +.+.+|+-.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~--L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTH--IYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSE--EECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCE--EEeCCCCcccc
Confidence            999655555776666554  45668876664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.85  E-value=2.7e-09  Score=103.60  Aligned_cols=101  Identities=24%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             CCCCCc-ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhh
Q 038969          358 DPCAPK-VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFL  430 (678)
Q Consensus       358 ~pc~p~-~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  430 (678)
                      .+|... .|.|..+.|+..+      .-++.++.|+|++|+++ .+|..|.++++|+.|+|++|++++..|..|..|++|
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            456432 4678889998643      12457889999999998 788889999999999999999998888888999999


Q ss_pred             hhhhccCCCCCCCCcccchhhhccccccc
Q 038969          431 RVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       431 ~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +.|+|++|++++..|..+..+.++..+++
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            99999999999877777777766555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.82  E-value=3.3e-09  Score=105.80  Aligned_cols=95  Identities=21%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      |+|.+|.|+...      +.++.++.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            579999998643      12467899999999999988888999999999999999997666667788999999999999


Q ss_pred             CCCCCCcccchhhhccccccc
Q 038969          439 NLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       439 ~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +|++..|..+..+.++..+.+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCccChhHhCcchhhCeEec
Confidence            999766655666666554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.79  E-value=5.2e-09  Score=99.69  Aligned_cols=96  Identities=21%  Similarity=0.183  Sum_probs=77.8

Q ss_pred             ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          364 VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       364 ~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      .|.|.++.|+..+      ..++.++.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3789999998643      1246889999999999976666789999999999999999977777789999999999999


Q ss_pred             CCCCCCCcccchhhhccccccc
Q 038969          438 NNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       438 N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      |++++..|..+..+.++..+++
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCccccCHHHhhCCcccCEEEC
Confidence            9999766666666666555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.77  E-value=2.1e-09  Score=112.49  Aligned_cols=90  Identities=27%  Similarity=0.395  Sum_probs=79.0

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++.+|. +..+++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|.. ..+..+.  
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~--  294 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD--  294 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSC--
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccC--
Confidence            357899999999999988776 889999999999999999999999999999999999999999999986 5555544  


Q ss_pred             cccccCCCCCcccc
Q 038969          458 SLSVDGNPKLCHTA  471 (678)
Q Consensus       458 ~l~~~~n~~lC~~~  471 (678)
                      .+.+.+|+.+|+.+
T Consensus       295 ~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          295 VSAYANNKCLCGSP  308 (313)
T ss_dssp             GGGTCSSSEEESTT
T ss_pred             hHHhcCCCCccCCC
Confidence            45677999999864

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.75  E-value=1.9e-08  Score=102.04  Aligned_cols=131  Identities=10%  Similarity=-0.008  Sum_probs=97.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      ...++.|+.+.||+...  .++.+++|+...........+.+|+..+  + +|..+.++++++...+..++||||++|.+
T Consensus        19 ~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~   96 (263)
T 3tm0_A           19 VKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVL   96 (263)
T ss_dssp             EECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEE
T ss_pred             EeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCee
Confidence            35677777889999874  4689999998753212223566676662  4 46788899999998889999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcC----------------------------------------------
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG----------------------------------------------  648 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~----------------------------------------------  648 (678)
                      |.+.+..     ..+...++.+++++|+ .||+-                                              
T Consensus        97 l~~~~~~-----~~~~~~~~~~l~~~l~-~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (263)
T 3tm0_A           97 CSEEYED-----EQSPEKIIELYAECIR-LFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPREL  170 (263)
T ss_dssp             HHHHCCT-----TTCHHHHHHHHHHHHH-HHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHH
T ss_pred             hhhccCC-----cccHHHHHHHHHHHHH-HHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHH
Confidence            9886421     2234578899999999 99981                                              


Q ss_pred             ----------CCCCccccCCCCCC---CCC-cEEEEeeCCcc
Q 038969          649 ----------CCPHICESSSSSNP---HKN-IVKLITFSIIK  676 (678)
Q Consensus       649 ----------~~~~iiHrDlk~~N---~~~-~vkI~DFGlar  676 (678)
                                ..+.++|+|+++.|   +++ .+.|+||+.|.
T Consensus       171 ~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          171 YDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                      01458999999999   444 45699999764

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=98.72  E-value=1.5e-08  Score=96.64  Aligned_cols=144  Identities=14%  Similarity=0.074  Sum_probs=86.7

Q ss_pred             EEecCCCCCCCcCCCCCCCcccccCCCCCC-ceeeee-ccccccCCCCCCCcHHHHhhccccCCCCccceEEEeeCCCCC
Q 038969          167 LWDVGSTTSEAIRYPDDVYDRIWSPYRSLR-WESITR-RSDSTFFENDWQLPLTIMRTAVRPANASINSLSFYWKTSTPE  244 (678)
Q Consensus       167 l~~~g~~~~~~~rypdD~~DR~W~~~~~~~-~~~ist-~~~i~~~~~~~~~P~~v~~tA~~~~~~~~~~l~~~~~~~~~~  244 (678)
                      .+|||+..   +.   |..+|.|.++.... ....+. ...+.. ......|..|.|||-...    ..+++.... +++
T Consensus         9 ~INcGg~~---~~---d~~gr~w~~D~~~~~~g~~~~~~~~~~~-~~~~~~~~~lY~TaR~~~----~~~tY~f~v-~~~   76 (174)
T 2jwp_A            9 AVNAGGES---HV---DVHGIHYRKDPLEGRVGRASDYGMKLPI-LRSNPEDQVLYQTERYNE----DSFGYDIPI-KEE   76 (174)
T ss_dssp             EEEETSSS---EE---ETTTEEECSSCSSTTCCCCCCCCTTSCC-SSSCHHHHHTTTCCCCCC----SCEEEEEEC-CSC
T ss_pred             EEECCCCC---cc---CCCCCEEcCCcCcccCCcccccccceEe-cccCCCCchhhhhhccCC----CCeEEEEEe-CCC
Confidence            38999753   21   67899998874311 000000 011111 122446889999996633    235555553 456


Q ss_pred             CceEEEEEeeeccCCCCCceeEEEEEECCeeecCCcCcccccee--ee---Eee------------eecCCCceeEEEEe
Q 038969          245 SQYYIFLHFAEVEGRQENQTREMSIYSNGKLWYGPFVPYTFFTT--TL---VSI------------YPSKGSERIDFSIN  307 (678)
Q Consensus       245 ~~~~~~lhFaei~~~~~~~~R~F~I~lng~~~~~~~~p~~~~~~--~~---~~~------------~~~~~~~~~~lsl~  307 (678)
                      ..|+|-|||+|+.- .....|+|||++||+.....|.+......  .+   +..            +.. ..+.++|++.
T Consensus        77 G~Y~VrLhF~ei~~-~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~-~~g~L~I~f~  154 (174)
T 2jwp_A           77 GEYVLVLKFAEVYF-AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVST-FTGKLSVEFV  154 (174)
T ss_dssp             EEEEEEEEEECCSC-CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEE-CCSEEEEEEE
T ss_pred             eEEEEEEEEecccc-CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecc-cCCeEEEEEe
Confidence            79999999999974 34678999999999866433433211100  00   100            112 4578999998


Q ss_pred             ecCCCCCCcccchHHHHhh
Q 038969          308 KTENSTLPPILNAEEIYLA  326 (678)
Q Consensus       308 ~~~~s~lpp~lna~e~~~~  326 (678)
                      +.  ..-.|+|||+|++..
T Consensus       155 p~--~~~~a~inaIEI~~~  171 (174)
T 2jwp_A          155 KG--YYDNPKVCALFIMKG  171 (174)
T ss_dssp             CS--SSCSSSEEEEEEESS
T ss_pred             cc--CCCCcEEEEEEEEeC
Confidence            63  345799999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.71  E-value=8.8e-09  Score=102.04  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++..|..|..|++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+.++.. 
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-  157 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST-  157 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE-
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE-
Confidence            3568999999999999888888999999999999999999999999999999999999999999988988887776554 


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                       +.+.+|+-.|.
T Consensus       158 -L~L~~N~l~c~  168 (220)
T 2v70_A          158 -LNLLANPFNCN  168 (220)
T ss_dssp             -EECCSCCEECS
T ss_pred             -EEecCcCCcCC
Confidence             45668876663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.70  E-value=1.4e-08  Score=99.22  Aligned_cols=95  Identities=22%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      |.|.++.|+..+      ..+++++.|+|++|++++..+..+.++++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            789999998653      12457999999999999766667899999999999999999777777889999999999999


Q ss_pred             CCCCCCcccchhhhccccccc
Q 038969          439 NLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       439 ~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++++..|..+..+..+..+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCccCHhHhcCccCCCEEEc
Confidence            999766655666666655544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.68  E-value=1.4e-08  Score=100.52  Aligned_cols=93  Identities=18%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccch-hhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIIT-YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~-~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      |.|..+.|+...      .-+..++.|+|++|++++..|. .|..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            678888887642      0123455677777777665443 356666666666666666666666666666666666666


Q ss_pred             CCCCCCCcccchhhhccccc
Q 038969          438 NNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       438 N~l~G~iP~~l~~~~~~~~l  457 (678)
                      |++++..|..+..+..+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEE
Confidence            66666555555555444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.65  E-value=1.9e-08  Score=99.57  Aligned_cols=99  Identities=23%  Similarity=0.266  Sum_probs=71.2

Q ss_pred             CCCC-cccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhh
Q 038969          359 PCAP-KVYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLR  431 (678)
Q Consensus       359 pc~p-~~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~  431 (678)
                      +|.. ..|.|..+.|+..+      .-++.++.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+
T Consensus         4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            4532 33789999998643      1134678888888888876666788888888888888888888888888888888


Q ss_pred             hhhccCCCCCCCCccc-chhhhcccccc
Q 038969          432 VLNLTGNNLEGSVPAG-LLERAKNGLLS  458 (678)
Q Consensus       432 ~L~ls~N~l~G~iP~~-l~~~~~~~~l~  458 (678)
                      .|+|++|+|++ +|.. +..+..+..+.
T Consensus        84 ~L~Ls~N~l~~-l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           84 SLVLYGNKITE-LPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCc-cCHhHccCCCCCCEEE
Confidence            88888888884 4443 44455544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.64  E-value=1.5e-08  Score=98.29  Aligned_cols=89  Identities=26%  Similarity=0.331  Sum_probs=75.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++..+..|.+|++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+.++.  .
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~  130 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS--H  130 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC--E
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc--E
Confidence            46899999999999988888899999999999999999999999999999999999999999965444566666554  3


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+-.|.
T Consensus       131 L~L~~N~~~C~  141 (193)
T 2wfh_A          131 LAIGANPLYCD  141 (193)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCeecC
Confidence            45678887774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.58  E-value=2.7e-08  Score=104.74  Aligned_cols=80  Identities=20%  Similarity=0.189  Sum_probs=66.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++.|.+|..++.+++|+.|+|++|++.|.+|..++.+++|+.|+|++|++.|.+|..+..+.++..+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            46788888888888888888888888888888888888888888888888888888888888888888888777655443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.58  E-value=3.2e-08  Score=112.82  Aligned_cols=90  Identities=27%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh-cccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA-KNGL  456 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~-~~~~  456 (678)
                      .+++++.|+|++|+|++.+|..|.+|++|+.|+|++|+|++..|..+..|++|+.|+|++|+|++..|..+..+. ++. 
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~-  570 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-  570 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC-
T ss_pred             hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC-
Confidence            357899999999999999999999999999999999999999999999999999999999999999998887663 333 


Q ss_pred             ccccccCCCCCcc
Q 038969          457 LSLSVDGNPKLCH  469 (678)
Q Consensus       457 l~l~~~~n~~lC~  469 (678)
                       .+.+.+||..|.
T Consensus       571 -~L~L~~Np~~C~  582 (635)
T 4g8a_A          571 -FLNLTQNDFACT  582 (635)
T ss_dssp             -EEECTTCCBCCS
T ss_pred             -EEEeeCCCCccc
Confidence             456779999884

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.55  E-value=1.2e-07  Score=95.41  Aligned_cols=124  Identities=10%  Similarity=-0.007  Sum_probs=86.8

Q ss_pred             hcc-cCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCC--cccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIG-KGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKN--LTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG-~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~N--Iv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .++ .|..+.||+.... +|+.+++|......   ...+..|+..  .+++.+  +.+++++....+..++||||+++.+
T Consensus        26 ~~~~gg~~~~v~~~~~~-~g~~~vlK~~~~~~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~  101 (264)
T 1nd4_A           26 QQTIGCSDAAVFRLSAQ-GRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD  101 (264)
T ss_dssp             ECSCTTSSCEEEEEECT-TSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             ecccCCCCceEEEEecC-CCCeEEEEeCCccc---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcc
Confidence            344 5556999999754 67889999976542   2345556555  243334  5678998888788999999999988


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC---------------------------------------------
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC---------------------------------------------  649 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~---------------------------------------------  649 (678)
                      |.  ...   .+   ...++.++++.|. .||+..                                             
T Consensus       102 l~--~~~---~~---~~~~~~~l~~~l~-~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (264)
T 1nd4_A          102 LL--SSH---LA---PAEKVSIMADAMR-RLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFA  172 (264)
T ss_dssp             TT--TSC---CC---HHHHHHHHHHHHH-HHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHH
T ss_pred             cC--cCc---CC---HhHHHHHHHHHHH-HHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHH
Confidence            84  221   22   2367788888888 888621                                             


Q ss_pred             ----------CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          650 ----------CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       650 ----------~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                                .+.++|+|++|.|    ++..++|+|||.|.
T Consensus       173 ~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          173 RLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             HHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                      1128999999999    44445699999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.55  E-value=4.6e-08  Score=96.85  Aligned_cols=89  Identities=25%  Similarity=0.254  Sum_probs=70.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+..+..  
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--  156 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT--  156 (220)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE--
Confidence            568889999999998544445788999999999999999888888999999999999999999777766766665443  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+-.|.
T Consensus       157 L~L~~N~~~c~  167 (220)
T 2v9t_B          157 MHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCcCCC
Confidence            45668877663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.53  E-value=6.6e-08  Score=96.24  Aligned_cols=89  Identities=22%  Similarity=0.240  Sum_probs=73.4

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+.++.. 
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-  163 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH-  163 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE-
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE-
Confidence            3578999999999999776667899999999999999999 89999999999999999999999766556666665543 


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                       +.+.+|+-.|.
T Consensus       164 -L~l~~N~~~c~  174 (229)
T 3e6j_A          164 -AYLFGNPWDCE  174 (229)
T ss_dssp             -EECTTSCBCTT
T ss_pred             -EEeeCCCccCC
Confidence             45668887664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.53  E-value=6.8e-08  Score=91.84  Aligned_cols=88  Identities=24%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+..+..  
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--  128 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK--  128 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE--
Confidence            468899999999999766666899999999999999999888888899999999999999999644444455555443  


Q ss_pred             ccccCCCCCc
Q 038969          459 LSVDGNPKLC  468 (678)
Q Consensus       459 l~~~~n~~lC  468 (678)
                      +.+.+|+-.|
T Consensus       129 L~l~~N~~~~  138 (177)
T 2o6r_A          129 IWLHTNPWDC  138 (177)
T ss_dssp             EECCSSCBCC
T ss_pred             EEecCCCeec
Confidence            4556777655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.50  E-value=4.6e-08  Score=107.23  Aligned_cols=101  Identities=21%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             CCCCCccccccc--ccCCCCC-----CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCC-Chhhhhhhh
Q 038969          358 DPCAPKVYLWQG--LNCSYDG-----NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSV-PEFLSELHF  429 (678)
Q Consensus       358 ~pc~p~~~~w~g--v~C~~~~-----~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~  429 (678)
                      +||. ..|.|.+  +.|+..+     .-+++++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..+..+++
T Consensus         2 ~p~~-~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~   80 (455)
T 3v47_A            2 DPGT-SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS   80 (455)
T ss_dssp             ------CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred             CCcc-ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccccc
Confidence            5665 3456666  8887643     12356788888888888877778888888888888888887776 456777888


Q ss_pred             hhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          430 LRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       430 L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      |+.|+|++|++++.+|..+..+.++..+++
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            888888888887777777766665554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.47  E-value=6.8e-08  Score=93.38  Aligned_cols=90  Identities=23%  Similarity=0.373  Sum_probs=80.3

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|++++.+|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..+..+.++.. 
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-  130 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-  130 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE-
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE-
Confidence            3678999999999999999999999999999999999999999999999999999999999999999998887776654 


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                       +.+.+|+-.|.
T Consensus       131 -L~L~~N~l~c~  141 (192)
T 1w8a_A          131 -LNLASNPFNCN  141 (192)
T ss_dssp             -EECTTCCBCCS
T ss_pred             -EEeCCCCccCc
Confidence             45668876653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.46  E-value=1.2e-07  Score=95.55  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=73.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|+.|+|++|+|++..|..+..+.++..  
T Consensus       106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--  183 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT--  183 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE--
Confidence            568899999999999766666889999999999999999877778999999999999999999777767766665544  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+-.|.
T Consensus       184 L~l~~N~~~c~  194 (251)
T 3m19_A          184 ITLFGNQFDCS  194 (251)
T ss_dssp             EECCSCCBCTT
T ss_pred             EEeeCCceeCC
Confidence            45668876663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.44  E-value=5e-08  Score=89.93  Aligned_cols=63  Identities=27%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC-CCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|.+++.+|..+..+++|+.|+|++|++++ +.|..++.+++|+.|+|++|++++
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            344455555555554444444445555555555555544 233444455555555555555544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.44  E-value=3.6e-07  Score=97.22  Aligned_cols=133  Identities=11%  Similarity=0.148  Sum_probs=95.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEec--cCc-hhhHHHHHHHHHHh--cC--CCCcccEEEEEEcC---CeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLS--ASS-VQGYKQFQAEVQYI--VH--HKNLTTLVGYCDED---TNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~--~~~-~~~~~~f~~Ev~~~--l~--H~NIv~l~g~~~~~---~~~~LV~E  608 (678)
                      +.++.|.++.||+...  .+..+++|+..  ... ......+.+|+..+  ++  +..+.++++++.+.   +..++|||
T Consensus        44 ~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4688999999999876  45678888876  332 12234566676662  44  45688999998766   45899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC---------------------------------------
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC---------------------------------------  649 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~---------------------------------------  649 (678)
                      |+++..+.+...  ..++..++..++.++++.|+ .||.-.                                       
T Consensus       122 ~v~G~~l~~~~~--~~l~~~~~~~~~~~l~~~La-~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (359)
T 3dxp_A          122 FVSGRVLWDQSL--PGMSPAERTAIYDEMNRVIA-AMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMD  198 (359)
T ss_dssp             CCCCBCCCCTTC--TTCCHHHHHHHHHHHHHHHH-HHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             ecCCeecCCCcc--ccCCHHHHHHHHHHHHHHHH-HHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHH
Confidence            999987754222  34788999999999999999 999720                                       


Q ss_pred             ----------------CCCccccCCCCCC----CCC--cEEEEeeCCcc
Q 038969          650 ----------------CPHICESSSSSNP----HKN--IVKLITFSIIK  676 (678)
Q Consensus       650 ----------------~~~iiHrDlk~~N----~~~--~vkI~DFGlar  676 (678)
                                      .+.++|||+++.|    +++  .+.|+||+.|.
T Consensus       199 ~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~  247 (359)
T 3dxp_A          199 SLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELST  247 (359)
T ss_dssp             HHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCE
T ss_pred             HHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccc
Confidence                            2568999999999    332  36999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.43  E-value=1.9e-07  Score=94.11  Aligned_cols=81  Identities=23%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++.++.|+|++|++++..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+..+..++
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            45788999999999988888899999999999999999988888888999999999999999976666666666655544


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       114 L  114 (251)
T 3m19_A          114 L  114 (251)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.43  E-value=1.8e-07  Score=91.26  Aligned_cols=88  Identities=24%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+.++..  
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--  152 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY--  152 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE--
Confidence            568899999999999766666889999999999999999877777889999999999999999765555666665543  


Q ss_pred             ccccCCCCCc
Q 038969          459 LSVDGNPKLC  468 (678)
Q Consensus       459 l~~~~n~~lC  468 (678)
                      +.+.+|+..|
T Consensus       153 L~l~~N~~~~  162 (208)
T 2o6s_A          153 IWLHDNPWDC  162 (208)
T ss_dssp             EECCSCCBCC
T ss_pred             EEecCCCeec
Confidence            4456776655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.42  E-value=7.4e-08  Score=108.29  Aligned_cols=94  Identities=20%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             cccccccCCCCCC--------CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhcc
Q 038969          365 YLWQGLNCSYDGN--------ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT  436 (678)
Q Consensus       365 ~~w~gv~C~~~~~--------~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls  436 (678)
                      |.|.|+ |+..+.        -.++++.|+|++|++++..|..|.++++|++|+|++|++++..|..++.+++|+.|+|+
T Consensus         4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            457776 643321        13467788888888877777777778888888888888877777777777777788888


Q ss_pred             CCCCCCCCcccchhhhccccccc
Q 038969          437 GNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       437 ~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +|++++..|..+..+.++..+++
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccCccCHHHhccCCCCcEEEC
Confidence            77777766665666655554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.42  E-value=1.8e-07  Score=95.44  Aligned_cols=89  Identities=25%  Similarity=0.239  Sum_probs=72.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..+..+..  
T Consensus       132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--  209 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY--  209 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE--
Confidence            568899999999999777777889999999999999999888888889999999999999999877766776666554  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+..|.
T Consensus       210 L~l~~N~~~~~  220 (272)
T 3rfs_A          210 IWLHDNPWDCT  220 (272)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEccCCCcccc
Confidence            44567776553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.40  E-value=9.3e-08  Score=88.06  Aligned_cols=77  Identities=23%  Similarity=0.306  Sum_probs=51.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC-CCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG-SVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G-~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|.+++.  ..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++ +.|..+..++++..+
T Consensus        41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            45677777777777765  566777777777777777777777777677777777777777776 234555555554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.40  E-value=1.4e-07  Score=106.82  Aligned_cols=83  Identities=28%  Similarity=0.339  Sum_probs=72.3

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCC-cccchhhhcccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV-PAGLLERAKNGL  456 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i-P~~l~~~~~~~~  456 (678)
                      .+++++.|+|++|+|+ .||..|++|++|+.|+|++|+|++ +| .++.|++|+.|+|++|+|++.+ |..+..+.++..
T Consensus       461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            3568999999999999 899999999999999999999997 78 8999999999999999999887 999988887665


Q ss_pred             ccccccCCC
Q 038969          457 LSLSVDGNP  465 (678)
Q Consensus       457 l~l~~~~n~  465 (678)
                      ++  +.+|+
T Consensus       538 L~--L~~N~  544 (567)
T 1dce_A          538 LN--LQGNS  544 (567)
T ss_dssp             EE--CTTSG
T ss_pred             EE--ecCCc
Confidence            54  44564

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.38  E-value=1.3e-07  Score=107.59  Aligned_cols=90  Identities=23%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             cccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          369 GLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       369 gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      -+.|+..+      +-++.++.|+|++|++++..|..|.+|++|++|||++|++++..|..|.+|++|++|+|++|+|++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence            36687543      123468888888888887666678888888888888888887777778888888888888888886


Q ss_pred             CCcccchhhhcccccc
Q 038969          443 SVPAGLLERAKNGLLS  458 (678)
Q Consensus       443 ~iP~~l~~~~~~~~l~  458 (678)
                      -.|..+..+.++..++
T Consensus       115 l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLV  130 (635)
T ss_dssp             ECGGGGTTCTTCCEEE
T ss_pred             CCHHHhcCCCCCCEEE
Confidence            5455555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.35  E-value=2.6e-07  Score=98.43  Aligned_cols=101  Identities=23%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             CCCCCCCCc-ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhh-cCcCCCeeccCCCcCCCCCChhhhh
Q 038969          355 WQGDPCAPK-VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSE  426 (678)
Q Consensus       355 w~g~pc~p~-~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~  426 (678)
                      .....|... .|.+..+.|+..+      .-++.++.|+|++|++++..+..+. ++++|+.|+|++|++++..|..|..
T Consensus         7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   86 (361)
T 2xot_A            7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP   86 (361)
T ss_dssp             CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence            334566432 2677888887642      1123456677777777665555555 6666666666666666666666666


Q ss_pred             hhhhhhhhccCCCCCCCCcccchhhhccc
Q 038969          427 LHFLRVLNLTGNNLEGSVPAGLLERAKNG  455 (678)
Q Consensus       427 l~~L~~L~ls~N~l~G~iP~~l~~~~~~~  455 (678)
                      +++|+.|+|++|+|++..|..+..+..+.
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            66666666666666654444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.34  E-value=1.8e-07  Score=109.19  Aligned_cols=68  Identities=24%  Similarity=0.251  Sum_probs=39.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccch
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLL  449 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  449 (678)
                      ++|+.|+|++|.|+ .||..|++|++|+.|+|++|.|+ .||..|+.|++|+.|+|++|.|+|.+|..+.
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            45555555555555 55555555555555555555554 5555555555555555555555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.32  E-value=1.4e-07  Score=88.84  Aligned_cols=61  Identities=30%  Similarity=0.412  Sum_probs=34.1

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|.+++.  ..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            4555555555555543  445555555555555555555555555555555555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.31  E-value=8.8e-08  Score=113.84  Aligned_cols=84  Identities=24%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|++++.+|..+..+++|+.|+|++|+|++..|..+.  ++|+.|+|++|+|+|.+|..+..+     .
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L-----~  550 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSL-----S  550 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSC-----C
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCc-----C
Confidence            468999999999999998888899999999999999999987777765  889999999999999999876532     2


Q ss_pred             cccccCCCCCc
Q 038969          458 SLSVDGNPKLC  468 (678)
Q Consensus       458 ~l~~~~n~~lC  468 (678)
                      .+.+.+||..|
T Consensus       551 ~l~l~~Np~~C  561 (844)
T 3j0a_A          551 VLDITHNKFIC  561 (844)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEecCCCccc
Confidence            35567788777

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.31  E-value=4.4e-07  Score=93.71  Aligned_cols=88  Identities=27%  Similarity=0.343  Sum_probs=73.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|+ .+|..+.....+.  .
T Consensus       123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~--~  199 (290)
T 1p9a_G          123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP--F  199 (290)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS--E
T ss_pred             CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC--e
Confidence            568999999999999776667889999999999999999666666788999999999999999 7898887766544  3


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+||..|.
T Consensus       200 l~L~~Np~~C~  210 (290)
T 1p9a_G          200 AFLHGNPWLCN  210 (290)
T ss_dssp             EECCSCCBCCS
T ss_pred             EEeCCCCccCc
Confidence            55678988774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.31  E-value=9.1e-08  Score=110.06  Aligned_cols=73  Identities=18%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             CCeEEEeeCCCCCCccc-----------------cchhhh--cCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCC
Q 038969          379 LPRIISLNLSSSGISGE-----------------IITYIF--SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNN  439 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~-----------------ip~~~~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  439 (678)
                      +++++.|+|++|.|+|.                 ||.+++  +|++|++|+|++|+++|.+|+.+++|++|+.|+|++|+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            56778888888888885                 888877  88888888888888888888888888888888888887


Q ss_pred             -CCC-CCcccchhh
Q 038969          440 -LEG-SVPAGLLER  451 (678)
Q Consensus       440 -l~G-~iP~~l~~~  451 (678)
                       ++| .+|..+..+
T Consensus       285 ~l~~~~lp~~~~~L  298 (636)
T 4eco_A          285 GISGEQLKDDWQAL  298 (636)
T ss_dssp             TSCHHHHHHHHHHH
T ss_pred             CCccccchHHHHhh
Confidence             888 788777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.30  E-value=3.8e-07  Score=94.46  Aligned_cols=90  Identities=27%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh-cccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA-KNGL  456 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~-~~~~  456 (678)
                      .+++++.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..++ .+. 
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-  251 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-  251 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC-
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC-
Confidence            357899999999999988888999999999999999999988888888999999999999999999998877664 333 


Q ss_pred             ccccccCCCCCcc
Q 038969          457 LSLSVDGNPKLCH  469 (678)
Q Consensus       457 l~l~~~~n~~lC~  469 (678)
                       .+.+.+|+-.|.
T Consensus       252 -~L~L~~N~~~~~  263 (306)
T 2z66_A          252 -FLNLTQNDFACT  263 (306)
T ss_dssp             -EEECTTCCEECS
T ss_pred             -EEEccCCCeecc
Confidence             345667876553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.28  E-value=5e-07  Score=98.93  Aligned_cols=89  Identities=24%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++..|..+.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+..+..  
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--  399 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK--  399 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE--
Confidence            457778888888887777777788888888888888888777877888888888888888887644444455554443  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+-.|.
T Consensus       400 L~l~~N~l~~~  410 (455)
T 3v47_A          400 IWLHTNPWDCS  410 (455)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEccCCCcccC
Confidence            34556765553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.28  E-value=3.9e-07  Score=103.72  Aligned_cols=88  Identities=22%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhc-cccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAK-NGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~-~~~l  457 (678)
                      +++++.|+|++|++++.+|..+.++++|+.|+|++|++++.+|..+..+++|+.|+|++|+++ .+|..+..+++ +.  
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~--  548 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA--  548 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC--
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc--
Confidence            467777788888777777777777788888888888888777777777778888888888877 67776555542 32  


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                      .+.+.+|+-.|.
T Consensus       549 ~l~l~~N~~~c~  560 (606)
T 3vq2_A          549 FFNLTNNSVACI  560 (606)
T ss_dssp             EEECCSCCCCCS
T ss_pred             EEEccCCCcccC
Confidence            345667777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.28  E-value=3e-07  Score=94.29  Aligned_cols=89  Identities=27%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+..+..  
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--  229 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY--  229 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE--
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE--
Confidence            568899999999999766667999999999999999999999999999999999999999999866666666665543  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+-.|.
T Consensus       230 L~l~~N~~~c~  240 (285)
T 1ozn_A          230 LRLNDNPWVCD  240 (285)
T ss_dssp             EECCSSCEECS
T ss_pred             EeccCCCccCC
Confidence            45668876663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.27  E-value=4.4e-07  Score=99.68  Aligned_cols=90  Identities=22%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|+|++..+..+..+.++.  
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--  293 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV--  293 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC--
T ss_pred             ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC--
Confidence            457899999999999999999999999999999999999999999999999999999999999976666666666544  


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                      .+.+.+||-.|.
T Consensus       294 ~L~L~~Np~~Cd  305 (452)
T 3zyi_A          294 ELHLHHNPWNCD  305 (452)
T ss_dssp             EEECCSSCEECS
T ss_pred             EEEccCCCcCCC
Confidence            355678887664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.27  E-value=4e-07  Score=92.73  Aligned_cols=105  Identities=24%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             CCCCCCCCCcccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhh
Q 038969          354 NWQGDPCAPKVYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSEL  427 (678)
Q Consensus       354 ~w~g~pc~p~~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  427 (678)
                      .|.|..|.-. ..|..+.|+...      .-++.++.|+|++|++++..+..|.++++|++|+|++|+++...+..+..+
T Consensus         6 ~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A            6 KKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             GGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            3555554211 135556665432      123468899999999987666689999999999999999986555666889


Q ss_pred             hhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          428 HFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       428 ~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++|+.|+|++|++++..+..+..+..+..+.+
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            99999999999998755555566665554444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=1.4e-07  Score=111.68  Aligned_cols=74  Identities=22%  Similarity=0.271  Sum_probs=57.9

Q ss_pred             CCeEEEeeCCCCCCcc-----------------ccchhhh--cCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCC
Q 038969          379 LPRIISLNLSSSGISG-----------------EIITYIF--SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNN  439 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G-----------------~ip~~~~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  439 (678)
                      +++++.|+|++|+|+|                 .||.+++  +|++|+.|+|++|++.|.+|..+++|++|+.|+|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5677888888888887                 4787776  88888888888888888888888888888888888887


Q ss_pred             -CCC-CCcccchhhh
Q 038969          440 -LEG-SVPAGLLERA  452 (678)
Q Consensus       440 -l~G-~iP~~l~~~~  452 (678)
                       |+| .+|..+..+.
T Consensus       527 ~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          527 GISAAQLKADWTRLA  541 (876)
T ss_dssp             TSCHHHHHHHHHHHH
T ss_pred             CcccccchHHHHhhh
Confidence             887 7777766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.26  E-value=3.2e-07  Score=88.87  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVP  445 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  445 (678)
                      ++++.|+|++|.+++..|..++.|++|+.|+|++|++++..|..++.+++|+.|+|++|.+.+.+|
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            344445555555544444444555555555555555554444444455555555555554333343

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.25  E-value=4.2e-07  Score=99.50  Aligned_cols=90  Identities=21%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|+|++..+..+..+..+.  
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--  282 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE--  282 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC--
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC--
Confidence            357899999999999999899999999999999999999999999999999999999999999976666566665544  


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                      .+.+.+||..|.
T Consensus       283 ~L~L~~Np~~Cd  294 (440)
T 3zyj_A          283 RIHLHHNPWNCN  294 (440)
T ss_dssp             EEECCSSCEECS
T ss_pred             EEEcCCCCccCC
Confidence            345678987774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.25  E-value=7.5e-07  Score=90.70  Aligned_cols=90  Identities=26%  Similarity=0.262  Sum_probs=73.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+..+.  
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--  208 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK--  208 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC--
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC--
Confidence            357899999999999976666689999999999999999988788899999999999999999965555565555544  


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                      .+.+.+|+..|.
T Consensus       209 ~L~l~~N~~~c~  220 (270)
T 2o6q_A          209 MLQLQENPWDCT  220 (270)
T ss_dssp             EEECCSSCBCCS
T ss_pred             EEEecCCCeeCC
Confidence            355678887774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.25  E-value=6.6e-07  Score=104.39  Aligned_cols=82  Identities=29%  Similarity=0.412  Sum_probs=71.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++|+.|+|++|.|+ .||..|++|++|+.|+|++|+|+ .||..|+.|++|+.|+|++|.|+ .||..+..+..+..|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            568899999999999 89999999999999999999999 88999999999999999999997 8999888887766554


Q ss_pred             ccccCCC
Q 038969          459 LSVDGNP  465 (678)
Q Consensus       459 l~~~~n~  465 (678)
                        +.+|+
T Consensus       323 --L~~N~  327 (727)
T 4b8c_D          323 --VEGNP  327 (727)
T ss_dssp             --CTTSC
T ss_pred             --CCCCc
Confidence              44564

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.25  E-value=3.8e-07  Score=96.63  Aligned_cols=94  Identities=23%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             cccccccCCCCCC--------CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhcc
Q 038969          365 YLWQGLNCSYDGN--------ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT  436 (678)
Q Consensus       365 ~~w~gv~C~~~~~--------~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls  436 (678)
                      |.|.|+ |+..+.        -.++++.|+|++|++++..+..+.++++|+.|+|++|++++..|..++++++|+.|+|+
T Consensus        30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            568886 443221        23578999999999997666689999999999999999998888889999999999999


Q ss_pred             CCCCCCCCcccchhhhccccccc
Q 038969          437 GNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       437 ~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +|++++..+..+..+.++..+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             CCcCCcCCHhHhCCCccCCEEEC
Confidence            99998644433666666555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.25  E-value=5.3e-07  Score=85.34  Aligned_cols=68  Identities=21%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVP  445 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  445 (678)
                      .+++++.|+|++|+|++..+..|..|++|+.|+|++|+|++..|..+..+++|+.|+|++|.|++..+
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            35789999999999997666678999999999999999998888889999999999999999998765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.25  E-value=4.9e-07  Score=92.26  Aligned_cols=91  Identities=22%  Similarity=0.127  Sum_probs=72.7

Q ss_pred             cccCCCCCC------CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          369 GLNCSYDGN------ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       369 gv~C~~~~~------~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      .+.|...+-      -++.++.|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++
T Consensus        11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            466765321      13468999999999998777789999999999999999998888888999999999999999998


Q ss_pred             CCcccchhhhccccccc
Q 038969          443 SVPAGLLERAKNGLLSL  459 (678)
Q Consensus       443 ~iP~~l~~~~~~~~l~l  459 (678)
                      ..|..+..+..+..+.+
T Consensus        91 ~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             ECTTTTTTCTTCCEEEC
T ss_pred             cChhhhcCCccccEEEC
Confidence            77777777766655544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.24  E-value=9.8e-07  Score=92.47  Aligned_cols=85  Identities=25%  Similarity=0.267  Sum_probs=74.5

Q ss_pred             ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          364 VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       364 ~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      .|.|..+.|+..+      .-.+.++.|+|++|++++..+..|.++++|++|+|++|++++..|..++.+++|+.|+|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3679999998543      1246789999999999987777899999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccch
Q 038969          438 NNLEGSVPAGLL  449 (678)
Q Consensus       438 N~l~G~iP~~l~  449 (678)
                      |+++ .+|..+.
T Consensus       110 n~l~-~l~~~~~  120 (330)
T 1xku_A          110 NQLK-ELPEKMP  120 (330)
T ss_dssp             SCCS-BCCSSCC
T ss_pred             CcCC-ccChhhc
Confidence            9998 6887665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.23  E-value=6e-07  Score=98.61  Aligned_cols=93  Identities=23%  Similarity=0.147  Sum_probs=75.9

Q ss_pred             cccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCC
Q 038969          367 WQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL  440 (678)
Q Consensus       367 w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  440 (678)
                      |..+.|+..+      +-++.++.|+|++|++++..|..|.+|++|+.|+|++|++++..|..+..+++|+.|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            5678887643      1245789999999999998888999999999999999999998889999999999999999999


Q ss_pred             CCCCcccchhhhccccccc
Q 038969          441 EGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       441 ~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++..|..+..+.++..+++
T Consensus       136 ~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEEC
T ss_pred             CccChhhhcccCCCCEEEC
Confidence            9655555666666555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.23  E-value=9.6e-07  Score=92.67  Aligned_cols=85  Identities=27%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          364 VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       364 ~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      .|.|..+.|+..+      .-.+.++.|+|++|++++..|..|.++++|+.|+|++|++++..|..++.+++|+.|+|++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            3679999998643      1245799999999999988888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccch
Q 038969          438 NNLEGSVPAGLL  449 (678)
Q Consensus       438 N~l~G~iP~~l~  449 (678)
                      |+++ .+|..+.
T Consensus       112 n~l~-~l~~~~~  122 (332)
T 2ft3_A          112 NHLV-EIPPNLP  122 (332)
T ss_dssp             SCCC-SCCSSCC
T ss_pred             CcCC-ccCcccc
Confidence            9998 7887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.23  E-value=3.3e-07  Score=86.15  Aligned_cols=82  Identities=26%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCC-CChhhhhhhhhhhhhccCCCCCCCCc---ccchhhhc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGS-VPEFLSELHFLRVLNLTGNNLEGSVP---AGLLERAK  453 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~iP---~~l~~~~~  453 (678)
                      .+++++.|+|++|++++.+|..+..+++|+.|+|++|++++. .+..+..+++|+.|+|++|.+++..+   ..+..+++
T Consensus        69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence            357899999999999999998899999999999999999974 34789999999999999999997655   35666665


Q ss_pred             cccccc
Q 038969          454 NGLLSL  459 (678)
Q Consensus       454 ~~~l~l  459 (678)
                      +..+++
T Consensus       149 L~~L~l  154 (168)
T 2ell_A          149 LTYLDG  154 (168)
T ss_dssp             CCEETT
T ss_pred             CcEecC
Confidence            554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.22  E-value=7.4e-07  Score=90.89  Aligned_cols=81  Identities=22%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++.++.|+|++|++++..|..+..+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..+.++..++
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            56899999999999987777789999999999999999988888888999999999999999977776666666655554


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       188 L  188 (272)
T 3rfs_A          188 L  188 (272)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.22  E-value=3.1e-07  Score=95.78  Aligned_cols=84  Identities=21%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             CCeEEEeeCCCCCCccccchhh--hcCcCCCeeccCCCcCCCCCChhhhhh-----hhhhhhhccCCCCCCCCcccchhh
Q 038969          379 LPRIISLNLSSSGISGEIITYI--FSLTSLQALDLSNNSLTGSVPEFLSEL-----HFLRVLNLTGNNLEGSVPAGLLER  451 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~ls~N~l~G~iP~~l~~~  451 (678)
                      +++++.|+|++|+++|.+|..+  ..+++|+.|+|++|++++. |..++.+     ++|+.|+|++|++++..|..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3578888888888888888876  8888888888888888887 8888887     788888888888888777777777


Q ss_pred             hccccccccccCCC
Q 038969          452 AKNGLLSLSVDGNP  465 (678)
Q Consensus       452 ~~~~~l~l~~~~n~  465 (678)
                      .++..+++  .+|.
T Consensus       173 ~~L~~L~L--s~N~  184 (312)
T 1wwl_A          173 PALSTLDL--SDNP  184 (312)
T ss_dssp             SSCCEEEC--CSCT
T ss_pred             CCCCEEEC--CCCC
Confidence            76655444  3453

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.22  E-value=9.8e-07  Score=90.42  Aligned_cols=80  Identities=21%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCC-CCCCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNN-LEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~-l~G~iP~~l~~~~~~~~l  457 (678)
                      ++.++.|+|++|++++..+..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|. ++...|..+..+.++..+
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4567777777777776666667777777777777777777777777777777777777776 554446666555555444


Q ss_pred             c
Q 038969          458 S  458 (678)
Q Consensus       458 ~  458 (678)
                      +
T Consensus       111 ~  111 (285)
T 1ozn_A          111 H  111 (285)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.21  E-value=5.6e-07  Score=102.46  Aligned_cols=93  Identities=22%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             cccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCC
Q 038969          367 WQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL  440 (678)
Q Consensus       367 w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  440 (678)
                      +.-+.|+..+      .-++.++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|+.|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            3446786542      1235688888888888887788888888888888888888888888888888888888888888


Q ss_pred             CCCCcccchhhhccccccc
Q 038969          441 EGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       441 ~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++..|..+..+..++.+++
T Consensus        94 ~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             SEECTTTTSSCTTCCEEEC
T ss_pred             cccChhhhcccccccEeec
Confidence            8877877776666554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.20  E-value=1e-06  Score=97.20  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             ccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCC
Q 038969          366 LWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNN  439 (678)
Q Consensus       366 ~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  439 (678)
                      .|..|.|+..+      .-++.++.|+|++|++++..|..|.++++|+.|+|++|++++..|..+++|++|+.|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            36788887543      124577888888888888778888888888888888888888888888888888888888888


Q ss_pred             CCCCCcccchhhhccccccc
Q 038969          440 LEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       440 l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +++..+..+..+..+..+++
T Consensus        92 l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEEC
T ss_pred             CCccCcccccCCCCCCEEEC
Confidence            88544444555555544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.20  E-value=5.9e-07  Score=102.24  Aligned_cols=87  Identities=32%  Similarity=0.320  Sum_probs=66.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++.+|..+..+++|+.|+|++|++++.+|..+.+++.| .|+|++|++++.+|..+..+.++..  
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~--  551 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT--  551 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE--
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE--
Confidence            4677788888888887777788888888888888888888888888888888 8888888888777776666665543  


Q ss_pred             ccccCCCCCc
Q 038969          459 LSVDGNPKLC  468 (678)
Q Consensus       459 l~~~~n~~lC  468 (678)
                      +.+.+|+-.|
T Consensus       552 L~l~~N~~~c  561 (606)
T 3t6q_A          552 INLRQNPLDC  561 (606)
T ss_dssp             EECTTCCEEC
T ss_pred             EeCCCCCccc
Confidence            4456777666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.19  E-value=7.9e-07  Score=100.67  Aligned_cols=75  Identities=29%  Similarity=0.393  Sum_probs=66.8

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccccc
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS  460 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l~  460 (678)
                      .++.|+|++|+|++ +|. |+.|++|+.|+|++|+|+ .+|..++.|++|+.|+|++|+|++ +| .+..+..+..++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47789999999997 776 999999999999999999 999999999999999999999998 88 78777776655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.18  E-value=7e-07  Score=95.11  Aligned_cols=68  Identities=24%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG  447 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  447 (678)
                      +++|+.|+|++|+|++..+..|..|++|+.|+|++|++++..|..+..+++|+.|+|++|+|++ +|..
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~  154 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVE  154 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGG
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHH
Confidence            4566667777776665555556666777777777777766666666666777777777777664 4444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.17  E-value=7.4e-07  Score=100.43  Aligned_cols=89  Identities=22%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             CCeEEEeeCCCCCCc-cccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGIS-GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~-G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|.++ |.+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+.++.. 
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-  522 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK-  522 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE-
Confidence            567778888888877 577777888888888888888888877888888888888888888888776666666655443 


Q ss_pred             cccccCCCCCcc
Q 038969          458 SLSVDGNPKLCH  469 (678)
Q Consensus       458 ~l~~~~n~~lC~  469 (678)
                       +.+.+|+-.|.
T Consensus       523 -L~l~~N~~~~~  533 (570)
T 2z63_A          523 -IWLHTNPWDCS  533 (570)
T ss_dssp             -EECCSSCBCCC
T ss_pred             -EEecCCcccCC
Confidence             34557766553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.16  E-value=8.3e-07  Score=84.26  Aligned_cols=81  Identities=22%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcc--cchhhhccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA--GLLERAKNGLL  457 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~--~l~~~~~~~~l  457 (678)
                      ++++.|+|++|.+++.  ..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|.  .+..++.+.. 
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~-  117 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY-  117 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE-
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE-
Confidence            4788899999999875  67888999999999999998665565688999999999999985 5776  5665555443 


Q ss_pred             cccccCCC
Q 038969          458 SLSVDGNP  465 (678)
Q Consensus       458 ~l~~~~n~  465 (678)
                       +.+.+|+
T Consensus       118 -L~l~~N~  124 (176)
T 1a9n_A          118 -LCILRNP  124 (176)
T ss_dssp             -EECCSSG
T ss_pred             -EEecCCC
Confidence             3444554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.14  E-value=1.5e-06  Score=98.94  Aligned_cols=81  Identities=22%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++..+..|.++++|++|+|++|++++..|..++++++|+.|+|++|++++..|..+..+.++..++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            35677777777777766666777777777777777777776677777777777777777777766676666665554443


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       111 L  111 (606)
T 3vq2_A          111 A  111 (606)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.13  E-value=1.4e-06  Score=82.82  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVP  445 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  445 (678)
                      .+++++.|+|++|+|++..+..|.+|++|+.|+|++|+|++..|..+..+++|+.|+|++|.++...+
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            35789999999999998555567999999999999999997777779999999999999999996443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.12  E-value=8.9e-07  Score=93.48  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=66.4

Q ss_pred             EeeCCCC-CCccccchhhhcCcCCCeeccCC-CcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccccc
Q 038969          384 SLNLSSS-GISGEIITYIFSLTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLS  460 (678)
Q Consensus       384 ~l~Ls~n-~l~G~ip~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l~  460 (678)
                      .++++++ +|++ ||. |..+++|+.|+|++ |+|++..|..|+.|++|+.|+|++|+|+|..|..+..+.++..|+|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3688998 8985 898 99999999999996 99999999999999999999999999999888888888877665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.11  E-value=1.3e-06  Score=99.67  Aligned_cols=79  Identities=22%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..++.+++|+.|+|++|.|++..|..+..+..+..++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            5677888888888877777888888888888888888887777778888888888888888743333345555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.10  E-value=1.8e-06  Score=89.04  Aligned_cols=85  Identities=29%  Similarity=0.351  Sum_probs=67.3

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc-chhhhcccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG-LLERAKNGL  456 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~-l~~~~~~~~  456 (678)
                      .+++++.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|+|++ +|.. +..+.++..
T Consensus        98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~  176 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDT  176 (290)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCE
Confidence            35688999999999997777789999999999999999998777778899999999999999995 5544 445555554


Q ss_pred             ccccccCCC
Q 038969          457 LSLSVDGNP  465 (678)
Q Consensus       457 l~l~~~~n~  465 (678)
                      +.  +.+|.
T Consensus       177 L~--L~~N~  183 (290)
T 1p9a_G          177 LL--LQENS  183 (290)
T ss_dssp             EE--CCSSC
T ss_pred             EE--CCCCc
Confidence            44  34453

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.09  E-value=2.1e-06  Score=87.52  Aligned_cols=74  Identities=20%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC-CCChhhhhhhhhhhhhccCCCCCCCCcccchhhhc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAK  453 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  453 (678)
                      ++++.|+|++|++++..+..+..+++|+.|+|++|++++ .+|..++.+++|+.|+|++|++++..|..+..+..
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            455555555555554444445555555555555555554 34555555555555555555555444444444433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.09  E-value=1.5e-06  Score=97.60  Aligned_cols=79  Identities=30%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC-CCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG-SVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G-~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|++++..|..|++|++|++|+|++|++++..|..++.+++|+.|+|++|++++ .+|..+..+.++..+
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            3456666666666666555566666666666666666666555556666666666666666665 345555554444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.09  E-value=2.6e-06  Score=98.34  Aligned_cols=94  Identities=22%  Similarity=0.217  Sum_probs=61.6

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      |.+.-+.|+..+      .-+++++.|+|++|++++..+..|.++++|++|+|++|++++..|..++++++|+.|+|++|
T Consensus         4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            345556666432      12346777888888777766667777777777777777777777777777777777777777


Q ss_pred             CCCCCCcccchhhhcccccc
Q 038969          439 NLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       439 ~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++++..+..+..+..+..++
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEE
T ss_pred             ccCccChhhhccCCCCCEEE
Confidence            77743333455555444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.08  E-value=2.1e-06  Score=83.06  Aligned_cols=82  Identities=24%  Similarity=0.270  Sum_probs=68.3

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|++|++++ +| .+..++++..+ 
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L-  186 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL-  186 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE-
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE-
Confidence            5789999999999999999999999999999999999667888 68999999999999999997 44 56666655544 


Q ss_pred             ccccCCC
Q 038969          459 LSVDGNP  465 (678)
Q Consensus       459 l~~~~n~  465 (678)
                       .+.+|+
T Consensus       187 -~l~~N~  192 (197)
T 4ezg_A          187 -YAFSQT  192 (197)
T ss_dssp             -EECBC-
T ss_pred             -EeeCcc
Confidence             344553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.07  E-value=1.9e-06  Score=95.72  Aligned_cols=30  Identities=13%  Similarity=0.123  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHHH--hcCCCCcccEEEEEEcCC
Q 038969          572 QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT  601 (678)
Q Consensus       572 ~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~  601 (678)
                      ++.++|.+|++.  .++|+|+|+++|||....
T Consensus       321 ~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          321 QGSETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccHHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            446789999998  499999999999997643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.07  E-value=1.5e-06  Score=90.05  Aligned_cols=85  Identities=22%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCeEEEeeCCCCCCcc-ccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISG-EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G-~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|.+++ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+..+..+
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            5689999999999998 678889999999999999999999999999999999999999999998766677666666555


Q ss_pred             cccccCCC
Q 038969          458 SLSVDGNP  465 (678)
Q Consensus       458 ~l~~~~n~  465 (678)
                      ++  .+|.
T Consensus       229 ~L--~~N~  234 (306)
T 2z66_A          229 DY--SLNH  234 (306)
T ss_dssp             EC--TTSC
T ss_pred             EC--CCCC
Confidence            44  4553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.07  E-value=1.9e-06  Score=95.15  Aligned_cols=88  Identities=31%  Similarity=0.348  Sum_probs=56.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|+|++..+..+..+.++..  
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--  324 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET--  324 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE--
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE--
Confidence            356677777777777666666777777777777777777777777777777777777777777544444444444333  


Q ss_pred             ccccCCCCCc
Q 038969          459 LSVDGNPKLC  468 (678)
Q Consensus       459 l~~~~n~~lC  468 (678)
                      +.+.+|+-.|
T Consensus       325 L~l~~N~l~c  334 (477)
T 2id5_A          325 LILDSNPLAC  334 (477)
T ss_dssp             EECCSSCEEC
T ss_pred             EEccCCCccC
Confidence            3345666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=1.7e-06  Score=88.02  Aligned_cols=66  Identities=29%  Similarity=0.436  Sum_probs=57.5

Q ss_pred             CCeEEEeeCCCCCCcc--ccchhhhcCcCCCeeccCCCcCCCCCChhhhhhh--hhhhhhccCCCCCCCCcc
Q 038969          379 LPRIISLNLSSSGISG--EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELH--FLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G--~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~ls~N~l~G~iP~  446 (678)
                      +++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..|+  .|+.|+|++|.+++.+|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            5789999999999998  7788889999999999999999976  4466666  899999999999998874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.06  E-value=2.3e-06  Score=93.52  Aligned_cols=92  Identities=21%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             cccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCC
Q 038969          367 WQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL  440 (678)
Q Consensus       367 w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  440 (678)
                      |..|.|+..+      .-++.++.|+|++|++++..+..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            5678887642      1235677888888888877777888888888888888888877778888888888888888888


Q ss_pred             CCCCcccchhhhcccccc
Q 038969          441 EGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       441 ~G~iP~~l~~~~~~~~l~  458 (678)
                      ++..+..+..+.++..++
T Consensus       125 ~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEE
T ss_pred             CeeCHhHhhccccCceee
Confidence            855444555555544443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.05  E-value=1.8e-06  Score=81.85  Aligned_cols=79  Identities=23%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCCh--hhhhhhhhhhhhccCCCCCCCCccc----chhh
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE--FLSELHFLRVLNLTGNNLEGSVPAG----LLER  451 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~ls~N~l~G~iP~~----l~~~  451 (678)
                      .+++++.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|.  .+..+++|+.|+|++|.++ .+|..    +..+
T Consensus        62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l  139 (176)
T 1a9n_A           62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV  139 (176)
T ss_dssp             CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred             cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence            3578999999999999654444699999999999999995 6787  8899999999999999998 56764    5566


Q ss_pred             hcccccc
Q 038969          452 AKNGLLS  458 (678)
Q Consensus       452 ~~~~~l~  458 (678)
                      +.+..++
T Consensus       140 ~~L~~Ld  146 (176)
T 1a9n_A          140 PQVRVLD  146 (176)
T ss_dssp             TTCSEET
T ss_pred             CccceeC
Confidence            6555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.05  E-value=2e-06  Score=90.05  Aligned_cols=78  Identities=28%  Similarity=0.349  Sum_probs=55.6

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|..+..+..+..++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            46677777777777776777777777777777777777777767777777777777777777 6777666655544433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.02  E-value=1.4e-06  Score=98.36  Aligned_cols=80  Identities=26%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             CCCCCCCcccccccc-cCCCCCCCCCeEEEeeCCCCCCccccchhh------------------hcCcCCCeeccCCCcC
Q 038969          356 QGDPCAPKVYLWQGL-NCSYDGNELPRIISLNLSSSGISGEIITYI------------------FSLTSLQALDLSNNSL  416 (678)
Q Consensus       356 ~g~pc~p~~~~w~gv-~C~~~~~~~~~l~~l~Ls~n~l~G~ip~~~------------------~~l~~L~~L~Ls~N~l  416 (678)
                      +++||.-....|.|+ .|..     .+++.|+|++|+|++ ||..+                  ..+++|+.|+|++|+|
T Consensus        39 ~~~~~~~~~~~~~~l~~C~~-----~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l  112 (571)
T 3cvr_A           39 QALPGENRNEAVSLLKECLI-----NQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRL  112 (571)
T ss_dssp             TCCTTCCHHHHHHHHHHHHH-----TTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cCCccccccchhhhcccccc-----CCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCC
Confidence            345775333358887 5642     134444555554444 44433                  2345555555555555


Q ss_pred             CCCCChhhhhhhhhhhhhccCCCCCCCCcc
Q 038969          417 TGSVPEFLSELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       417 ~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      ++ ||. +.+  +|+.|+|++|+|++ ||.
T Consensus       113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~  137 (571)
T 3cvr_A          113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE  137 (571)
T ss_dssp             SC-CCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred             CC-cch-hhc--CCCEEECCCCcCCC-CCC
Confidence            54 444 333  55555555555554 444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.02  E-value=2.3e-06  Score=89.82  Aligned_cols=74  Identities=28%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccc
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNG  455 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~  455 (678)
                      +++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|..+..+..+.
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~  267 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ  267 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence            4455555555555554455555555555555555555555555555555555555555555 4555544444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.02  E-value=1.8e-06  Score=96.24  Aligned_cols=60  Identities=25%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC-CCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|+++ .||..  .+++|++|+|++|++++ .+|..++.+++|+.|+|++|++++
T Consensus        69 ~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           69 QELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             TTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            45555555555555 34444  45555555555555554 355555555555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.00  E-value=3.5e-06  Score=96.01  Aligned_cols=65  Identities=23%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +++++.|+|++|.+++..+..|+++++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            45667777777777643333456777777777777777766666677777777777777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.98  E-value=2.1e-06  Score=95.77  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC--CCChhhhhhhhhhhhhccCCCCCCCCccc-chhhhccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG--SVPEFLSELHFLRVLNLTGNNLEGSVPAG-LLERAKNG  455 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~ls~N~l~G~iP~~-l~~~~~~~  455 (678)
                      ++.++.|+|++|.+++.+|..+..+++|+.|+|++|++++  .+|..++.+++|+.|+|++|++++.+|.. +..+..+.
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4678888888888888888888888888888888888887  67788888888888888888888877765 33344443


Q ss_pred             cc
Q 038969          456 LL  457 (678)
Q Consensus       456 ~l  457 (678)
                      .+
T Consensus       403 ~L  404 (520)
T 2z7x_B          403 SL  404 (520)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.96  E-value=9.7e-07  Score=91.95  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcC-----cCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l-----~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +++++.|+|++|++++. |..+..+     ++|++|+|++|++++..|..++.+++|+.|+|++|++.|.
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            56788888888888877 7777777     7888888888888887778888888888888888888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.94  E-value=1.8e-06  Score=86.05  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=64.6

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCc-CCCCCChhhhhhhhhhhhhccC-CCCCCCCcccchhhhccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS-LTGSVPEFLSELHFLRVLNLTG-NNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l~~L~~L~ls~-N~l~G~iP~~l~~~~~~~~l  457 (678)
                      +.++.|+|++|++++..+..|.++++|+.|+|++|+ +++..|..+..+++|+.|+|++ |++++..|..+..+.++..+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478899999999997777789999999999999997 7766666888999999999998 99986555666666665555


Q ss_pred             cc
Q 038969          458 SL  459 (678)
Q Consensus       458 ~l  459 (678)
                      ++
T Consensus       111 ~l  112 (239)
T 2xwt_C          111 GI  112 (239)
T ss_dssp             EE
T ss_pred             eC
Confidence            44

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.93  E-value=3.8e-06  Score=93.31  Aligned_cols=78  Identities=22%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CCeEEEeeCCCCCCccccchhhh-cCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIF-SLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|.++|.+|..+. .|++|+.|+|++|.|++. |. +..+++|+.|+|++|+|+| +|..+..+..+..+
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            45777777777777777777665 677777777777777765 22 2347778888888888876 44446666655544


Q ss_pred             cc
Q 038969          458 SL  459 (678)
Q Consensus       458 ~l  459 (678)
                      ++
T Consensus       220 ~L  221 (487)
T 3oja_A          220 SL  221 (487)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.92  E-value=3.7e-06  Score=94.89  Aligned_cols=60  Identities=25%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC-CCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG-SVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|+++ .||..  .+++|+.|+|++|++++ ++|..++++++|+.|+|++|++++
T Consensus       100 ~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          100 QDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            44555555555554 34444  45555555555555554 344555555555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.91  E-value=5.1e-06  Score=93.51  Aligned_cols=74  Identities=24%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             eEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcc
Q 038969          381 RIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKN  454 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~  454 (678)
                      +++.|+|++|++++..+..|.++++|++|||++|++++..|..++++++|+.|+|++|++++..|..+..+..+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            45555555555555555555555555555555555555555555555555555555555554444444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.91  E-value=2.4e-06  Score=101.43  Aligned_cols=83  Identities=24%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             CCCeEEEeeCCCCCCcccc-chhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc--chhhhcc
Q 038969          378 ELPRIISLNLSSSGISGEI-ITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG--LLERAKN  454 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~i-p~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~--l~~~~~~  454 (678)
                      .+++++.|+|++|.+.+.| |..|.+|++|++|+|++|++++..|+.++.|++|+.|+|++|++++.+|..  +..+.++
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            3567777777777777777 556888888888888888888888888888888888888888888877765  6666665


Q ss_pred             cccccc
Q 038969          455 GLLSLS  460 (678)
Q Consensus       455 ~~l~l~  460 (678)
                      ..++++
T Consensus       126 ~~L~Ls  131 (844)
T 3j0a_A          126 TRLDLS  131 (844)
T ss_dssp             CEEEEE
T ss_pred             CEEECC
Confidence            555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.90  E-value=6.5e-07  Score=86.71  Aligned_cols=76  Identities=20%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++ +| .+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+..+..++
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            4678899999999887 77 8889999999999999988 788888888999999999999986 66 566666655544


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       122 l  122 (198)
T 1ds9_A          122 M  122 (198)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.90  E-value=4.4e-06  Score=94.30  Aligned_cols=67  Identities=27%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG  447 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  447 (678)
                      ++++.|+|++|.+++..|..|.++++|++|+|++|++++..|+.++.+++|+.|+|++|+++ .+|..
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  118 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC  118 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc
Confidence            45566666666666555556666666666666666666655666666666666666666655 45544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.90  E-value=9.4e-07  Score=85.59  Aligned_cols=78  Identities=21%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CeEEEeeCCCCCCccccch------hhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhc
Q 038969          380 PRIISLNLSSSGISGEIIT------YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAK  453 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~------~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  453 (678)
                      .+++.++|+.+.|+|.+|.      .+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|+++ .+|..+..+..
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4677888999999998887      89999999999999999998 88 8999999999999999999 78887766666


Q ss_pred             ccccccc
Q 038969          454 NGLLSLS  460 (678)
Q Consensus       454 ~~~l~l~  460 (678)
                      +..++++
T Consensus        95 L~~L~L~  101 (198)
T 1ds9_A           95 LEELWIS  101 (198)
T ss_dssp             CSEEEEE
T ss_pred             CCEEECc
Confidence            6655543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.90  E-value=3.5e-06  Score=87.52  Aligned_cols=64  Identities=17%  Similarity=0.088  Sum_probs=36.9

Q ss_pred             CCeEEEeeCCCCCCccccc----hhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEII----TYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip----~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      .++++.|+|++|.+++.+|    ..+..+++|+.|+|++|++++..|..++.+++|+.|+|++|++.|
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence            3455566666666665443    233455666666666666665555566666666666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.89  E-value=3.8e-06  Score=87.29  Aligned_cols=68  Identities=34%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             CeEEEeeCCCCCCc--cccchh-hhcCcCCCeeccCCCcCCCCCChhhhhh---hhhhhhhccCCCCCCCCcccc
Q 038969          380 PRIISLNLSSSGIS--GEIITY-IFSLTSLQALDLSNNSLTGSVPEFLSEL---HFLRVLNLTGNNLEGSVPAGL  448 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~--G~ip~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l---~~L~~L~ls~N~l~G~iP~~l  448 (678)
                      ++++.|+|++|+++  +.++.. +.++++|++||||+|++++.+|+.+..+   ++|+.|+|++|+++ .+|..+
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            34555555555554  111222 3445555555555555555555444444   35555555555555 445444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.89  E-value=6.2e-06  Score=87.23  Aligned_cols=80  Identities=30%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcc--cchhhhcccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA--GLLERAKNGL  456 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~--~l~~~~~~~~  456 (678)
                      +++++.|+|++|++++..|..|.++++|++|+|++|++++..+..++.+++|+.|+|++|++++ +|.  .+..+.++..
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence            4678888888888888777778888888888888888886555557888888888888888884 555  5555655554


Q ss_pred             ccc
Q 038969          457 LSL  459 (678)
Q Consensus       457 l~l  459 (678)
                      +++
T Consensus       154 L~l  156 (353)
T 2z80_A          154 LRV  156 (353)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.89  E-value=7.6e-06  Score=87.73  Aligned_cols=62  Identities=24%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CeEEEeeCCCCCCccccchh-hhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITY-IFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|+++ .+|.. +.++++|+.|+|++|++++..|..++.+++|+.|+|++|++++
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            44455555555554 23322 3445555555555555554444444555555555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.84  E-value=9.8e-06  Score=86.87  Aligned_cols=82  Identities=20%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      .+++++.|+|++|++++..|..+.++++|+.|+|++|+++...+..++.+++|+.|+|++|++++..|..+..+.++..+
T Consensus        91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            35789999999999998888889999999999999999994444446889999999999999998777777777766555


Q ss_pred             cc
Q 038969          458 SL  459 (678)
Q Consensus       458 ~l  459 (678)
                      ++
T Consensus       171 ~l  172 (390)
T 3o6n_A          171 QL  172 (390)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.80  E-value=1.1e-05  Score=93.07  Aligned_cols=71  Identities=24%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccch
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLL  449 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  449 (678)
                      +++++.|+|++|++++..|..|++|++|++|+|++|++++..|..++++++|+.|+|++|++++..|..+.
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  166 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD  166 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence            56889999999999877777899999999999999999998888888999999999999999887776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.73  E-value=1.2e-05  Score=83.85  Aligned_cols=83  Identities=22%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +.++.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+..+..  +
T Consensus       169 ~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~--L  242 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH--F  242 (317)
T ss_dssp             TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE--E
T ss_pred             CcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE--E
Confidence            4566666666666544 2 22346666666666666664 3344666666666666666666 45665554444332  3


Q ss_pred             cccCCCCCc
Q 038969          460 SVDGNPKLC  468 (678)
Q Consensus       460 ~~~~n~~lC  468 (678)
                      .+.+|+-.|
T Consensus       243 ~l~~N~~~~  251 (317)
T 3o53_A          243 DLRGNGFHC  251 (317)
T ss_dssp             ECTTCCCBH
T ss_pred             EccCCCccC
Confidence            344555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.73  E-value=5e-06  Score=88.00  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             ccccccccCCCCC------CCCCeEEEeeCCCCCCccccch-hhhcCcCCCeeccCCCcCCCCCCh-hhhhhhhhh-hhh
Q 038969          364 VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIIT-YIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLR-VLN  434 (678)
Q Consensus       364 ~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~-~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~-~L~  434 (678)
                      .|+|..|.|+..+      +-++.++.|+|++|+++ .||+ .|.+|++|+.|+|++|++.+.+|. .+.+|++|. .+.
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            3788899997643      12357899999999999 4554 699999999999999999888875 467787765 467


Q ss_pred             ccCCCCCCCCcccchhhhccccccc
Q 038969          435 LTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       435 ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +++|++++-.|..+..+.++..+.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             ccCCcccccCchhhhhccccccccc
Confidence            7789998766777776666655544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.72  E-value=1.7e-05  Score=83.32  Aligned_cols=81  Identities=27%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++.  +.+..+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|  +..++++..+ 
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L-  338 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA-  338 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE-
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee-
Confidence            56889999999998874  458889999999999999999999999999999999999999998777  5555554443 


Q ss_pred             ccccCCC
Q 038969          459 LSVDGNP  465 (678)
Q Consensus       459 l~~~~n~  465 (678)
                       .+.+|+
T Consensus       339 -~l~~N~  344 (347)
T 4fmz_A          339 -DFANQV  344 (347)
T ss_dssp             -SSSCC-
T ss_pred             -ehhhhc
Confidence             344553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.71  E-value=5.3e-06  Score=82.60  Aligned_cols=73  Identities=23%  Similarity=0.341  Sum_probs=49.1

Q ss_pred             CCeEEEeeCCCCC-CccccchhhhcCcCCCeeccCC-CcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhc
Q 038969          379 LPRIISLNLSSSG-ISGEIITYIFSLTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAK  453 (678)
Q Consensus       379 ~~~l~~l~Ls~n~-l~G~ip~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  453 (678)
                      .++++.|+|++|+ +++..+..|.++++|+.|+|++ |++++..|..+..+++|+.|+|++|++++ +|. +..+..
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence            4567777777776 5544444677777777777776 77776666667777777777777777775 665 444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.65  E-value=1.4e-05  Score=81.22  Aligned_cols=82  Identities=27%  Similarity=0.397  Sum_probs=60.0

Q ss_pred             eeCCCCC---CccccchhhhcCcCCCeeccCCCcCCC--CCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          385 LNLSSSG---ISGEIITYIFSLTSLQALDLSNNSLTG--SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       385 l~Ls~n~---l~G~ip~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++++.|.   +.+.++....++++|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+..+.+-.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            4556663   333344444678999999999999999  7889999999999999999999975  34444442233456


Q ss_pred             cccCCCCCcc
Q 038969          460 SVDGNPKLCH  469 (678)
Q Consensus       460 ~~~~n~~lC~  469 (678)
                      .+.+|| +|+
T Consensus       226 ~L~~Np-l~~  234 (267)
T 3rw6_A          226 WLDGNS-LCD  234 (267)
T ss_dssp             ECTTST-TGG
T ss_pred             EccCCc-Ccc
Confidence            677887 554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.62  E-value=4.3e-05  Score=78.63  Aligned_cols=71  Identities=32%  Similarity=0.431  Sum_probs=41.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNG  455 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~  455 (678)
                      +++++.|+|++|++++.  +.+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++ +|. +..+.++.
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~  203 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLD  203 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCS
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCC
Confidence            34566666666666653  456666666666666666665443  5666666666666666664 332 44444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.62  E-value=2.7e-05  Score=80.15  Aligned_cols=75  Identities=36%  Similarity=0.425  Sum_probs=59.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++.  +.+..+++|+.|+|++|++++.  +.++.+++|+.|+|++|++++..|  +..+..+..++
T Consensus       111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            46888999999998873  4688899999999999999875  578889999999999999987655  66666555444


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       185 L  185 (291)
T 1h6t_A          185 L  185 (291)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.60  E-value=6.5e-06  Score=85.81  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC-CCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE-GSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~-G~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|++++ +|+.+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.++ +.+|..+..+..+..+
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            5789999999999996 5666999999999999999999 68999999999999999999999 7788777766655444


Q ss_pred             cc
Q 038969          458 SL  459 (678)
Q Consensus       458 ~l  459 (678)
                      .+
T Consensus       268 ~l  269 (317)
T 3o53_A          268 AK  269 (317)
T ss_dssp             HH
T ss_pred             EC
Confidence            33

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.60  E-value=5.6e-06  Score=86.58  Aligned_cols=80  Identities=23%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CCeEEEeeCCCCCCccc-cchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC-CCCCC-Ccccchhhhccc
Q 038969          379 LPRIISLNLSSSGISGE-IITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN-NLEGS-VPAGLLERAKNG  455 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~-ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N-~l~G~-iP~~l~~~~~~~  455 (678)
                      .++++.|+|++|.+++. +|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++| .+++. +|..+..+.++.
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            35677777777777665 6666777777777777777777777777777777777777777 56653 555455555444


Q ss_pred             ccc
Q 038969          456 LLS  458 (678)
Q Consensus       456 ~l~  458 (678)
                      .++
T Consensus       172 ~L~  174 (336)
T 2ast_B          172 ELN  174 (336)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.59  E-value=3.9e-05  Score=87.38  Aligned_cols=74  Identities=31%  Similarity=0.432  Sum_probs=48.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++|+.|+|++|.|++.  +.+..|++|+.|+|++|+|++..|  +..|++|+.|+|++|+|++ +| .+..+..+..|+
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  203 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  203 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEE
Confidence            45677777777777764  557777777777777777776655  6677777777777777775 33 355555444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.58  E-value=3e-05  Score=88.30  Aligned_cols=61  Identities=31%  Similarity=0.348  Sum_probs=37.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +++|+.|+|++|.|++.+|  +..|++|+.|+|++|+|++. | .+..|++|+.|+|++|++++.
T Consensus       152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            3556666666666665544  66666666666666666652 3 356666666666666666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.58  E-value=2.3e-05  Score=86.21  Aligned_cols=65  Identities=26%  Similarity=0.425  Sum_probs=24.3

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCC--CCChhhhhh-------------hhhhhhhccCCCCCC--
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG--SVPEFLSEL-------------HFLRVLNLTGNNLEG--  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~ls~N~l~G--  442 (678)
                      ++++.|+|++|.++ .+|.   .+++|+.|+|++|+++|  .+|..+..|             ++|+.|+|++|+++|  
T Consensus       337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~  412 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP  412 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred             CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence            34555555555555 3444   34555666666666655  555555555             555566666666555  


Q ss_pred             CCcccc
Q 038969          443 SVPAGL  448 (678)
Q Consensus       443 ~iP~~l  448 (678)
                      .||.++
T Consensus       413 ~iP~sl  418 (454)
T 1jl5_A          413 DIPESV  418 (454)
T ss_dssp             ------
T ss_pred             cchhhH
Confidence            555543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.57  E-value=6.6e-05  Score=77.61  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=89.4

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCC--cccEEEEEEcCC---eeEEEEecC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKN--LTTLVGYCDEDT---NMGLIYEFM  610 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~N--Iv~l~g~~~~~~---~~~LV~Ey~  610 (678)
                      +.++.|....||+..     ..+++|+....  .....+.+|+..+  + .+..  +.+.+......+   ..++|||++
T Consensus        26 ~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             EecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            457889999999862     45888986533  3345677777663  3 3332  445555543333   347899999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcC------------------------------------------
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG------------------------------------------  648 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~------------------------------------------  648 (678)
                      +|..|.+...  ..++..++..++.++++.|+ .||.-                                          
T Consensus        99 ~G~~l~~~~~--~~l~~~~~~~~~~~l~~~la-~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  175 (304)
T 3sg8_A           99 KGVPLTPLLL--NNLPKQSQNQAAKDLARFLS-ELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD  175 (304)
T ss_dssp             CCEECCHHHH--HTSCHHHHHHHHHHHHHHHH-HHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             CCeECCcccc--ccCCHHHHHHHHHHHHHHHH-HHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence            9988865432  34788888899999999999 88861                                          


Q ss_pred             -------------CCCCccccCCCCCC----C--CCcEEEEeeCCcc
Q 038969          649 -------------CCPHICESSSSSNP----H--KNIVKLITFSIIK  676 (678)
Q Consensus       649 -------------~~~~iiHrDlk~~N----~--~~~vkI~DFGlar  676 (678)
                                   ..+.++|+|+++.|    +  ...+.|+||+.|.
T Consensus       176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~  222 (304)
T 3sg8_A          176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAA  222 (304)
T ss_dssp             HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCE
T ss_pred             HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCc
Confidence                         11357999999999    3  4567899999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.54  E-value=4.6e-05  Score=77.19  Aligned_cols=78  Identities=26%  Similarity=0.374  Sum_probs=61.1

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      ++++.|+|++|++++ ++ .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..+.++..++ 
T Consensus       106 ~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~-  178 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID-  178 (263)
T ss_dssp             SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEE-
T ss_pred             CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEe-
Confidence            578899999999987 33 689999999999999999874 4 688999999999999999976  5555555544443 


Q ss_pred             cccCCC
Q 038969          460 SVDGNP  465 (678)
Q Consensus       460 ~~~~n~  465 (678)
                       +.+|+
T Consensus       179 -l~~N~  183 (263)
T 1xeu_A          179 -LTGQK  183 (263)
T ss_dssp             -EEEEE
T ss_pred             -CCCCc
Confidence             44454

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.50  E-value=6.2e-05  Score=78.08  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      ++++.|+|++|.+++..+  +..+++|+.|+|++|++++ +|. +..+++|+.|+|++|++++
T Consensus       129 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence            344455555555443222  4444555555555555443 222 4444555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.48  E-value=6.2e-06  Score=90.68  Aligned_cols=63  Identities=14%  Similarity=-0.018  Sum_probs=31.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhh-------------hhhhccCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFL-------------RVLNLTGNNLEG  442 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L-------------~~L~ls~N~l~G  442 (678)
                      ..+++.|++++|++ |.||.+|++|++|++|+|++|+++|.+|..++++++|             +.|++++|+++|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            35788899999999 8999999999999999999999999999988877765             666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.48  E-value=5.3e-05  Score=78.60  Aligned_cols=79  Identities=19%  Similarity=0.327  Sum_probs=62.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|.+++. ++ +..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++..|  +..+.++..++
T Consensus       150 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  223 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence            56899999999999974 44 8999999999999999986544  7899999999999999997554  55555554443


Q ss_pred             ccccCCC
Q 038969          459 LSVDGNP  465 (678)
Q Consensus       459 l~~~~n~  465 (678)
                        +.+|+
T Consensus       224 --l~~N~  228 (308)
T 1h6u_A          224 --LTNQT  228 (308)
T ss_dssp             --EEEEE
T ss_pred             --ccCCe
Confidence              34443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.46  E-value=1.3e-05  Score=85.85  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=57.3

Q ss_pred             CCeEEEeeCCCCCCc----cccchhhhcCcCCCeeccCCCcCCCC----CChhhhh--hhhhhhhhccCCCCCC----CC
Q 038969          379 LPRIISLNLSSSGIS----GEIITYIFSLTSLQALDLSNNSLTGS----VPEFLSE--LHFLRVLNLTGNNLEG----SV  444 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~----G~ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~--l~~L~~L~ls~N~l~G----~i  444 (678)
                      .++++.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|+.|+|++|.+++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            357778888888886    66777788888888888888888776    5666633  7788888888888887    47


Q ss_pred             cccch-hhhcccccc
Q 038969          445 PAGLL-ERAKNGLLS  458 (678)
Q Consensus       445 P~~l~-~~~~~~~l~  458 (678)
                      |..+. .++.+..++
T Consensus       295 ~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHCTTCCEEE
T ss_pred             HHHHHhcCCCceEEE
Confidence            77663 345444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.45  E-value=3.9e-05  Score=81.42  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             eEEEeeCCCCCCccccchhhhcC-----cCCCeeccCCCcCCCCCChhhhhh-----hhhhhhhccCCCCCCCCcccchh
Q 038969          381 RIISLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLTGSVPEFLSEL-----HFLRVLNLTGNNLEGSVPAGLLE  450 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~ip~~~~~l-----~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~ls~N~l~G~iP~~l~~  450 (678)
                      +++.|+|++|++++..+..+..+     ++|+.|+|++|++++..+..+..+     ++|+.|+|++|++++..+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            78888999998888877777776     888999999999888888876665     78889999999888776665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.44  E-value=6.5e-05  Score=82.61  Aligned_cols=71  Identities=27%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNG  455 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~  455 (678)
                      +++++.|+|++|++++..|  +..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|+++|.+|  +..+..+.
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            3566677777777766554  56677777777777777654  356667777777777777776666  44444443

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.43  E-value=0.00063  Score=70.39  Aligned_cols=99  Identities=18%  Similarity=0.127  Sum_probs=65.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCC---CcccEEEEEE-cCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHK---NLTTLVGYCD-EDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~---NIv~l~g~~~-~~~~~~LV~Ey~~~  612 (678)
                      +.++.|....||+.     |..+++|+-..  ......+.+|...+  +.+.   .+.+.+.++. ..+..++||||++|
T Consensus        25 ~~l~~G~~n~v~~v-----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           25 ESLGEGFRNYAILV-----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEECSSEEEEEE-----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eecCCCcceeEEEE-----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            45778888899987     45688888532  23345677777763  4432   3667777775 45567899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                      ..|.+...  ..++..++..++.++++.|+ -||+
T Consensus        98 ~~l~~~~~--~~l~~~~~~~~~~~lg~~La-~LH~  129 (306)
T 3tdw_A           98 QILGEDGM--AVLPDDAKDRLALQLAEFMN-ELSA  129 (306)
T ss_dssp             EECHHHHH--TTSCHHHHHHHHHHHHHHHH-HHHH
T ss_pred             eECchhhh--hhCCHHHHHHHHHHHHHHHH-HHhc
Confidence            88876322  23455666666666666666 6664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.42  E-value=3.9e-05  Score=87.60  Aligned_cols=70  Identities=26%  Similarity=0.289  Sum_probs=62.2

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAK  453 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  453 (678)
                      +++++.|+|++|+|+ .||.   .+++|+.|+|++|+|+ .||..+.++++|+.|+|++|.|+|.+|..+..+..
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            468999999999998 5776   6789999999999999 89999999999999999999999999988776653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.42  E-value=0.00052  Score=69.18  Aligned_cols=100  Identities=15%  Similarity=0.071  Sum_probs=66.5

Q ss_pred             hcccCCce-EEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          540 VIGKGGFG-TVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       540 ~IG~G~fG-~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+..|..| .||+.....++..+.+|+-...   ...++.+|...+  + .+--+.++++++.+.+..++|||++++.++
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            34445554 6898776656778999987643   234566676652  2 344477899999999999999999999887


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                      .+....    .......++.++++.|. -||.
T Consensus       108 ~~~~~~----~~~~~~~~~~~l~~~L~-~Lh~  134 (272)
T 4gkh_A          108 FQVLEE----YPDSGENIVDALAVFLR-RLHS  134 (272)
T ss_dssp             HHHHHH----CGGGHHHHHHHHHHHHH-HHHT
T ss_pred             cccccC----CHHHHHHHHHHHHHHHH-HhcC
Confidence            765432    12233455666666666 6664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.40  E-value=2.9e-05  Score=87.71  Aligned_cols=69  Identities=16%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCC-------CeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSL-------QALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA  452 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L-------~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  452 (678)
                      ++++.|+|++|+|+ .||. +..  +|       +.|+|++|+|+ .||..+.++++|+.|+|++|.|+|.+|..+..+.
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            47888999999998 7777 654  67       99999999998 6899888899999999999999999998887764


Q ss_pred             c
Q 038969          453 K  453 (678)
Q Consensus       453 ~  453 (678)
                      .
T Consensus       255 ~  255 (571)
T 3cvr_A          255 A  255 (571)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.39  E-value=9.2e-05  Score=74.99  Aligned_cols=71  Identities=24%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      ++++.|+|++|++++ +|.. .. ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++ +| .+..+..+..+
T Consensus        85 ~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L  155 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL  155 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred             CCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence            344444444444443 2221 11 444555555555543 22 45666667777777777665 33 34444444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.39  E-value=3.5e-05  Score=80.48  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CeEEEeeCCCC-CCccc-cchhhhcCc-CCCeeccCCC--cCC-CCCChhhhhhhhhhhhhccCCC-CCCCCcccchhhh
Q 038969          380 PRIISLNLSSS-GISGE-IITYIFSLT-SLQALDLSNN--SLT-GSVPEFLSELHFLRVLNLTGNN-LEGSVPAGLLERA  452 (678)
Q Consensus       380 ~~l~~l~Ls~n-~l~G~-ip~~~~~l~-~L~~L~Ls~N--~l~-G~iP~~l~~l~~L~~L~ls~N~-l~G~iP~~l~~~~  452 (678)
                      ++++.|+|++| .+++. ++..+..++ +|+.|+|++|  .++ +.+|..+..+++|+.|+|++|. +++..+..+..+.
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            56777777777 77764 666677777 7888888777  566 5677777777778888888777 6666776766665


Q ss_pred             ccccccc
Q 038969          453 KNGLLSL  459 (678)
Q Consensus       453 ~~~~l~l  459 (678)
                      ++..+++
T Consensus       248 ~L~~L~l  254 (336)
T 2ast_B          248 YLQHLSL  254 (336)
T ss_dssp             TCCEEEC
T ss_pred             CCCEeeC
Confidence            5554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.37  E-value=3.4e-05  Score=82.57  Aligned_cols=71  Identities=23%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CCeEEEeeCCC---CCCccccchhh-------hcCcCCCeeccCCCcCCC----CCChhhhhhhhhhhhhccCCCCCCCC
Q 038969          379 LPRIISLNLSS---SGISGEIITYI-------FSLTSLQALDLSNNSLTG----SVPEFLSELHFLRVLNLTGNNLEGSV  444 (678)
Q Consensus       379 ~~~l~~l~Ls~---n~l~G~ip~~~-------~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~ls~N~l~G~i  444 (678)
                      .++++.|+|++   ++++|.+|..+       ..+++|+.|+|++|.+++    .+|..+..+++|+.|+|++|.+++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            46778888887   45667777665       677888888888888887    57778888888888888888886554


Q ss_pred             cccch
Q 038969          445 PAGLL  449 (678)
Q Consensus       445 P~~l~  449 (678)
                      +..+.
T Consensus       139 ~~~l~  143 (386)
T 2ca6_A          139 GAKIA  143 (386)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.36  E-value=7e-05  Score=78.57  Aligned_cols=61  Identities=28%  Similarity=0.349  Sum_probs=54.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      +++++.|+|++|.+++..|..+..+++|+.|+|++|.+++..|  +..+++|+.|++++|.++
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            5789999999999999999999999999999999999998777  889999999999999885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.35  E-value=8.7e-05  Score=81.56  Aligned_cols=44  Identities=32%  Similarity=0.262  Sum_probs=20.8

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhh
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSE  426 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  426 (678)
                      ++++.|+|++|+++| +|  ++.+++|+.|+|++|+++|..+..+.+
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence            344455555555554 33  444555555555555555443333333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.34  E-value=5.8e-05  Score=80.07  Aligned_cols=69  Identities=25%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcC-----cCCCeeccCCCcCCCCCChhhhhh-----hhhhhhhccCCCCCCCCcccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSL-----TSLQALDLSNNSLTGSVPEFLSEL-----HFLRVLNLTGNNLEGSVPAGL  448 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l-----~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~ls~N~l~G~iP~~l  448 (678)
                      +.++.|+|++|.+++..+..++.+     ++|+.|+|++|++++..+..+...     ++|+.|+|++|++++..+..+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            689999999999998888766654     899999999999998888777653     689999999999997555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.33  E-value=0.00011  Score=83.83  Aligned_cols=76  Identities=25%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .||..+..+.++..++
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            3679999999999997 67   56789999999999999 6887   5788999999999999 8999888887765444


Q ss_pred             ccccCCC
Q 038969          459 LSVDGNP  465 (678)
Q Consensus       459 l~~~~n~  465 (678)
                        +.+|+
T Consensus       291 --L~~N~  295 (622)
T 3g06_A          291 --LEGNP  295 (622)
T ss_dssp             --CCSCC
T ss_pred             --ecCCC
Confidence              45665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.33  E-value=0.00016  Score=79.53  Aligned_cols=66  Identities=23%  Similarity=0.167  Sum_probs=56.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchh
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLE  450 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  450 (678)
                      .+.++.|+|++|++++.   .++.+++|+.|+|++|+++| +|  ++.+++|+.|+|++|+|+|..+..+..
T Consensus       190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence            56888999999999875   48899999999999999998 77  889999999999999999865554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.31  E-value=0.00013  Score=80.15  Aligned_cols=61  Identities=31%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV  444 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i  444 (678)
                      ++++.|+|++|.+++..+  +..+++|+.|+|++|++++..|  ++.+++|+.|+|++|++++..
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence            344444444444443222  4444444444444444443322  344444444444444444433

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.02  E-value=0.0015  Score=69.98  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch-------hhHHHHHHHHHH--hc-CC-C-CcccEEEEEEcCCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-------QGYKQFQAEVQY--IV-HH-K-NLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-------~~~~~f~~Ev~~--~l-~H-~-NIv~l~g~~~~~~~~~LV  606 (678)
                      +.||.|..+.||++....+++.++||.......       .....+..|.+.  .+ ++ + .+.+++.+  +.+..++|
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv  113 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  113 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence            468999999999997653567899998653211       112233445444  22 21 3 34456644  34456899


Q ss_pred             EecCCCC
Q 038969          607 YEFMAKG  613 (678)
Q Consensus       607 ~Ey~~~G  613 (678)
                      |||+++.
T Consensus       114 mE~l~g~  120 (397)
T 2olc_A          114 MEDLSHL  120 (397)
T ss_dssp             ECCCTTS
T ss_pred             EEeCCCc
Confidence            9999764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.90  E-value=0.00011  Score=80.16  Aligned_cols=78  Identities=26%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             CeEEEeeCCCCCCccc----cchhhhcCcCCCeeccCCCcCCCCCChhhhh-----hhhhhhhhccCCCCCC----CCcc
Q 038969          380 PRIISLNLSSSGISGE----IITYIFSLTSLQALDLSNNSLTGSVPEFLSE-----LHFLRVLNLTGNNLEG----SVPA  446 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~ls~N~l~G----~iP~  446 (678)
                      ++++.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..     +++|+.|+|++|++++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3666677777776654    4555666677777777777766655555543     4567777777777765    5666


Q ss_pred             cchhhhccccc
Q 038969          447 GLLERAKNGLL  457 (678)
Q Consensus       447 ~l~~~~~~~~l  457 (678)
                      .+..+..+..+
T Consensus       393 ~l~~~~~L~~L  403 (461)
T 1z7x_W          393 TLLANHSLREL  403 (461)
T ss_dssp             HHHHCCCCCEE
T ss_pred             HHHhCCCccEE
Confidence            55555544433

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.88  E-value=0.001  Score=70.13  Aligned_cols=79  Identities=6%  Similarity=-0.028  Sum_probs=49.7

Q ss_pred             hhc-ccCCceEEEEEEEc--c----CCEEEEEEEeccCc---hhhHHHHHHHHHHh--c-CC--CCcccEEEEEEcC---
Q 038969          539 KVI-GKGGFGTVYHGYLE--F----NGTQVAVKMLSASS---VQGYKQFQAEVQYI--V-HH--KNLTTLVGYCDED---  600 (678)
Q Consensus       539 ~~I-G~G~fG~Vy~g~~~--~----~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l-~H--~NIv~l~g~~~~~---  600 (678)
                      +.| +.|....+|+....  .    ++..+++|+.....   ......+.+|+..+  + .+  -.+.++++++.+.   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            456 78888999988653  1    15688999865432   10113345555442  2 22  3577888887654   


Q ss_pred             CeeEEEEecCCCCCHHH
Q 038969          601 TNMGLIYEFMAKGNLEE  617 (678)
Q Consensus       601 ~~~~LV~Ey~~~GsL~~  617 (678)
                      +..++||||+++..+.+
T Consensus       106 g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             SSCEEEEECCCCBCCCB
T ss_pred             CCceEEEEecCCCChhh
Confidence            35689999999876653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.69  E-value=0.00024  Score=77.45  Aligned_cols=64  Identities=22%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             CeEEEeeCCCCCCccccchhhhc-----CcCCCeeccCCCcCCC----CCChhhhhhhhhhhhhccCCCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFS-----LTSLQALDLSNNSLTG----SVPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +.++.|+|++|.+++..+..+..     .++|+.|+|++|++++    .+|..+..+++|+.|+|++|++++.
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            68999999999999877776664     7799999999999997    8999999999999999999999865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.69  E-value=0.00029  Score=74.30  Aligned_cols=73  Identities=15%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CCCeEEEeeCCCCCCccccchh-hhcCcCCCe-eccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchh
Q 038969          378 ELPRIISLNLSSSGISGEIITY-IFSLTSLQA-LDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLE  450 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~-~~~l~~L~~-L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  450 (678)
                      .+++|+.|+|++|.+.+.||.. |.+|++|+. +.+++|++++..|..+..|++|+.|++++|++++..+..+..
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~  126 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH  126 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcc
Confidence            3578999999999999888864 788988874 677889999888999999999999999999999765544433

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.38  E-value=0.0079  Score=64.96  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEecc-------C-c-hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSA-------S-S-VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~-------~-~-~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      +.||.|..+.||+...  +++.++||....       . . ......++.|+...   ..+..+.+++.+.  .+..++|
T Consensus        40 ~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv  115 (420)
T 2pyw_A           40 KEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG  115 (420)
T ss_dssp             EECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred             EEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence            4688899999999953  567899994321       1 0 11334566665542   2234567777765  5667999


Q ss_pred             EecC-CC
Q 038969          607 YEFM-AK  612 (678)
Q Consensus       607 ~Ey~-~~  612 (678)
                      |||+ ++
T Consensus       116 ~e~l~~g  122 (420)
T 2pyw_A          116 MRYLEPP  122 (420)
T ss_dssp             ECCCCTT
T ss_pred             EeecCCc
Confidence            9999 76

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.27  E-value=0.00051  Score=73.27  Aligned_cols=63  Identities=22%  Similarity=0.239  Sum_probs=37.0

Q ss_pred             CeEEEeeCCCCCCcc----ccchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISG----EIITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G----~ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      +.++.|+|++|.++.    .++..+..+++|++|||++|+++..    ++..+..++.|+.|+|++|+++.
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            356666666666653    2344445566666666666666542    34445555666666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.10  E-value=0.004  Score=55.75  Aligned_cols=56  Identities=25%  Similarity=0.313  Sum_probs=42.4

Q ss_pred             EeeCCCCCCc-cccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          384 SLNLSSSGIS-GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       384 ~l~Ls~n~l~-G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      .++.++++|+ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677788886 46665432  46889999999999666667788888888888888775

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.00  E-value=0.029  Score=58.01  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH-h----cCCCCcccEE-E--EEEcCCeeEEEEecCC
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY-I----VHHKNLTTLV-G--YCDEDTNMGLIYEFMA  611 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~-~----l~H~NIv~l~-g--~~~~~~~~~LV~Ey~~  611 (678)
                      .|+.|..+.||+....  +..+++|+..... . ...++.++.. +    +..|.++... |  +....+..+++|||++
T Consensus        39 ~l~gG~~n~~~~v~~~--~~~~vlk~~~~~~-~-~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~  114 (346)
T 2q83_A           39 VIQGNQMALVWKVHTD--SGAVCLKRIHRPE-K-KALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIE  114 (346)
T ss_dssp             ECC----CEEEEEEET--TEEEEEEEECSCH-H-HHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCC
T ss_pred             eccccccCcEEEEEeC--CCCEEEEecCCCH-H-HHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeec
Confidence            4555678899998764  4469999987532 1 1122222222 1    2234443310 0  1123567899999999


Q ss_pred             CCCH
Q 038969          612 KGNL  615 (678)
Q Consensus       612 ~GsL  615 (678)
                      |..+
T Consensus       115 G~~~  118 (346)
T 2q83_A          115 GRPF  118 (346)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            8654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.91  E-value=0.00098  Score=75.11  Aligned_cols=57  Identities=12%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             CeEEEeeCCCCCCc----cccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          380 PRIISLNLSSSGIS----GEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~----G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      +.++.|+|+.|.++    +.++..+.++++|+.|+|++|.+.+ +|..+..+++|+.|+++.
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            45566666666665    3444445556666666666666654 556666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.83  E-value=0.0021  Score=68.47  Aligned_cols=69  Identities=22%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             CeEEEeeCCCCCCccc----cchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCCCCcccc
Q 038969          380 PRIISLNLSSSGISGE----IITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEGSVPAGL  448 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  448 (678)
                      +.++.|+|++|.++..    ++..+..+++|+.|+|++|+++..    ++..+...++|+.|+|++|.++..-...+
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            5799999999999853    466778889999999999999863    45556667899999999999986444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.81  E-value=0.0018  Score=72.98  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             CeEEEeeCCCCCCcc-ccchhhhcCcCCCeeccCCCcCCCC-CChhhhhhhhhhhhhccCCCCCCC
Q 038969          380 PRIISLNLSSSGISG-EIITYIFSLTSLQALDLSNNSLTGS-VPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G-~ip~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      ++++.|+|++|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++.
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            345556666666554 2344445556666666666665544 333344555666666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.80  E-value=0.0016  Score=62.13  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=29.6

Q ss_pred             eEEEeeCCCC-CCccc----cchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCC
Q 038969          381 RIISLNLSSS-GISGE----IITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       381 ~l~~l~Ls~n-~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      .++.|+|++| .+...    +...+...+.|++|+|++|+++..    +...+...+.|+.|+|++|+++
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            4555555555 55421    233344445555555555555432    2233333345555555555554

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.58  E-value=0.041  Score=55.83  Aligned_cols=71  Identities=20%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC-C--CCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH-H--KNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~-H--~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.+|.|..+.||+..+. +|+.|.||+-..........|.+|+..+  +. .  --+.+.+++.    ..++||||++.+
T Consensus        21 ~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l~~~   95 (288)
T 3f7w_A           21 AERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDER   95 (288)
T ss_dssp             EEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCC
T ss_pred             EecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEeeccc
Confidence            46789999999999987 8999999987654433334577777652  32 2  2345556542    247899999876


Q ss_pred             C
Q 038969          614 N  614 (678)
Q Consensus       614 s  614 (678)
                      .
T Consensus        96 ~   96 (288)
T 3f7w_A           96 P   96 (288)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.04  E-value=0.0041  Score=65.96  Aligned_cols=65  Identities=18%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhh---cCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCC
Q 038969          378 ELPRIISLNLSSSGISGEIITYIF---SLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~---~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      .+|+|+.|+|++|.+.+..+..+.   .+++|+.||||.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            357899999999999876655554   478999999999999874    56666778999999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.95  E-value=0.0028  Score=71.31  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             CeEEEeeCCCCCCccccchhhhc-CcCCCeeccCCCcCCCCCChhh-hhhhhhhhhhccCCCCCCCCcc
Q 038969          380 PRIISLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTGSVPEFL-SELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      ++++.|+|++ ++++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+.
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence            4677888866 677666666665 7888888888888877655555 5678888888888888654443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.69  E-value=0.0078  Score=57.16  Aligned_cols=64  Identities=16%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CeEEEeeCCCCCCccc----cchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhc--cCCCCCCC
Q 038969          380 PRIISLNLSSSGISGE----IITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNL--TGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~l--s~N~l~G~  443 (678)
                      +.++.|+|++|.+...    +...+...+.|++|+|++|+++..    +...+...+.|+.|+|  ++|.++..
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            5788999999999743    455566778999999999999864    5666777788999999  88998754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.38  E-value=0.0059  Score=68.62  Aligned_cols=59  Identities=25%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             eEEEeeCCCC-CCccc-cchhhhcCcCCCeeccCCCcCCCCCChhhh----hhhhhhhhhccCCC
Q 038969          381 RIISLNLSSS-GISGE-IITYIFSLTSLQALDLSNNSLTGSVPEFLS----ELHFLRVLNLTGNN  439 (678)
Q Consensus       381 ~l~~l~Ls~n-~l~G~-ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~----~l~~L~~L~ls~N~  439 (678)
                      +++.|+|+++ .++.. ++..+.++++|++|+|++|.+++..+..+.    .+++|+.|+|++|.
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            4555555554 33322 233333455555555555555444433333    23355555555554

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=93.72  E-value=0.071  Score=54.40  Aligned_cols=26  Identities=4%  Similarity=0.109  Sum_probs=22.2

Q ss_pred             CCccccCCCCCC---CCCcEEEEeeCCcc
Q 038969          651 PHICESSSSSNP---HKNIVKLITFSIIK  676 (678)
Q Consensus       651 ~~iiHrDlk~~N---~~~~vkI~DFGlar  676 (678)
                      +.++|+|+.+.|   .++.+.|+||..|.
T Consensus       173 ~~l~HgDl~~~Nil~~~~~~~lID~e~a~  201 (301)
T 3dxq_A          173 LAACHCDPLCENFLDTGERMWIVDWEYSG  201 (301)
T ss_dssp             CEEECSCCCGGGEEECSSCEEECCCTTCE
T ss_pred             ceeeccCCCcCCEEECCCCEEEEeccccc
Confidence            457999999999   77789999998764

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=93.14  E-value=0.32  Score=50.07  Aligned_cols=89  Identities=18%  Similarity=0.137  Sum_probs=65.9

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cC---CCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VH---HKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~---H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.|+.|....+|+...  ++..+++|+....   ....|.+|...+  +.   ...+.+.++++...+..++||||+++.
T Consensus        42 ~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~  116 (312)
T 3jr1_A           42 EKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS  116 (312)
T ss_dssp             EEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred             EEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence            4678899999999874  5678889987643   245677776552  32   356889999988888899999999987


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                      .+..              ..+.++++.|+ -||.
T Consensus       117 ~~~~--------------~~~~~lG~~LA-~LH~  135 (312)
T 3jr1_A          117 KNKQ--------------SSFTIFAEKIA-QLHQ  135 (312)
T ss_dssp             CCCT--------------THHHHHHHHHH-HHHH
T ss_pred             CCCc--------------hhHHHHHHHHH-HHHc
Confidence            5321              34567888888 8887

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=92.70  E-value=0.29  Score=50.52  Aligned_cols=27  Identities=15%  Similarity=0.011  Sum_probs=22.2

Q ss_pred             CCCccccCCCCCC---CC-----CcEEEEeeCCcc
Q 038969          650 CPHICESSSSSNP---HK-----NIVKLITFSIIK  676 (678)
Q Consensus       650 ~~~iiHrDlk~~N---~~-----~~vkI~DFGlar  676 (678)
                      .+.++|||+.+.|   ..     ..+.|+||+.|.
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~  216 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAK  216 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcC
Confidence            3578999999999   32     679999999764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=92.14  E-value=0.69  Score=47.20  Aligned_cols=132  Identities=8%  Similarity=0.006  Sum_probs=65.5

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcC-C-CCcccEEEE------EEcCCeeEEEEec
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVH-H-KNLTTLVGY------CDEDTNMGLIYEF  609 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~-H-~NIv~l~g~------~~~~~~~~LV~Ey  609 (678)
                      .|+.|....+|+.... +| .+++|+........  ++..|+..  .+. | -.+.+++..      ....+..++++||
T Consensus        29 ~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~~~~~--~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~  104 (322)
T 2ppq_A           29 GIAEGVENSNFLLHTT-KD-PLILTLYEKRVEKN--DLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISF  104 (322)
T ss_dssp             EECC---EEEEEEEES-SC-CEEEEEECC---CC--HHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEEC
T ss_pred             ccCCCcccceEEEEeC-Cc-cEEEEEeCCCCCHH--HHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEe
Confidence            4667878899998764 44 68899887521111  22223322  111 1 112222211      1224567899999


Q ss_pred             CCCCCHHH--------------hhc----CC-CC-------CCHHHHHHH------------HHHHHHHHHHhHhc----
Q 038969          610 MAKGNLEE--------------HLS----GA-NT-------LTWEARLRI------------ATEAAQGSHSAFDQ----  647 (678)
Q Consensus       610 ~~~GsL~~--------------~L~----~~-~~-------l~~~~~l~i------------a~~ia~gL~~yLH~----  647 (678)
                      ++|..+..              .++    .- ..       ..|.....-            ...+.+.++ .++.    
T Consensus       105 l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~-~l~~~~~~  183 (322)
T 2ppq_A          105 LEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEID-YLAAHWPK  183 (322)
T ss_dssp             CCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHH-HHHHHCCC
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHhhCcc
Confidence            98754311              011    10 00       124331111            012344455 5543    


Q ss_pred             CCCCCccccCCCCCC---CCCc-EEEEeeCCcc
Q 038969          648 GCCPHICESSSSSNP---HKNI-VKLITFSIIK  676 (678)
Q Consensus       648 ~~~~~iiHrDlk~~N---~~~~-vkI~DFGlar  676 (678)
                      .....++|+|+.+.|   .... +.|+||+.|.
T Consensus       184 ~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          184 DLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             SSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            123468999999999   4444 4799998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.79  E-value=0.15  Score=45.26  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             cccCCCCCC--------CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCC
Q 038969          369 GLNCSYDGN--------ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLT  417 (678)
Q Consensus       369 gv~C~~~~~--------~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~  417 (678)
                      -|.|+..+-        -+++++.|+|++|+|+..-+..|..|++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            367776431        1347999999999999644556889999999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=91.42  E-value=0.073  Score=55.05  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=43.0

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhh-hhhccCCCCCCCCc-ccchhhhcccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLR-VLNLTGNNLEGSVP-AGLLERAKNGL  456 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~-~L~ls~N~l~G~iP-~~l~~~~~~~~  456 (678)
                      ++++.|+|++|+++---+..|.++++|+.|+|++| ++-.-+..|..+++|+ .|+|++ +++ .|+ ..+..+.++..
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            35667777777766322334777777777777776 5544445566677776 777766 454 333 33444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=90.62  E-value=0.045  Score=51.50  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCc-CCCCCChhhhhh----hhhhhhhccCC-CCCCCCcccchhhhc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS-LTGSVPEFLSEL----HFLRVLNLTGN-NLEGSVPAGLLERAK  453 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~ls~N-~l~G~iP~~l~~~~~  453 (678)
                      .+|+.|||+++.++..--..+..+++|+.|+|+++. ++..-=..++.+    ++|+.|+|+++ ++|..-=..+..+.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999876544567899999999999984 775444445553    47999999986 465322223444444


Q ss_pred             ccccc
Q 038969          454 NGLLS  458 (678)
Q Consensus       454 ~~~l~  458 (678)
                      +..+.
T Consensus       141 L~~L~  145 (176)
T 3e4g_A          141 LKYLF  145 (176)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            44433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=90.31  E-value=0.12  Score=53.42  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCC-eeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcc-cchhhhcc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQ-ALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA-GLLERAKN  454 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~-~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~-~l~~~~~~  454 (678)
                      ..+++.|+|++| +.---+..|.++++|+ .|+|++ +++-.-+..|..|++|+.|+|++|+++ .|+. .+..+.++
T Consensus       249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L  323 (329)
T 3sb4_A          249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS  323 (329)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred             CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence            357899999998 6643344699999999 999999 787566788999999999999999998 4444 34444333

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=90.01  E-value=1.1  Score=45.70  Aligned_cols=72  Identities=13%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             hcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcC-C-CCcccEEEE-----EEcCCeeEEEEecC
Q 038969          540 VIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVH-H-KNLTTLVGY-----CDEDTNMGLIYEFM  610 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~-H-~NIv~l~g~-----~~~~~~~~LV~Ey~  610 (678)
                      .++ |....||+.... +|+.+++|....... ...++..|...  .++ + -.+++++..     ....+..+++|||+
T Consensus        33 ~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i  109 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDE-DRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV  109 (328)
T ss_dssp             EEC-CSSSEEEEECCT-TCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred             eec-CcccceEEEEcC-CCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence            355 677789988654 567899999864311 12233334433  121 1 123333332     12245668899999


Q ss_pred             CCCC
Q 038969          611 AKGN  614 (678)
Q Consensus       611 ~~Gs  614 (678)
                      ++..
T Consensus       110 ~G~~  113 (328)
T 1zyl_A          110 GGRQ  113 (328)
T ss_dssp             CCEE
T ss_pred             CCCC
Confidence            8754

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=88.96  E-value=0.58  Score=49.57  Aligned_cols=133  Identities=13%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             hhcccCCceEEEEEEEcc-------CCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEF-------NGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-------~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+..|....+|+.....       +++.+.+|+.... ......+.+|...+  + .+.-..++++++..    .+|||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e  130 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ  130 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence            346667778899987631       2468999986432 12344455665552  2 23223667766543    39999


Q ss_pred             cCCCCCHHH--------------h---hcCC-----CCCC--HHHHHHHHHHHHH-------------------HHH---
Q 038969          609 FMAKGNLEE--------------H---LSGA-----NTLT--WEARLRIATEAAQ-------------------GSH---  642 (678)
Q Consensus       609 y~~~GsL~~--------------~---L~~~-----~~l~--~~~~l~ia~~ia~-------------------gL~---  642 (678)
                      |+++..|..              .   ||..     +...  |.++.++..++.+                   .++   
T Consensus       131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  210 (379)
T 3feg_A          131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR  210 (379)
T ss_dssp             CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred             EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence            998755431              0   1111     1222  4555555544322                   122   


Q ss_pred             HhHhc-CCCCCccccCCCCCC----CC----CcEEEEeeCCcc
Q 038969          643 SAFDQ-GCCPHICESSSSSNP----HK----NIVKLITFSIIK  676 (678)
Q Consensus       643 ~yLH~-~~~~~iiHrDlk~~N----~~----~~vkI~DFGlar  676 (678)
                      ..|.. .....++|+|+.+.|    ++    +.+.|+||..|.
T Consensus       211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            12322 223468999999999    33    689999999875

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=88.33  E-value=0.84  Score=49.15  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=42.9

Q ss_pred             hhcccCCceEEEEEEEcc-------CCEEEEEEEeccCchhhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEF-------NGTQVAVKMLSASSVQGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-------~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.|+.|....+|+.....       ++..+.+|+......  ...+..|...  .+. +.-..++++.+..    .+|+|
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~--~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e  152 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE  152 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc--HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence            457788889999998641       246899998844211  1333455554  232 3224677776532    38999


Q ss_pred             cCCCCC
Q 038969          609 FMAKGN  614 (678)
Q Consensus       609 y~~~Gs  614 (678)
                      |+++.+
T Consensus       153 ~l~G~~  158 (429)
T 1nw1_A          153 YIPSRP  158 (429)
T ss_dssp             CCCEEE
T ss_pred             EeCCcc
Confidence            998633

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=88.26  E-value=0.079  Score=55.97  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             cCcCCCeeccCCCcCCCCCChhhh---hhhhhhhhhccCCCCCCC
Q 038969          402 SLTSLQALDLSNNSLTGSVPEFLS---ELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       402 ~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~ls~N~l~G~  443 (678)
                      .+++|+.|+|++|.++...+..+.   .+++|+.|+|+.|.+++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence            467888888888888766555554   377888888888888764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=88.16  E-value=0.49  Score=49.62  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             hhcccCCceEEEEEEEcc--------CCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCC-cccEEEEEEcCCeeEEEE
Q 038969          539 KVIGKGGFGTVYHGYLEF--------NGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKN-LTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~--------~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~N-Iv~l~g~~~~~~~~~LV~  607 (678)
                      +.++.|....+|+.....        .+..+++|+....... ..+...|...  .+...+ ..++++..  .  -++||
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~  113 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE  113 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence            356778888999988642        1267889887543211 1112334333  232222 44666543  2  36899


Q ss_pred             ecCCCCC
Q 038969          608 EFMAKGN  614 (678)
Q Consensus       608 Ey~~~Gs  614 (678)
                      ||+++..
T Consensus       114 e~i~G~~  120 (369)
T 3c5i_A          114 EWLYGDP  120 (369)
T ss_dssp             ECCCSEE
T ss_pred             EEecCCc
Confidence            9998754

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=87.92  E-value=2.2  Score=44.09  Aligned_cols=70  Identities=10%  Similarity=-0.006  Sum_probs=39.9

Q ss_pred             ccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh-cCCCCcccEEEE------EEcCCeeEEEEecCCCCC
Q 038969          542 GKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-VHHKNLTTLVGY------CDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       542 G~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~-l~H~NIv~l~g~------~~~~~~~~LV~Ey~~~Gs  614 (678)
                      |.|....||+.... +| .+++|+..........++.+.+... +.  .+++.+..      ....+..+++|||++|..
T Consensus        32 G~g~~N~vy~v~~~-~g-~~vLK~~~~~~~~~E~~~l~~L~~~g~~--~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~~  107 (339)
T 3i1a_A           32 GADTNAFAYQADSE-SK-SYFIKLKYGYHDEINLSIIRLLHDSGIK--EIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPN  107 (339)
T ss_dssp             TSCSSCEEEEEECS-SC-EEEEEEEECSSCCHHHHHHHHHHHTTCC--SSCCCCCCTTSCSSEECSSEEEEEEECCCCCB
T ss_pred             cCccccceEEEEeC-CC-CEEEEEecCccchHHHHHHHHHHhcCCc--ccccceecCCCCEEEEECCEEEEEEeccCCCc
Confidence            44446789999764 55 8999987664422222223222221 22  13343322      233567899999999875


Q ss_pred             H
Q 038969          615 L  615 (678)
Q Consensus       615 L  615 (678)
                      +
T Consensus       108 ~  108 (339)
T 3i1a_A          108 G  108 (339)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=83.96  E-value=3.9  Score=44.28  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCc-ccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNL-TTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NI-v~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.|+.|-...+|+......+..+++|+....... .....+|...  .+...++ .++++.+.  +  .+||||+++..|
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL  188 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence            4678888899999987522478999987543211 1111334433  3443333 57777762  2  359999987443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.96  E-value=0.43  Score=45.60  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             eEEEeeCCCC-CCcc----ccchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCC
Q 038969          381 RIISLNLSSS-GISG----EIITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       381 ~l~~l~Ls~n-~l~G----~ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      .++.|+|++| ++..    .|-..+..=+.|+.|+|++|++.-.    |-+.|..-+.|+.|+|+.|+++.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            4556666654 4432    1233344445666666666666522    22333334556666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	678
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-24
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-22
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-22
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-22
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-22
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-22
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-21
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-21
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-21
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-21
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-21
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-20
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-19
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-19
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	6e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-19
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-18
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-18
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-18
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-18
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	8e-18
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-17
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-17
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-17
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	9e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-17
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-16
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-16
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-15
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-15
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-15
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-14
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-14
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	8e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-10
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 19/164 (11%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF 577
           W L  ++              + IGKG FG V  G  ++ G +VAVK +   +    + F
Sbjct: 2   WALNMKEL----------KLLQTIGKGEFGDVMLG--DYRGNKVAVKCIKNDATA--QAF 47

Query: 578 QAEVQYI--VHHKNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLR 632
            AE   +  + H NL  L+G   +E   + ++ E+MAKG+L ++L   G + L  +  L+
Sbjct: 48  LAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLK 107

Query: 633 IATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
            + +  +                + +      N+ K+  F + K
Sbjct: 108 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 151

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.6 bits (240), Expect = 2e-22
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQYI--VHHKNLTTL 593
           + IG G FG VY      N   VA+K +S S  Q    ++    EV+++  + H N    
Sbjct: 21  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 80

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHI 653
            G    +    L+ E+      +        L       +   A QG             
Sbjct: 81  RGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 140

Query: 654 CESSSSSNPHKNIVKLITFSI 674
            ++ +       +VKL  F  
Sbjct: 141 VKAGNILLSEPGLVKLGDFGS 161

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.9 bits (238), Expect = 2e-22
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 15/159 (9%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF 577
           WE++    +           +  +G G +G VY G  +     VAVK L   +++  ++F
Sbjct: 12  WEMERTDIT----------MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 60

Query: 578 QAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRI 633
             E   +  + H NL  L+G C  +    +I EFM  GNL ++L       ++    L +
Sbjct: 61  LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 120

Query: 634 ATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITF 672
           AT+ +        +        + +      ++VK+  F
Sbjct: 121 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 159

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 2e-22
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTL 593
            F + IG G FG V+ GY   N  +VA+K +   +    + F  E + +  + H  L  L
Sbjct: 8   TFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQL 65

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGANTL-TWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C E   + L++EFM  G L ++L     L   E  L +  +  +G     +      
Sbjct: 66  YGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHR 125

Query: 653 ICESSSSSNPHKNIVKLI 670
              + +       ++K+ 
Sbjct: 126 DLAARNCLVGENQVIKVS 143

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 4e-22
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 5/144 (3%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTL 593
            F K +G G FG V +G        VA+KM+   S     +F  E + +  + H+ L  L
Sbjct: 7   TFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQL 64

Query: 594 VGYCDEDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPH 652
            G C +   + +I E+MA G L  +L    +    +  L +  +  +       +     
Sbjct: 65  YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 124

Query: 653 ICESSSSSNPHKNIVKLITFSIIK 676
              + +     + +VK+  F + +
Sbjct: 125 DLAARNCLVNDQGVVKVSDFGLSR 148

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 5e-22
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 534 TNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHHK 588
            ++FE    +G G  G V+    + +G  +A K++          Q   E+Q +   +  
Sbjct: 5   DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSP 64

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
            +    G    D  + +  E M  G+L++ L  A  +  +   +++    +G
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKG 116

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (234), Expect = 6e-22
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 525 FSYSDVAKITNNF-----------EKVIGKGGFGTVYHGYLEFNGTQ---VAVKML-SAS 569
           F++ D  +    F           E+VIG G FG V  G+L+  G +   VA+K L S  
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 570 SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEH-LSGANTLT 626
           + +  + F +E   +    H N+  L G   + T + +I EFM  G+L+          T
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 627 WEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
               + +    A G     D         + +       + K+  F + +
Sbjct: 127 VIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSR 176

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.7 bits (232), Expect = 7e-22
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 531 AKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG---YKQFQAEVQYI- 584
           + +++ +E  +++G GG   V+          VAVK+L A   +    Y +F+ E Q   
Sbjct: 3   SHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAA 62

Query: 585 -VHHKNLTTLVGYCDEDTNMG----LIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQ 639
            ++H  +  +    + +T  G    ++ E++    L + +     +T +  + +  +A Q
Sbjct: 63  ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQ 122

Query: 640 GSHSAFDQGCC 650
             + +   G  
Sbjct: 123 ALNFSHQNGII 133

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.6 bits (232), Expect = 2e-21
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 527 YSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQY 583
           +     I + ++   V+G G F  V     +     VA+K ++  +++G     + E+  
Sbjct: 1   WKQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAV 60

Query: 584 I--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGS 641
           +  + H N+  L    +   ++ LI + ++ G L + +      T     R+  +     
Sbjct: 61  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAV 120

Query: 642 HSAFDQGCCPHICESSSSSN---PHKNIVKLITFSIIK 676
               D G      +  +         + + +  F + K
Sbjct: 121 KYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK 158

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 93.6 bits (232), Expect = 3e-21
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 533 ITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHK 588
           + ++++  + +G G FG V+       G   A K +        +  + E+Q +  + H 
Sbjct: 24  VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHP 83

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQGSHSAFDQ 647
            L  L    ++D  M +IYEFM+ G L E +    N ++ +  +    +  +G     + 
Sbjct: 84  TLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN 143

Query: 648 GCCPHICESSSS---SNPHKNIVKLITFSIIK 676
               H+     +   +    N +KLI F +  
Sbjct: 144 NYV-HLDLKPENIMFTTKRSNELKLIDFGLTA 174

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 4e-21
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 538 EKVIGKGGFGTVYHGYLEFNGT--QVAVKMLSASSVQGY--KQFQAEVQYI--VHHKNLT 591
           +K +G G FGTV  GY +       VAVK+L   +       +  AE   +  + +  + 
Sbjct: 12  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 71

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCP 651
            ++G C+ ++ M L+ E    G L ++L     +  +  + +  + + G     +     
Sbjct: 72  RMIGICEAESWM-LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVH 130

Query: 652 HICESSSSSNPHKNIVKLITFSIIK 676
               + +     ++  K+  F + K
Sbjct: 131 RDLAARNVLLVTQHYAKISDFGLSK 155

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 93.2 bits (231), Expect = 4e-21
 Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 9/153 (5%)

Query: 532 KITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHH 587
            + + ++  + +G G FG V+    +  G     K ++          + E+  +  +HH
Sbjct: 26  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHH 85

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFD 646
             L  L    ++   M LI EF++ G L + ++  +  ++    +    +A +G     +
Sbjct: 86  PKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE 145

Query: 647 QGCCPH---ICESSSSSNPHKNIVKLITFSIIK 676
                H     E+        + VK+I F +  
Sbjct: 146 HSIV-HLDIKPENIMCETKKASSVKIIDFGLAT 177

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 8e-21
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYK 575
           WE+ + + +            + IG G FGTVY G        VAVKML  +A + Q  +
Sbjct: 3   WEIPDGQIT----------VGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQ 49

Query: 576 QFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANT-LTWEARLR 632
            F+ EV  +    H N+   +GY      + ++ ++    +L  HL    T       + 
Sbjct: 50  AFKNEVGVLRKTRHVNILLFMGYSTAP-QLAIVTQWCEGSSLYHHLHIIETKFEMIKLID 108

Query: 633 IATEAAQGSHSAFDQG 648
           IA + AQG      + 
Sbjct: 109 IARQTAQGMDYLHAKS 124

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 2e-20
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQF 577
           WE+                  + +G G FG V+ GY     T+VAVK L   S      F
Sbjct: 8   WEVPRETL----------KLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAF 55

Query: 578 QAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--SGANTLTWEARLRI 633
            AE   +  + H+ L  L     ++  + +I E+M  G+L + L       LT    L +
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 114

Query: 634 ATEAAQG 640
           A + A+G
Sbjct: 115 AAQIAEG 121

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 3e-20
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 523 RKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQA 579
           R+++  D         + +GKG FG VY    + +   +A+K+L  + +       Q + 
Sbjct: 1   RQWALEDF-----EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRR 55

Query: 580 EVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEA 637
           EV+    + H N+  L GY  + T + LI E+   G +   L   +    +      TE 
Sbjct: 56  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL 115

Query: 638 AQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIKN 677
           A        +       +  +        +K+  F    +
Sbjct: 116 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH 155

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 4e-20
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLS-ASSVQGYKQFQAEVQYI--VHHKN 589
            +++  + +G+G +G V           VAVK++    +V   +  + E+     ++H+N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC 649
           +    G+  E     L  E+ + G L + +     +      R   +   G       G 
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI 124

Query: 650 CPHICESSSSSNPHKNIVKLITFSIIK 676
                +  +     ++ +K+  F +  
Sbjct: 125 THRDIKPENLLLDERDNLKISDFGLAT 151

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 5e-20
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLV 594
               +G G FG VY    +      A K++   S +  + +  E+  +    H N+  L+
Sbjct: 16  IIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL 75

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHLSGAN-TLTWEARLRIATEAAQGSHSAFDQGCC 650
                + N+ ++ EF A G ++  +      LT      +  +     +   D    
Sbjct: 76  DAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKII 132

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 1e-19
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLS-ASSV 571
           WE+   K +            + +G+G FG VY G       +   T+VA+K ++ A+S+
Sbjct: 15  WEVAREKIT----------MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM 64

Query: 572 QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL---------- 619
           +   +F  E   +   +  ++  L+G   +     +I E M +G+L+ +L          
Sbjct: 65  RERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANN 124

Query: 620 SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
                 +    +++A E A G               + +        VK+  F + +
Sbjct: 125 PVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 181

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 1e-19
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI---VHHKNL 590
             K++GKG FG V+    +      A+K L    V      +    E + +     H  L
Sbjct: 6   LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL 65

Query: 591 TTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCC 650
           T +        N+  + E++  G+L  H+   +          A E   G      +G  
Sbjct: 66  THMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIV 125

Query: 651 PHICESSSSSNPHKNIVKLITFSIIKNN 678
               +  +        +K+  F + K N
Sbjct: 126 YRDLKLDNILLDKDGHIKIADFGMCKEN 153

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 2e-19
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQ--VAVKMLS-ASSVQGYKQFQAEVQY---IVHHKN 589
            F+ VIG+G FG V    ++ +G +   A+K +   +S   ++ F  E++    + HH N
Sbjct: 13  KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN 72

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEEHL----------------SGANTLTWEARLRI 633
           +  L+G C+    + L  E+   GNL + L                S A+TL+ +  L  
Sbjct: 73  IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF 132

Query: 634 ATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
           A + A+G      +        + +       + K+  F + +
Sbjct: 133 AADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 175

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 2e-19
 Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 37/150 (24%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQ 572
           WE    + S          F K +G G FG V                VAVKML  S+  
Sbjct: 18  WEFPRNRLS----------FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL 67

Query: 573 GYKQ-FQAEVQ---YIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL--------- 619
             ++   +E++   Y+ +H N+  L+G C       +I E+   G+L   L         
Sbjct: 68  TEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFIC 127

Query: 620 ---------SGANTLTWEARLRIATEAAQG 640
                         L  E  L  + + A+G
Sbjct: 128 SKTSPAIMEDDELALDLEDLLSFSYQVAKG 157

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 2e-19
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 16/165 (9%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQ--VAVKMLSASSVQG-Y 574
             LK      +D+          +G G FG+V  G       Q  VA+K+L   + +   
Sbjct: 3   LFLKRDNLLIADI---------ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADT 53

Query: 575 KQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGAN-TLTWEARL 631
           ++   E Q +  + +  +  L+G C +   + L+ E    G L + L G    +      
Sbjct: 54  EEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVA 112

Query: 632 RIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
            +  + + G     ++        + +    +++  K+  F + K
Sbjct: 113 ELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK 157

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 2e-19
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 18/154 (11%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLV 594
            ++ IGKG FG V+ G     G +VAVK+ S+   +     +AE+     + H+N+   +
Sbjct: 7   LQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFI 63

Query: 595 GYCDED----TNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG-----SHSAF 645
              ++D    T + L+ ++   G+L ++L+   T+T E  +++A   A G          
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR-YTVTVEGMIKLALSTASGLAHLHMEIVG 122

Query: 646 DQGCCPHICESSSSSN---PHKNIVKLITFSIIK 676
            QG          S N          +    +  
Sbjct: 123 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 6e-19
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTT 592
           F+  IG+G F TVY G       +VA   L    +     ++F+ E + +  + H N+  
Sbjct: 13  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR 72

Query: 593 LVGYC----DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG 648
                         + L+ E M  G L+ +L     +  +       +  +G      + 
Sbjct: 73  FYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT 132

Query: 649 C 649
            
Sbjct: 133 P 133

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 7e-19
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 5/162 (3%)

Query: 519 ELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ 576
           E+  +  S   V      +   + IG+G  GTVY       G +VA++ ++       + 
Sbjct: 4   EILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKEL 63

Query: 577 FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIA 634
              E+  +    + N+   +        + ++ E++A G+L + ++    +       + 
Sbjct: 64  IINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE-TCMDEGQIAAVC 122

Query: 635 TEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
            E  Q               +S +        VKL  F    
Sbjct: 123 RECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCA 164

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 8e-19
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-----YKQFQAEVQYI--VHHKNLT 591
             +G+G F TVY    +     VA+K +             +    E++ +  + H N+ 
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCP 651
            L+      +N+ L+++FM           +  LT            QG           
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILH 123

Query: 652 HICESSSSSNPHKNIVKLITFSIIK 676
              + ++       ++KL  F + K
Sbjct: 124 RDLKPNNLLLDENGVLKLADFGLAK 148

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 8e-19
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 519 ELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASSVQG-Y 574
            +++     S    +  +F +VIG+G FG VYHG L  N       AVK L+  +  G  
Sbjct: 16  AVQHVVIGPSS---LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV 72

Query: 575 KQFQAEVQYI--VHHKNLTTLVGYC-DEDTNMGLIYEFMAKGNLEEHLSGAN-TLTWEAR 630
            QF  E   +    H N+ +L+G C   + +  ++  +M  G+L   +       T +  
Sbjct: 73  SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL 132

Query: 631 LRIATEAAQGSHSAFDQGCC 650
           +    + A+G      +   
Sbjct: 133 IGFGLQVAKGMKFLASKKFV 152

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 2e-18
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 37/186 (19%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL-------EFNGTQVAVKMLSASS 570
           WEL   +              K +G+G FG V                T+VAVKML + +
Sbjct: 8   WELPRDRLV----------LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA 57

Query: 571 VQ-GYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL------- 619
            +       +E++ +     HKN+  L+G C +D  + +I E+ +KGNL E+L       
Sbjct: 58  TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPG 117

Query: 620 ---------SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLI 670
                    +    L+ +  +  A + A+G      + C      + +      N++K+ 
Sbjct: 118 LEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIA 177

Query: 671 TFSIIK 676
            F + +
Sbjct: 178 DFGLAR 183

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 3e-18
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 536 NFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKN 589
           ++E    IG G +G       + +G  +  K L   S+     +   +EV  +  + H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 590 LTTLVGYCDEDTN--MGLIYEFMAKGNLEEHLSGAN----TLTWEARLRIATEAAQGSHS 643
           +        + TN  + ++ E+   G+L   ++        L  E  LR+ T+       
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 644 AFDQGCCPH 652
              +    H
Sbjct: 125 CHRRSDGGH 133

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 4e-18
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL---EFNGTQVAVKMLSASSVQGY 574
           +E++  +              + IG+G FG V+ G     E     VA+K     +    
Sbjct: 2   YEIQRERI----------ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV 51

Query: 575 KQ-FQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEH-LSGANTLTWEAR 630
           ++ F  E   +    H ++  L+G   E+  + +I E    G L         +L   + 
Sbjct: 52  REKFLQEALTMRQFDHPHIVKLIGVITEN-PVWIIMELCTLGELRSFLQVRKYSLDLASL 110

Query: 631 LRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
           +  A + +        +        + +      + VKL  F + +
Sbjct: 111 ILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR 156

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 4e-18
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 10/149 (6%)

Query: 537 FEKVIGKGGFGTVYHGYLEF---NGTQVAVKMLS---ASSVQGYKQFQAEVQYI--VHHK 588
             + +G G FG V  G  +        VAVK L     S  +    F  EV  +  + H+
Sbjct: 12  LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 71

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEH-LSGANTLTWEARLRIATEAAQGSHSAFDQ 647
           NL  L G       M ++ E    G+L +               R A + A+G      +
Sbjct: 72  NLIRLYGVV-LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK 130

Query: 648 GCCPHICESSSSSNPHKNIVKLITFSIIK 676
                   + +     +++VK+  F +++
Sbjct: 131 RFIHRDLAARNLLLATRDLVKIGDFGLMR 159

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 5e-18
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 5/145 (3%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI--VHHKNLT 591
           F K++G+G F TV          + A+K+L    +           E   +  + H    
Sbjct: 12  FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFV 71

Query: 592 TLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCP 651
            L     +D  +     +   G L +++    +           E          +G   
Sbjct: 72  KLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIH 131

Query: 652 HICESSSSSNPHKNIVKLITFSIIK 676
              +  +        +++  F   K
Sbjct: 132 RDLKPENILLNEDMHIQITDFGTAK 156

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (206), Expect = 7e-18
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI----- 584
           N+F   ++IG+GGFG VY       G   A+K L    +   QG      E   +     
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSA 644
                +  +         +  I + M  G+L  HLS     +       A E   G    
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 645 FDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
            ++       + ++        V++    +  
Sbjct: 124 HNRFVVYRDLKPANILLDEHGHVRISDLGLAC 155

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 82.0 bits (202), Expect = 8e-18
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY---------KQFQAEVQY---I 584
            ++++G+G    V     +    + AVK++  +    +         +    EV     +
Sbjct: 7   PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV 66

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSA 644
             H N+  L    + +T   L+++ M KG L ++L+   TL+ +   +I     +   + 
Sbjct: 67  SGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICAL 126

Query: 645 FDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
                     +  +        +KL  F    
Sbjct: 127 HKLNIVHRDLKPENILLDDDMNIKLTDFGFSC 158

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 8e-18
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 533 ITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY-KQFQAEVQYI--VHH 587
           +   +     IG+G +G V   Y   N  +VA+K +S    Q Y ++   E++ +    H
Sbjct: 6   VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRH 65

Query: 588 KNLTTLVGYCDEDTNMGLIYEFM---AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSA 644
           +N+  +       T   +   ++     G     L     L+ +       +  +G    
Sbjct: 66  ENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYI 125

Query: 645 FDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
                     + S+        +K+  F + +
Sbjct: 126 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 157

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 1e-17
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 6/145 (4%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLV 594
             + +G+G FG V+      +      K +           + E+  +    H+N+  L 
Sbjct: 9   IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-QVLVKKEISILNIARHRNILHLH 67

Query: 595 GYCDEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHI 653
              +    + +I+EF++  ++ E + + A  L     +    +  +              
Sbjct: 68  ESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFD 127

Query: 654 CESSSS--SNPHKNIVKLITFSIIK 676
               +        + +K+I F   +
Sbjct: 128 IRPENIIYQTRRSSTIKIIEFGQAR 152

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 509 KQGGRKKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSA 568
           +  G  K +WE+                 E  +G+G FG V+ G      T+VA+K L  
Sbjct: 3   QTQGLAKDAWEIPRESLR----------LEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKP 51

Query: 569 SSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEE--HLSGANT 624
            +    + F  E Q +  + H+ L  L     E+  + ++ E+M+KG+L +         
Sbjct: 52  GT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKGETGKY 109

Query: 625 LTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
           L     + +A + A G               +++       + K+  F + +
Sbjct: 110 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR 161

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 3e-17
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 14/158 (8%)

Query: 533 ITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG------YKQFQAEVQYI 584
           + + ++  + +G G F  V     +  G Q A K +     +        +  + EV  +
Sbjct: 8   VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL 67

Query: 585 --VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSH 642
             + H N+ TL    +  T++ LI E +A G L + L+   +LT E       +   G +
Sbjct: 68  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 127

Query: 643 SAFDQGCCPHICESS----SSSNPHKNIVKLITFSIIK 676
                       +         N  K  +K+I F +  
Sbjct: 128 YLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 165

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 3e-17
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 32/136 (23%)

Query: 537 FEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQGY-KQFQAEVQYI---VHH 587
           F KV+G G FG V +             QVAVKML   +     +   +E++ +     H
Sbjct: 41  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH 100

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-----------------------SGANT 624
           +N+  L+G C     + LI+E+   G+L  +L                          N 
Sbjct: 101 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 160

Query: 625 LTWEARLRIATEAAQG 640
           LT+E  L  A + A+G
Sbjct: 161 LTFEDLLCFAYQVAKG 176

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.3 bits (197), Expect = 4e-17
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 34/176 (19%)

Query: 535 NNFE--KVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQGY-KQFQAEVQYI-- 584
           NN E  + IG+G FG V+             T VAVKML   +       FQ E   +  
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 72

Query: 585 VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL------------------------S 620
             + N+  L+G C     M L++E+MA G+L E L                         
Sbjct: 73  FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 132

Query: 621 GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
           G   L+   +L IA + A G     ++        + +       +VK+  F + +
Sbjct: 133 GPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSR 188

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 79.5 bits (195), Expect = 6e-17
 Identities = 21/156 (13%), Positives = 56/156 (35%), Gaps = 10/156 (6%)

Query: 529 DVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLS-ASSVQGYKQFQAEVQYIV 585
           +V  +  +++  + IG+G FG ++ G    N  QVA+K     S     +      + + 
Sbjct: 1   NV--VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLA 58

Query: 586 HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAF 645
               +  +  +  E  +  L+ + +     +         + +     A +      S  
Sbjct: 59  GCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH 118

Query: 646 DQG-----CCPHICESSSSSNPHKNIVKLITFSIIK 676
           ++        P        ++ + N++ ++ F ++K
Sbjct: 119 EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 154

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 9e-17
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQ----VAVKMLSASSVQGY-KQFQAEVQYI--VHHK 588
             +KVIG G FG VY G L+ +  +    VA+K L A   +     F  E   +    H 
Sbjct: 10  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHH 69

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKG-NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQ 647
           N+  L G   +   M +I E+M  G   +         +    + +    A G     + 
Sbjct: 70  NIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM 129

Query: 648 GCC 650
              
Sbjct: 130 NYV 132

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 9e-17
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGY------KQFQAEVQYIVH---- 586
              ++G GGFG+VY G    +   VA+K +    +  +       +   EV  +      
Sbjct: 8   VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG 67

Query: 587 HKNLTTLVGYCDEDTNMGLIYEFMA-KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAF 645
              +  L+ + +   +  LI E      +L + ++    L  E       +  +      
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127

Query: 646 DQGCCPH-ICESSSSSNPHKNIVKLITFSI 674
           + G     I + +   + ++  +KLI F  
Sbjct: 128 NCGVLHRDIKDENILIDLNRGELKLIDFGS 157

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 3e-16
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 36/185 (19%)

Query: 518 WELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYL-----EFNGTQVAVKMLSASSVQ 572
           WE    +              K +G+G FG V                VAVKML   +  
Sbjct: 8   WEFPRDRLK----------LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH 57

Query: 573 G-YKQFQAEVQYI---VHHKNLTTLVGYCDEDTN-MGLIYEFMAKGNLEEHLSG------ 621
             ++   +E++ +    HH N+  L+G C +    + +I EF   GNL  +L        
Sbjct: 58  SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 117

Query: 622 ----------ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKNIVKLIT 671
                      + LT E  +  + + A+G      + C      + +     KN+VK+  
Sbjct: 118 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 177

Query: 672 FSIIK 676
           F + +
Sbjct: 178 FGLAR 182

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 5e-16
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 8/153 (5%)

Query: 532 KIT-NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---QGYKQFQAEVQYI- 584
           K+T N+F+  K++GKG FG V     +  G   A+K+L    +           E + + 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60

Query: 585 -VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHS 643
              H  LT L         +  + E+   G L  HLS     T E       E       
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEY 120

Query: 644 AFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
              +       +  +        +K+  F + K
Sbjct: 121 LHSRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 76.5 bits (187), Expect = 6e-16
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 7/149 (4%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSVQGYKQFQAEVQYI--VHHK 588
             +   + IG+G +G VY       G   A+K +               E+  +  + H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG 648
           N+  L         + L++E + +   +        L          +   G     D+ 
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 649 CCPHICESSSSSNPHKNIVKLITFSIIKN 677
                 +  +     +  +K+  F + + 
Sbjct: 121 VLHRDLKPQNLLINREGELKIADFGLARA 149

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 7e-16
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 536 NFEKVIGKGGFGTVYHGYLEFNGTQ----VAVKMLS-ASSVQGYKQFQAEVQYI--VHHK 588
              KV+G G FGTVY G     G +    VA+K L  A+S +  K+   E   +  V + 
Sbjct: 12  KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNP 71

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNL-EEHLSGANTLTWEARLRIATEAAQGSHSAFDQ 647
           ++  L+G C   T   LI + M  G L +      + +  +  L    + A+G +   D+
Sbjct: 72  HVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR 130

Query: 648 GCCPHICESSSSSNPHKNIVKLITFSIIK 676
                   + +        VK+  F + K
Sbjct: 131 RLVHRDLAARNVLVKTPQHVKITDFGLAK 159

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 532 KITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ---YIVH 586
           ++ N +   + IG G FG +Y G     G +VA+K+    +     Q   E +    +  
Sbjct: 4   RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQG 61

Query: 587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFD 646
              + T+     E     ++ E +     +     +   + +  L +A +          
Sbjct: 62  GVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS 121

Query: 647 QGCC 650
           +   
Sbjct: 122 KNFI 125

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 3e-15
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 532 KITNNFE---KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IV 585
            I ++++   +V+G G  G V   + +    + A+KML         + + EV+      
Sbjct: 8   AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRAS 62

Query: 586 HHKNLTTLVGYCD----EDTNMGLIYEFMAKGNLEEHLS--GANTLTWEARLRIATEAAQ 639
              ++  +V   +        + ++ E +  G L   +   G    T      I     +
Sbjct: 63  QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGE 122

Query: 640 GSHSAFDQGCCPHICESSS---SSNPHKNIVKLITFSIIK 676
                          +  +   +S     I+KL  F   K
Sbjct: 123 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 162

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 5e-15
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 516 GSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYK 575
           G    + ++ SY+D         KVIG G FG VY   L  +G  VA+K +        +
Sbjct: 11  GQGPDRPQEVSYTDT--------KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----R 58

Query: 576 QFQAEVQYI--VHHKNLTTLVGYC------DEDTNMGLIYEFMAKGNLEEHLSGAN---T 624
               E+Q +  + H N+  L  +        ++  + L+ +++ +         +    T
Sbjct: 59  FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT 118

Query: 625 LTWEARLRIATEAAQGSHSAFDQGCCPH--ICESSSSSNPHKNIVKLITFSIIK 676
           L          +  +        G C H  I   +   +P   ++KL  F   K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGIC-HRDIKPQNLLLDPDTAVLKLCDFGSAK 171

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 1e-14
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 535 NNFE--KVIGKGGFGTVY---HGYLEFNGTQVAVKMLSASSV----QGYKQFQAEVQ--- 582
            NFE  KV+G G +G V+          G   A+K+L  +++    +  +  + E Q   
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 583 YIVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSH 642
           +I     L TL      +T + LI +++  G L  HLS     T         E      
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE 143

Query: 643 SAFDQGCCPHICESSSSSNPHKNIVKLITFSI 674
                G      +  +        V L  F +
Sbjct: 144 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGL 175

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 14/156 (8%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI--VHHK 588
           + +E    IG+G FG V+       G +VA+K +   + +         E++ +  + H+
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 589 NLTTLVGYCDEDT--------NMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
           N+  L+  C            ++ L+++F          +     T     R+      G
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNG 129

Query: 641 SHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
            +            ++++       ++KL  F + +
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 165

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 2e-14
 Identities = 24/169 (14%), Positives = 65/169 (38%), Gaps = 12/169 (7%)

Query: 513 RKKGSWELKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS 570
           R +  W+ ++    + +     ++++  + +G+G +  V+      N  +V VK+L    
Sbjct: 17  RPREYWDYESHVVEWGNQ----DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK 72

Query: 571 VQGYKQFQAEVQYIVHHKNLTTLVGYCDEDTN--MGLIYEFMAKGNLEEHLSGANTLTWE 628
            +  K+    ++ +    N+ TL     +  +    L++E +   + ++      TLT  
Sbjct: 73  KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY---QTLTDY 129

Query: 629 ARLRIATEAAQGSHSAFDQGCCPHICESSSSSNPHKN-IVKLITFSIIK 676
                  E  +        G      +  +    H++  ++LI + + +
Sbjct: 130 DIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE 178

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 514 KKGSWELKNRKFSYSDVAKITNNFEKVIGKGGFGTVYHGYLEFNGTQVAVKML--SASSV 571
            K +WE++     Y D+        + +G G +G V        G +VA+K L     S 
Sbjct: 10  TKTAWEVRAV---YRDL--------QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE 58

Query: 572 QGYKQFQAEVQYI--VHHKNLTTLVGYCDED------TNMGLIYEFMAKGNLEEHLSGAN 623
              K+   E++ +  + H+N+  L+     D      T+  L+  FM  G     L    
Sbjct: 59  LFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMKHE 116

Query: 624 TLTWEARLRIATEAAQGSHSAFDQGCC 650
            L  +    +  +  +G       G  
Sbjct: 117 KLGEDRIQFLVYQMLKGLRYIHAAGII 143

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (176), Expect = 2e-14
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQ---FQAEVQYI--VHH 587
            +F+  + +G G FG V+      NG   A+K+L    V   KQ      E   +  V H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 588 KNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQ 647
             +  + G   +   + +I +++  G L   L  +           A E          +
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK 123

Query: 648 G 648
            
Sbjct: 124 D 124

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.0 bits (173), Expect = 8e-14
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 520 LKNRKFSYSDVAKITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLS---ASSVQGY 574
           LK  +    + A++ + F+  K +G G FG V     + +G   A+K+L       ++  
Sbjct: 27  LKKWETPSQNTAQL-DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQI 85

Query: 575 KQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLR 632
           +    E + +  V+   L  L     +++N+ ++ E++A G +  HL      +      
Sbjct: 86  EHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARF 145

Query: 633 IATEAAQGSHSAFDQGCC 650
            A +              
Sbjct: 146 YAAQIVLTFEYLHSLDLI 163

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 10/153 (6%)

Query: 532 KITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--V 585
           ++   ++    +G G +G+V   +    G +VAVK LS    S+   K+   E++ +  +
Sbjct: 15  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM 74

Query: 586 HHKNLTTLVGYCDEDTNMG----LIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGS 641
            H+N+  L+       ++     +       G    ++     LT +    +  +  +G 
Sbjct: 75  KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGL 134

Query: 642 HSAFDQGCCPHICESSSSSNPHKNIVKLITFSI 674
                        + S+ +      +K++ F +
Sbjct: 135 KYIHSADIIHRDLKPSNLAVNEDCELKILDFGL 167

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-13
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 535 NNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHK 588
             +E  + IG+G +GTV+          VA+K +               E+  +  + HK
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 589 NLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQG 648
           N+  L      D  + L++EF  +   +   S    L  E       +  +G      + 
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121

Query: 649 CCPHICESSSSSNPHKNIVKLITFSIIK 676
                 +  +        +KL  F + +
Sbjct: 122 VLHRDLKPQNLLINRNGELKLANFGLAR 149

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 3e-13
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 536 NFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKN 589
           NF+  + IG+G +G VY    +  G  VA+K +   +           E+  +  ++H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 590 LTTLVGYCDEDTNMGLIYEFMAKGNLEE-HLSGANTLTWEARLRIATEAAQGSHSAFDQ 647
           +  L+     +  + L++EF+ +   +    S    +          +  QG       
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH 121

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 15/156 (9%)

Query: 533 ITNNFE--KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VH 586
           +   ++  K IG G  G V   Y       VA+K LS         K+   E+  +  V+
Sbjct: 15  VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN 74

Query: 587 HKNLTTLVGYC------DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQG 640
           HKN+ +L+         +E  ++ L+ E M     +        L  E    +  +   G
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLYQMLCG 131

Query: 641 SHSAFDQGCCPHICESSSSSNPHKNIVKLITFSIIK 676
                  G      + S+        +K++ F + +
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-10
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 532 KITNNFE--KVIGKGGFGTVYHGY-LEFNGTQVAVKMLSASSVQG--YKQFQAEVQYI-- 584
           +    +E    IG+G +G V+    L+  G  VA+K +   + +         EV  +  
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 585 ---VHHKNLTTLVGYC-----DEDTNMGLIYEFMAKGNLEEHL-SGANTLTWEARLRIAT 635
                H N+  L   C     D +T + L++E + +             +  E    +  
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 636 EAAQG 640
           +  +G
Sbjct: 124 QLLRG 128

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 6e-10
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 410 DLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA-GLLERAKNGLLSLSVDGNPKLC 468
           DL NN + G++P+ L++L FL  LN++ NNL G +P  G L+R        +   N  LC
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR----FDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 354 NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSN 413
               +     +                 +  L+L ++ I G +   +  L  L +L++S 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 414 NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVP 445
           N+L G +P+    L    V     N      P
Sbjct: 278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 35/114 (30%)

Query: 333 LTSQQDVDAIMSIKKKYG---VKKNWQ--GDPCAPKVYLWQGLNCSYDGNELPRIISLNL 387
           L + QD  A++ IKK  G      +W    D C      W G+ C  D            
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT---WLGVLCDTDTQ---------- 48

Query: 388 SSSGISGEIITYIFSLTSLQALDLSNNSLTG--SVPEFLSELHFLRVLNLTGNN 439
                             +  LDLS  +L     +P  L+ L +L  L + G N
Sbjct: 49  ---------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 343 MSIKKKYGVKKNWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFS 402
           +   +   +                  L      + L  +  L L  + IS      + S
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSS 327

Query: 403 LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVD 462
           LT LQ L  +NN ++      L+ L  +  L+   N +    P   L R    +  L ++
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR----ITQLGLN 381

Query: 463 GN 464
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 18/143 (12%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 303 DFSINKTENSTLPPILNAEEIYLAKEFPSSLTSQQDVDAIMSIKKKYGVKKNWQGDPCAP 362
           D  +   + S L P+    ++   K   + +++   +  + ++      +   +      
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 363 KVYLWQGLNCSYDG-------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNS 415
            +     L   ++        + L ++  L  +++ +S   ++ + +LT++  L   +N 
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 416 LTGSVPEFLSELHFLRVLNLTGN 438
           ++   P  L+ L  +  L L   
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           +L ++ +L     GI    I  +  L +L  ++ SNN LT   P  L  L  L  + 
Sbjct: 42  DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN 438
           L   +   L  + ++  +      L  +  L      +     + +  L+ L  +N + N
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 439 NLEGSVPAGLLER 451
            L    P   L +
Sbjct: 77  QLTDITPLKNLTK 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 384 SLNLSSSGISGEIITYIFS-LTSLQALDLSNNSLTG----SVPEFLSELHFLRVLNLTGN 438
           SL++    +S      +   L   Q + L +  LT      +   L     L  LNL  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 439 NLEGSVPAGLLERAKNGLLSL 459
            L       +L+  +     +
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 384 SLNLSSSGISGEIITYIFS----LTSLQALDLSNNSLTGSVPEFLSE-----LHFLRVLN 434
            L L+   +S    + + +      SL+ LDLSNN L  +    L E        L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 435 LTGNNLEGSVPAGL--LERAKNGLLSLS 460
           L        +   L  LE+ K  L  +S
Sbjct: 433 LYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS----LTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
           L +   + L   G++      I S      +L  L+L +N L       + +        
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 435 LTGNNLEG 442
           +   +L+ 
Sbjct: 86  IQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 390 SGISGEIITYIFSLTSLQALDLSNNSLTG----SVPEFLSELHFLRVLNLTGNNLEGSVP 445
           +G+           + L+ L L++  ++     S+   L   H LR L+L+ N L  +  
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 446 AGLLERAKNGLLSLSV 461
             L+E  +     L  
Sbjct: 415 LQLVESVRQPGCLLEQ 430

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 405 SLQALDLSNNSLTGS-VPEFLSELHFLRVLNLTGNNLEGSVPAGLLE--RAKNGLLSLSV 461
            +Q+LD+    L+ +   E L  L   +V+ L    L  +    +    R    L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 462 DGN 464
             N
Sbjct: 63  RSN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 379 LPRIISLNLSSSGISGEIITYIFS-----LTSLQALDLSNNSLTGSVPEFLSEL 427
              +  L+LS++ +    I  +          L+ L L +   +  + + L  L
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQ-------------Y 583
             + +G G F TV+      N T VA+K++    V   +  + E++              
Sbjct: 17  LVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT-EAAEDEIKLLQRVNDADNTKED 75

Query: 584 IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHL-----SGANTLTWEARLRIATEAA 638
            +   ++  L+ + +     G+    + +   E  L          +      +I+ +  
Sbjct: 76  SMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLL 135

Query: 639 QGSHSAFDQGCCPH 652
            G      +    H
Sbjct: 136 LGLDYMHRRCGIIH 149

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 366 LWQGL---NCSYDGNELPRIISLNLSSSGISGEIITYI----FSLTSLQALDLSNNSLTG 418
           LWQ L     +   +   R++S  + +       +       FS   +Q +DLSN+ +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 419 -SVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH 469
            ++   LS+   L+ L+L G  L   +   L + +   L+ L++ G      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN--LVRLNLSGCSGFSE 110

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 367 WQGLNCSYDG-NELPRIIS-----LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSV 420
            + + CS  G  ++P+ +      L+L ++ I+        +L +L  L L NN ++   
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71

Query: 421 PEFLSELHFLRVLNLTGNNLEG 442
           P   + L  L  L L+ N L+ 
Sbjct: 72  PGAFAPLVKLERLYLSKNQLKE 93

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 13/71 (18%)

Query: 539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV----------QGYKQFQAEVQ--YIVH 586
           K++G+G    V++ Y E    +  VK                  G   F           
Sbjct: 6   KLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNE 64

Query: 587 HKNLTTLVGYC 597
            + L  L G  
Sbjct: 65  FRALQKLQGLA 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 354 NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSN 413
                P                 +  P +  LN+S++ +             L+ L  S 
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASF 313

Query: 414 NSLTGSVPEFLSELHFLRVLNLTGNNLEG 442
           N L   VPE    L   + L++  N L  
Sbjct: 314 NHLA-EVPELPQNL---KQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 354 NWQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSN 413
           N+  D       L          + L  +       +  S EI +      SL+ L++SN
Sbjct: 234 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 293

Query: 414 NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNP 465
           N L   +P        L  L  + N+L   VP          L  L V+ NP
Sbjct: 294 NKLI-ELPALPPR---LERLIASFNHLA-EVPELP-----QNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLN 434
             PR+  L  S + ++           +L+ L +  N L    P+    +  LR+ +
Sbjct: 302 LPPRLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 33/134 (24%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLS------------------- 425
           L+L+   ++  ++ ++  L  +  LDLS+N L    P   +                   
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 426 --ELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCHTASCNKRQNNKYIV 483
              L  L+ L L  N L+ S     L      L+ L++ GN  LC        Q      
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNS-LC--------QEEGIQE 110

Query: 484 PVAASVVSLSVLLT 497
            +A  + S+S +LT
Sbjct: 111 RLAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 407 QALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA 446
           + L L++  LT  V   L +L  +  L+L+ N L    PA
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA 38

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 394 GEIITYIFS-LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE 441
            E+   +F   +    LD+S   +       L  L  LR  +    NL+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 11/98 (11%)

Query: 355 WQGDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISGEIITYIF------SLTSLQA 408
              D              +      P +  L L+   +S      +           LQ 
Sbjct: 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 277

Query: 409 LDLSNNSLTGSVPEFLSELHF-----LRVLNLTGNNLE 441
           L L  N +       L  +       L  L L GN   
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 385 LNLSSSGISGEIITYIFSLTSLQALDLSNNSLTG----SVPEFLSELHFLRVLNLTGNNL 440
             +++      +   +    S++ + LS N++       + E ++    L +   +    
Sbjct: 13  DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 377 NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +++   + +N     ++  +   +        L LS N L       L     L  LNL 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 437 GNN 439
              
Sbjct: 64  RAE 66

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 397 ITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           I+ + SL +L  + L NN ++   P  L+    L ++ LT
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 392 ISGEIITYIFS---LTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNL 440
           ++ E+I            + LDL    +   +    + L     ++ + N +
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 379 LPRIISLNLSSSGISG--EIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT 436
           +P ++SLNLS++ +    ++ + +    +L+ L+LS N L         +   L  L L 
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123

Query: 437 GNNLEGSVP 445
           GN+L  +  
Sbjct: 124 GNSLSDTFR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	678
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.95
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.94
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.94
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.94
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.94
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.94
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.94
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.94
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.93
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.93
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.93
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.93
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.93
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.93
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.93
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.93
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.93
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.93
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.92
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.92
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.92
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.92
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.92
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.92
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.92
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.92
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.92
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.91
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.91
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.91
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.91
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.91
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.91
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.91
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.9
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.9
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.9
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.9
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.9
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.9
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.9
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.9
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.89
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.89
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.88
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.88
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.87
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.87
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.86
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.86
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.85
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.85
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.85
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.85
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.85
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.84
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.83
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.72
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.69
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.55
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.17
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.02
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.53
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.0
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.93
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.6
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.08
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	95.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	90.7
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	90.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.11
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	85.7
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	85.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.59

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.3e-28  Score=253.55  Aligned_cols=149  Identities=24%  Similarity=0.412  Sum_probs=127.1

Q ss_pred             cccHhhHHHHHhhhh-----------hhcccCCceEEEEEEEccCCE---EEEEEEeccC-chhhHHHHHHHHHHh--cC
Q 038969          524 KFSYSDVAKITNNFE-----------KVIGKGGFGTVYHGYLEFNGT---QVAVKMLSAS-SVQGYKQFQAEVQYI--VH  586 (678)
Q Consensus       524 ~fs~~el~~~t~~f~-----------~~IG~G~fG~Vy~g~~~~~g~---~VAVK~l~~~-~~~~~~~f~~Ev~~~--l~  586 (678)
                      .++|+|+.+++.+|.           ++||+|+||.||+|+++.+|+   .||||.+... .....++|.+|+.++  ++
T Consensus         6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   85 (299)
T d1jpaa_           6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD   85 (299)
T ss_dssp             GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence            467888888887773           579999999999999865543   6999998764 444567899999884  89


Q ss_pred             CCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          587 HKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       587 H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      |||||+++|+|...+..+||||||++|+|.+++... ..++|.++++|+.|||+||+ |||+   .+||||||||+|   
T Consensus        86 HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~-yLH~---~~iiHrDlKp~NILl  161 (299)
T d1jpaa_          86 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMK-YLAD---MNYVHRDLAARNILV  161 (299)
T ss_dssp             CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEE
T ss_pred             CCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHH-HHhh---CCCccCccccceEEE
Confidence            999999999999999999999999999999998864 57999999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       .++.+||+|||+|+
T Consensus       162 ~~~~~~Kl~DFGla~  176 (299)
T d1jpaa_         162 NSNLVCKVSDFGLSR  176 (299)
T ss_dssp             CTTCCEEECCC----
T ss_pred             CCCCcEEECCcccce
Confidence             78899999999997

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.9e-28  Score=250.36  Aligned_cols=136  Identities=24%  Similarity=0.414  Sum_probs=123.7

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|.+..+|+.||||+++... ...++|.+|+.+  .++|||||+++|+|.+++..+||||||++|+
T Consensus        21 ~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~   99 (287)
T d1opja_          21 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGN   99 (287)
T ss_dssp             EEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred             EeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcc
Confidence            3578999999999999998789999999997653 346789999988  4999999999999999999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++...  ..++|..++.|+.|||+||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus       100 l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~-yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~  164 (287)
T d1opja_         100 LLDYLRECNRQEVSAVVLLYMATQISSAME-YLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRL  164 (287)
T ss_dssp             HHHHHHHSCTTTSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTT
T ss_pred             hHHHhhhccccchHHHHHHHHHHHHHHHHH-HHHH---CCcccCccccCeEEECCCCcEEEccccceee
Confidence            99999643  67999999999999999999 9999   899999999999    778999999999973

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2e-27  Score=242.68  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++.... ...++|.+|+.++  ++|||||++++++.+.+..+||||||++|+
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~   89 (271)
T d1nvra_          10 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   89 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCc
Confidence            4789999999999999987899999999976532 3345788998884  999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.++|.....+++.++..++.|+++||+ |||+   .+||||||||+|    +++.+||+|||+|+
T Consensus        90 L~~~l~~~~~l~e~~~~~i~~qi~~al~-ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~  151 (271)
T d1nvra_          90 LFDRIEPDIGMPEPDAQRFFHQLMAGVV-YLHG---IGITHRDIKPENLLLDERDNLKISDFGLAT  151 (271)
T ss_dssp             GGGGSBTTTBCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---cCCccCcccHHHEEECCCCCEEEccchhhe
Confidence            9999988788999999999999999999 9999   899999999999    77899999999997

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-27  Score=241.62  Aligned_cols=135  Identities=24%  Similarity=0.449  Sum_probs=119.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|++. +++.||||+++... ...++|.+|+..  .++|||||+++|+|...+..+||||||++|+
T Consensus         9 ~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~   86 (263)
T d1sm2a_           9 FVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGC   86 (263)
T ss_dssp             EEEEEECCSSCCEEEEEET-TTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred             EEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCc
Confidence            3578999999999999987 78899999997643 345789999988  4999999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++... ..++|..+++|+.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus        87 L~~~l~~~~~~~~~~~~~~i~~qia~gl~-~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          87 LSDYLRTQRGLFAAETLLGMCLDVCEGMA-YLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             HHHHHHTTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             HHHHhhccccCCCHHHHHHHHHHHHHHHH-hhhc---cceeecccchhheeecCCCCeEecccchhee
Confidence            99998765 67899999999999999999 9999   899999999999    778999999999873

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-27  Score=239.27  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=123.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+.+.+|+.||||++....   ....+++.+|+.+  .++|||||++++++.+++..+||||||++
T Consensus        11 ~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~   90 (263)
T d2j4za1          11 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPL   90 (263)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCC
Confidence            478999999999999998789999999986532   2335678889887  48999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|+++||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus        91 g~L~~~l~~~~~l~e~~~~~i~~qi~~al~-~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~  155 (263)
T d2j4za1          91 GTVYRELQKLSKFDEQRTATYITELANALS-YCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVH  155 (263)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSCSC
T ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeeeeeccccceecCCCCEeecccceeee
Confidence            999999987778999999999999999999 9999   899999999999    778999999999974

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.8e-27  Score=239.21  Aligned_cols=139  Identities=19%  Similarity=0.290  Sum_probs=121.1

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc----CCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE----DTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~----~~~~~LV~E  608 (678)
                      |++.||+|+||.||+|....+++.||+|.+...  .....+.|.+|++++  ++|||||++++++..    +...+||||
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE   92 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE   92 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence            456899999999999999878999999998754  334566799999884  899999999999864    356899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ||++|+|.+++.....+++.+++.++.||++||+ |||+ ..++||||||||+|     +++.+||+|||+|+.
T Consensus        93 ~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~-yLH~-~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          93 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQ-FLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHT-SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             CCCCCcHHHHHhccccccHHHHHHHHHHHHHHHH-HHHH-CCCCEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            9999999999987778999999999999999999 9998 22349999999999     467999999999973

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.7e-27  Score=241.05  Aligned_cols=135  Identities=17%  Similarity=0.235  Sum_probs=123.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+...+|+.||||+++.......+.+.+|+.+  .++|||||++++++.+.+..+||||||++|+|
T Consensus        25 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L  104 (293)
T d1yhwa1          25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (293)
T ss_dssp             CEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcH
Confidence            3679999999999999887899999999986655556789999988  49999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++.. ..+++.++..++.|++.||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       105 ~~~~~~-~~l~~~~~~~i~~qi~~aL~-yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~  165 (293)
T d1yhwa1         105 TDVVTE-TCMDEGQIAAVCRECLQALE-FLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (293)
T ss_dssp             HHHHHH-SCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             HHHhhc-cCCCHHHHHHHHHHHHHHHH-HHHH---CCCcccCCcHHHeEECCCCcEeeccchhhee
Confidence            998875 57999999999999999999 9999   899999999999    788999999999973

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-27  Score=241.35  Aligned_cols=133  Identities=26%  Similarity=0.398  Sum_probs=118.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|.++ +++.||||+++... ...++|.+|+.+  .++|||||+++|+|.+ +..+||||||++|+
T Consensus        17 ~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~   93 (272)
T d1qpca_          17 LVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGS   93 (272)
T ss_dssp             EEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCB
T ss_pred             EeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCc
Confidence            3478999999999999987 78999999997643 345789999988  4999999999998854 56799999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..++|.++++|+.|||+||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        94 L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~-~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          94 LVDFLKTPSGIKLTINKLLDMAAQIAEGMA-FIEE---RNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             HHHHTTSHHHHTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHHH-HHHh---CCcccCccchhheeeecccceeeccccceE
Confidence            99988754  46999999999999999999 9999   899999999999    78899999999997

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-27  Score=242.83  Aligned_cols=136  Identities=18%  Similarity=0.277  Sum_probs=124.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++.......++|.+|+.+  .++|||||++++++.+.+..+||||||++|+|
T Consensus        17 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L   96 (288)
T d2jfla1          17 IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV   96 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEH
T ss_pred             eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcH
Confidence            4689999999999999987899999999987666667789999988  49999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++.. ...+++.++..++.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus        97 ~~~~~~~~~~l~e~~~~~i~~qi~~gL~-ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          97 DAVMLELERPLTESQIQVVCKQTLDALN-YLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAK  159 (288)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCEEEeecChhheeECCCCCEEEEechhhhc
Confidence            999764 367999999999999999999 9999   899999999999    788999999999863

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.8e-27  Score=244.58  Aligned_cols=136  Identities=17%  Similarity=0.230  Sum_probs=123.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +.||+|+||.||+|+...+|+.||+|+++... ....+++.+|+.++  ++|||||+++++|.+.++.+||||||++|+|
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L   91 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL   91 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEH
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcH
Confidence            78999999999999998789999999997653 33456789999884  9999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          616 EEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+++.....+++..+..++.|+++||+ |||+.  .+||||||||+|    +++.+||+|||+|+.
T Consensus        92 ~~~l~~~~~l~~~~~~~~~~qil~aL~-yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          92 DQVLKKAGRIPEQILGKVSIAVIKGLT-YLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccc
Confidence            999987778999999999999999999 99971  379999999999    788999999999973

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=237.44  Aligned_cols=134  Identities=20%  Similarity=0.367  Sum_probs=116.9

Q ss_pred             hhcccCCceEEEEEEEcc--CCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          539 KVIGKGGFGTVYHGYLEF--NGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      +.||+|+||.||+|.++.  .++.||||+++...  ....++|.+|+.+  .++|||||+++|+|.. +..+||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            479999999999998752  34689999997542  2345679999988  4899999999999965 457899999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.++++....++|.++++|+.|||+||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~-ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~  156 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMK-YLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKA  156 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHh-hHHh---CCcccCCCcchhhcccccCcccccchhhhhh
Confidence            999999988788999999999999999999 9999   899999999999    789999999999973

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.9e-26  Score=239.99  Aligned_cols=135  Identities=21%  Similarity=0.252  Sum_probs=122.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+|+...+|+.||||+++...   ....++|.+|+.++  ++|||||++++++.+.+..+||||||++|
T Consensus        21 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g  100 (309)
T d1u5ra_          21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGS  100 (309)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCC
Confidence            67999999999999998889999999997643   23456789999884  89999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|..++.....+++.+++.++.||++||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus       101 ~l~~~~~~~~~l~e~~~~~i~~qi~~aL~-yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_         101 ASDLLEVHKKPLQEVEIAAVTHGALQGLA-YLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             chHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEeccCCCcceEEECCCCCEEEeecccccc
Confidence            99888776678999999999999999999 9999   899999999999    888999999999974

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.93  E-value=3.5e-26  Score=241.98  Aligned_cols=136  Identities=22%  Similarity=0.382  Sum_probs=124.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+.+.+|+.||||++........+.+.+|+.+  .++|||||++++++.+.+..+||||||++|+|
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L  110 (350)
T d1koaa2          31 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL  110 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBH
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCH
Confidence            4789999999999999987899999999987766667789999988  48999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.++..|+.||+.||+ |||+   .+||||||||+|      .++.+||+|||+|+.
T Consensus       111 ~~~l~~~~~~l~e~~~~~i~~qi~~aL~-ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~  175 (350)
T d1koaa2         111 FEKVADEHNKMSEDEAVEYMRQVCKGLC-HMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH  175 (350)
T ss_dssp             HHHHTCTTSCBCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHh---cCCeeeeechhHeeeccCCCCeEEEeecchhee
Confidence            9999654 67999999999999999999 9999   899999999999      357899999999974

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-26  Score=233.09  Aligned_cols=134  Identities=23%  Similarity=0.405  Sum_probs=122.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      |.+.||+|+||.||+|+.+ +++.||||+++.... ..++|.+|+..  .++|||||+++|+|.+.+..++||||+++|+
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~   85 (258)
T d1k2pa_           8 FLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGC   85 (258)
T ss_dssp             CCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEE
T ss_pred             EeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCc
Confidence            4588999999999999986 889999999986543 45789999988  4999999999999999999999999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++..+++|+.|+|+||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        86 l~~~~~~~~~~~~~~~~~~i~~qi~~gl~-~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~  148 (258)
T d1k2pa_          86 LLNYLREMRHRFQTQQLLEMCKDVCEAME-YLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR  148 (258)
T ss_dssp             HHHHHHSGGGCCCHHHHHHHHHHHHHHHH-HHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCC
T ss_pred             HHHhhhccccCCcHHHHHHHHHHHHHHHH-HHhh---cCcccccccceeEEEcCCCcEEECcchhhe
Confidence            99997654 67999999999999999999 9999   899999999999    77899999999997

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=236.01  Aligned_cols=131  Identities=28%  Similarity=0.437  Sum_probs=116.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      .+.||+|+||.||+|+.+   ..||||+++..  .....++|.+|+.++  ++|||||+++|++.+ +..+||||||++|
T Consensus        13 ~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~~g   88 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGS   88 (276)
T ss_dssp             CSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCCEE
T ss_pred             EEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCCCC
Confidence            478999999999999753   36999999754  345567899999884  899999999999854 5689999999999


Q ss_pred             CHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|.++|... ..++|.++++|+.|||+||+ |||+   .+||||||||+|    .++.+||+|||+|+
T Consensus        89 ~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~-yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  152 (276)
T d1uwha_          89 SLYHHLHIIETKFEMIKLIDIARQTAQGMD-YLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLAT  152 (276)
T ss_dssp             EHHHHHHTSCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSC
T ss_pred             CHHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHhc---CCEeccccCHHHEEEcCCCCEEEcccccee
Confidence            999999754 67999999999999999999 9999   899999999999    88899999999986

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.7e-26  Score=240.09  Aligned_cols=136  Identities=16%  Similarity=0.250  Sum_probs=115.5

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCch-hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV-QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~-~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.+.||+|+||.||+|+.+.+|+.||||++..... ...+.+.+|+.+  .++|||||++++++.+.+..+||||||++|
T Consensus        13 ~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg   92 (307)
T d1a06a_          13 FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGG   92 (307)
T ss_dssp             EEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            45789999999999999987899999999976532 234568888887  489999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCcc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIK  676 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar  676 (678)
                      +|.++|.....+++.++..++.|+++||+ |||+   .+||||||||+|       +++.+||+|||+|+
T Consensus        93 ~L~~~l~~~~~l~e~~~~~~~~qi~~al~-ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          93 ELFDRIVEKGFYTERDASRLIFQVLDAVK-YLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             BHHHHHHTCSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             cHHHhhhcccCCCHHHHHHHHHHHHHHHH-hhhh---ceeeeEEecccceeecccCCCceEEEeccceeE
Confidence            99999988888999999999999999999 9999   899999999999       46789999999997

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-26  Score=235.30  Aligned_cols=133  Identities=19%  Similarity=0.379  Sum_probs=116.9

Q ss_pred             hcccCCceEEEEEEEcc--CCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          540 VIGKGGFGTVYHGYLEF--NGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       540 ~IG~G~fG~Vy~g~~~~--~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .||+|+||.||+|.++.  ++..||||+++.. .....++|.+|+.+  .++|||||+++|+|.. +..+||||||++|+
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~   94 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP   94 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCc
Confidence            49999999999997642  4558999999765 34456789999988  4999999999999875 56899999999999


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |.+++... ..+++.++++|+.|+|+||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus        95 L~~~l~~~~~~l~~~~~~~i~~qi~~gL~-ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          95 LHKFLVGKREEIPVSNVAELLHQVSMGMK-YLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             HHHHhhccccCCCHHHHHHHHHHHHHHHH-HHHh---CCeecCcCchhheeeccCCceeeccchhhhc
Confidence            99998654 67999999999999999999 9999   899999999999    788999999999973

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.93  E-value=5e-26  Score=241.01  Aligned_cols=136  Identities=19%  Similarity=0.326  Sum_probs=124.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|+...+|+.||||+++.......+.+++|+.++  ++|||||++++++.+++..+||||||++|+|
T Consensus        34 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L  113 (352)
T d1koba_          34 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL  113 (352)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChH
Confidence            47899999999999999878999999999877666667888999884  8999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.+++.|+.||++||+ |||+   .+||||||||+|      ..+.+||+|||+|+.
T Consensus       114 ~~~~~~~~~~l~e~~~~~i~~qi~~aL~-ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~  178 (352)
T d1koba_         114 FDRIAAEDYKMSEAEVINYMRQACEGLK-HMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATK  178 (352)
T ss_dssp             HHHTTCTTCCBCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---CCeeecccccccccccccCCCeEEEeeccccee
Confidence            9988765 57999999999999999999 9999   899999999999      467899999999973

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=237.44  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=124.2

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      +.+.||+|+||.||+|+.+.+|+.||||++....   ....+.+.+|+.+  .++|||||++++++.+.+..+||||||+
T Consensus        12 i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~   91 (288)
T d1uu3a_          12 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK   91 (288)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccC
Confidence            3578999999999999998789999999997532   2345678899887  4899999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.+++.....+++.++..++.|+++||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus        92 gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~-ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~  157 (288)
T d1uu3a_          92 NGELLKYIRKIGSFDETCTRFYTAEIVSALE-YLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKV  157 (288)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCHHHhhhccCCCCHHHHHHHHHHHHHHHH-hhcc---ccEEcCcCCccccccCCCceEEeccccccee
Confidence            9999999987788999999999999999999 9999   899999999999    788999999999973

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.1e-26  Score=233.92  Aligned_cols=136  Identities=24%  Similarity=0.373  Sum_probs=117.9

Q ss_pred             hhhcccCCceEEEEEEEccCC----EEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNG----TQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g----~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .++||+|+||.||+|.++.++    ..||||+++... .....+|.+|+.++  ++|||||+++|+|.+.+..++|||||
T Consensus        12 ~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~   91 (283)
T d1mqba_          12 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM   91 (283)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEec
Confidence            478999999999999986433    479999997653 34456799999884  89999999999999999999999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      .+|++.+++... ..++|.++++|+.|+|+||+ |||+   .+||||||||+|    .++.+||+|||+||.
T Consensus        92 ~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~-~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          92 ENGALDKFLREKDGEFSVLQLVGMLRGIAAGMK-YLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             TTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             ccCcchhhhhcccccccHHHHHHHHHHHHHhhh-hccc---cccccCccccceEEECCCCeEEEcccchhhc
Confidence            999999988654 67999999999999999999 9999   899999999999    888999999999973

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-26  Score=234.07  Aligned_cols=138  Identities=18%  Similarity=0.233  Sum_probs=112.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHHh--cCCCCcccEEEEEEc--CCeeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQYI--VHHKNLTTLVGYCDE--DTNMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~--~~~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|+.+.+|+.||||.+...  .....+.|.+|++++  ++|||||++++++.+  .+..+||||||+
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~   88 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE   88 (269)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCT
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCC
Confidence            47899999999999999878999999999764  334456789999884  899999999999864  456899999999


Q ss_pred             CCCHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHhHhcCC--CCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSG----ANTLTWEARLRIATEAAQGSHSAFDQGC--CPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~----~~~l~~~~~l~ia~~ia~gL~~yLH~~~--~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++..    ...+++.+++.++.|+++||+ |||+..  ..+||||||||+|    .++.+||+|||+|+
T Consensus        89 ~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~-ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          89 GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK-ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             TEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             CCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            9999999863    367999999999999999999 999821  2359999999999    78899999999987

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.4e-26  Score=233.11  Aligned_cols=136  Identities=22%  Similarity=0.298  Sum_probs=121.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc------hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS------VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~------~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++...      ....+.|.+|+.+  .++|||||++++++.+.+..+|||||
T Consensus        15 ~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~   94 (293)
T d1jksa_          15 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILEL   94 (293)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            478999999999999998789999999996532      1235789999988  48999999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC----CcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK----NIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~----~~vkI~DFGlar~  677 (678)
                      |++|+|.+++.....+++.+++.++.|+++||+ |||+   .+||||||||+|    ..    ..+||+|||+|+.
T Consensus        95 ~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~-yLH~---~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          95 VAGGELFDFLAEKESLTEEEATEFLKQILNGVY-YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             CCCccccchhccccccchhHHHHHHHHHHHHHH-hhhh---cceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            999999999987778999999999999999999 9999   899999999999    22    2599999999863

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.92  E-value=1.1e-25  Score=230.54  Aligned_cols=136  Identities=20%  Similarity=0.241  Sum_probs=121.8

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch---------hhHHHHHHHHHHh--cC-CCCcccEEEEEEcCCeeEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV---------QGYKQFQAEVQYI--VH-HKNLTTLVGYCDEDTNMGL  605 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~---------~~~~~f~~Ev~~~--l~-H~NIv~l~g~~~~~~~~~L  605 (678)
                      .+.||+|+||+||+|+...+|+.||||+++....         ...+.+.+|+.++  ++ |||||++++++.+.+..+|
T Consensus         8 ~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~i   87 (277)
T d1phka_           8 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFL   87 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             ceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEE
Confidence            4789999999999999988899999999965421         1234577888773  65 9999999999999999999


Q ss_pred             EEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          606 IYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |||||++|+|.++|+.+..+++.+++.++.||++||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        88 vmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~-~lH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          88 VFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVIC-ALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHH---cCCcccccccceEEEcCCCCeEEccchheeE
Confidence            9999999999999987788999999999999999999 9999   899999999999    888999999999973

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-26  Score=233.03  Aligned_cols=133  Identities=23%  Similarity=0.402  Sum_probs=118.8

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.+.||+|+||.||+|+++ ++++||||+++... ...++|.+|+.+  .++|+|||+++|+|. .+..++|||||++|+
T Consensus        21 i~~~iG~G~fg~Vy~~~~~-~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~   97 (285)
T d1fmka3          21 LEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGS   97 (285)
T ss_dssp             EEEEEEECSSCEEEEEEET-TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTTCB
T ss_pred             EeeEEeeCCCeEEEEEEEC-CCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCCCc
Confidence            4578999999999999987 77889999997653 345789999988  499999999999985 456899999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |.+++...  ..++|.+++.|+.|||+||+ |||+   .+|+||||||+|    +++.+||+|||+|+
T Consensus        98 l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~-~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          98 LLDFLKGETGKYLRLPQLVDMAAQIASGMA-YVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             hhhhhhhcccccchHHHHHHHHHHHHHHHH-HHhh---hheecccccceEEEECCCCcEEEcccchhh
Confidence            99998753  57999999999999999999 9999   899999999999    67899999999997

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=236.32  Aligned_cols=137  Identities=28%  Similarity=0.464  Sum_probs=116.5

Q ss_pred             hhhhcccCCceEEEEEEEccCC-----EEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNG-----TQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g-----~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.++||+|+||.||+|+....+     ..||||.+.... ......|.+|+..+  + +|||||+++++|.+.+..+|||
T Consensus        41 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~  120 (325)
T d1rjba_          41 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF  120 (325)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEE
Confidence            4589999999999999975332     379999986643 33456788888773  4 8999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC-----------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC--
Q 038969          608 EFMAKGNLEEHLSGA-----------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP--  662 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~-----------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N--  662 (678)
                      |||++|+|.++|+..                       ..++|.+++.|+.|||+||+ |||+   .+||||||||+|  
T Consensus       121 Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~-yLH~---~~IiHRDlKp~Nil  196 (325)
T d1rjba_         121 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGME-FLEF---KSCVHRDLAARNVL  196 (325)
T ss_dssp             ECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHH-HHHH---TTEEETTCSGGGEE
T ss_pred             EcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeccCchhccc
Confidence            999999999999753                       24899999999999999999 9999   899999999999  


Q ss_pred             --CCCcEEEEeeCCccc
Q 038969          663 --HKNIVKLITFSIIKN  677 (678)
Q Consensus       663 --~~~~vkI~DFGlar~  677 (678)
                        .++.+||+|||+||.
T Consensus       197 l~~~~~~Kl~DFGla~~  213 (325)
T d1rjba_         197 VTHGKVVKICDFGLARD  213 (325)
T ss_dssp             EETTTEEEECCCGGGSC
T ss_pred             cccCCeEEEeecccccc
Confidence              888999999999973

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-25  Score=232.00  Aligned_cols=135  Identities=15%  Similarity=0.242  Sum_probs=121.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      .+.||+|+||.||+|....+|+.||||.++.... ....+.+|+.+  .++|||||++++++.+.+..+||||||++|+|
T Consensus        10 ~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L   88 (321)
T d1tkia_          10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDI   88 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBH
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcH
Confidence            4789999999999999988899999999976543 34568889887  49999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC------CCCcEEEEeeCCccc
Q 038969          616 EEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP------HKNIVKLITFSIIKN  677 (678)
Q Consensus       616 ~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N------~~~~vkI~DFGlar~  677 (678)
                      .+++... ..+++.++..|+.|+++||+ |||+   .+|+||||||+|      +...+||+|||+|+.
T Consensus        89 ~~~i~~~~~~l~e~~~~~i~~qi~~al~-yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~  153 (321)
T d1tkia_          89 FERINTSAFELNEREIVSYVHQVCEALQ-FLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             HHHHTSSSCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHH---cCCCcccccccceeecCCCceEEEEcccchhhc
Confidence            9999865 47999999999999999999 9999   899999999999      345899999999874

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=236.09  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=124.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++...   ....+.+.+|+.++  ++|||||++++++.+.+..++|||||++
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~g   89 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   89 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCC
Confidence            478999999999999998899999999997542   23456788888874  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++.++..++.|++.||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus        90 g~L~~~~~~~~~~~e~~~~~~~~qil~al~-ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~  154 (337)
T d1o6la_          90 GELFFHLSRERVFTEERARFYGAEIVSALE-YLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             CBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CchhhhhhcccCCcHHHHHHHHHHHhhhhh-hhhh---cCccccccCHHHeEecCCCCEEEeecccccc
Confidence            999999988788999999999999999999 9999   899999999999    788999999999984

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-25  Score=233.88  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||.||+|+.+.+|+.||||+++...   ....+.+.+|+.++  ++|||||++++++.+.+..++|||||++
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~g   88 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEG   88 (316)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCC
Confidence            478999999999999998789999999997532   23456788898883  8999999999999999999999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+|.+++.....+++..+..++.|++.||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus        89 g~l~~~~~~~~~~~~~~~~~~~~qi~~al~-~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~  153 (316)
T d1fota_          89 GELFSLLRKSQRFPNPVAKFYAAEVCLALE-YLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKY  153 (316)
T ss_dssp             CBHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             ccccccccccccccccHHHHHHHHHHHhhh-hhcc---CcEEccccCchheeEcCCCCEEEecCccceE
Confidence            999999988888999999999999999999 9999   899999999999    788999999999974

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=230.70  Aligned_cols=138  Identities=25%  Similarity=0.420  Sum_probs=120.5

Q ss_pred             hhhhhcccCCceEEEEEEEccCC---EEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeEEEEe
Q 038969          536 NFEKVIGKGGFGTVYHGYLEFNG---TQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMGLIYE  608 (678)
Q Consensus       536 ~f~~~IG~G~fG~Vy~g~~~~~g---~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~LV~E  608 (678)
                      +|.++||+|+||+||+|.+..++   ..||||+++.. .....++|.+|+++  .++|||||+++|+|.+ ++..++|||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            45688999999999999985332   36999999753 45566889999988  4999999999999865 568999999


Q ss_pred             cCCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||++|+|.+++... ..+++.++++++.|+|+||. |||+   ++|+||||||+|    +++.+||+|||+|+.
T Consensus       110 ~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~-~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         110 YMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMK-FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD  179 (311)
T ss_dssp             CCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCC
T ss_pred             EeecCchhhhhccccccchHHHHHHHHHHHHHhhh-hhcc---cCcccCCccHHhEeECCCCCEEEecccchhh
Confidence            99999999999865 56889999999999999999 9999   899999999999    888999999999974

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-25  Score=230.82  Aligned_cols=137  Identities=19%  Similarity=0.274  Sum_probs=122.3

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||+||+|+.+.+|+.||||+++...   ....+.+..|+..   .++|||||++++++.+++..+||||||
T Consensus         6 i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~   85 (320)
T d1xjda_           6 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYL   85 (320)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeec
Confidence            3578999999999999998889999999997532   2334556666554   389999999999999999999999999


Q ss_pred             CCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.+++.....+++.++..++.||+.||+ |||+   .+||||||||+|    +.+++||+|||+|+.
T Consensus        86 ~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~-ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~  152 (320)
T d1xjda_          86 NGGDLMYHIQSCHKFDLSRATFYAAEIILGLQ-FLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKE  152 (320)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCCcHHHHhhccCCCCHHHHHHHHHHHHHHHH-HHHh---CCeeeccCcccceeecCCCceeccccchhhh
Confidence            99999999987788999999999999999999 9999   899999999999    788999999999974

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-25  Score=229.96  Aligned_cols=137  Identities=26%  Similarity=0.495  Sum_probs=118.9

Q ss_pred             hhhhcccCCceEEEEEEEccCCE--EEEEEEeccC-chhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGT--QVAVKMLSAS-SVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~--~VAVK~l~~~-~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.++||+|+||.||+|+++.+|.  .||||+++.. .....++|.+|+.++  + +|||||+++|+|.+++..++||||+
T Consensus        14 ~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~   93 (309)
T d1fvra_          14 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   93 (309)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             EEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEec
Confidence            35789999999999999986776  5788888654 334556899999884  5 7999999999999999999999999


Q ss_pred             CCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEE
Q 038969          611 AKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLI  670 (678)
Q Consensus       611 ~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~  670 (678)
                      ++|+|.++|+..                ..++|.++++++.|||+||. |||+   .+||||||||+|    .++.+||+
T Consensus        94 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~-~lH~---~~iiHrDlkp~NIL~~~~~~~kl~  169 (309)
T d1fvra_          94 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMD-YLSQ---KQFIHRDLAARNILVGENYVAKIA  169 (309)
T ss_dssp             TTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEECGGGCEEEC
T ss_pred             CCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHH-hhhc---CCccccccccceEEEcCCCceEEc
Confidence            999999999653                57999999999999999999 9999   899999999999    77899999


Q ss_pred             eeCCccc
Q 038969          671 TFSIIKN  677 (678)
Q Consensus       671 DFGlar~  677 (678)
                      |||+|+.
T Consensus       170 DfG~a~~  176 (309)
T d1fvra_         170 DFGLSRG  176 (309)
T ss_dssp             CTTCEES
T ss_pred             ccccccc
Confidence            9999873

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.2e-25  Score=230.00  Aligned_cols=135  Identities=28%  Similarity=0.457  Sum_probs=119.8

Q ss_pred             hhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+.+     .+++.||||+++... ....++|.+|+.++  ++||||++++++|...+..++||||
T Consensus        18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~   97 (301)
T d1lufa_          18 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEY   97 (301)
T ss_dssp             EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEe
Confidence            478999999999999874     245789999997653 33467899999884  9999999999999999999999999


Q ss_pred             CCCCCHHHhhcCC------------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---
Q 038969          610 MAKGNLEEHLSGA------------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---  662 (678)
Q Consensus       610 ~~~GsL~~~L~~~------------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---  662 (678)
                      +++|+|.++|...                        ..++|.+++.|+.|+|+||+ |||+   .+||||||||+|   
T Consensus        98 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~-ylH~---~~ivHrDlKp~NILl  173 (301)
T d1lufa_          98 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMA-YLSE---RKFVHRDLATRNCLV  173 (301)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEE
T ss_pred             cCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhh-hccc---CCeEeeEEcccceEE
Confidence            9999999999532                        35899999999999999999 9999   899999999999   


Q ss_pred             -CCCcEEEEeeCCcc
Q 038969          663 -HKNIVKLITFSIIK  676 (678)
Q Consensus       663 -~~~~vkI~DFGlar  676 (678)
                       .++.+||+|||+|+
T Consensus       174 d~~~~~Kl~DFGls~  188 (301)
T d1lufa_         174 GENMVVKIADFGLSR  188 (301)
T ss_dssp             CGGGCEEECCCSCHH
T ss_pred             CCCCcEEEccchhhe
Confidence             77899999999987

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-25  Score=227.35  Aligned_cols=135  Identities=24%  Similarity=0.373  Sum_probs=113.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC----eeEEEEecCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT----NMGLIYEFMA  611 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~----~~~LV~Ey~~  611 (678)
                      .+.||+|+||.||+|++  +|+.||||+++.... ....++.|+..  .++|||||+++|+|.+.+    .++||||||+
T Consensus         8 ~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~   84 (303)
T d1vjya_           8 QESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHE   84 (303)
T ss_dssp             EEEEECCSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCT
T ss_pred             EEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEeccc
Confidence            47899999999999986  789999999975432 12223445544  378999999999997643    5899999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----CCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGC-----CPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~-----~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|+|.++|+. ..++|.++++++.|+|.||+ |||+.+     .++||||||||+|    +++.+||+|||+|+.
T Consensus        85 ~g~L~~~l~~-~~l~~~~~~~~~~~ia~gl~-~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          85 HGSLFDYLNR-YTVTVEGMIKLALSTASGLA-HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             TCBHHHHHHH-CCBCHHHHHHHHHHHHHHHH-HHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHH-HHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccc
Confidence            9999999986 57999999999999999999 999732     3689999999999    888999999999873

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-25  Score=225.14  Aligned_cols=133  Identities=26%  Similarity=0.435  Sum_probs=114.4

Q ss_pred             hhhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEc-CCeeEEEEecCCCC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-DTNMGLIYEFMAKG  613 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-~~~~~LV~Ey~~~G  613 (678)
                      |.+.||+|+||.||+|++  .|+.||||+++.+.  ..++|.+|+.+  .++|||||+++|+|.+ .+..+|||||+++|
T Consensus        11 ~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g   86 (262)
T d1byga_          11 LLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   86 (262)
T ss_dssp             EEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTE
T ss_pred             EeEEEecCCCeEEEEEEE--CCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCC
Confidence            457899999999999997  58899999997643  34679999988  4899999999999954 46689999999999


Q ss_pred             CHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.++|...  ..++|..+++|+.|||+||+ |||+   .+||||||||+|    .++.+||+|||+++.
T Consensus        87 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~-ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~  152 (262)
T d1byga_          87 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAME-YLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  152 (262)
T ss_dssp             EHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHhhcc-cccc---CceeccccchHhheecCCCCEeeccccccee
Confidence            999999754  45999999999999999999 9999   899999999999    889999999999985

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.2e-25  Score=233.65  Aligned_cols=136  Identities=19%  Similarity=0.259  Sum_probs=118.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHH---HHHh--cCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAE---VQYI--VHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~E---v~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .++||+|+||.||+|+...+|+.||||++....   ......+.+|   +.++  ++|||||++++++.+.+..+|||||
T Consensus         9 ~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~   88 (364)
T d1omwa3           9 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDL   88 (364)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEe
Confidence            478999999999999998789999999986432   1223344444   3332  6799999999999999999999999


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |++|+|.++|.....+++.++..++.||+.||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus        89 ~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~-ylH~---~~iiHrDlKP~NILl~~~g~iKl~DFGla~~  156 (364)
T d1omwa3          89 MNGGDLHYHLSQHGVFSEADMRFYAAEIILGLE-HMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACD  156 (364)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECSSSCEEECCCTTCEE
T ss_pred             cCCCcHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHH---CCccceeeccceeEEcCCCcEEEeeeceeee
Confidence            999999999987788999999999999999999 9999   899999999999    778999999999974

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.2e-25  Score=231.46  Aligned_cols=135  Identities=17%  Similarity=0.244  Sum_probs=123.2

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~G  613 (678)
                      +.||+|+||.||+|+.+.+|+.||||+++...   ....+.+.+|+.++  ++|||||++++++......++||||+.+|
T Consensus        47 ~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g  126 (350)
T d1rdqe_          47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG  126 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccccccccc
Confidence            68999999999999998789999999996532   23456788998884  89999999999999999999999999999


Q ss_pred             CHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          614 NLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       614 sL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|.+++.....+++.++..++.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       127 ~l~~~l~~~~~l~e~~~~~i~~qi~~aL~-yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~  190 (350)
T d1rdqe_         127 EMFSHLRRIGRFSEPHARFYAAQIVLTFE-YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             BHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             chhhhHhhcCCCCHHHHHHHHHHHHHHHH-HHHh---CCEecCcCCHHHcccCCCCCEEeeeceeeee
Confidence            99999987778999999999999999999 9999   899999999999    788999999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-25  Score=228.57  Aligned_cols=135  Identities=21%  Similarity=0.267  Sum_probs=117.6

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhh-----HHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQG-----YKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~-----~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~  611 (678)
                      ++||+|+||+||+|+.+.+|+.||||+++......     .+.+.+|+.+  .++|||||++++++..++..+|||||++
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~   83 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME   83 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCS
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhc
Confidence            57999999999999998789999999997543221     2458889887  4999999999999999999999999999


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|++..+......+++.++..++.||++||+ |||+   .+|+||||||+|    +++.+||+|||+|+.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~-~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~  149 (299)
T d1ua2a_          84 TDLEVIIKDNSLVLTPSHIKAYMLMTLQGLE-YLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKS  149 (299)
T ss_dssp             EEHHHHHTTCCSSCCSSHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             chHHhhhhhcccCCCHHHHHHHHHHHHHHHH-Hhhc---cceecccCCcceEEecCCCccccccCccccc
Confidence            9888877776678999999999999999999 9999   899999999999    889999999999974

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.6e-25  Score=223.44  Aligned_cols=136  Identities=19%  Similarity=0.290  Sum_probs=113.1

Q ss_pred             hhhhcccCCceEEEEEEEccC---CEEEEEEEeccCc-hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          537 FEKVIGKGGFGTVYHGYLEFN---GTQVAVKMLSASS-VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~~---g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      +.+.||+|+||.||+|++..+   +..||||.++... ....+.|.+|+..+  ++|||||+++|++. .+..++|||||
T Consensus        11 l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~   89 (273)
T d1mp8a_          11 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC   89 (273)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEec
Confidence            347899999999999987533   3579999997643 34456799999884  89999999999985 46789999999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ++|+|.+++... ..+++.+++.++.|+|+||+ |||+   .+||||||||+|    +++.+||+|||+|+.
T Consensus        90 ~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~-ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          90 TLGELRSFLQVRKYSLDLASLILYAYQLSTALA-YLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             TTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhh-hhcc---cCeeccccchhheeecCCCcEEEccchhhee
Confidence            999999987643 67999999999999999999 9999   899999999999    788999999999873

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=225.36  Aligned_cols=136  Identities=21%  Similarity=0.365  Sum_probs=120.0

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEe
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.+.||+|+||.||+|.+.     .+++.||||+++.. ..+....|.+|+.+  .++|||||+++|+|...+..++|||
T Consensus        24 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e  103 (308)
T d1p4oa_          24 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIME  103 (308)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEe
Confidence            3478999999999999874     23578999999764 34455679999988  4899999999999999999999999


Q ss_pred             cCCCCCHHHhhcCC----------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCC
Q 038969          609 FMAKGNLEEHLSGA----------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSI  674 (678)
Q Consensus       609 y~~~GsL~~~L~~~----------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGl  674 (678)
                      ||++|+|.+++...          ..+++.++++++.|+|+||. |||+   .+|+||||||+|    +++++||+|||+
T Consensus       104 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~-~LH~---~~ivHrDlk~~NiLld~~~~~Kl~DFGl  179 (308)
T d1p4oa_         104 LMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA-YLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGM  179 (308)
T ss_dssp             CCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHH-HHHH---TTCBCSCCSGGGEEECTTCCEEECCTTC
T ss_pred             ecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHH-HHhh---CCeeeceEcCCceeecCCceEEEeeccc
Confidence            99999999998632          45799999999999999999 9999   899999999999    888999999999


Q ss_pred             cc
Q 038969          675 IK  676 (678)
Q Consensus       675 ar  676 (678)
                      |+
T Consensus       180 a~  181 (308)
T d1p4oa_         180 TR  181 (308)
T ss_dssp             CC
T ss_pred             ce
Confidence            97

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=225.80  Aligned_cols=134  Identities=25%  Similarity=0.391  Sum_probs=114.9

Q ss_pred             hhhcccCCceEEEEEEEccCCE----EEEEEEeccC-chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGT----QVAVKMLSAS-SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFM  610 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~----~VAVK~l~~~-~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~  610 (678)
                      .++||+|+||.||+|.+..+|+    .||||.++.. +....++|.+|+.+  .++|||||+++|+|.++ ..++++||+
T Consensus        14 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~e~~   92 (317)
T d1xkka_          14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLM   92 (317)
T ss_dssp             EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEEECC
T ss_pred             eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEEEec
Confidence            3789999999999999875664    6899998754 33456789999988  49999999999999864 567889999


Q ss_pred             CCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          611 AKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       611 ~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      .+|+|.+++... ..+++..+++|+.|||+||+ |||+   .+||||||||+|    .++.+||+|||+|+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~-yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFGla~  159 (317)
T d1xkka_          93 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN-YLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAK  159 (317)
T ss_dssp             TTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEEEETTEEEECCCSHHH
T ss_pred             cCCcccccccccccCCCHHHHHHHHHHHHHHHH-HHHH---cCcccCcchhhcceeCCCCCeEeeccccce
Confidence            999999988754 68999999999999999999 9999   899999999999    78899999999987

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-24  Score=226.52  Aligned_cols=130  Identities=18%  Similarity=0.262  Sum_probs=113.7

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEc----CCeeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDE----DTNMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~----~~~~~LV~Ey~~  611 (678)
                      ++||+|+||.||+|+...+|+.||||+++..     ..+.+|+.+   ..+|||||++++++..    ....+||||||+
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~   92 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD   92 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCC
Confidence            5799999999999999878999999999753     345567655   3689999999999864    466899999999


Q ss_pred             CCCHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          612 KGNLEEHLSGA--NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       612 ~GsL~~~L~~~--~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      +|+|.++|...  ..+++.++..|+.|+++||+ |||+   .+|+||||||+|       +.+.+||+|||+|+.
T Consensus        93 gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~-ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~  163 (335)
T d2ozaa1          93 GGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ-YLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  163 (335)
T ss_dssp             SEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             CCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHH-HHHH---cCCccccccccccccccccccccccccccceeee
Confidence            99999999764  57999999999999999999 9999   899999999999       356799999999973

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=3.3e-24  Score=219.47  Aligned_cols=135  Identities=21%  Similarity=0.256  Sum_probs=120.9

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCc---hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCC----eeEEEEe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS---VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDT----NMGLIYE  608 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~---~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~----~~~LV~E  608 (678)
                      .+.||+|+||.||+|+...+|+.||||+++...   ....+.|.+|+.++  ++|||||++++++...+    ..+||||
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE   91 (277)
T d1o6ya_          12 GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME   91 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEE
Confidence            478999999999999998789999999997542   33456789999884  89999999999987643    3789999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |+++|+|.+++.....+++.+++.|+.|+++||+ |||+   .+||||||||+|    .++.++|+|||+++
T Consensus        92 ~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~-~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          92 YVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN-FSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIAR  159 (277)
T ss_dssp             CCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEETTSCEEECCCTTCE
T ss_pred             CCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHH-HHHh---CCccCccccCcccccCccccceeehhhhhh
Confidence            9999999999987788999999999999999999 9999   899999999999    88999999999876

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-24  Score=224.71  Aligned_cols=137  Identities=25%  Similarity=0.390  Sum_probs=120.4

Q ss_pred             hhhhcccCCceEEEEEEEc-----cCCEEEEEEEeccCc-hhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE-----FNGTQVAVKMLSASS-VQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      +.+.||+|+||.||+|++.     ..++.||||+++... .....+|.+|+.++  + +|||||+++|+|.+++..+|||
T Consensus        27 l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvm  106 (311)
T d1t46a_          27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (311)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEE
Confidence            4578999999999999863     255789999997653 34556788888773  4 7999999999999999999999


Q ss_pred             ecCCCCCHHHhhcCC------------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCC
Q 038969          608 EFMAKGNLEEHLSGA------------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKN  665 (678)
Q Consensus       608 Ey~~~GsL~~~L~~~------------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~  665 (678)
                      |||++|+|.++|+..                  ..+++.++++++.|||+||+ |||+   .+||||||||+|    ..+
T Consensus       107 E~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~-~LH~---~~ivHrDLKp~NIl~~~~~  182 (311)
T d1t46a_         107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA-FLAS---KNCIHRDLAARNILLTHGR  182 (311)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEEETTT
T ss_pred             EcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHH-HHHh---CCeeecccccccccccccC
Confidence            999999999999642                  36999999999999999999 9999   899999999999    888


Q ss_pred             cEEEEeeCCccc
Q 038969          666 IVKLITFSIIKN  677 (678)
Q Consensus       666 ~vkI~DFGlar~  677 (678)
                      .+||+|||+|+.
T Consensus       183 ~~ki~DfG~~~~  194 (311)
T d1t46a_         183 ITKICDFGLARD  194 (311)
T ss_dssp             EEEECCCGGGSC
T ss_pred             cccccccchhee
Confidence            999999999973

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-24  Score=222.16  Aligned_cols=136  Identities=27%  Similarity=0.394  Sum_probs=108.4

Q ss_pred             hhhhcccCCceEEEEEEEcc-----CCEEEEEEEeccCc-hhhHHHHHHHHHH---hcCCCCcccEEEEEEcC-CeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLEF-----NGTQVAVKMLSASS-VQGYKQFQAEVQY---IVHHKNLTTLVGYCDED-TNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~~-----~g~~VAVK~l~~~~-~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~-~~~~LV  606 (678)
                      +.+.||+|+||.||+|....     +++.||||+++... ....++|..|+..   +.+|+||+.+++++.+. ...++|
T Consensus        17 ~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv   96 (299)
T d1ywna1          17 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   96 (299)
T ss_dssp             EEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             EeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEE
Confidence            35789999999999998742     34689999997643 3445667777665   36899999999998664 568999


Q ss_pred             EecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      ||||++|+|.++|+..                ..+++.+++.++.|||+||+ |||+   .+||||||||+|    +++.
T Consensus        97 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~-ylH~---~~ivHrDlKp~NILl~~~~~  172 (299)
T d1ywna1          97 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGME-FLAS---RKCIHRDLAARNILLSEKNV  172 (299)
T ss_dssp             EECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECGGGC
T ss_pred             EEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHH-HHHh---CCCcCCcCCccceeECCCCc
Confidence            9999999999999632                35899999999999999999 9999   899999999999    7889


Q ss_pred             EEEEeeCCcc
Q 038969          667 VKLITFSIIK  676 (678)
Q Consensus       667 vkI~DFGlar  676 (678)
                      +||+|||+||
T Consensus       173 ~Kl~DFGla~  182 (299)
T d1ywna1         173 VKICDFGLAR  182 (299)
T ss_dssp             EEECC-----
T ss_pred             EEEccCcchh
Confidence            9999999997

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-24  Score=220.53  Aligned_cols=135  Identities=24%  Similarity=0.379  Sum_probs=109.8

Q ss_pred             hhhcccCCceEEEEEEEccC-C--EEEEEEEeccC---chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEec
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-G--TQVAVKMLSAS---SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEF  609 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-g--~~VAVK~l~~~---~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey  609 (678)
                      .+.||+|+||.||+|+...+ +  ..||||+++..   .....++|.+|+.+  .++|||||+++|+|.+ +..++||||
T Consensus        13 ~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~lv~e~   91 (273)
T d1u46a_          13 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTEL   91 (273)
T ss_dssp             EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred             EEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchheeeee
Confidence            47899999999999987422 2  47999999754   23445789999987  4999999999999965 567899999


Q ss_pred             CCCCCHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |++|+|.+++... ..+++..+++++.|+|+||+ |||+   .+|+||||||+|    .++.+||+|||+|+.
T Consensus        92 ~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~-ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          92 APLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMG-YLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             CTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             ecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHH-Hhhh---CCEeeeeecHHHhccccccceeeccchhhhh
Confidence            9999999988654 57999999999999999999 9999   899999999999    788999999999873

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-24  Score=221.02  Aligned_cols=133  Identities=17%  Similarity=0.319  Sum_probs=114.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|+||.||+|+...+|+.||||+++....  ...+++.+|+.++  ++|||||++++++.+++..++||||+.++ 
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~-   86 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD-   86 (298)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEE-
T ss_pred             cEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCc-
Confidence            689999999999999987899999999965432  2356788999884  99999999999999999999999999764 


Q ss_pred             HHHhhc-C-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLS-G-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~-~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +.+++. . ...+++.++..++.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|+
T Consensus        87 ~~~~~~~~~~~~l~e~~~~~~~~qil~~L~-yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~  150 (298)
T d1gz8a_          87 LKKFMDASALTGIPLPLIKSYLFQLLQGLA-FCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  150 (298)
T ss_dssp             HHHHHHHTTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             hhhhhhhhcccCCCHHHHHHHHHHHHHHHH-Hhhc---CCEEccccCchheeecccCcceeccCCcce
Confidence            444443 3 367999999999999999999 9999   899999999999    78899999999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.89  E-value=1.2e-23  Score=216.22  Aligned_cols=133  Identities=14%  Similarity=0.189  Sum_probs=120.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCch--hhHHHHHHHHHH--hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV--QGYKQFQAEVQY--IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~--~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|+||+||+|+.+ +|+.||||+++....  ...+.|.+|+.+  .++|||||++++++...+..++++||+.++.
T Consensus         8 ~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~   86 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDL   86 (286)
T ss_dssp             EEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEH
T ss_pred             cEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhh
Confidence            68999999999999987 889999999976532  235788999988  4999999999999999999999999999888


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +..+......+++.++..++.||++||+ |||+   .+||||||||+|    .++.+||+|||+|+
T Consensus        87 ~~~~~~~~~~l~~~~~~~i~~qi~~~L~-~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~  148 (286)
T d1ob3a_          87 KKLLDVCEGGLESVTAKSFLLQLLNGIA-YCHD---RRVLHRDLKPQNLLINREGELKIADFGLAR  148 (286)
T ss_dssp             HHHHHTSTTCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             HHHHHhhcCCcchhhhHHHHHHHHHHHH-Hhcc---CcEEecCCCCceeeEcCCCCEEecccccce
Confidence            8877777788999999999999999999 9999   899999999999    88999999999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=216.51  Aligned_cols=136  Identities=26%  Similarity=0.416  Sum_probs=113.4

Q ss_pred             hhhcccCCceEEEEEEEccC-------CEEEEEEEeccCc-hhhHHHHHHHHHHh---cCCCCcccEEEEEEcCCeeEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFN-------GTQVAVKMLSASS-VQGYKQFQAEVQYI---VHHKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~-------g~~VAVK~l~~~~-~~~~~~f~~Ev~~~---l~H~NIv~l~g~~~~~~~~~LV  606 (678)
                      .+.||+|+||.||+|+....       +..||||+++... .....++.+|+..+   .+|||||+++++|.+.+..++|
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v   97 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI   97 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEE
Confidence            47899999999999987422       3479999997654 34457788887662   4899999999999999999999


Q ss_pred             EecCCCCCHHHhhcCC----------------CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCc
Q 038969          607 YEFMAKGNLEEHLSGA----------------NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNI  666 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~----------------~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~  666 (678)
                      ||||++|+|.++|...                ..+++.++++++.|+|+||+ |||+   .+||||||||+|    .++.
T Consensus        98 ~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~-ylH~---~~ivHrDiKp~NiLl~~~~~  173 (299)
T d1fgka_          98 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGME-YLAS---KKCIHRDLAARNVLVTEDNV  173 (299)
T ss_dssp             ECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCSGGGEEECTTCC
T ss_pred             EEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHH-Hhhh---CCEEeeeecccceeecCCCC
Confidence            9999999999999643                35899999999999999999 9999   899999999999    8889


Q ss_pred             EEEEeeCCccc
Q 038969          667 VKLITFSIIKN  677 (678)
Q Consensus       667 vkI~DFGlar~  677 (678)
                      +||+|||+++.
T Consensus       174 ~kl~dfg~~~~  184 (299)
T d1fgka_         174 MKIADFGLARD  184 (299)
T ss_dssp             EEECSTTCCCC
T ss_pred             eEeccchhhcc
Confidence            99999999873

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6e-24  Score=217.15  Aligned_cols=136  Identities=18%  Similarity=0.257  Sum_probs=117.1

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch------hhHHHHHHHHHHh--cC--CCCcccEEEEEEcCCeeEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV------QGYKQFQAEVQYI--VH--HKNLTTLVGYCDEDTNMGLIY  607 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~------~~~~~f~~Ev~~~--l~--H~NIv~l~g~~~~~~~~~LV~  607 (678)
                      .+.||+|+||.||+|+...+|+.||||++.....      ...+++.+|+.++  ++  |||||++++++.+.+..++||
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~   88 (273)
T d1xwsa_           9 GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLIL   88 (273)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEE
Confidence            4789999999999999987899999999865321      1123456677663  44  999999999999999999999


Q ss_pred             ecCCC-CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          608 EFMAK-GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       608 Ey~~~-GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ||+.+ +++.+++.....+++.++..++.|+++||+ |||+   .+||||||||+|     +.+.+||+|||+|+.
T Consensus        89 e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~-~lH~---~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~  160 (273)
T d1xwsa_          89 ERPEPVQDLFDFITERGALQEELARSFFWQVLEAVR-HCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGAL  160 (273)
T ss_dssp             ECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHH-HHHH---CCCccccCcccceEEecCCCeEEECcccccee
Confidence            99976 688888877788999999999999999999 9999   899999999999     457899999999873

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.6e-23  Score=211.49  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=123.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHHh--cCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQYI--VHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~~--l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      +.||+|+||+||+|+...+|+.||||+++...  ....+++.+|+.++  ++|+||+++++++......++|+|++.+++
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~   87 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDL   87 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEH
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeeccccc
Confidence            68999999999999998889999999996543  23467889999884  899999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          615 LEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |..++.....+++.++..++.|+++||+ |||+   .+||||||||+|    .++.+||+|||.|+.
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~q~~~aL~-~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~  150 (292)
T d1unla_          88 KKYFDSCNGDLDPEIVKSFLFQLLKGLG-FCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             cccccccccccchhHHHHHHHHHHHHHH-Hhhc---CCEeeecccCcccccccCCceeeeecchhhc
Confidence            9999888788999999999999999999 9999   899999999999    788999999999974

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.87  E-value=1.6e-22  Score=211.88  Aligned_cols=129  Identities=17%  Similarity=0.266  Sum_probs=113.3

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEc--CCeeEEEEecCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDE--DTNMGLIYEFMAK  612 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~--~~~~~LV~Ey~~~  612 (678)
                      .+.||+|+||+||+|+...+|+.||||+++...   .+++.+|+.++  + +||||+++++++..  ....++|||||++
T Consensus        40 ~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~  116 (328)
T d3bqca1          40 VRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN  116 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCS
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCC
Confidence            378999999999999998789999999997643   45678888773  5 59999999999974  4568999999999


Q ss_pred             CCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCcc
Q 038969          613 GNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIK  676 (678)
Q Consensus       613 GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar  676 (678)
                      |+|..+.   +.+++.++..++.||++||+ |||+   .+||||||||+|     ++..+||+|||+|+
T Consensus       117 ~~L~~~~---~~l~e~~i~~i~~qil~aL~-~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~  178 (328)
T d3bqca1         117 TDFKQLY---QTLTDYDIRFYMYEILKALD-YCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  178 (328)
T ss_dssp             CBGGGTT---TSCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCSGGGEEEETTTTEEEECCGGGCE
T ss_pred             CcHHHHh---cCCCHHHHHHHHHHHHHHHH-HHhh---cccccccccccceEEcCCCCeeeecccccce
Confidence            9998775   35999999999999999999 9999   899999999999     45579999999986

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=214.80  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=108.3

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCCcccEEEEEEcC------CeeEEEEecC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKNLTTLVGYCDED------TNMGLIYEFM  610 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~------~~~~LV~Ey~  610 (678)
                      ++||+|+||+||+|+...+|+.||||++......    +.+|+.+  .++|+||+++++++...      ...+||||||
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~  101 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV  101 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECC
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEecc
Confidence            6899999999999999878999999999765322    2346665  48999999999998542      3478999999


Q ss_pred             CCCCHHHh---hcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-----CCCcEEEEeeCCccc
Q 038969          611 AKGNLEEH---LSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-----HKNIVKLITFSIIKN  677 (678)
Q Consensus       611 ~~GsL~~~---L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-----~~~~vkI~DFGlar~  677 (678)
                      ++|.+...   ......+++.++..++.|+++||+ |||+   .+|+||||||+|     +...+||+|||+|+.
T Consensus       102 ~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~-yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_         102 PETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA-YIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             CCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHH-HHHh---cCCcccCCCcceEEEecCCCceeEecccchhh
Confidence            87643333   234468999999999999999999 9999   899999999999     345899999999873

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-22  Score=213.32  Aligned_cols=133  Identities=16%  Similarity=0.218  Sum_probs=112.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc-hhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC----eeEEEEecCC
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS-VQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT----NMGLIYEFMA  611 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~-~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~----~~~LV~Ey~~  611 (678)
                      +.||+|+||+||+|+...+|+.||||+++... ....+++.+|+.+  .++||||+++++++....    ..++++||+.
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~   93 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLM   93 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECC
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeec
Confidence            78999999999999988789999999997543 3445678899888  499999999999986532    2345556677


Q ss_pred             CCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          612 KGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       612 ~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      +|+|.+++.. ..+++.++..++.|+++||+ |||+   .+||||||||+|    +++.+||+|||+|+
T Consensus        94 ~g~L~~~l~~-~~l~~~~i~~i~~qil~al~-yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~  157 (345)
T d1pmea_          94 GADLYKLLKT-QHLSNDHICYFLYQILRGLK-YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLAR  157 (345)
T ss_dssp             CEEHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CCchhhhhhc-CCCCHHHHHHHHHHHHHHHH-HHHH---CCCcCCCCCcceEEECCCCCEEEcccCcee
Confidence            9999999975 47999999999999999999 9999   899999999999    78899999999986

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.3e-22  Score=211.11  Aligned_cols=133  Identities=19%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEcCC------eeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDEDT------NMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~~~------~~~LV~E  608 (678)
                      +.||+|+||.||+|....+|+.||||+++..  .....+.+.+|+.+  .++|||||+++++|...+      ..+||||
T Consensus        24 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  103 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMP  103 (346)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEe
Confidence            6899999999999999878999999999754  33445678899888  389999999999997654      5799999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      |+ +++|..+.+. ..+++..++.++.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       104 ~~-~~~l~~~~~~-~~l~~~~~~~~~~qi~~aL~-~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~  170 (346)
T d1cm8a_         104 FM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLR-YIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQ  170 (346)
T ss_dssp             CC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             cc-cccHHHHHHh-ccccHHHHHHHHHHHHHHHH-HHHh---CCCcccccCcchhhcccccccccccccceec
Confidence            99 5577777654 57999999999999999999 9999   899999999999    889999999999974

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6e-22  Score=206.50  Aligned_cols=134  Identities=18%  Similarity=0.276  Sum_probs=114.8

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccCc--hhhHHHHHHHHHH--hcCCCCcccEEEEEEc--------CCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSASS--VQGYKQFQAEVQY--IVHHKNLTTLVGYCDE--------DTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~--~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~--------~~~~~LV  606 (678)
                      +.||+|+||+||+|+...+|+.||||++....  ....+++.+|+.+  .++|+|++++++++..        .+..++|
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv   95 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLV   95 (318)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEE
Confidence            68999999999999998789999999986542  2334678888887  4999999999999855        3468999


Q ss_pred             EecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          607 YEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      |||++++.+..+......++..++..++.|+++||+ |||+   .+|+||||||+|    .++.+||+|||+|+
T Consensus        96 ~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~-~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          96 FDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY-YIHR---NKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             EECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHH-HHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EeccCCCccchhhhcccccccHHHHHHHHHHHHHHH-Hhcc---CCEEecCcCchheeecCCCcEEeeecceee
Confidence            999998887777666678999999999999999999 9999   899999999999    88899999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.85  E-value=1.1e-21  Score=202.14  Aligned_cols=132  Identities=17%  Similarity=0.308  Sum_probs=112.7

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---hcCCCCcccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---IVHHKNLTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~l~H~NIv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+|+.||||+++.....  .++.+|++.   +-+|+|++.+++++..+...++||||+ +|+
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~   86 (293)
T d1csna_          10 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPS   86 (293)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS--CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc--HHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCC
Confidence            47899999999999999878999999998654321  223344433   455699999999999999999999999 689


Q ss_pred             HHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---------CCCcEEEEeeCCcc
Q 038969          615 LEEHLSGA-NTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---------HKNIVKLITFSIIK  676 (678)
Q Consensus       615 L~~~L~~~-~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---------~~~~vkI~DFGlar  676 (678)
                      |.+++... ..+++.+++.++.|++.||+ |||+   .+||||||||+|         ..+.+||+|||+|+
T Consensus        87 l~~~~~~~~~~~~~~~~~~i~~q~~~~l~-~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~  154 (293)
T d1csna_          87 LEDLLDLCGRKFSVKTVAMAAKQMLARVQ-SIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  154 (293)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             HHHHHHhhccchhhHHHHHHHHHHHHHHH-HHHH---CCceeccCCccceeecCcccccCCceEEcccceeE
Confidence            99998754 57999999999999999999 9999   899999999999         25679999999997

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-22  Score=210.69  Aligned_cols=137  Identities=22%  Similarity=0.242  Sum_probs=118.8

Q ss_pred             hhhhcccCCceEEEEEEEc---cCCEEEEEEEeccCc----hhhHHHHHHHHHH--hcC-CCCcccEEEEEEcCCeeEEE
Q 038969          537 FEKVIGKGGFGTVYHGYLE---FNGTQVAVKMLSASS----VQGYKQFQAEVQY--IVH-HKNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       537 f~~~IG~G~fG~Vy~g~~~---~~g~~VAVK~l~~~~----~~~~~~f~~Ev~~--~l~-H~NIv~l~g~~~~~~~~~LV  606 (678)
                      +.+.||+|+||+||+|+..   .+|+.||||.++...    ....+.+.+|+.+  .++ ||||+++++++.+....+++
T Consensus        28 ~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v  107 (322)
T d1vzoa_          28 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLI  107 (322)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeee
Confidence            3479999999999999873   357899999986532    1234567778777  364 58999999999999999999


Q ss_pred             EecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          607 YEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       607 ~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||||.+|+|.+++.....++...+..++.|+++||+ |||+   .+||||||||+|    .++.+||+|||+|+.
T Consensus       108 ~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~-~lH~---~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         108 LDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE-HLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             eecccccHHHHHHHhcccccHHHHHHHHHHHHHHHH-Hhhc---CCEEeccCCccceeecCCCCEEEeeccchhh
Confidence            999999999999987778899999999999999999 9999   899999999999    788999999999873

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.3e-21  Score=202.26  Aligned_cols=133  Identities=19%  Similarity=0.311  Sum_probs=108.6

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH--hcCCCC-cccEEEEEEcCCeeEEEEecCCCCC
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY--IVHHKN-LTTLVGYCDEDTNMGLIYEFMAKGN  614 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l~H~N-Iv~l~g~~~~~~~~~LV~Ey~~~Gs  614 (678)
                      .+.||+|+||.||+|+...+|+.||||++......  .++..|+++  .++|+| |+.+.++..+.+..++||||+. |+
T Consensus        12 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~   88 (299)
T d1ckia_          12 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PS   88 (299)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS--CCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CB
T ss_pred             eEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC--HHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-Cc
Confidence            47899999999999999878999999998765432  345666666  476665 5555555677888999999995 56


Q ss_pred             HHHhhc-CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC-------CCCcEEEEeeCCccc
Q 038969          615 LEEHLS-GANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP-------HKNIVKLITFSIIKN  677 (678)
Q Consensus       615 L~~~L~-~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N-------~~~~vkI~DFGlar~  677 (678)
                      |.+.+. ....+++.+++.++.|+++||+ |||+   .+||||||||+|       .+..+||+|||+|+.
T Consensus        89 l~~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          89 LEDLFNFCSRKFSLKTVLLLADQMISRIE-YIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH-HHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             hhhhhhhccCCCcHHHHHHHHHHHHHHHH-HHHH---CCeeeccCCHhhccccccCCCceeeeeccCccee
Confidence            666554 4478999999999999999999 9999   899999999999       455799999999973

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=206.89  Aligned_cols=134  Identities=19%  Similarity=0.268  Sum_probs=113.5

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc-----CCeeEEEEec
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE-----DTNMGLIYEF  609 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~-----~~~~~LV~Ey  609 (678)
                      +.||+|+||+||+|+...+|+.||||+++..  +....+++.+|+.+  .++|+|+|++++++..     ....++++||
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~  103 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTH  103 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEe
Confidence            6899999999999999878999999999754  33445678889888  4999999999999853     2345677788


Q ss_pred             CCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          610 MAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       610 ~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +.+|+|.+++.. ..+++.++..++.||+.||+ |||+   .+|+||||||+|    .++.+|++|||+|..
T Consensus       104 ~~gg~L~~~~~~-~~l~e~~~~~i~~qil~aL~-~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~a~~  170 (348)
T d2gfsa1         104 LMGADLNNIVKC-QKLTDDHVQFLIYQILRGLK-YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARH  170 (348)
T ss_dssp             CCSEEHHHHHTT-CCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECCC----C
T ss_pred             ecCCchhhhccc-ccccHHHHHHHHHHHHHHHH-HHHh---CCCcccccCCccccccccccccccccchhcc
Confidence            889999999975 57999999999999999999 9999   899999999999    888999999999863

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-21  Score=200.79  Aligned_cols=135  Identities=18%  Similarity=0.227  Sum_probs=109.9

Q ss_pred             hhcccCCceEEEEEEEccC-CEEEEEEEeccCch--hhHHHHHHHHHH---h--cCCCCcccEEEEEEc-----CCeeEE
Q 038969          539 KVIGKGGFGTVYHGYLEFN-GTQVAVKMLSASSV--QGYKQFQAEVQY---I--VHHKNLTTLVGYCDE-----DTNMGL  605 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~-g~~VAVK~l~~~~~--~~~~~f~~Ev~~---~--l~H~NIv~l~g~~~~-----~~~~~L  605 (678)
                      +.||+|+||.||+|+...+ ++.||||+++....  .....+.+|+.+   +  .+||||+++++++..     ....++
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~   92 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL   92 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEE
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEE
Confidence            6899999999999998544 67899999865321  122345566554   2  589999999999853     346899


Q ss_pred             EEecCCCCCHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          606 IYEFMAKGNLEEHLSG-ANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       606 V~Ey~~~GsL~~~L~~-~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      +|||+++|.+...... ...+++..+..++.|+++||+ |||+   .+||||||||+|    +.+.+||+|||+++.
T Consensus        93 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~-yLH~---~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~  165 (305)
T d1blxa_          93 VFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD-FLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARI  165 (305)
T ss_dssp             EEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH-HHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             EEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHH-HHHh---CCEEecCCCccEEEEcCCCCeeecchhhhhh
Confidence            9999998877655443 367999999999999999999 9999   899999999999    778999999999874

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=201.82  Aligned_cols=132  Identities=22%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC--chhhHHHHHHHHHH--hcCCCCcccEEEEEEc------CCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS--SVQGYKQFQAEVQY--IVHHKNLTTLVGYCDE------DTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~--~~~~~~~f~~Ev~~--~l~H~NIv~l~g~~~~------~~~~~LV~E  608 (678)
                      ++||+|+||+||+|++..+|+.||||++...  .....+++.+|+.+  .++|||||++++++..      ....|+|||
T Consensus        23 ~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~E  102 (355)
T d2b1pa1          23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVME  102 (355)
T ss_dssp             EECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEE
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEe
Confidence            6899999999999999878999999999754  33445678889887  4899999999999953      467899999


Q ss_pred             cCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CCCcEEEEeeCCccc
Q 038969          609 FMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HKNIVKLITFSIIKN  677 (678)
Q Consensus       609 y~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~~~vkI~DFGlar~  677 (678)
                      ||.++ +.+.+.  ..+++.++..++.|++.||+ |||+   .+|+||||||+|    .++.+|++|||+++.
T Consensus       103 y~~~~-l~~~~~--~~~~~~~i~~~~~qil~gl~-~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~~~~  168 (355)
T d2b1pa1         103 LMDAN-LCQVIQ--MELDHERMSYLLYQMLCGIK-HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_dssp             CCSEE-HHHHHT--SCCCHHHHHHHHHHHHHHHH-HHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             ccchH-HHHhhh--cCCCHHHHHHHHHHHHHHHH-Hhhh---cccccccCCccccccccccceeeechhhhhc
Confidence            99765 555554  46899999999999999999 9999   899999999999    788999999999874

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.72  E-value=4.2e-18  Score=163.67  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=95.5

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCch------------------hhHHHHHHHHHH--hcCCCCcccEEEEE
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSV------------------QGYKQFQAEVQY--IVHHKNLTTLVGYC  597 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~------------------~~~~~f~~Ev~~--~l~H~NIv~l~g~~  597 (678)
                      .+.||+|+||.||+|... +|++||||+++....                  .....+.+|...  .++|.+++..+++.
T Consensus         5 g~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           5 GKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             CCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            478999999999999986 899999998753210                  011223445444  37899999988653


Q ss_pred             EcCCeeEEEEecCCCCCHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC---CCCcEEEEeeCC
Q 038969          598 DEDTNMGLIYEFMAKGNLEEHLSGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP---HKNIVKLITFSI  674 (678)
Q Consensus       598 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N---~~~~vkI~DFGl  674 (678)
                          ..+++|||++++.+.+       ++.....+++.|+++||+ |||+   .+|+||||||+|   .+..++|+|||+
T Consensus        84 ----~~~lvme~~~~~~~~~-------l~~~~~~~i~~ql~~~l~-~lH~---~giiHrDiKP~NILv~~~~~~liDFG~  148 (191)
T d1zara2          84 ----GNAVLMELIDAKELYR-------VRVENPDEVLDMILEEVA-KFYH---RGIVHGDLSQYNVLVSEEGIWIIDFPQ  148 (191)
T ss_dssp             ----TTEEEEECCCCEEGGG-------CCCSCHHHHHHHHHHHHH-HHHH---TTEECSCCSTTSEEEETTEEEECCCTT
T ss_pred             ----CCEEEEEeeccccccc-------hhhHHHHHHHHHHHHHHH-HHhh---CCEEEccCChhheeeeCCCEEEEECCC
Confidence                2379999998866543       344556789999999999 9999   899999999999   666799999999


Q ss_pred             ccc
Q 038969          675 IKN  677 (678)
Q Consensus       675 ar~  677 (678)
                      |+.
T Consensus       149 a~~  151 (191)
T d1zara2         149 SVE  151 (191)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            864

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.3e-16  Score=166.41  Aligned_cols=136  Identities=14%  Similarity=0.140  Sum_probs=104.2

Q ss_pred             hhhcccCCceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh-------------cCCCCcccEEEEEEc--CCe
Q 038969          538 EKVIGKGGFGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-------------VHHKNLTTLVGYCDE--DTN  602 (678)
Q Consensus       538 ~~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~-------------l~H~NIv~l~g~~~~--~~~  602 (678)
                      .+.||+|+||+||+|+...+|+.||||+++.... ..+.+.+|+.++             +.|+||+++++++..  ...
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~   96 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG   96 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccc
Confidence            4789999999999999987899999999976532 234556666541             247899999998854  455


Q ss_pred             eEEEEecCCCCCHHHh-h--cCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCccccCCCCCC----CC------CcEEE
Q 038969          603 MGLIYEFMAKGNLEEH-L--SGANTLTWEARLRIATEAAQGSHSAFDQGCCPHICESSSSSNP----HK------NIVKL  669 (678)
Q Consensus       603 ~~LV~Ey~~~GsL~~~-L--~~~~~l~~~~~l~ia~~ia~gL~~yLH~~~~~~iiHrDlk~~N----~~------~~vkI  669 (678)
                      .+++++++..+..... .  .....+++..+..++.|+++||+ |||+.  .+|+||||||+|    ..      ..+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~-~lh~~--~~IvHrDlKp~NIll~~~~~~~~~~~~kl  173 (362)
T d1q8ya_          97 VHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD-YMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKI  173 (362)
T ss_dssp             EEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHHT--TCEECSCCSGGGEEEEEEETTTTEEEEEE
T ss_pred             eeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHH-HHhhh--cCcccccCChhHeeeeccCcccccceeeE
Confidence            6677777655543222 2  23367899999999999999999 99973  579999999999    11      24999


Q ss_pred             EeeCCccc
Q 038969          670 ITFSIIKN  677 (678)
Q Consensus       670 ~DFGlar~  677 (678)
                      +|||.|+.
T Consensus       174 ~dfg~s~~  181 (362)
T d1q8ya_         174 ADLGNACW  181 (362)
T ss_dssp             CCCTTCEE
T ss_pred             eecccccc
Confidence            99999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=2.6e-16  Score=162.57  Aligned_cols=122  Identities=30%  Similarity=0.473  Sum_probs=104.3

Q ss_pred             CCchhhHHHHHHHHHhhC---CCCCCC--CCCCCCcccccccccCCCCCCCCCeEEEeeCCCCCCcc--ccchhhhcCcC
Q 038969          333 LTSQQDVDAIMSIKKKYG---VKKNWQ--GDPCAPKVYLWQGLNCSYDGNELPRIISLNLSSSGISG--EIITYIFSLTS  405 (678)
Q Consensus       333 ~~~~~d~~al~~~k~~~~---~~~~w~--g~pc~p~~~~w~gv~C~~~~~~~~~l~~l~Ls~n~l~G--~ip~~~~~l~~  405 (678)
                      .+.++|.+||++||+.+.   ...+|.  +|+|.   +.|.||.|+..+ ...||+.|+|++++++|  .||++|++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~---~~w~gv~C~~~~-~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC---CcCCCeEEeCCC-CcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            478899999999999985   346894  47774   469999998654 34589999999999998  58999999999


Q ss_pred             CCeeccCC-CcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          406 LQALDLSN-NSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       406 L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      |++|||++ |+|+|.||+++++|++|++|+|++|+++|.+|..+.....+..+.
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            99999997 899999999999999999999999999998888777666554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.95  E-value=9.6e-11  Score=119.98  Aligned_cols=92  Identities=26%  Similarity=0.385  Sum_probs=79.0

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      ..+.++.++++++.++|.+| +++.+++|+.|+|++|+|+|.+|+.|++|++|+.|+|++|+|+|+||+ +..+..+.  
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~--  294 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD--  294 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSC--
T ss_pred             cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCC--
Confidence            35688899999999999876 689999999999999999999999999999999999999999999996 44554443  


Q ss_pred             cccccCCCCCcccc--cc
Q 038969          458 SLSVDGNPKLCHTA--SC  473 (678)
Q Consensus       458 ~l~~~~n~~lC~~~--~c  473 (678)
                      .+.+.+|+.+|+.+  .|
T Consensus       295 ~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         295 VSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGGTCSSSEEESTTSSCC
T ss_pred             HHHhCCCccccCCCCCCC
Confidence            35678999999864  55

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=5.6e-09  Score=98.83  Aligned_cols=95  Identities=20%  Similarity=0.200  Sum_probs=76.5

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccch-hhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIIT-YIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~-~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      |.|..|.|+..+      +-++.++.|+|++|.+++.++. .|.++++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            578899998653      1235788999999999886644 578999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccchhhhccccccc
Q 038969          438 NNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       438 N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      |++++-.|..+..+..+..+++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEEC
T ss_pred             ccccccCHHHHhCCCccccccc
Confidence            9999666666777776655544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=9.7e-09  Score=93.91  Aligned_cols=101  Identities=25%  Similarity=0.315  Sum_probs=81.5

Q ss_pred             ccccccCCCCC--------CCCCeEEEeeCCCCC-CccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhcc
Q 038969          366 LWQGLNCSYDG--------NELPRIISLNLSSSG-ISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLT  436 (678)
Q Consensus       366 ~w~gv~C~~~~--------~~~~~l~~l~Ls~n~-l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls  436 (678)
                      .+.+++|+..+        ...++++.|+|++|+ ++..-+..|.+|++|+.|+|++|+|+..-|..|..+++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            47789998643        135688999998775 775445679999999999999999998889999999999999999


Q ss_pred             CCCCCCCCcccchhhhccccccccccCCCCCcc
Q 038969          437 GNNLEGSVPAGLLERAKNGLLSLSVDGNPKLCH  469 (678)
Q Consensus       437 ~N~l~G~iP~~l~~~~~~~~l~l~~~~n~~lC~  469 (678)
                      +|+|+ .+|........  ...+.+.+|+-.|.
T Consensus        89 ~N~l~-~l~~~~~~~~~--l~~L~L~~Np~~C~  118 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLS--LQELVLSGNPLHCS  118 (156)
T ss_dssp             SSCCS-CCCSTTTCSCC--CCEEECCSSCCCCC
T ss_pred             CCCCc-ccChhhhcccc--ccccccCCCcccCC
Confidence            99999 78877665443  34567789998774

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=1.5e-08  Score=95.86  Aligned_cols=89  Identities=24%  Similarity=0.375  Sum_probs=77.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|++.+.++..+..+++|+.|+|++|++++..|..|..|++|+.|+|++|+|++..|..+..+.++..  
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~--  130 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS--  130 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE--
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc--
Confidence            578999999999999999999999999999999999999888889999999999999999999766666766666544  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.+|+..|.
T Consensus       131 l~L~~N~~~~~  141 (192)
T d1w8aa_         131 LNLASNPFNCN  141 (192)
T ss_dssp             EECTTCCBCCS
T ss_pred             ccccccccccc
Confidence            45668877663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2e-07  Score=92.42  Aligned_cols=88  Identities=27%  Similarity=0.361  Sum_probs=77.8

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ..++..|+++.|.+++..+..+..++.|+.|++++|+|++..|..+..+++|+.|+|++|+|+ .||..+..+..+..  
T Consensus       123 l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~--  199 (266)
T d1p9ag_         123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF--  199 (266)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE--
T ss_pred             ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCE--
Confidence            468889999999999777777889999999999999999988999999999999999999999 89999888776554  


Q ss_pred             ccccCCCCCcc
Q 038969          459 LSVDGNPKLCH  469 (678)
Q Consensus       459 l~~~~n~~lC~  469 (678)
                      +.+.|||-.|.
T Consensus       200 L~L~~Np~~Cd  210 (266)
T d1p9ag_         200 AFLHGNPWLCN  210 (266)
T ss_dssp             EECCSCCBCCS
T ss_pred             EEecCCCCCCC
Confidence            55679998884

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=2e-07  Score=81.37  Aligned_cols=82  Identities=28%  Similarity=0.354  Sum_probs=64.4

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCC-cccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSV-PAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i-P~~l~~~~~~~~l  457 (678)
                      ++.++.|+|++|.++ .+|+.++.+++|+.|+|++|.+++ +|+ ++++++|+.|++++|+++..- +..+..++.+..+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cCc-cccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            568899999999998 688889999999999999999984 564 889999999999999998432 2345665555444


Q ss_pred             cccccCCC
Q 038969          458 SLSVDGNP  465 (678)
Q Consensus       458 ~l~~~~n~  465 (678)
                        .+.+|+
T Consensus        96 --~l~~N~  101 (124)
T d1dcea3          96 --NLQGNS  101 (124)
T ss_dssp             --ECTTSG
T ss_pred             --ECCCCc
Confidence              455665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=3.7e-07  Score=79.65  Aligned_cols=71  Identities=31%  Similarity=0.410  Sum_probs=59.9

Q ss_pred             EeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          384 SLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       384 ~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      .|+|++|+++ .++ .+..|+.|++|||++|+++ .+|+.++.+++|+.|++++|++++ +| .+..++++..+.+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL   72 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEEC
Confidence            6899999998 555 5899999999999999998 689999999999999999999995 56 3666666554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.3e-07  Score=91.67  Aligned_cols=88  Identities=27%  Similarity=0.264  Sum_probs=76.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      .++++.|+|++|++++..+..+.++++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+.++.  .
T Consensus       152 ~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~--~  229 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ--Y  229 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC--E
T ss_pred             ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC--E
Confidence            45788999999999988888899999999999999999999999999999999999999999988887777776655  4


Q ss_pred             ccccCCCCCc
Q 038969          459 LSVDGNPKLC  468 (678)
Q Consensus       459 l~~~~n~~lC  468 (678)
                      +.+.+|+-.|
T Consensus       230 L~l~~N~l~C  239 (284)
T d1ozna_         230 LRLNDNPWVC  239 (284)
T ss_dssp             EECCSSCEEC
T ss_pred             EEecCCCCCC
Confidence            5567888766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=85.66  Aligned_cols=78  Identities=23%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccccc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      +.++.|+|++|.+++..+..|.++++|+.|+|++|+|+ .+|. ++.+++|+.|+|++|++++ +|..+..+..+..+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            57999999999999766678999999999999999998 5665 4789999999999999996 4666666666665555


Q ss_pred             c
Q 038969          460 S  460 (678)
Q Consensus       460 ~  460 (678)
                      .
T Consensus       108 ~  108 (266)
T d1p9ag_         108 S  108 (266)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=2.5e-06  Score=85.74  Aligned_cols=85  Identities=25%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             ccccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          364 VYLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       364 ~~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      .|.|.+|.|+..+      +-++.++.|+|++|+++.-.+..|.+++.|+.|++++|.++...|..+.+++.|+.|+|++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3789999998642      1246799999999999865556799999999999999999988899999999999999999


Q ss_pred             CCCCCCCcccch
Q 038969          438 NNLEGSVPAGLL  449 (678)
Q Consensus       438 N~l~G~iP~~l~  449 (678)
                      |+++ .+|..+.
T Consensus        89 n~l~-~l~~~~~   99 (305)
T d1xkua_          89 NQLK-ELPEKMP   99 (305)
T ss_dssp             SCCS-BCCSSCC
T ss_pred             CccC-cCccchh
Confidence            9998 5776543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5e-06  Score=75.79  Aligned_cols=60  Identities=23%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      ++++.|+|++|.++ .++ .+..|++|+.|+|++|+++...|..+..+++|+.|+|++|+++
T Consensus        41 ~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          41 DQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             TCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             ccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence            45666666666666 332 3566666666677776666544444556666666777766665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=6.8e-06  Score=82.45  Aligned_cols=65  Identities=28%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      +.++.|++++|.+++..+..+..+++|++|+|++|+|+ .||+.+..+++|+.|+|++|+++ .|+.
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccCh
Confidence            45566666777666666666666677777777777666 55666666677777777777666 3443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.9e-06  Score=75.83  Aligned_cols=81  Identities=22%  Similarity=0.221  Sum_probs=63.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccc-hhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGL-LERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l-~~~~~~~~l  457 (678)
                      +.+++.|+|++|+++ .||..+..++.|+.||||+|+++ .++ .+..+++|+.|+|++|+++. +|..+ ..++.+..+
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccC-CCccccccccccccc
Confidence            357899999999998 56766788999999999999998 565 47889999999999999985 55544 345555444


Q ss_pred             cccccCCC
Q 038969          458 SLSVDGNP  465 (678)
Q Consensus       458 ~l~~~~n~  465 (678)
                        .+.+|.
T Consensus        93 --~L~~N~   98 (162)
T d1a9na_          93 --ILTNNS   98 (162)
T ss_dssp             --ECCSCC
T ss_pred             --eecccc
Confidence              444554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.7e-06  Score=81.29  Aligned_cols=81  Identities=21%  Similarity=0.167  Sum_probs=71.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      ...+..+++++|++++..+..|..++.|+.|+|++|+|++..|..+..+++|+.|++++|++++..|..+..+.++..++
T Consensus       128 ~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            46789999999999976677799999999999999999998899999999999999999999998899888877666554


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       208 l  208 (284)
T d1ozna_         208 L  208 (284)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=9.2e-06  Score=83.68  Aligned_cols=75  Identities=29%  Similarity=0.298  Sum_probs=61.6

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      .+.++.|+|++|++++..  .+..+++|+.|+|++|++++ +| .++.|++|+.|+|++|++++-+|  +..+.++..++
T Consensus       306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            467889999999999753  38899999999999999985 55 68999999999999999997655  56666555554


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       380 L  380 (384)
T d2omza2         380 L  380 (384)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=72.85  Aligned_cols=63  Identities=27%  Similarity=0.207  Sum_probs=54.6

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      .+++|+.|+|++|+|+..-|..|..+++|+.|+|++|+|+ .+|..+.....|+.|+|++|.|.
T Consensus        54 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            3579999999999999777778999999999999999999 66665555557999999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.53  E-value=2.3e-05  Score=75.04  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=59.1

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      .++++.|++++|.+++..  .+.++++|+.|+|++|++++ +|+ ++++++|+.|+|++|++++ +|. +..+..+..++
T Consensus       150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVT  223 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEE
T ss_pred             ccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEE
Confidence            457899999999987543  38899999999999999985 554 7899999999999999995 553 55555554444


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       224 l  224 (227)
T d1h6ua2         224 L  224 (227)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.30  E-value=0.00056  Score=66.15  Aligned_cols=94  Identities=12%  Similarity=0.045  Sum_probs=61.0

Q ss_pred             ceEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh--c-CCCCcccEEEEEEcCCeeEEEEecCCCCCHHHhhcCC
Q 038969          546 FGTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI--V-HHKNLTTLVGYCDEDTNMGLIYEFMAKGNLEEHLSGA  622 (678)
Q Consensus       546 fG~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~--l-~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL~~~L~~~  622 (678)
                      .+.||+...  +++.+.+|+...........+.+|...+  + .+--+.+++.++...+..++|||++++..+.+.....
T Consensus        27 ~~~v~rv~~--~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~~~  104 (263)
T d1j7la_          27 PAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDE  104 (263)
T ss_dssp             SSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTTTC
T ss_pred             CCcEEEEEe--CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccccccc
Confidence            358998764  5677888988665433334456666552  2 3444678888888888999999999998887654321


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhHhc
Q 038969          623 NTLTWEARLRIATEAAQGSHSAFDQ  647 (678)
Q Consensus       623 ~~l~~~~~l~ia~~ia~gL~~yLH~  647 (678)
                        .   ...+++.++++.|+ -||+
T Consensus       105 --~---~~~~~~~~l~~~l~-~lH~  123 (263)
T d1j7la_         105 --Q---SPEKIIELYAECIR-LFHS  123 (263)
T ss_dssp             --S---CHHHHHHHHHHHHH-HHHT
T ss_pred             --c---cHHHHHHHHHHHHH-HHhc
Confidence              1   12334555666666 6654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.12  E-value=7.8e-05  Score=76.40  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=50.9

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCC
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      .+++++.|+|++|++++ +| .+.+|++|+.|+|++|++++..|  +.+|++|+.|+|++|
T Consensus       327 ~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         327 SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            35789999999999985 54 69999999999999999997665  889999999999988

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.08  E-value=0.00015  Score=68.46  Aligned_cols=75  Identities=31%  Similarity=0.438  Sum_probs=55.6

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      .+.+..++++.|.+++  +..+..+++|+.+++++|++++ +++ +++|++|+.|+|++|+++ .+| .+..+.++..++
T Consensus       133 l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEE
T ss_pred             cccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEE
Confidence            3567788888888875  3357788889999999999885 443 788889999999999887 466 466665555444


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       207 L  207 (210)
T d1h6ta2         207 L  207 (210)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.06  E-value=2.5e-05  Score=73.43  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=54.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhcccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLLS  458 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l~  458 (678)
                      +++++.|+|++|+++ .|+ .+..|++|+.|+|++|+++ .+|.....++.|+.|++++|+++. ++ .+..+..+..++
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccc
Confidence            567888888888887 454 4888888888888888887 677766667788888888888874 43 355555554444


Q ss_pred             c
Q 038969          459 L  459 (678)
Q Consensus       459 l  459 (678)
                      +
T Consensus       122 L  122 (198)
T d1m9la_         122 M  122 (198)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0001  Score=66.64  Aligned_cols=41  Identities=34%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             hcCcCCCeeccCCCcCCCC--CChhhhhhhhhhhhhccCCCCC
Q 038969          401 FSLTSLQALDLSNNSLTGS--VPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       401 ~~l~~L~~L~Ls~N~l~G~--iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      ..++.|++|+||+|+++.-  ++..+..+++|+.|+|++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3455555555555555431  2333444555555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=4.9e-05  Score=73.10  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             cccccccCCCCC------CCCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCCh-hhhhhhhhhhhhcc-
Q 038969          365 YLWQGLNCSYDG------NELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLT-  436 (678)
Q Consensus       365 ~~w~gv~C~~~~------~~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~ls-  436 (678)
                      |....+.|+..+      .-++.++.|+|++|+++...+..|.++++|++|+|++|.+...+|. .+..++.++.|.+. 
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            566778887543      1134789999999999854444689999999999999998877654 56778888888876 


Q ss_pred             CCCCCCCCcccchhhhccccccc
Q 038969          437 GNNLEGSVPAGLLERAKNGLLSL  459 (678)
Q Consensus       437 ~N~l~G~iP~~l~~~~~~~~l~l  459 (678)
                      .|++....|..+..+.++..+.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEE
T ss_pred             ccccccccccccccccccccccc
Confidence            57787666666666666555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.93  E-value=0.00026  Score=65.94  Aligned_cols=68  Identities=34%  Similarity=0.425  Sum_probs=52.9

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhh
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERA  452 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  452 (678)
                      +++++.|++++|++.. ++ .+..+++|+.|++++|++++ +| .++++++|+.|+|++|+++. || .+..+.
T Consensus       127 l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~  194 (199)
T d2omxa2         127 LTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLT  194 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCT
T ss_pred             hhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCC
Confidence            5688899999998874 33 58889999999999999986 44 37889999999999999885 54 344433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.91  E-value=0.00032  Score=65.96  Aligned_cols=59  Identities=27%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  441 (678)
                      +++++.|+|++|.+++ ++ .++.|++|+.|+|++|++++ +| .+..+++|+.|++++|.+.
T Consensus        67 l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc
Confidence            3566667777776665 33 25666677777777776663 44 3566666777777766665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.77  E-value=0.00024  Score=67.53  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=48.5

Q ss_pred             CCCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC
Q 038969          378 ELPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG  437 (678)
Q Consensus       378 ~~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  437 (678)
                      .+++++.|+|++|++++ +| .+++|++|++|+|++|++++ +|+ ++++++|+.|+|++
T Consensus       171 ~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            35789999999999986 44 38999999999999999995 554 88999999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.74  E-value=3e-05  Score=72.82  Aligned_cols=81  Identities=25%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCc--ccchhhhcccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVP--AGLLERAKNGL  456 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP--~~l~~~~~~~~  456 (678)
                      +++++.|+|++|.++ .||..+..+..|+.|+|++|+++. ++ .+..+++|+.|+|++|+++. ++  ..+..++++..
T Consensus        69 l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLED  144 (198)
T ss_dssp             HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSE
T ss_pred             CccccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccccccchhcc-ccccccccCCCccce
Confidence            468999999999987 677767777899999999999985 44 47899999999999999984 33  24555555443


Q ss_pred             ccccccCCC
Q 038969          457 LSLSVDGNP  465 (678)
Q Consensus       457 l~l~~~~n~  465 (678)
                        +.+.+|+
T Consensus       145 --L~L~~N~  151 (198)
T d1m9la_         145 --LLLAGNP  151 (198)
T ss_dssp             --EEECSSH
T ss_pred             --eecCCCc
Confidence              4455665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00017  Score=65.10  Aligned_cols=67  Identities=28%  Similarity=0.326  Sum_probs=53.5

Q ss_pred             CCeEEEeeCCCCCCccc--cchhhhcCcCCCeeccCCCcCCCCCCh-hhhhhhhhhhhhccCCCCCCCCcc
Q 038969          379 LPRIISLNLSSSGISGE--IITYIFSLTSLQALDLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLEGSVPA  446 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~--ip~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~ls~N~l~G~iP~  446 (678)
                      .+.++.|+|++|+++..  ++..+..+++|+.||||+|.++. +++ .......|+.|+|++|.++.....
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCccc
Confidence            56899999999999853  45668899999999999999994 443 233345689999999999876654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.71  E-value=0.00053  Score=63.77  Aligned_cols=60  Identities=23%  Similarity=0.352  Sum_probs=37.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCC
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      +++++.|+|++|.+++..|  +.+|++|+.|++++|.+. .+|. ++.++.|+.|++++|.+..
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-ccccccccccccccccccc
Confidence            3566667777776665322  666666777777666665 3332 5666666666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.60  E-value=0.00046  Score=69.18  Aligned_cols=60  Identities=30%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAG  447 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  447 (678)
                      +++++.|+|++|+++ .||..   +++|+.|+|++|+|+ .+|..   +++|+.|+|++|+++ .+|..
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            568999999999998 67754   578899999999998 78875   457889999999998 67753

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.26  E-value=0.0072  Score=57.56  Aligned_cols=72  Identities=13%  Similarity=0.062  Sum_probs=47.1

Q ss_pred             cccCCc-eEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHH---h-cCCCCcccEEEEEEcCCeeEEEEecCCCCCH
Q 038969          541 IGKGGF-GTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQY---I-VHHKNLTTLVGYCDEDTNMGLIYEFMAKGNL  615 (678)
Q Consensus       541 IG~G~f-G~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~---~-l~H~NIv~l~g~~~~~~~~~LV~Ey~~~GsL  615 (678)
                      +..|.. +.||+.... ++..+.+|.-......   .+..|+..   + -+.-.+.++++++.+.+..++||||+++-++
T Consensus        18 ~~~G~s~~~v~r~~~~-~~~~~vlK~~~~~~~~---~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQ-GRPVLFVKTDLSGALN---ELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CSCTTSSCEEEEEECT-TSCCEEEEEECSCTTS---CHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             cCCcccCCeEEEEEeC-CCCEEEEEeCCccCHh---HHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            344443 578988765 6677888987654332   23333333   1 2233467888888888889999999987655


Q ss_pred             H
Q 038969          616 E  616 (678)
Q Consensus       616 ~  616 (678)
                      .
T Consensus        94 ~   94 (255)
T d1nd4a_          94 L   94 (255)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.08  E-value=0.0017  Score=64.74  Aligned_cols=69  Identities=26%  Similarity=0.405  Sum_probs=40.0

Q ss_pred             CCeEEEeeCCCCCCccccchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccCCCCCCCCcccchhhhccccc
Q 038969          379 LPRIISLNLSSSGISGEIITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTGNNLEGSVPAGLLERAKNGLL  457 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~~~~l  457 (678)
                      +++++.|+|++|+|+ .+|..+   .+|+.|++++|+++ .+++..   +.|+.|+|++|.++ .+|. ...+..+..+
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~lp---~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDLP---PLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhhc---cccccccccccccc-cccc-hhhhccceee
Confidence            356777777777777 666543   45666666666665 333321   34667777777776 4554 2333333333

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.01  Score=60.95  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=42.0

Q ss_pred             hhcccCCceEEEEEEEccCCEEEEEEEeccC------c---hhhHHHHHHHHHHh-cCC--CCcccEEEEEEcCCeeEEE
Q 038969          539 KVIGKGGFGTVYHGYLEFNGTQVAVKMLSAS------S---VQGYKQFQAEVQYI-VHH--KNLTTLVGYCDEDTNMGLI  606 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~~g~~VAVK~l~~~------~---~~~~~~f~~Ev~~~-l~H--~NIv~l~g~~~~~~~~~LV  606 (678)
                      +.||.|....||+.....+++.|+||.-...      +   ...+..++.++... -.+  ..+.+++.+  +....++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEEE
Confidence            4689999999999987655778999964321      1   11122223333221 122  345666655  34556899


Q ss_pred             EecCCCCC
Q 038969          607 YEFMAKGN  614 (678)
Q Consensus       607 ~Ey~~~Gs  614 (678)
                      ||++++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EeccCCcc
Confidence            99997643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.005  Score=58.33  Aligned_cols=72  Identities=26%  Similarity=0.304  Sum_probs=49.5

Q ss_pred             CeEEEeeCCCCCCccccchhhhcCcCCCee-ccCCCcCCCCCCh-hhhhhhhhhhhhccCCCCCCCCccc-chhhhcc
Q 038969          380 PRIISLNLSSSGISGEIITYIFSLTSLQAL-DLSNNSLTGSVPE-FLSELHFLRVLNLTGNNLEGSVPAG-LLERAKN  454 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~ip~~~~~l~~L~~L-~Ls~N~l~G~iP~-~l~~l~~L~~L~ls~N~l~G~iP~~-l~~~~~~  454 (678)
                      ..+..|++++|+++ .++....+...++.+ ++++|+++ .||. .+..+++|+.|+|++|+++ .+|.. +..+..+
T Consensus       153 ~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L  227 (242)
T d1xwdc1         153 FESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL  227 (242)
T ss_dssp             SSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred             ccceeeeccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence            46778888888888 455555555555544 56777787 4544 5788899999999999988 56553 4444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0075  Score=58.98  Aligned_cols=59  Identities=29%  Similarity=0.393  Sum_probs=39.6

Q ss_pred             CeEEEeeCCCC-CCccccchhhhcCcCCCeeccCC-CcCCCCCChhhhhhhhhhhhhccCC
Q 038969          380 PRIISLNLSSS-GISGEIITYIFSLTSLQALDLSN-NSLTGSVPEFLSELHFLRVLNLTGN  438 (678)
Q Consensus       380 ~~l~~l~Ls~n-~l~G~ip~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N  438 (678)
                      ++++.|+|+++ .+++.....+.++++|++|+|++ ++++......++++++|+.|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            46667777664 46666666677777777777776 4566666666667777777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0025  Score=65.89  Aligned_cols=63  Identities=30%  Similarity=0.412  Sum_probs=45.3

Q ss_pred             CeEEEeeCCCCCCccc----cchhhh-cCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSSGISGE----IITYIF-SLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      +.++.|+|++|.++..    +...+. ....|+.|+|++|+++..    ++..+..+++|+.|+|++|.++.
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            5688899999988632    122222 234789999999988754    56667778889999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0044  Score=60.71  Aligned_cols=63  Identities=25%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             CCeEEEeeCCCCCCccc-cchhhhcCcCCCeeccCCCcCCCCCChhhhhhhhhhhhhccC-CCCC
Q 038969          379 LPRIISLNLSSSGISGE-IITYIFSLTSLQALDLSNNSLTGSVPEFLSELHFLRVLNLTG-NNLE  441 (678)
Q Consensus       379 ~~~l~~l~Ls~n~l~G~-ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~-N~l~  441 (678)
                      ..+++.|||+++.+++. ++.-+..+++|++|+|+++.+++..+..++++++|+.|+|++ +.++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc
Confidence            45889999999988765 455578899999999999999999999999999999999998 4565

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.0049  Score=63.58  Aligned_cols=63  Identities=22%  Similarity=0.273  Sum_probs=36.5

Q ss_pred             eEEEeeCCCCCCccc----cchhhh-cCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCCC
Q 038969          381 RIISLNLSSSGISGE----IITYIF-SLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       381 ~l~~l~Ls~n~l~G~----ip~~~~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      .++.|+|++|.++..    ++..+. ..+.|++|+|++|+++..    +++.+..+++|+.|+|++|+++..
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            566667777666542    333332 245566777777766532    444455556667777777766643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.32  E-value=0.0064  Score=61.02  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=43.6

Q ss_pred             CeEEEeeCCCCCCccc-----cchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCCC
Q 038969          380 PRIISLNLSSSGISGE-----IITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~-----ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +.++.|+|+.|+++..     +...+..++.|+.|+|++|.++..    +...+..++.|+.|+|++|.+++.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            3567788888877632     334466777888888888877543    445556677788888888877654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.70  E-value=0.029  Score=55.95  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             CeEEEeeCCCCCCccc----cchhhhcCcCCCeeccCCCcCCCCCChhhh----h--hhhhhhhhccCCCCCCC
Q 038969          380 PRIISLNLSSSGISGE----IITYIFSLTSLQALDLSNNSLTGSVPEFLS----E--LHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~iP~~l~----~--l~~L~~L~ls~N~l~G~  443 (678)
                      ++++.|+|++|.++..    +...+..++.|+.|+|++|.+++.-...+.    .  .+.|+.|+|++|+++..
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChH
Confidence            5788899999998643    556678889999999999998876444443    2  24688999999988753

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.33  Score=47.64  Aligned_cols=65  Identities=14%  Similarity=0.075  Sum_probs=36.8

Q ss_pred             eEEEEEEEccCCEEEEEEEeccCchhhHHHHHHHHHHh-------cCCCCcccEE--EEEEcCCeeEEEEecCCCC
Q 038969          547 GTVYHGYLEFNGTQVAVKMLSASSVQGYKQFQAEVQYI-------VHHKNLTTLV--GYCDEDTNMGLIYEFMAKG  613 (678)
Q Consensus       547 G~Vy~g~~~~~g~~VAVK~l~~~~~~~~~~f~~Ev~~~-------l~H~NIv~l~--g~~~~~~~~~LV~Ey~~~G  613 (678)
                      -.||+.... +|+.+++|+..... ...+++..|...+       +..+..+..-  ......+..+.++++++|.
T Consensus        36 N~vy~v~~~-dg~~~VlK~~rp~~-~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          36 NRVYQFQDE-DRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             SEEEEECCT-TCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             ceeEEEEcC-CCCEEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            479999886 88999999986542 1233444444321       1111111110  1123466788899999763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.16  E-value=0.047  Score=48.52  Aligned_cols=63  Identities=24%  Similarity=0.363  Sum_probs=40.5

Q ss_pred             CeEEEeeCCCC-CCccc----cchhhhcCcCCCeeccCCCcCCCC----CChhhhhhhhhhhhhccCCCCCC
Q 038969          380 PRIISLNLSSS-GISGE----IITYIFSLTSLQALDLSNNSLTGS----VPEFLSELHFLRVLNLTGNNLEG  442 (678)
Q Consensus       380 ~~l~~l~Ls~n-~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  442 (678)
                      +.++.|+|+++ .++..    +-..+...+.|+.|+|++|.++-.    +...+...+.|+.|+|++|.++.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            56778888764 45432    333455667788888888877632    23344455678888888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.11  E-value=0.083  Score=46.81  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=46.7

Q ss_pred             CeEEEeeCCCCCCccc----cchhhhcCcCCCeeccCCCcCCCCCC----hhhhhhhhhhhhhccCCCCC
Q 038969          380 PRIISLNLSSSGISGE----IITYIFSLTSLQALDLSNNSLTGSVP----EFLSELHFLRVLNLTGNNLE  441 (678)
Q Consensus       380 ~~l~~l~Ls~n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~iP----~~l~~l~~L~~L~ls~N~l~  441 (678)
                      +.|+.|+|++|.+...    +...+...+.|+.|+|++|.++..--    ..+...++|+.|+|++|.+.
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            4788999999999743    33446667899999999999986422    23444577999999988765

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.70  E-value=0.65  Score=46.71  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             hhcccCCceEEEEEEEcc-------CCEEEEEEEeccCchhhHHHHHHHHHH--hc-CCCCcccEEEEEEcCCeeEEEEe
Q 038969          539 KVIGKGGFGTVYHGYLEF-------NGTQVAVKMLSASSVQGYKQFQAEVQY--IV-HHKNLTTLVGYCDEDTNMGLIYE  608 (678)
Q Consensus       539 ~~IG~G~fG~Vy~g~~~~-------~g~~VAVK~l~~~~~~~~~~f~~Ev~~--~l-~H~NIv~l~g~~~~~~~~~LV~E  608 (678)
                      +.|+.|-.-.+|+.....       ..+.|.+++......  .....+|..+  .+ .+.=..++++++..    .+|+|
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~--~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~e  121 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE  121 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch--hhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEE
Confidence            467778889999998751       234677777653222  2233445444  23 24334577877642    68999


Q ss_pred             cCCCCCH
Q 038969          609 FMAKGNL  615 (678)
Q Consensus       609 y~~~GsL  615 (678)
                      |+++-.|
T Consensus       122 fi~g~~l  128 (395)
T d1nw1a_         122 YIPSRPL  128 (395)
T ss_dssp             CCCEEEC
T ss_pred             EeccccC
Confidence            9986433

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.69  E-value=0.47  Score=45.98  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             CCCCccccCCCCCC----CCCcEEEEeeCCcc
Q 038969          649 CCPHICESSSSSNP----HKNIVKLITFSIIK  676 (678)
Q Consensus       649 ~~~~iiHrDlk~~N----~~~~vkI~DFGlar  676 (678)
                      ...++||+|+.+.|    ++...-|+||+.|.
T Consensus       181 L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         181 LPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             SCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccccCCcchhhhhcccccceeEecccccc
Confidence            44589999999999    44445799999764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.59  E-value=0.074  Score=46.92  Aligned_cols=64  Identities=22%  Similarity=0.288  Sum_probs=44.0

Q ss_pred             CeEEEeeCCC-CCCccc----cchhhhcCcCCCeeccCCCcCCCCCC----hhhhhhhhhhhhhccCCCCCCC
Q 038969          380 PRIISLNLSS-SGISGE----IITYIFSLTSLQALDLSNNSLTGSVP----EFLSELHFLRVLNLTGNNLEGS  443 (678)
Q Consensus       380 ~~l~~l~Ls~-n~l~G~----ip~~~~~l~~L~~L~Ls~N~l~G~iP----~~l~~l~~L~~L~ls~N~l~G~  443 (678)
                      +.++.|+|++ +.++..    +-..+...+.|+.|+|++|.++..--    ..+...++|+.|++++|.++..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            5788888887 456532    33445677888999999988865432    3344567788888888887643