Citrus Sinensis ID: 039019

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKSQRFSSAGQQHQQQNTSVATEQSSMSCQVQI
cHHHHHHHHcccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
cHHHHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEccccccEEEEcHHHHHHHHHcHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccc
MLLNLLHVAgqnwgrvdnfrfnccficvdaanpvldRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHsvdrdnktsgptnatlnsrnkddkTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGwdihyvdstesiscksdevwtaqvvGPAVKTIRAFLSEDErlmpnlagmigtsvnsterdLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNlrksqrfssagqqhqqqntsvateqssmscqvqi
MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYhsvdrdnktsgptnatlnsrnkddktlKDCMRAILkssaddqlKVLLEEaidrvklntrrlvrcqkrrlnrlqtlfgwdihyVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAyeweqhkqgrrhrkRIYNLRKSqrfssagqqhqqqntsvateqssmscqvqi
MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKSQRFSSAGQQHQQQNTSVATEQSSMSCQVQI
**LNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSV**************************CMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQ***********************************************
MLLNL****************NCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTS*PTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSED************************QYVCKACGDKVLRGAYEWEQHKQ********************************************
MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKS******************************
MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYH*********************DDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSE**********************LWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKSQ*****************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLNLLHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKSQRFSSAGQQHQQQNTSVATEQSSMSCQVQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q9ZUX7466 tRNA dimethylallyltransfe yes no 0.869 0.545 0.561 2e-76
Q94ID2330 Adenylate isopentenyltran no no 0.503 0.445 0.324 3e-20
Q94ID1329 Adenylate isopentenyltran no no 0.510 0.452 0.297 5e-18
Q9LJL4330 Adenylate isopentenyltran no no 0.534 0.472 0.296 5e-17
Q93WC9336 Adenylate isopentenyltran no no 0.493 0.428 0.281 1e-16
Q5GHF7329 Adenylate isopentenyltran N/A no 0.530 0.471 0.303 6e-16
Q94ID3357 Adenylate isopentenyltran no no 0.520 0.425 0.289 1e-14
Q9C6L1342 Adenylate isopentenyltran no no 0.520 0.444 0.279 4e-14
Q9SB60318 Adenylate isopentenyltran no no 0.517 0.474 0.274 2e-13
Q80UN9467 tRNA dimethylallyltransfe yes no 0.698 0.436 0.256 7e-10
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 187/267 (70%), Gaps = 13/267 (4%)

Query: 10  GQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGL 69
            +NWG ++  RF+ C IC+DA   VLDRYVEQRVD M+DAGLLDEVYDIY   ADYTRGL
Sbjct: 213 AENWGCINASRFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTRGL 272

Query: 70  RQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLK 129
           RQ+IGVREFEDFL ++         S      L S + DDK +K+ +R IL    DD+L+
Sbjct: 273 RQSIGVREFEDFLKIH--------LSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLR 324

Query: 130 VLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGP 189
           ++LEEAIDRVKLNTRRL+R QKRR++RL+T+FGW+IHY+D+TE I  KS+E W AQVV P
Sbjct: 325 IMLEEAIDRVKLNTRRLLRRQKRRVSRLETVFGWNIHYIDATEYILSKSEESWNAQVVKP 384

Query: 190 AVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQG 249
           A + IR FL  +       +G   TS  S ERDLWTQYVC+ACG+K+LRG +EWE HKQG
Sbjct: 385 ASEIIRCFLETETE-----SGRDPTSGKSIERDLWTQYVCEACGNKILRGRHEWEHHKQG 439

Query: 250 RRHRKRIYNLRKSQRFSSAGQQHQQQN 276
           R HRKR    + SQ + +   Q  + N
Sbjct: 440 RTHRKRTTRHKNSQTYKNREVQEAEVN 466
Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2 Back     alignment and function description
>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis thaliana GN=IPT7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis thaliana GN=IPT8 PE=2 SV=1 Back     alignment and function description
>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1 Back     alignment and function description
>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1 Back     alignment and function description
>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=IPT1 PE=1 SV=2 Back     alignment and function description
>sp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis thaliana GN=IPT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4 PE=1 SV=1 Back     alignment and function description
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
255576383 453 tRNA delta(2)-isopentenylpyrophosphate t 0.873 0.562 0.656 2e-86
359479373 474 PREDICTED: tRNA dimethylallyltransferase 0.825 0.508 0.640 2e-81
388506538 476 unknown [Lotus japonicus] 0.852 0.523 0.596 1e-80
158702919 477 tRNA isopentenyltransferase [Lotus japon 0.852 0.522 0.596 3e-80
356541426 478 PREDICTED: tRNA dimethylallyltransferase 0.842 0.514 0.588 9e-80
357471911 481 tRNA isopentenyltransferase [Medicago tr 0.863 0.523 0.562 8e-76
18401518 466 tRNA dimethylallyltransferase 2 [Arabido 0.869 0.545 0.561 9e-75
19423903330 putative tRNA isopentenylpyrophosphate t 0.873 0.772 0.559 2e-74
297826175 470 predicted protein [Arabidopsis lyrata su 0.835 0.519 0.575 3e-73
356544704 448 PREDICTED: LOW QUALITY PROTEIN: tRNA dim 0.845 0.551 0.559 3e-72
>gi|255576383|ref|XP_002529084.1| tRNA delta(2)-isopentenylpyrophosphate transferase, putative [Ricinus communis] gi|223531496|gb|EEF33328.1| tRNA delta(2)-isopentenylpyrophosphate transferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/259 (65%), Positives = 203/259 (78%), Gaps = 4/259 (1%)

Query: 6   LHVAGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADY 65
           L  A +NWGR+DN RF+CCFICVDAA PVLD+YV QRVDCMIDAGLL EVYDIYN  ADY
Sbjct: 183 LGKAAENWGRIDNCRFDCCFICVDAATPVLDQYVGQRVDCMIDAGLLCEVYDIYNPYADY 242

Query: 66  TRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLN-SRNKDDKTLKDCMRAILKSSA 124
           TRGL+QAIGVREFED L  Y S +R+++ +  T+ +L      +DK LK+ MR IL+SS 
Sbjct: 243 TRGLQQAIGVREFEDVLRAYLSDNRNDEANDSTDKSLFLVSTNNDKMLKNNMREILRSSD 302

Query: 125 DDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTA 184
           D+++KVLL EAID+VKLNTRRLVR QKRR+ RL TLFGW+IHYVD+TESISCKSDE W A
Sbjct: 303 DNEVKVLLTEAIDKVKLNTRRLVRRQKRRITRLNTLFGWNIHYVDATESISCKSDESWAA 362

Query: 185 QVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWE 244
            VV PAV+ IR+FL  D+  +P L   +   +   +R+LWTQY+CKACGDKVLRGA+EWE
Sbjct: 363 HVVEPAVEIIRSFLRGDKSSVPVLEASVDAGM---KRNLWTQYICKACGDKVLRGAHEWE 419

Query: 245 QHKQGRRHRKRIYNLRKSQ 263
           QHKQGR HRKR    RK+Q
Sbjct: 420 QHKQGRGHRKRSSRFRKTQ 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479373|ref|XP_002263747.2| PREDICTED: tRNA dimethylallyltransferase 2 [Vitis vinifera] gi|297734839|emb|CBI17073.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506538|gb|AFK41335.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|158702919|gb|ABW77761.1| tRNA isopentenyltransferase [Lotus japonicus] Back     alignment and taxonomy information
>gi|356541426|ref|XP_003539178.1| PREDICTED: tRNA dimethylallyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357471911|ref|XP_003606240.1| tRNA isopentenyltransferase [Medicago truncatula] gi|355507295|gb|AES88437.1| tRNA isopentenyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18401518|ref|NP_565658.1| tRNA dimethylallyltransferase 2 [Arabidopsis thaliana] gi|75339063|sp|Q9ZUX7.2|IPT2_ARATH RecName: Full=tRNA dimethylallyltransferase 2; AltName: Full=Isopentenyl-diphosphate: tRNA isopentenyltransferase 2; Short=AtIPT2; Short=IPP transferase 2; Short=IPPT 2 gi|6006718|gb|AAF00582.1|AF109376_1 tRNA isopentenyl transferase [Arabidopsis thaliana] gi|14279058|dbj|BAB59042.1| tRNA isopentenyltransferase [Arabidopsis thaliana] gi|20197451|gb|AAC73024.2| putative tRNA isopentenylpyrophosphate transferase [Arabidopsis thaliana] gi|25054830|gb|AAN71905.1| putative tRNA isopentenylpyrophosphate transferase [Arabidopsis thaliana] gi|330252945|gb|AEC08039.1| tRNA dimethylallyltransferase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|19423903|gb|AAL87321.1| putative tRNA isopentenylpyrophosphate transferase [Arabidopsis thaliana] gi|62320646|dbj|BAD95312.1| tRNA isopentenyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297826175|ref|XP_002880970.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326809|gb|EFH57229.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356544704|ref|XP_003540787.1| PREDICTED: LOW QUALITY PROTEIN: tRNA dimethylallyltransferase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2042103466 IPT2 "tRNAisopentenyltransfera 0.866 0.542 0.567 4.5e-75
TAIR|locus:2179629330 IPT5 "isopentenyltransferase 5 0.229 0.203 0.507 3.3e-21
TAIR|locus:2088025329 IPT7 "isopentenyltransferase 7 0.253 0.224 0.472 6.1e-18
DICTYBASE|DDB_G0291528522 iptB "putative isopentenyltran 0.784 0.438 0.266 1.9e-17
TAIR|locus:2099177336 IPT3 "isopentenyltransferase 3 0.212 0.184 0.460 1.1e-16
TAIR|locus:2201292357 IPT1 "isopentenyltransferase 1 0.232 0.190 0.394 7.4e-13
TAIR|locus:2031205342 IPT6 "isopentenyltransferase 6 0.232 0.198 0.385 4.7e-12
UNIPROTKB|F6RA00467 TRIT1 "Uncharacterized protein 0.208 0.130 0.4 5.8e-11
UNIPROTKB|F1SMC5413 TRIT1 "Uncharacterized protein 0.208 0.147 0.4 6.3e-11
UNIPROTKB|F1Q3P4468 TRIT1 "Uncharacterized protein 0.208 0.130 0.4 1.4e-10
TAIR|locus:2042103 IPT2 "tRNAisopentenyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 151/266 (56%), Positives = 189/266 (71%)

Query:    11 QNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLR 70
             +NWG ++  RF+ C IC+DA   VLDRYVEQRVD M+DAGLLDEVYDIY   ADYTRGLR
Sbjct:   214 ENWGCINASRFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTRGLR 273

Query:    71 QAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKV 130
             Q+IGVREFEDFL ++ S     +T       L S + DDK +K+ +R IL    DD+L++
Sbjct:   274 QSIGVREFEDFLKIHLS-----ETCA---GHLTSLSNDDKVMKENLRKILNFPKDDKLRI 325

Query:   131 LLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPA 190
             +LEEAIDRVKLNTRRL+R QKRR++RL+T+FGW+IHY+D+TE I  KS+E W AQVV PA
Sbjct:   326 MLEEAIDRVKLNTRRLLRRQKRRVSRLETVFGWNIHYIDATEYILSKSEESWNAQVVKPA 385

Query:   191 VKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGR 250
              + IR FL  +       +G   TS  S ERDLWTQYVC+ACG+K+LRG +EWE HKQGR
Sbjct:   386 SEIIRCFLETETE-----SGRDPTSGKSIERDLWTQYVCEACGNKILRGRHEWEHHKQGR 440

Query:   251 RHRKRIYNLRKSQRFSSAGQQHQQQN 276
              HRKR    + SQ + +   Q  + N
Sbjct:   441 THRKRTTRHKNSQTYKNREVQEAEVN 466
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008033 "tRNA processing" evidence=IEA
GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IDA
GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA
GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
TAIR|locus:2179629 IPT5 "isopentenyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088025 IPT7 "isopentenyltransferase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291528 iptB "putative isopentenyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2099177 IPT3 "isopentenyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201292 IPT1 "isopentenyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031205 IPT6 "isopentenyltransferase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F6RA00 TRIT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMC5 TRIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3P4 TRIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.750.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IX.724.1
annotation not avaliable (450 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
PLN02748468 PLN02748, PLN02748, tRNA dimethylallyltransferase 1e-126
PLN02165334 PLN02165, PLN02165, adenylate isopentenyltransfera 3e-28
PRK00091307 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp 1e-07
COG0324308 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph 5e-06
pfam01715253 pfam01715, IPPT, IPP transferase 6e-06
TIGR00174287 TIGR00174, miaA, tRNA dimethylallyltransferase 2e-05
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase Back     alignment and domain information 
 Score =  368 bits (946), Expect = e-126
 Identities = 161/257 (62%), Positives = 195/257 (75%), Gaps = 13/257 (5%)

Query: 9   AGQNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRG 68
           A +NWGR+ N RF+CCFICVDA   VLDRYV QRVDCMIDAGLLDEVYDIY+  ADYTRG
Sbjct: 214 AAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPGADYTRG 273

Query: 69  LRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQL 128
           LRQAIGVREFEDFL +Y S +         N  L S + +DK +K+  R IL    DD+L
Sbjct: 274 LRQAIGVREFEDFLRLYLSRNE--------NGELTSSSNNDKVMKENSRKILNFPHDDKL 325

Query: 129 KVLLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISCKSDEVWTAQVVG 188
           K+LL+EAID+VKLNTRRLVR QKRRL+RL T+FGW+IHY+D+TE+I CKS+E W A+VV 
Sbjct: 326 KILLDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAILCKSEESWNAKVVK 385

Query: 189 PAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQ 248
           PAV+ +R FLS+D    P+      +S  S  R+LWTQYVC+ACG+KVLRGA+EWEQHKQ
Sbjct: 386 PAVEIVRRFLSDDTSSGPDA-----SSGKSVSRELWTQYVCEACGNKVLRGAHEWEQHKQ 440

Query: 249 GRRHRKRIYNLRKSQRF 265
           GR HRKR+  L++ Q  
Sbjct: 441 GRGHRKRVQRLKQKQTQ 457

Length = 468
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase Back     alignment and domain information
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase Back     alignment and domain information
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PLN02748468 tRNA dimethylallyltransferase 100.0
PLN02165334 adenylate isopentenyltransferase 100.0
KOG1384348 consensus tRNA delta(2)-isopentenylpyrophosphate t 99.98
PF01715253 IPPT: IPP transferase; InterPro: IPR002627 tRNA is 99.97
TIGR00174287 miaA tRNA isopentenyltransferase (miaA). Catalyzes 99.97
PRK00091307 miaA tRNA delta(2)-isopentenylpyrophosphate transf 99.96
PRK14729300 miaA tRNA delta(2)-isopentenylpyrophosphate transf 99.96
COG0324308 MiaA tRNA delta(2)-isopentenylpyrophosphate transf 99.95
PLN02840421 tRNA dimethylallyltransferase 99.94
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 98.27
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 98.21
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 97.84
PF0622038 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi 96.18
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 95.35
KOG3408129 consensus U1-like Zn-finger-containing protein, pr 95.26
smart0058649 ZnF_DBF Zinc finger in DBF-like proteins. 94.97
KOG4727193 consensus U1-like Zn-finger protein [General funct 94.22
PF0753549 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc 94.09
PF01745233 IPT: Isopentenyl transferase; InterPro: IPR002648 94.02
KOG0227 222 consensus Splicing factor 3a, subunit 2 [RNA proce 93.52
KOG3032 264 consensus Uncharacterized conserved protein [Funct 92.64
PF11931196 DUF3449: Domain of unknown function (DUF3449); Int 91.39
PF0009623 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 91.0
COG5112126 UFD2 U1-like Zn-finger-containing protein [General 90.55
COG5188 470 PRP9 Splicing factor 3a, subunit 3 [RNA processing 88.83
KOG2785 390 consensus C2H2-type Zn-finger protein [General fun 87.95
PF1391227 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 87.36
PF1389424 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP 86.88
>PLN02748 tRNA dimethylallyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-54  Score=427.92  Aligned_cols=252  Identities=61%  Similarity=1.008  Sum_probs=203.1

Q ss_pred             cCCccccccCCC---------CCCCccEEEEEEeCChHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCCCCccccccH
Q 039019            5 LLHVAGQNWGRV---------DNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGV   75 (292)
Q Consensus         5 ~~~~~~~~~~~~---------~~~ry~~l~~wL~~dr~~L~~RLd~RVd~Ml~~GLldEV~~L~~~~~~~~~Gi~qaIGy   75 (292)
                      .+|++.+.|...         +.++|++++|||++|+++|++||++|||.||++||++||+.|++.+.+++.|+||||||
T Consensus       201 ~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~GlleEv~~l~~~~~~~~~~~~qaIGy  280 (468)
T PLN02748        201 TTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPGADYTRGLRQAIGV  280 (468)
T ss_pred             HHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCCCCcccceeEcH
Confidence            468888876421         24689999999999999999999999999999999999999999876788999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCcccccccccchhhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 039019           76 REFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLN  155 (292)
Q Consensus        76 KEf~~yL~~~~~~~~~~~~~~~~~~~~~s~~~~~k~~~~~~~~~l~~~~~~~~~~~~~eaie~lk~~TRqYAKRQ~~Wir  155 (292)
                      |||.+||....+..++++    +    .+...+++.++..++..+..+.+++++.++++||+.||.+||||||||++||+
T Consensus       281 kE~~~yL~~~~~~~~~g~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~Tr~yAKRQ~tw~~  352 (468)
T PLN02748        281 REFEDFLRLYLSRNENGE----L----TSSSNNDKVMKENSRKILNFPHDDKLKILLDEAIDQVKLNTRRLVRRQKRRLH  352 (468)
T ss_pred             HHHHHHHHhccccccccc----c----cccccccchhhhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999985433221111    0    01111223455566677777777777779999999999999999999999999


Q ss_pred             hhhcccCceeEEecCCCcccccchhhHhhhhhcHHHHHHHHHhccCCCCCCccccCCCCCCCCcccCcccccccccCCCc
Q 039019          156 RLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDK  235 (292)
Q Consensus       156 ~~~~~~~~~i~~lD~t~~~~~~~~~~W~~~V~~pa~~iv~~Fl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Ce~C~~~  235 (292)
                      +.....++.+||||+|++..+++.+.|++.|++||++||.+||++.+...+.. +..  . . ...+.|++|+||+|+++
T Consensus       353 rl~~~~~~~i~~lD~t~~~~~~~~~~W~~~V~~pa~~iv~~fL~~~~~~~~~~-~~~--~-~-~~~~~~~~~~Ce~C~~~  427 (468)
T PLN02748        353 RLNTVFGWNIHYIDATEAILCKSEESWNAKVVKPAVEIVRRFLSDDTSSGPDA-SSG--K-S-VSRELWTQYVCEACGNK  427 (468)
T ss_pred             hhhhcccCCeeEeechhhhhhccHhHHHHHhHHHHHHHHHHHHcCCCCCCcCc-ccc--c-c-ccccccccccccCCCCc
Confidence            87555568999999999876677888999999999999999999977433322 211  1 1 25667999999999755


Q ss_pred             eeeCHHHHHHHhhchHHHHHhHHHHHhhhhhhhh
Q 039019          236 VLRGAYEWEQHKQGRRHRKRIYNLRKSQRFSSAG  269 (292)
Q Consensus       236 ~~~Ge~~W~~HlkSr~Hrk~~k~~~k~~~~~~~~  269 (292)
                      +++|+++|++|++||+||+++++++|++.....+
T Consensus       428 ~~~G~~eW~~Hlksr~Hk~~~~~~~k~~~~~~~~  461 (468)
T PLN02748        428 VLRGAHEWEQHKQGRGHRKRVQRLKQKQTQKNRL  461 (468)
T ss_pred             ccCCHHHHHHHhcchHHHHHHhHHHhhhhccchh
Confidence            9999999999999999999999999998876654

>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2 Back     alignment and domain information
>TIGR00174 miaA tRNA isopentenyltransferase (miaA) Back     alignment and domain information
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional Back     alignment and domain information
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02840 tRNA dimethylallyltransferase Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification] Back     alignment and domain information
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins Back     alignment and domain information
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] Back     alignment and domain information
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification] Back     alignment and domain information
>KOG3032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only] Back     alignment and domain information
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B Back     alignment and domain information
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3a8t_A339 Plant Adenylate Isopentenyltransferase In Complex W 4e-17
3eph_A409 Crystallographic Snapshots Of Eukaryotic Dimethylal 1e-05
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp Length = 339 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 43/198 (21%)
Query: 18  NFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANAD------YTR-GLR 70
             R++CCF+ VD +  VL  Y+ +RVD M++ G+ DE+ + Y+   +       TR GLR
Sbjct: 170 ELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLR 229
Query: 71  QAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKV 130
           +AIGV EF+ +   +   D + +  G                +D +R           + 
Sbjct: 230 KAIGVPEFDRYFEKFRPGDVEGEDPG----------------RDRVR-----------RG 262
Query: 131 LLEEAIDRVKLNTRRLVRCQKRRLNRLQTLFGWDIHYVDSTESISC--------KSDEVW 182
             EEA+  +K NT  L + Q  ++ RL+   GWD+  +D+TES           K  E+W
Sbjct: 263 AFEEAVRAIKENTCHLAKRQIGKILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIW 321
Query: 183 TAQVVGPAVKTIRAFLSE 200
             QV+ P+VK +  FL E
Sbjct: 322 EKQVLEPSVKIVSRFLDE 339
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 3e-39
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 2e-35
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 2e-09
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 2e-09
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 4e-09
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409 Back     alignment and structure
 Score =  140 bits (356), Expect = 3e-39
 Identities = 54/269 (20%), Positives = 90/269 (33%), Gaps = 69/269 (25%)

Query: 18  NFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEV---YDIYNANA----DYTRGLR 70
             +F+  F+ + +    L + ++ RVD M++ G L E+   Y+ Y+ N         G+ 
Sbjct: 184 TLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVW 243

Query: 71  QAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKV 130
           Q IG +EF  +L+                                          D   V
Sbjct: 244 QVIGFKEFLPWLT---------------------------------------GKTDDNTV 264

Query: 131 LLEEAIDRVKLNTRRLVRCQKRRL----NRLQTLFGWDIHYVDSTESISCKSDEVWTAQV 186
            LE+ I+R+K  TR+     KR++      L      DI+ +D+T+         W    
Sbjct: 265 KLEDCIERMKTRTRQYA---KRQVKWIKKMLIPDIKGDIYLLDATDL------SQWDTNA 315

Query: 187 VGPAVKTIRAFLSEDERLMPNLAG-----MIGTSVNSTERDLWTQYVCKACGDK-----V 236
              A+     F+S                +        + D WT Y C  C +      V
Sbjct: 316 SQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVV 375

Query: 237 LRGAYEWEQHKQGRRHRKRIYNLRKSQRF 265
             G   W+ H   RRH+  +    +   F
Sbjct: 376 AIGEKYWKIHLGSRRHKSNLKRNTRQADF 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339 Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322 Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323 Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340 Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 100.0
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 100.0
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 99.97
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 99.97
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 99.97
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 99.96
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 99.23
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 97.41
1zr9_A124 Zinc finger protein 593; DNA binding, structural g 96.92
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 95.79
3cw1_L77 U1 small nuclear ribonucleoprotein C; PRE-mRNA spl 95.17
4dgw_A402 PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A 88.01
1ard_A29 Yeast transcription factor ADR1; transcription reg 82.16
2kvf_A28 Zinc finger and BTB domain-containing protein 32; 81.6
1rik_A29 E6APC1 peptide; E6-binding domain, zinc finger, hu 81.36
1znf_A27 31ST zinc finger from XFIN; zinc finger DNA bindin 81.3
2kvg_A27 Zinc finger and BTB domain-containing protein 32; 81.19
2kvh_A27 Zinc finger and BTB domain-containing protein 32; 80.39
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
Probab=100.00  E-value=4e-52  Score=404.24  Aligned_cols=216  Identities=23%  Similarity=0.373  Sum_probs=177.4

Q ss_pred             cCCccccccCC--CCCCCccEEEEEEeCChHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCC-------CCCCCccccccH
Q 039019            5 LLHVAGQNWGR--VDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANA-------DYTRGLRQAIGV   75 (292)
Q Consensus         5 ~~~~~~~~~~~--~~~~ry~~l~~wL~~dr~~L~~RLd~RVd~Ml~~GLldEV~~L~~~~~-------~~~~Gi~qaIGy   75 (292)
                      .+|++.+.|..  ...++|++++|||++|+++|++||++|||.||++||++||+.|++.+.       +++.|+||||||
T Consensus       169 ~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~~~~~~~~aIGY  248 (409)
T 3eph_A          169 KTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGF  248 (409)
T ss_dssp             HHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGGTTSGGGGSTTT
T ss_pred             HHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhccccccccccccccchhcccH
Confidence            47888888863  345789999999999999999999999999999999999999998632       135789999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCcccccccccchhhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 039019           76 REFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLN  155 (292)
Q Consensus        76 KEf~~yL~~~~~~~~~~~~~~~~~~~~~s~~~~~k~~~~~~~~~l~~~~~~~~~~~~~eaie~lk~~TRqYAKRQ~~Wir  155 (292)
                      |||++||.+....                                       .+..+++|++.++.+||||||||+||||
T Consensus       249 kE~~~yL~g~~~~---------------------------------------~e~~l~eaie~ik~~TRqyAKRQ~TWfR  289 (409)
T 3eph_A          249 KEFLPWLTGKTDD---------------------------------------NTVKLEDCIERMKTRTRQYAKRQVKWIK  289 (409)
T ss_dssp             GGGGGGGC----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcc---------------------------------------cccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999984210                                       0014899999999999999999999999


Q ss_pred             hhh-cccCceeEEecCCCcccccchhhHhhhhhcHHHHHHHHHhccCCCCCCccccCCC-----CCCCCcccCccccccc
Q 039019          156 RLQ-TLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKTIRAFLSEDERLMPNLAGMIG-----TSVNSTERDLWTQYVC  229 (292)
Q Consensus       156 ~~~-~~~~~~i~~lD~t~~~~~~~~~~W~~~V~~pa~~iv~~Fl~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~C  229 (292)
                      +.+ ...++++||||+|++..      |++.|.+||++||..||+|++.|.|...+...     ...+..+.+.|++|+|
T Consensus       290 ~~~~~~~~~~i~~lD~t~~~~------W~~~V~~pa~~iv~~fl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~C  363 (409)
T 3eph_A          290 KMLIPDIKGDIYLLDATDLSQ------WDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTC  363 (409)
T ss_dssp             HTHHHHTTTCEEEEECSCTTT------CTTTTHHHHHHHHHHHHTTCCCCSCSSCGGGGGGGSGGGTGGGSCCCCCEEEE
T ss_pred             hhcccccCCceEEEcCCChhH------HHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHhccccccccccccccceeC
Confidence            985 33345799999999976      99999999999999999998877665432111     1111234678999999


Q ss_pred             ccCCCc-----eeeCHHHHHHHhhchHHHHHhHHHHHhhhh
Q 039019          230 KACGDK-----VLRGAYEWEQHKQGRRHRKRIYNLRKSQRF  265 (292)
Q Consensus       230 e~C~~~-----~~~Ge~~W~~HlkSr~Hrk~~k~~~k~~~~  265 (292)
                      |+|+++     +++|+.+|++|++||+||+++++++||++.
T Consensus       364 e~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~~  404 (409)
T 3eph_A          364 NVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADF  404 (409)
T ss_dssp             EEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            999632     999999999999999999999999999875
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Back     alignment and structure
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Back     alignment and structure
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A Back     alignment and structure
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1 Back     alignment and structure
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1zr9a167 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 0.003
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 226 QYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRK 261
            + C AC  +    +   + H + + H+KR+  L  
Sbjct: 15  LHRCLAC-ARYFIDSTNLKTHFRSKDHKKRLKQLSV 49

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1zr9a167 Zinc finger protein 593, ZNF593 {Human (Homo sapie 98.23
d1zu1a255 dsRNA-binding protein ZFa (ZNF346, JAZ) {African c 96.4
d1bboa229 Enhancer binding protein {Human (Homo sapiens) [Ta 93.24
d1zu1a172 dsRNA-binding protein ZFa (ZNF346, JAZ) {African c 93.11
d2vrda161 Spliceosomal protein U1C {Human (Homo sapiens) [Ta 87.2
d1sp1a_29 Transcription factor sp1 {Human (Homo sapiens) [Ta 84.42
d1a1ia328 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 81.25
d2adra129 ADR1 {Synthetic, based on Saccharomyces cerevisiae 80.91
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.4e-07  Score=66.79  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             ccccccccCCCceeeCHHHHHHHhhchHHHHHhHHHHHh
Q 039019          224 WTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKS  262 (292)
Q Consensus       224 ~~~~~Ce~C~~~~~~Ge~~W~~HlkSr~Hrk~~k~~~k~  262 (292)
                      -.+|+|-+| ++.|..+.+|+.|.+||+||+++|.++..
T Consensus        13 ~gqfYCv~C-~K~F~se~~l~~H~ksKkHKrrvk~L~~~   50 (67)
T d1zr9a1          13 GGLHRCLAC-ARYFIDSTNLKTHFRSKDHKKRLKQLSVE   50 (67)
T ss_dssp             GGCSEETTT-TEECSSHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred             CCEEecccc-cCccCCHHHHHHHHcccHHHHHHHHhccC
Confidence            368999999 69999999999999999999999998653
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure