Citrus Sinensis ID: 039045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccEEEEcccEEEEEEEEEEcccEEEEcccccccccccccccccccccccEEccccEEEEcEEEccccEEccccEEccccccccEEEccccEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccEEccEEEEEcccEEEEEEEEEEcccEEEEEEEEccccccccccccccEccccEEccccEEccccEEccccEEccccEEcccEcccEEEEEccEEEEccccccccccccccccccccHHHHHHccccc
Coil and Loop (DISEMBL)
mpagelrypsparnltmethaagddEAWVWAQIKAEARrdaesepaLASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFldtfssdpALRAAAVADLRAarvrdpacvsfshcllnykgFLACQAHRVAHKLWTQSRRPLALALQSRIsdvfavdihpaakigkgilfdhatgvvIGETAVIGNNVSILHHVtlggtgkasgdrhpkigdgvligagatilgnvkigegakvgagsvvlidvparatavgnparlvggkektssneecpgesmdhtsfISEWSDYII
Flexible Loop (DISEMBL)
mpagelrypsparnLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGgtgkasgdrhPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVparatavgnparlvggkektssneecpgesmdhtsfisewsdyii
Low Complexity Region (SEG)
MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCsstllstllydlfldtfssdpalraaavadlraarvrdpaCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII
Disordered region (IsUnstruct)
************************DEAWVWAQIKA**********ALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG*************************************
Disordered Region (DISOPRED)
***************************WVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG***************MDHTSFISEWSDYII
Disordered Region (DISEMBL)
MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKA*********PALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV****************MDHTSFISEWSDYII
Disordered Region (DISPRO)
************************DEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK**************DHTSFISEWSDYII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q42538	312	Serine acetyltransferase	yes	no	0.996	0.942	0.819	1e-140
Q0DGG8	340	Probable serine acetyltra	yes	no	0.922	0.8	0.798	1e-123
Q8W0E4	303	Probable serine acetyltra	no	no	0.905	0.881	0.797	1e-119
Q42588	314	Serine acetyltransferase	no	no	0.935	0.878	0.601	7e-97
Q39218	391	Serine acetyltransferase	no	no	0.905	0.682	0.617	1e-95
Q10S58	354	Probable serine acetyltra	no	no	0.864	0.720	0.562	9e-80
Q8W2B8	355	Serine acetyltransferase	no	no	0.847	0.704	0.576	2e-77
Q8S895	323	Serine acetyltransferase	no	no	0.847	0.773	0.568	5e-74
Q10QH1	315	Probable serine acetyltra	no	no	0.881	0.825	0.582	1e-73
P0A9D7	273	Serine acetyltransferase	yes	no	0.881	0.952	0.522	2e-72

>sp|Q42538|SAT5_ARATH Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/310 (81%), Positives = 271/310 (87%), Gaps = 16/310 (5%)

Query: 2   PAGELRYPSPAR-NLTMETHAAGDDEAW--------------VWAQIKAEARRDAESEPA 46
           PAGELR+ SP++  L+  T +   + A               +W QIKAEARRDAE+EPA
Sbjct: 3   PAGELRHQSPSKEKLSSVTQSDEAEAASAAISAAAADAEAAGLWTQIKAEARRDAEAEPA 62

Query: 47  LASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLR 106
           LASYLYSTILSHSSLERS++FHLGNKLCSSTLLSTLLYDLFL+TFSSDP+LR A VADLR
Sbjct: 63  LASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLRNATVADLR 122

Query: 107 AARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHP 166
           AARVRDPAC+SFSHCLLNYKGFLA QAHRV+HKLWTQSR+PLALAL SRISDVFAVDIHP
Sbjct: 123 AARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKPLALALHSRISDVFAVDIHP 182

Query: 167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
           AAKIGKGIL DHATGVV+GETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDG LIGAGA
Sbjct: 183 AAKIGKGILLDHATGVVVGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGCLIGAGA 242

Query: 227 TILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK-TSSNEECPGESMDHTS 285
           TILGNVKIG GAKVGAGSVVLIDVP R TAVGNPARLVGGKEK T  +EECPGESMDHTS
Sbjct: 243 TILGNVKIGAGAKVGAGSVVLIDVPCRGTAVGNPARLVGGKEKPTIHDEECPGESMDHTS 302

Query: 286 FISEWSDYII 295
           FISEWSDYII
Sbjct: 303 FISEWSDYII 312

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 0

>sp|Q0DGG8|SAT5_ORYSJ Probable serine acetyltransferase 5 OS=Oryza sativa subsp. japonica GN=SAT5 PE=2 SV=2

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/273 (79%), Positives = 245/273 (89%), Gaps = 1/273 (0%)

Query: 24  DDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLL 83
           D+E+WVW+QIKAEARRDA++EPALAS+LY+T+LSH SL RS++FHL NKLCSSTLLSTLL
Sbjct: 68  DEESWVWSQIKAEARRDADAEPALASFLYATVLSHPSLPRSISFHLANKLCSSTLLSTLL 127

Query: 84  YDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQ 143
           YDLFL +F++ P+LRAA VADL AAR RDPACV FS CLLN+KGFLA QAHRV+H LW Q
Sbjct: 128 YDLFLASFTAHPSLRAAVVADLLAARSRDPACVGFSQCLLNFKGFLAIQAHRVSHVLWAQ 187

Query: 144 SRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG 203
            RRPLALALQSR++DVFAVDIHPAA +GKGIL DHATGVVIGETAV+G+NVSILHHVTLG
Sbjct: 188 QRRPLALALQSRVADVFAVDIHPAAVVGKGILLDHATGVVIGETAVVGDNVSILHHVTLG 247

Query: 204 GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 263
           GTGKA GDRHPKIGDGVLIGAGATILGNVKIG GAK+GAGSVVLIDVPAR TAVGNPARL
Sbjct: 248 GTGKAVGDRHPKIGDGVLIGAGATILGNVKIGAGAKIGAGSVVLIDVPARNTAVGNPARL 307

Query: 264 VGGKE-KTSSNEECPGESMDHTSFISEWSDYII 295
           +G K  +   +E+ PGESMDHTSFI +WSDY I
Sbjct: 308 IGRKNGEVEKDEDMPGESMDHTSFIRQWSDYTI 340

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q8W0E4|SAT1_ORYSJ Probable serine acetyltransferase 1 OS=Oryza sativa subsp. japonica GN=SAT1 PE=2 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/271 (79%), Positives = 241/271 (88%), Gaps = 4/271 (1%)

Query: 25  DEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLY 84
           DE+WVW+QIKAEARRDA++EPALAS+LY+T+LSH SL+RSLAFHL NKLCSSTLLSTLLY
Sbjct: 37  DESWVWSQIKAEARRDADAEPALASFLYATVLSHPSLDRSLAFHLANKLCSSTLLSTLLY 96

Query: 85  DLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQS 144
           DLF+ + ++ P LRAA VADL AAR RDPACV FSHCLLNYKGFLA QA RVAH LW Q 
Sbjct: 97  DLFVASLAAHPTLRAAVVADLLAARSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQD 156

Query: 145 RRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG 204
           RR LALALQSR+++VFAVDIHPAA IGKG+L DHATGVVIGETAVIG+NVSILHHVTLGG
Sbjct: 157 RRALALALQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGG 216

Query: 205 TGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           TGKA GDRHPKIGDGVLIGAGATILGNV+IG GAK+GAGS+VLIDVP R TAVGNPARL+
Sbjct: 217 TGKAVGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLL 276

Query: 265 GGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GGK+     ++ PGESMDHTSFI +WSDY I
Sbjct: 277 GGKK----GDDMPGESMDHTSFIQQWSDYSI 303

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q42588|SAT1_ARATH Serine acetyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=SAT1 PE=1 SV=2

 Score =  353 bits (906), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 166/276 (60%), Positives = 211/276 (76%)

Query: 20  HAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLL 79
           H   +D+  VW ++  EA+ D + EP L++Y Y++I SH SLE +LA  L  KL +  L 
Sbjct: 39  HTQIEDDDDVWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHILSVKLSNLNLP 98

Query: 80  STLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHK 139
           S  L++LF+      P +  +   DL A + RDPAC+S+ HC L +KGFLACQAHR+AH 
Sbjct: 99  SNTLFELFISVLEESPEIIESTKQDLIAVKERDPACISYVHCFLGFKGFLACQAHRIAHT 158

Query: 140 LWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHH 199
           LW Q+R+ +AL +Q+R+S+ FAVDIHP AKIGKGIL DHATGVVIGETAV+G+NVSILH 
Sbjct: 159 LWKQNRKIVALLIQNRVSESFAVDIHPGAKIGKGILLDHATGVVIGETAVVGDNVSILHG 218

Query: 200 VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGN 259
           VTLGGTGK SGDRHPKIGDGVLIGAG+ ILGN+ IGEGAK+G+GSVV+ DVPAR TAVGN
Sbjct: 219 VTLGGTGKQSGDRHPKIGDGVLIGAGSCILGNITIGEGAKIGSGSVVVKDVPARTTAVGN 278

Query: 260 PARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           PARL+GGKE    +++ P  +MD TS+++EWSDY+I
Sbjct: 279 PARLIGGKENPRKHDKIPCLTMDQTSYLTEWSDYVI 314

May be involved in detoxification process by mediating the production of glutathione.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3

 Score =  349 bits (895), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 165/267 (61%), Positives = 206/267 (77%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VWA+I+ EA+ D   EP +++Y +++I+S  SLE +LA  L  KL +  L S  L+DLF 
Sbjct: 125 VWAKIREEAKSDIAKEPIVSAYYHASIVSQRSLEAALANTLSVKLSNLNLPSNTLFDLFS 184

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                +P +  +   DL A + RDPAC+S+ HC L++KGFLACQAHR+AH+LWTQ R+ L
Sbjct: 185 GVLQGNPDIVESVKLDLLAVKERDPACISYVHCFLHFKGFLACQAHRIAHELWTQDRKIL 244

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL +Q+R+S+ FAVD HP AKIG GIL DHAT +VIGETAV+GNNVSILH+VTLGGTGK 
Sbjct: 245 ALLIQNRVSEAFAVDFHPGAKIGTGILLDHATAIVIGETAVVGNNVSILHNVTLGGTGKQ 304

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
            GDRHPKIGDGVLIGAG  ILGN+ IGEGAK+GAGSVVL DVP R TAVGNPARL+GGK+
Sbjct: 305 CGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPARLLGGKD 364

Query: 269 KTSSNEECPGESMDHTSFISEWSDYII 295
              ++++ PG +MD TS ISEWSDY+I
Sbjct: 365 NPKTHDKIPGLTMDQTSHISEWSDYVI 391

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q10S58|SAT2_ORYSJ Probable serine acetyltransferase 2 OS=Oryza sativa subsp. japonica GN=SAT2 PE=2 SV=1

 Score =  296 bits (759), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 195/263 (74%), Gaps = 8/263 (3%)

Query: 21  AAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLS 80
           AAGD    +W  +K+EA+ +AE EP L+S+LY+++LSH  LER+L+F L N+L   TLL+
Sbjct: 75  AAGDP---IWEAVKSEAKSEAEKEPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLA 131

Query: 81  TLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKL 140
           T L D+F D   ++  +R +   D +A + RDPAC  +S  LL  KG+ + Q++R+AH L
Sbjct: 132 TQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVL 191

Query: 141 WTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHV 200
           W Q R+ LALALQSRIS+VFAVDIHPAA+IG+GIL DH TG+VIGETA++GN VS++  V
Sbjct: 192 WNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGV 251

Query: 201 TLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260
           TLGGTGK +GDRHPKIG G L+GAGATILGN+ +GEGA + AGS+VL DVP  + AVGNP
Sbjct: 252 TLGGTGKENGDRHPKIGQGALLGAGATILGNINVGEGAMIAAGSLVLKDVPPHSMAVGNP 311

Query: 261 ARLVGGKEKTSSNEECPGESMDH 283
           A++VG K+K     E P  +M H
Sbjct: 312 AKVVGYKDK-----EDPSLTMKH 329

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q8W2B8|SAT4_ARATH Serine acetyltransferase 4 OS=Arabidopsis thaliana GN=SAT4 PE=1 SV=1

 Score =  288 bits (738), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/255 (57%), Positives = 194/255 (76%), Gaps = 5/255 (1%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           +W  I+ EA+ +AE EP L+S+LY++ILSH  LE++L+F L N+L + TLL+T L D+F 
Sbjct: 73  IWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFC 132

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           +    D  ++++   D++A + RDPAC+S+S  +L+ KG+LA QA+RVAHKLW Q R+ L
Sbjct: 133 NVMVHDRGIQSSIRLDVQAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLL 192

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           ALALQSR+S+VF +DIHPAA+IGKGIL DH TGVVIGETAVIG+ VSILH VTLGGTGK 
Sbjct: 193 ALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKE 252

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           +GDRHP IGDG L+GA  TILGN+KIG GA V AGS+VL DVP+ +   GNPA+L+G   
Sbjct: 253 TGDRHPNIGDGALLGACVTILGNIKIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIG--- 309

Query: 269 KTSSNEECPGESMDH 283
               +E+ P  +M+H
Sbjct: 310 --FVDEQDPSMTMEH 322

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q8S895|SAT2_ARATH Serine acetyltransferase 2 OS=Arabidopsis thaliana GN=SAT2 PE=1 SV=2

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/255 (56%), Positives = 188/255 (73%), Gaps = 5/255 (1%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           +W  I+ EA+ +AE EP L+S+LY+ IL+H  LE++L F L N+L + TLL+T L D+F 
Sbjct: 36  IWDAIREEAKLEAEKEPILSSFLYAGILAHDCLEQALGFVLANRLQNPTLLATQLLDIFY 95

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                D  ++++   DL+A + RDPAC+S+S  +L+ KG+ A QA+RVAHKLW + R+ L
Sbjct: 96  GVMMHDKGIQSSIRHDLQAFKDRDPACLSYSSAILHLKGYHALQAYRVAHKLWNEGRKLL 155

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           ALALQSRIS+VF +DIHPAA+IG+GIL DH TGVVIGETAVIGN VSILH VTLGGTGK 
Sbjct: 156 ALALQSRISEVFGIDIHPAARIGEGILLDHGTGVVIGETAVIGNGVSILHGVTLGGTGKE 215

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           +GDRHPKIG+G L+GA  TILGN+ IG GA V AGS+VL DVP+ +   GNPA+L+   E
Sbjct: 216 TGDRHPKIGEGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSVVAGNPAKLIRVME 275

Query: 269 KTSSNEECPGESMDH 283
                E+ P  +M H
Sbjct: 276 -----EQDPSLAMKH 285

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q10QH1|SAT4_ORYSJ Probable serine acetyltransferase 4 OS=Oryza sativa subsp. japonica GN=SAT4 PE=2 SV=1

 Score =  276 bits (706), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 184/268 (68%), Gaps = 8/268 (2%)

Query: 28  WVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLC-SSTLLSTLLYDL 86
           +VW  ++AEA+ DA+ EP L  + +  +LS  SLE +LA  L  KLC    L    L DL
Sbjct: 53  YVWDVLRAEAQDDADDEPLLRKFYHDLVLSRPSLESALASLLAAKLCIPGALPQDQLRDL 112

Query: 87  FLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRR 146
                ++ P    AA ADL AAR RDPAC    HC L YKGFLA QAHR AH LW+ +RR
Sbjct: 113 LAGALAAHPEAGRAARADLVAARDRDPACAKMVHCFLYYKGFLALQAHRAAHALWSDNRR 172

Query: 147 PLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTG 206
             AL LQSR S+VF VDIHP A+IG GIL DHATGVVIGETAV+G +VSILH VTLGGTG
Sbjct: 173 APALLLQSRASEVFGVDIHPGARIGCGILLDHATGVVIGETAVVGYDVSILHGVTLGGTG 232

Query: 207 KASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266
           K SGDRHPK+GDGVLIGAGA++LGNV IG+GAK+GAG+VVL DV    TAVGNPA+ + G
Sbjct: 233 KESGDRHPKVGDGVLIGAGASVLGNVHIGDGAKIGAGAVVLRDVADGTTAVGNPAKPIIG 292

Query: 267 KEKTSSN--EECPGESMDHTSFISEWSD 292
           K+       EE PG +M+       WSD
Sbjct: 293 KKAAPQRRPEELPGVTMEQ-----RWSD 315

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|P0A9D7|CYSE_SHIFL Serine acetyltransferase OS=Shigella flexneri GN=cysE PE=3 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/266 (52%), Positives = 186/266 (69%), Gaps = 6/266 (2%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW  IKAEAR  A+ EP LAS+ ++T+L H +L  +L++ L NKL S  + +  + ++  
Sbjct: 9   VWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVE 68

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           + +++DP + A+A  D++A R RDPA   +S  LL  KGF A QA+R+ H LW Q RR L
Sbjct: 69  EAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRAL 128

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           A+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+
Sbjct: 129 AIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKS 188

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
            GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG   
Sbjct: 189 GGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVG--- 245

Query: 269 KTSSNEECPGESMD-HTSFISEWSDY 293
               + + P   MD H + I+   +Y
Sbjct: 246 --KPDSDKPSMDMDQHFNGINHTFEY 269

Shigella flexneri (taxid: 623)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224135619	294	predicted protein [Populus trichocarpa]	0.989	0.993	0.894	1e-148
225444969	306	PREDICTED: serine acetyltransferase 5-li	0.983	0.947	0.864	1e-146
147841681	290	hypothetical protein VITISV_002361 [Viti	0.983	1.0	0.861	1e-146
1350550	294	serine acetyltransferase [Citrullus lana	0.996	1.0	0.854	1e-144
449461463	294	PREDICTED: serine acetyltransferase 5-li	0.996	1.0	0.850	1e-143
255546181	296	Serine acetyltransferase, putative [Rici	1.0	0.996	0.891	1e-142
224137072	293	predicted protein [Populus trichocarpa]	0.989	0.996	0.898	1e-142
388571926	290	SAT [Apium graveolens]	0.983	1.0	0.844	1e-141
28460066	293	serine O-acetyltransferase [Beta vulgari	0.993	1.0	0.844	1e-140
297796561	313	serine O-acetyltransferase Sat-52 [Arabi	0.996	0.939	0.816	1e-139

>gi|224135619|ref|XP_002327263.1| predicted protein [Populus trichocarpa] gi|222835633|gb|EEE74068.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/294 (89%), Positives = 270/294 (91%), Gaps = 2/294 (0%)

Query: 2   PAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSL 61
           P GELRYPSP   LT  T    D+  WVWAQIKAEARRDAESEPALASYLYSTILSHSSL
Sbjct: 3   PEGELRYPSPP--LTDSTTTIDDEAGWVWAQIKAEARRDAESEPALASYLYSTILSHSSL 60

Query: 62  ERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHC 121
           ERSL+FHLGNKLCSSTLLSTLLYDLFL+TF+SDP LR AAVADLRAAR RDPACVSFSHC
Sbjct: 61  ERSLSFHLGNKLCSSTLLSTLLYDLFLNTFTSDPGLRVAAVADLRAARARDPACVSFSHC 120

Query: 122 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG 181
           LLNYKGFLACQAHRVAHKLW QSRRPLALAL SRISDVFAVDIHPAAKIGKGILFDHATG
Sbjct: 121 LLNYKGFLACQAHRVAHKLWNQSRRPLALALHSRISDVFAVDIHPAAKIGKGILFDHATG 180

Query: 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
           VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK+G
Sbjct: 181 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKIG 240

Query: 242 AGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           AGSVVLIDVP R T VGNPARLVGGKEK +  EECPGESMD TSFIS+WSDYII
Sbjct: 241 AGSVVLIDVPPRTTTVGNPARLVGGKEKPAKLEECPGESMDQTSFISDWSDYII 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444969|ref|XP_002282550.1| PREDICTED: serine acetyltransferase 5-like [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/295 (86%), Positives = 272/295 (92%), Gaps = 5/295 (1%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MPAGELR+PS      +    +G+DEAW+W QIKAEARRDAESEPALASYLYSTILSHSS
Sbjct: 17  MPAGELRHPS-----ILPATESGEDEAWLWTQIKAEARRDAESEPALASYLYSTILSHSS 71

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFLDTFS D  LR+A VADLRA  +RDPACVSFSH
Sbjct: 72  LERSLSFHLGNKLCSSTLLSTLLYDLFLDTFSKDAELRSATVADLRANHMRDPACVSFSH 131

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAH+LWTQ RRPLALALQSRI+DVFAVDIHPAA+IGKGILFDHAT
Sbjct: 132 CLLNYKGFLACQAHRVAHRLWTQMRRPLALALQSRIADVFAVDIHPAARIGKGILFDHAT 191

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVV+GETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDGVLIGAGATILGN+KIGEGAK+
Sbjct: 192 GVVVGETAVIGNNVSILHHVTLGGTGKAGGDRHPKIGDGVLIGAGATILGNIKIGEGAKI 251

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVPAR TAVGNPARLVGGKEK + +E+ PGESMDHTSFISEWSDYII
Sbjct: 252 GAGSVVLIDVPARTTAVGNPARLVGGKEKPARHEDVPGESMDHTSFISEWSDYII 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841681|emb|CAN62211.1| hypothetical protein VITISV_002361 [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/295 (86%), Positives = 272/295 (92%), Gaps = 5/295 (1%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MPAGEJR+PS      +    +G+DEAW+W QIKAEARRDAESEPALASYLYSTILSHSS
Sbjct: 1   MPAGEJRHPS-----ILPATESGZDEAWLWTQIKAEARRDAESEPALASYLYSTILSHSS 55

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFLDTFS D  LR+A VADLRA  +RDPACVSFSH
Sbjct: 56  LERSLSFHLGNKLCSSTLLSTLLYDLFLDTFSKDAELRSATVADLRANHMRDPACVSFSH 115

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAH+LWTQ RRPLALALQSRI+DVFAVDIHPAA+IGKGILFDHAT
Sbjct: 116 CLLNYKGFLACQAHRVAHRLWTQMRRPLALALQSRIADVFAVDIHPAARIGKGILFDHAT 175

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVV+GETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDGVLIGAGATILGN+KIGEGAK+
Sbjct: 176 GVVVGETAVIGNNVSILHHVTLGGTGKAGGDRHPKIGDGVLIGAGATILGNIKIGEGAKI 235

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVPAR TAVGNPARLVGGKEK + +E+ PGESMDHTSFISEWSDYII
Sbjct: 236 GAGSVVLIDVPARTTAVGNPARLVGGKEKPARHEDVPGESMDHTSFISEWSDYII 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1350550|dbj|BAA12843.1| serine acetyltransferase [Citrullus lanatus] gi|1841312|dbj|BAA08479.1| serine acetyltransferase. [Citrullus lanatus var. lanatus] gi|2337772|dbj|BAA21827.1| serine acetyltransferase [Citrullus lanatus]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/295 (85%), Positives = 268/295 (90%), Gaps = 1/295 (0%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MP GELR+ S +    +E+    +DE W+W QIKAEARRDAESEPALASYLYSTILSHSS
Sbjct: 1   MPVGELRFSSQSSTTVVES-TTNNDETWLWGQIKAEARRDAESEPALASYLYSTILSHSS 59

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFL+ FS+D  LR+A VADL+AAR RDPACVSFSH
Sbjct: 60  LERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSTDYCLRSAVVADLQAARERDPACVSFSH 119

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAHKLW QSRRPLALALQSRI+DVFAVDIHPAA+IGKGILFDHAT
Sbjct: 120 CLLNYKGFLACQAHRVAHKLWNQSRRPLALALQSRIADVFAVDIHPAARIGKGILFDHAT 179

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVV+GETAVIGNNVSILHHVTLGGTGK  GDRHPKIGDGVLIGAGATILGNVKIGEGAK+
Sbjct: 180 GVVVGETAVIGNNVSILHHVTLGGTGKMCGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVP R TAVGNPARLVGGKEK S  E+ PGESMDHTSFISEWSDYII
Sbjct: 240 GAGSVVLIDVPPRTTAVGNPARLVGGKEKPSQLEDIPGESMDHTSFISEWSDYII 294

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461463|ref|XP_004148461.1| PREDICTED: serine acetyltransferase 5-like [Cucumis sativus] gi|449529483|ref|XP_004171729.1| PREDICTED: serine acetyltransferase 5-like [Cucumis sativus]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/295 (85%), Positives = 269/295 (91%), Gaps = 1/295 (0%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MP GELR+ S +    +++    +DE W+W QIKAEAR+DAESEPALASYLYSTILSHSS
Sbjct: 1   MPIGELRFSSQSPTAVVDS-TMNNDETWLWGQIKAEARQDAESEPALASYLYSTILSHSS 59

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFL+ FS+D  LR+AAVADLRAAR RDPACVS+SH
Sbjct: 60  LERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSTDYGLRSAAVADLRAARERDPACVSYSH 119

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAHKLW QSRRPLALALQSRI+DVFAVDIHPAA+IGKGILFDHAT
Sbjct: 120 CLLNYKGFLACQAHRVAHKLWNQSRRPLALALQSRIADVFAVDIHPAARIGKGILFDHAT 179

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVV+GETAVIGNNVSILHHVTLGGTGK  GDRHPKIGDGVLIGAGATILGNVKIGEGAK+
Sbjct: 180 GVVVGETAVIGNNVSILHHVTLGGTGKMCGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVP R TAVGNPARLVGGKEK S  E+ PGESMDHTSFISEWSDYII
Sbjct: 240 GAGSVVLIDVPPRTTAVGNPARLVGGKEKPSQLEDIPGESMDHTSFISEWSDYII 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546181|ref|XP_002514150.1| Serine acetyltransferase, putative [Ricinus communis] gi|223546606|gb|EEF48104.1| Serine acetyltransferase, putative [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/296 (89%), Positives = 276/296 (93%), Gaps = 1/296 (0%)

Query: 1   MPAGELRY-PSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHS 59
           MPAGELRY P P    T ++    +DE WVWAQIKAEARRDAESEPALASYLYSTILSHS
Sbjct: 1   MPAGELRYSPPPTPQATNDSITTHEDEGWVWAQIKAEARRDAESEPALASYLYSTILSHS 60

Query: 60  SLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFS 119
           SLERSL+FHLGNKLCSSTLLSTLLYDLFL+TFSSD +LRAAAVADLRAARVRDPACVSFS
Sbjct: 61  SLERSLSFHLGNKLCSSTLLSTLLYDLFLNTFSSDSSLRAAAVADLRAARVRDPACVSFS 120

Query: 120 HCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHA 179
           HCLLNYKGFLACQAHRVAHKLWT++RRPLALAL SRISDVFAVDIHPAAKIGKG+LFDHA
Sbjct: 121 HCLLNYKGFLACQAHRVAHKLWTEARRPLALALHSRISDVFAVDIHPAAKIGKGVLFDHA 180

Query: 180 TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK 239
           TGVVIGETAV+GNNVSILHHVTLGGTGKA GDRHPKIGDGVLIGAGATILGNVKIGEGAK
Sbjct: 181 TGVVIGETAVVGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAK 240

Query: 240 VGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           VGAGSVVLIDVP R TAVGNPARLVGGKE  + +EECPGESMDHTSFISEWSDYII
Sbjct: 241 VGAGSVVLIDVPPRTTAVGNPARLVGGKETPAKHEECPGESMDHTSFISEWSDYII 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137072|ref|XP_002322486.1| predicted protein [Populus trichocarpa] gi|222869482|gb|EEF06613.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/296 (89%), Positives = 276/296 (93%), Gaps = 4/296 (1%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEA-WVWAQIKAEARRDAESEPALASYLYSTILSHS 59
           MP GELRYPSP     + +    D EA  VWAQIKAEARRDAESEPALASYLYSTILSHS
Sbjct: 1   MPTGELRYPSPP---PVNSTTTVDVEAGLVWAQIKAEARRDAESEPALASYLYSTILSHS 57

Query: 60  SLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFS 119
           SLERSLAFHLGNKLCSSTLLSTLLYDLFL+TF+SDP LRAAAVADLRAARVRDPACVSFS
Sbjct: 58  SLERSLAFHLGNKLCSSTLLSTLLYDLFLNTFTSDPCLRAAAVADLRAARVRDPACVSFS 117

Query: 120 HCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHA 179
           HCLLNYKGFLACQAHRVAHKLWTQSRRPLALAL SR+SDVFAVDIHPAAKIGKGILFDHA
Sbjct: 118 HCLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRVSDVFAVDIHPAAKIGKGILFDHA 177

Query: 180 TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK 239
           TGVVIGETAV+GNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK
Sbjct: 178 TGVVIGETAVVGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK 237

Query: 240 VGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           +GAGSVVLIDVP R TAVGNPARLVGGKEK + +EECPGESMDHTSFIS+WSDYII
Sbjct: 238 IGAGSVVLIDVPPRTTAVGNPARLVGGKEKPAKHEECPGESMDHTSFISDWSDYII 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388571926|gb|AFK08536.2| SAT [Apium graveolens]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/295 (84%), Positives = 268/295 (90%), Gaps = 5/295 (1%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MPAGE  Y +P       T  + ++EAW+WAQIKAEARRDA+SEPALASYLYSTILSHSS
Sbjct: 1   MPAGEYLYTTP-----QPTAGSNEEEAWLWAQIKAEARRDADSEPALASYLYSTILSHSS 55

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYD+FL+TFS+D ALR+A VADLRAAR RDPACVSF+H
Sbjct: 56  LERSLSFHLGNKLCSSTLLSTLLYDMFLNTFSNDAALRSATVADLRAARFRDPACVSFAH 115

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAHKLWTQ R+PLALALQSRISDVFAVDIHPAA+IGKGILFDHAT
Sbjct: 116 CLLNYKGFLACQAHRVAHKLWTQCRQPLALALQSRISDVFAVDIHPAARIGKGILFDHAT 175

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVV+GETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDGVLIGAGATILGNV IGEGAK+
Sbjct: 176 GVVVGETAVIGNNVSILHHVTLGGTGKAGGDRHPKIGDGVLIGAGATILGNVNIGEGAKI 235

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVP R TAVGNPA LVGGK+  S +E+ PGE MDHTSFISEWSDYII
Sbjct: 236 GAGSVVLIDVPPRTTAVGNPAWLVGGKDTPSKHEDVPGEFMDHTSFISEWSDYII 290

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28460066|emb|CAD67560.1| serine O-acetyltransferase [Beta vulgaris]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/295 (84%), Positives = 266/295 (90%), Gaps = 2/295 (0%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MP GE+  PS     T E+    +DEAWVW QIKAEARRDA+SEPALASYLYSTILSHSS
Sbjct: 1   MPGGEVSAPSSVVLPTAES--IENDEAWVWGQIKAEARRDADSEPALASYLYSTILSHSS 58

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFL+ FSSD +LR A VADLRAARVRDPACVSFSH
Sbjct: 59  LERSLSFHLGNKLCSSTLLSTLLYDLFLNIFSSDSSLRVAVVADLRAARVRDPACVSFSH 118

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAH+LW Q R+PLALAL SRISDVFAVDIHPAA+IGK ILFDHAT
Sbjct: 119 CLLNYKGFLACQAHRVAHRLWNQERQPLALALHSRISDVFAVDIHPAARIGKAILFDHAT 178

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVVIGETAVIG+N SILHHVTLGGTGKA GDRHPK+GDGVLIGAGATILGN+KIG+GAK+
Sbjct: 179 GVVIGETAVIGDNCSILHHVTLGGTGKAVGDRHPKVGDGVLIGAGATILGNIKIGDGAKI 238

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVP RATAVGNPARL+GGKEK S N + PGESMDHTSFISEWSDYII
Sbjct: 239 GAGSVVLIDVPPRATAVGNPARLLGGKEKPSRNVDVPGESMDHTSFISEWSDYII 293

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796561|ref|XP_002866165.1| serine O-acetyltransferase Sat-52 [Arabidopsis lyrata subsp. lyrata] gi|297312000|gb|EFH42424.1| serine O-acetyltransferase Sat-52 [Arabidopsis lyrata subsp. lyrata]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/311 (81%), Positives = 270/311 (86%), Gaps = 17/311 (5%)

Query: 2   PAGELRYPSPARNLTMETHAAGDDEAW----------------VWAQIKAEARRDAESEP 45
           PAGELR+ SP+++       + +  A                 +W QIKAEARRDAE+EP
Sbjct: 3   PAGELRHQSPSKDKQSSDTQSTEAAAAAAAAISAAAADAEAAGLWTQIKAEARRDAEAEP 62

Query: 46  ALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADL 105
           ALASYLYSTILSHSSLERS++FHLGNKLCSSTLLSTLLYDLFL+TFSSDP+LR A VADL
Sbjct: 63  ALASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLRNATVADL 122

Query: 106 RAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIH 165
           RAARVRDPAC+SFSHCLLNYKGFLA QAHRV+HKLWTQSR+PLALAL SRISDVFAVDIH
Sbjct: 123 RAARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKPLALALHSRISDVFAVDIH 182

Query: 166 PAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAG 225
           PAAKIGKGIL DHATGVVIGETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDG LIGAG
Sbjct: 183 PAAKIGKGILLDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGCLIGAG 242

Query: 226 ATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK-TSSNEECPGESMDHT 284
           ATILGNVKIG GAKVGAGSVVLIDVP RATAVGNPARLVGGKEK T  +EECPGESMDHT
Sbjct: 243 ATILGNVKIGAGAKVGAGSVVLIDVPCRATAVGNPARLVGGKEKPTIHDEECPGESMDHT 302

Query: 285 SFISEWSDYII 295
           SFISEWSDYII
Sbjct: 303 SFISEWSDYII 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2164996	312	SERAT1;1 "serine acetyltransfe	0.996	0.942	0.716	1.9e-108
TAIR|locus:2012085	314	SERAT2;1 "serine acetyltransfe	0.613	0.576	0.718	1.7e-80
TAIR|locus:2089974	391	SERAT2;2 "serine acetyltransfe	0.613	0.462	0.723	7.4e-80
TAIR|locus:2127978	355	SERAT3;2 "serine acetyltransfe	0.555	0.461	0.650	2.3e-66
TAIR|locus:2057254	323	ATSERAT3;1 [Arabidopsis thalia	0.555	0.507	0.639	1.6e-63
UNIPROTKB|P0A9D4	273	cysE "serine acetyltransferase	0.579	0.626	0.598	2e-59
UNIPROTKB|Q9KNT2	273	VC_2649 "Serine acetyltransfer	0.501	0.542	0.621	8.8e-55
TIGR_CMR|VC_2649	273	VC_2649 "serine acetyltransfer	0.501	0.542	0.621	8.8e-55
TIGR_CMR|SPO_2247	270	SPO_2247 "serine O-acetyltrans	0.488	0.533	0.631	1.1e-54
POMBASE|SPAC1039.08	270	SPAC1039.08 "serine acetyltran	0.511	0.559	0.470	2.2e-38

TAIR|locus:2164996 SERAT1;1 "serine acetyltransferase 1;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 222/310 (71%), Positives = 235/310 (75%)

Query:     2 PAGELRYPSPARN-LTMETH-------------AAGDDEA-WVWAQIKAEARRDAESEPA 46
             PAGELR+ SP++  L+  T              AA D EA  +W QIKAEARRDAE+EPA
Sbjct:     3 PAGELRHQSPSKEKLSSVTQSDEAEAASAAISAAAADAEAAGLWTQIKAEARRDAEAEPA 62

Query:    47 LASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 106
             LASYLYSTILSHSSLERS++FHLGNKLC                                
Sbjct:    63 LASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLRNATVADLR 122

Query:   107 XXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHP 166
                     C+SFSHCLLNYKGFLA QAHRV+HKLWTQSR+PLALAL SRISDVFAVDIHP
Sbjct:   123 AARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKPLALALHSRISDVFAVDIHP 182

Query:   167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
             AAKIGKGIL DHATGVV+GETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDG LIGAGA
Sbjct:   183 AAKIGKGILLDHATGVVVGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGCLIGAGA 242

Query:   227 TILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK-TSSNEECPGESMDHTS 285
             TILGNVKIG GAKVGAGSVVLIDVP R TAVGNPARLVGGKEK T  +EECPGESMDHTS
Sbjct:   243 TILGNVKIGAGAKVGAGSVVLIDVPCRGTAVGNPARLVGGKEKPTIHDEECPGESMDHTS 302

Query:   286 FISEWSDYII 295
             FISEWSDYII
Sbjct:   303 FISEWSDYII 312

GO:0005737 "cytoplasm" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IGI

GO:0016740 "transferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2012085 SERAT2;1 "serine acetyltransferase 2;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 130/181 (71%), Positives = 157/181 (86%)

Query:   115 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGI 174
             C+S+ HC L +KGFLACQAHR+AH LW Q+R+ +AL +Q+R+S+ FAVDIHP AKIGKGI
Sbjct:   134 CISYVHCFLGFKGFLACQAHRIAHTLWKQNRKIVALLIQNRVSESFAVDIHPGAKIGKGI 193

Query:   175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
             L DHATGVVIGETAV+G+NVSILH VTLGGTGK SGDRHPKIGDGVLIGAG+ ILGN+ I
Sbjct:   194 LLDHATGVVIGETAVVGDNVSILHGVTLGGTGKQSGDRHPKIGDGVLIGAGSCILGNITI 253

Query:   235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYI 294
             GEGAK+G+GSVV+ DVPAR TAVGNPARL+GGKE    +++ P  +MD TS+++EWSDY+
Sbjct:   254 GEGAKIGSGSVVVKDVPARTTAVGNPARLIGGKENPRKHDKIPCLTMDQTSYLTEWSDYV 313

Query:   295 I 295
             I
Sbjct:   314 I 314

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IGI;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

GO:0009970 "cellular response to sulfate starvation" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2089974 SERAT2;2 "serine acetyltransferase 2;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
 Identities = 131/181 (72%), Positives = 155/181 (85%)

Query:   115 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGI 174
             C+S+ HC L++KGFLACQAHR+AH+LWTQ R+ LAL +Q+R+S+ FAVD HP AKIG GI
Sbjct:   211 CISYVHCFLHFKGFLACQAHRIAHELWTQDRKILALLIQNRVSEAFAVDFHPGAKIGTGI 270

Query:   175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
             L DHAT +VIGETAV+GNNVSILH+VTLGGTGK  GDRHPKIGDGVLIGAG  ILGN+ I
Sbjct:   271 LLDHATAIVIGETAVVGNNVSILHNVTLGGTGKQCGDRHPKIGDGVLIGAGTCILGNITI 330

Query:   235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYI 294
             GEGAK+GAGSVVL DVP R TAVGNPARL+GGK+   ++++ PG +MD TS ISEWSDY+
Sbjct:   331 GEGAKIGAGSVVLKDVPPRTTAVGNPARLLGGKDNPKTHDKIPGLTMDQTSHISEWSDYV 390

Query:   295 I 295
             I
Sbjct:   391 I 391

GO:0005737 "cytoplasm" evidence=IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IGI;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2127978 SERAT3;2 "serine acetyltransferase 3;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 110/169 (65%), Positives = 134/169 (79%)

Query:   115 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGI 174
             C+S+S  +L+ KG+LA QA+RVAHKLW Q R+ LALALQSR+S+VF +DIHPAA+IGKGI
Sbjct:   159 CLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGI 218

Query:   175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
             L DH TGVVIGETAVIG+ VSILH VTLGGTGK +GDRHP IGDG L+GA  TILGN+KI
Sbjct:   219 LLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPNIGDGALLGACVTILGNIKI 278

Query:   235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDH 283
             G GA V AGS+VL DVP+ +   GNPA+L+G  +     E+ P  +M+H
Sbjct:   279 GAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFVD-----EQDPSMTMEH 322

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IGI;IDA

GO:0016407 "acetyltransferase activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2057254 ATSERAT3;1 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 108/169 (63%), Positives = 131/169 (77%)

Query:   115 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGI 174
             C+S+S  +L+ KG+ A QA+RVAHKLW + R+ LALALQSRIS+VF +DIHPAA+IG+GI
Sbjct:   122 CLSYSSAILHLKGYHALQAYRVAHKLWNEGRKLLALALQSRISEVFGIDIHPAARIGEGI 181

Query:   175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
             L DH TGVVIGETAVIGN VSILH VTLGGTGK +GDRHPKIG+G L+GA  TILGN+ I
Sbjct:   182 LLDHGTGVVIGETAVIGNGVSILHGVTLGGTGKETGDRHPKIGEGALLGACVTILGNISI 241

Query:   235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDH 283
             G GA V AGS+VL DVP+ +   GNPA+L+   E     E+ P  +M H
Sbjct:   242 GAGAMVAAGSLVLKDVPSHSVVAGNPAKLIRVME-----EQDPSLAMKH 285

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IGI;ISS;IDA

GO:0016407 "acetyltransferase activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P0A9D4 cysE "serine acetyltransferase monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 512 (185.3 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 106/177 (59%), Positives = 131/177 (74%)

Query:   118 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFD 177
             +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ D
Sbjct:    98 YSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLD 157

Query:   178 HATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237
             HATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G G
Sbjct:   158 HATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRG 217

Query:   238 AKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMD-HTSFISEWSDY 293
             AK+GAGSVVL  VP   TA G PAR+VG   K  S++  P   MD H + I+   +Y
Sbjct:   218 AKIGAGSVVLQPVPPHTTAAGVPARIVG---KPDSDK--PSMDMDQHFNGINHTFEY 269

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA;IDA

GO:0009001 "serine O-acetyltransferase activity" evidence=IEA;IDA

GO:0009333 "cysteine synthase complex" evidence=IDA

UNIPROTKB|Q9KNT2 VC_2649 "Serine acetyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 464 (168.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 92/148 (62%), Positives = 114/148 (77%)

Query:   118 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFD 177
             +S  LL  KG+ A Q +RVA+ LW Q R+ LA   Q++IS    VDIHPAA+IG+GI+ D
Sbjct:    98 YSMPLLYLKGYHALQGYRVANWLWRQGRKALATYFQNQISVACQVDIHPAARIGRGIMLD 157

Query:   178 HATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237
             HATG+VIGETAV+ ++VSIL  VTLGGTGK  GDRHPKI +GV+IGAGA ILGN+++GEG
Sbjct:   158 HATGIVIGETAVVEDDVSILQDVTLGGTGKECGDRHPKIREGVMIGAGAKILGNIEVGEG 217

Query:   238 AKVGAGSVVLIDVPARATAVGNPARLVG 265
             AK+G+GSVVL  VP   T  G PAR+VG
Sbjct:   218 AKIGSGSVVLQAVPPHTTVAGVPARIVG 245

GO:0006535 "cysteine biosynthetic process from serine" evidence=ISS

GO:0009001 "serine O-acetyltransferase activity" evidence=ISS

TIGR_CMR|VC_2649 VC_2649 "serine acetyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 464 (168.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 92/148 (62%), Positives = 114/148 (77%)

Query:   118 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFD 177
             +S  LL  KG+ A Q +RVA+ LW Q R+ LA   Q++IS    VDIHPAA+IG+GI+ D
Sbjct:    98 YSMPLLYLKGYHALQGYRVANWLWRQGRKALATYFQNQISVACQVDIHPAARIGRGIMLD 157

Query:   178 HATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237
             HATG+VIGETAV+ ++VSIL  VTLGGTGK  GDRHPKI +GV+IGAGA ILGN+++GEG
Sbjct:   158 HATGIVIGETAVVEDDVSILQDVTLGGTGKECGDRHPKIREGVMIGAGAKILGNIEVGEG 217

Query:   238 AKVGAGSVVLIDVPARATAVGNPARLVG 265
             AK+G+GSVVL  VP   T  G PAR+VG
Sbjct:   218 AKIGSGSVVLQAVPPHTTVAGVPARIVG 245

GO:0006535 "cysteine biosynthetic process from serine" evidence=ISS

GO:0009001 "serine O-acetyltransferase activity" evidence=ISS

TIGR_CMR|SPO_2247 SPO_2247 "serine O-acetyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 485 (175.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 91/144 (63%), Positives = 114/144 (79%)

Query:   122 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG 181
             +L +KG+ A QA+RVAH LWT+ R  LA   Q R+S++F VDIHPAA+IGKGI+ DHA  
Sbjct:   107 ILYFKGYQAMQAYRVAHWLWTRKRYDLAYFFQMRVSEIFGVDIHPAARIGKGIMIDHAHS 166

Query:   182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
             +VIGETAV+G+NVS+LH VTLGGTGK   DRHPKIGDGVLIGAGA +LGN+K+G  +++ 
Sbjct:   167 IVIGETAVVGDNVSMLHSVTLGGTGKEEEDRHPKIGDGVLIGAGAKVLGNIKVGHCSRIA 226

Query:   242 AGSVVLIDVPARATAVGNPARLVG 265
             AGSVVL +VP   T  G PA++VG
Sbjct:   227 AGSVVLSEVPPCKTVAGIPAKIVG 250

GO:0006535 "cysteine biosynthetic process from serine" evidence=ISS

GO:0009001 "serine O-acetyltransferase activity" evidence=ISS

POMBASE|SPAC1039.08 SPAC1039.08 "serine acetyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 362 (132.5 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 71/151 (47%), Positives = 99/151 (65%)

Query:   115 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGI 174
             C       L+++GF A Q +R+AH LW++  +  A+ +Q+  +  + VDIHPAA IG G+
Sbjct:   103 CPDLISAFLSFRGFHALQLYRIAHGLWSEGDKTSAVLVQNWTAVAYGVDIHPAASIGDGL 162

Query:   175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
               DHA G+VIGETA++ + VSI H+VTLG T K SG RHP I    ++  GAT+LG V++
Sbjct:   163 FLDHALGIVIGETAIVEDGVSIWHNVTLGSTFKDSGARHPVIRKNAMLCTGATVLGRVEV 222

Query:   235 GEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
             GE A V AG++V  DV     A+G+PAR VG
Sbjct:   223 GENAVVAAGALVTKDVAPNRLALGSPARDVG 253

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006535 "cysteine biosynthetic process from serine" evidence=ISS

GO:0009001 "serine O-acetyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29847	CYSE_SALTY	2, ., 3, ., 1, ., 3, 0	0.5310	0.8677	0.9377	yes	no
Q0DGG8	SAT5_ORYSJ	2, ., 3, ., 1, ., 3, 0	0.7985	0.9220	0.8	yes	no
P43886	CYSE_HAEIN	2, ., 3, ., 1, ., 3, 0	0.5508	0.8	0.8838	yes	no
Q42538	SAT5_ARATH	2, ., 3, ., 1, ., 3, 0	0.8193	0.9966	0.9423	yes	no
Q8W0E4	SAT1_ORYSJ	2, ., 3, ., 1, ., 3, 0	0.7970	0.9050	0.8811	no	no
Q89B11	CYSE_BUCBP	2, ., 3, ., 1, ., 3, 0	0.3868	0.8067	0.9370	yes	no
P0A9D4	CYSE_ECOLI	2, ., 3, ., 1, ., 3, 0	0.5225	0.8813	0.9523	N/A	no
P0A9D5	CYSE_ECOL6	2, ., 3, ., 1, ., 3, 0	0.5225	0.8813	0.9523	yes	no
P0A9D6	CYSE_ECO57	2, ., 3, ., 1, ., 3, 0	0.5225	0.8813	0.9523	N/A	no
P0A9D7	CYSE_SHIFL	2, ., 3, ., 1, ., 3, 0	0.5225	0.8813	0.9523	yes	no
Q9US33	SAT_SCHPO	2, ., 3, ., 1, ., 3, 0	0.4033	0.8033	0.8777	yes	no
P32003	CYSE_BUCAP	2, ., 3, ., 1, ., 3, 0	0.452	0.8440	0.9540	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.998
3rd Layer	2.3.1.30	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_410108	serine O-acetyltransferase (EC-2.3.1.30) (294 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.1757000202	O-acetylserine (thiol) lyase (EC-2.5.1.47) (326 aa)	•		•			•	•		0.942
	gw1.142.135.1	hypothetical protein (336 aa)	•		•			•	•		0.942
	fgenesh4_pg.C_LG_VIII001376	O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)	•		•			•	•		0.942
	estExt_fgenesh4_pg.C_700106	O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)	•		•			•	•		0.941
	eugene3.00130338	RecName- Full=Cysteine synthase; EC=2.5.1.47; (326 aa)	•		•			•	•		0.941
	eugene3.00700110	hypothetical protein (331 aa)	•		•			•	•		0.940
	eugene3.00700113	hypothetical protein (320 aa)	•		•			•	•		0.939
	eugene3.00700109	hypothetical protein (324 aa)	•		•			•	•		0.939
	gw1.XIV.1323.1	cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa)	•		•			•	•		0.935
	grail3.0039007102	RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa)			•			•	•		0.932

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PLN02694	294	PLN02694, PLN02694, serine O-acetyltransferase	0.0
PLN02357	360	PLN02357, PLN02357, serine acetyltransferase	1e-149
PRK11132	273	PRK11132, cysE, serine acetyltransferase; Provisio	1e-111
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	1e-104
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	3e-84
TIGR01172	162	TIGR01172, cysE, serine O-acetyltransferase	8e-82
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	3e-55
pfam06426	105	pfam06426, SATase_N, Serine acetyltransferase, N-t	7e-53
smart00971	105	smart00971, SATase_N, Serine acetyltransferase, N-	9e-45
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	5e-25
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	7e-24
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	2e-23
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	2e-22
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	3e-21
cd03357	169	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase	4e-20
PRK10191	146	PRK10191, PRK10191, putative acyl transferase; Pro	7e-19
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-18
TIGR04016	146	TIGR04016, WcaB, colanic acid biosynthesis acetylt	5e-18
cd03349	145	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT)	4e-16
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	1e-14
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	1e-14
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	8e-13
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	2e-12
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	6e-12
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	7e-12
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	1e-11
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-10
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	2e-10
PRK10502	182	PRK10502, PRK10502, putative acyl transferase; Pro	4e-10
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	4e-10
TIGR03308	204	TIGR03308, phn_thr-fam, phosphonate metabolim prot	5e-10
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	7e-10
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	8e-10
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	2e-09
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	2e-09
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	2e-09
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	4e-09
PRK09527	203	PRK09527, lacA, galactoside O-acetyltransferase; R	6e-09
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	9e-09
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	2e-08
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	3e-08
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	3e-08
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-08
cd03350	139	cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyri	4e-08
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	7e-08
PRK09677	192	PRK09677, PRK09677, putative lipopolysaccharide bi	1e-07
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	1e-07
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-07
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-07
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	3e-07
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	3e-07
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	4e-07
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	6e-07
PRK10092	183	PRK10092, PRK10092, maltose O-acetyltransferase; P	8e-07
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-06
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-06
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-06
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	4e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	4e-06
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	4e-06
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	5e-06
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	6e-06
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	7e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	8e-06
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	1e-05
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	1e-05
PLN02296	269	PLN02296, PLN02296, carbonate dehydratase	2e-05
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	5e-05
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	7e-05
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	9e-05
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	1e-04
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-04
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	3e-04
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	3e-04
PRK11830	272	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-car	3e-04
TIGR03991	337	TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine	3e-04
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	4e-04
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	5e-04
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	7e-04
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	7e-04
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	8e-04
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	0.001
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	0.001
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	0.001
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	0.002
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	0.002
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	0.003
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	0.003
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	0.004

>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase

 Score =  563 bits (1451), Expect = 0.0
 Identities = 266/295 (90%), Positives = 276/295 (93%), Gaps = 2/295 (0%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           MPAGELR+PSP    T     A ++ AW+W QIKAEARRDAESEPALASYLYSTILSHSS
Sbjct: 2   MPAGELRHPSPP--KTNSATTADEEAAWLWTQIKAEARRDAESEPALASYLYSTILSHSS 59

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LERSL+FHLGNKLCSSTLLSTLLYDLFL+TFSSDP+LRAA VADLRAARVRDPACVSFSH
Sbjct: 60  LERSLSFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSH 119

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
           CLLNYKGFLACQAHRVAHKLWTQSRRPLALAL SRISDVFAVDIHPAAKIGKGILFDHAT
Sbjct: 120 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRISDVFAVDIHPAAKIGKGILFDHAT 179

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVVIGETAVIGNNVSILHHVTLGGTGKA GDRHPKIGDGVLIGAGATILGNVKIGEGAK+
Sbjct: 180 GVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           GAGSVVLIDVP R TAVGNPARLVGGKEK + +EECPGESMDHTSFISEWSDYII
Sbjct: 240 GAGSVVLIDVPPRTTAVGNPARLVGGKEKPAKHEECPGESMDHTSFISEWSDYII 294

Length = 294

>gnl|CDD|215205 PLN02357, PLN02357, serine acetyltransferase

 Score =  421 bits (1083), Expect = e-149
 Identities = 179/272 (65%), Positives = 213/272 (78%)

Query: 24  DDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLL 83
           D +  VW +I+ EA+ D E EP L+SY Y++ILSH SLE +LA HL  KL +  L S  L
Sbjct: 89  DRDDDVWLKIQEEAKSDVEQEPILSSYYYASILSHRSLESALANHLSVKLSNLNLPSNTL 148

Query: 84  YDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQ 143
           +DLF+      P +  +   DLRA + RDPAC+S+ HC LN+KGFLACQAHR+AHKLWTQ
Sbjct: 149 FDLFIGVLEESPEIIESVKQDLRAVKERDPACISYVHCFLNFKGFLACQAHRIAHKLWTQ 208

Query: 144 SRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG 203
            R+ LAL +Q+R+S+ FAVDIHP AKIG+GIL DHATGVVIGETAV+GNNVSILH+VTLG
Sbjct: 209 GRKILALLIQNRVSEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLG 268

Query: 204 GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 263
           GTGK SGDRHPKIGDGVLIGAG  ILGN+ IGEGAK+GAGSVVL DVP R TAVGNPARL
Sbjct: 269 GTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPARL 328

Query: 264 VGGKEKTSSNEECPGESMDHTSFISEWSDYII 295
           +GGKE    +++ P  +MD TS ISEWSDY+I
Sbjct: 329 IGGKENPIKHDKIPSLTMDQTSHISEWSDYVI 360

Length = 360

>gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional

 Score =  322 bits (828), Expect = e-111
 Identities = 141/254 (55%), Positives = 182/254 (71%), Gaps = 5/254 (1%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW  IKAEAR  A+ EP LAS+ ++T+L H +L  +L++ L NKL S  + +  + ++  
Sbjct: 9   VWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVE 68

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           + +++DP + A+A  D++A R RDPA   +S  LL  KGF A QA+R+ H LW Q RR L
Sbjct: 69  EAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRAL 128

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           A+ LQ++IS  F VDIHPAAKIG+GI+ DHATG+VIGETAVI N+VSIL  VTLGGTGK 
Sbjct: 129 AIYLQNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKT 188

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           SGDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG   
Sbjct: 189 SGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVG--- 245

Query: 269 KTSSNEECPGESMD 282
           K  S++  P   MD
Sbjct: 246 KPESDK--PSMDMD 257

Length = 273

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score =  308 bits (789), Expect = e-104
 Identities = 146/255 (57%), Positives = 194/255 (76%), Gaps = 5/255 (1%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           +W  I+ EA+ +AE EP L+S+LY++ILSH  LE++L+F L N+L + TLL+T L D+F 
Sbjct: 73  IWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFC 132

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           +    D  ++++   D++A + RDPAC+S+S  +L+ KG+LA QA+RVAHKLW Q R+ L
Sbjct: 133 NVMVHDRGIQSSIRLDVQAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLL 192

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           ALALQSR+S+VF +DIHPAA+IGKGIL DH TGVVIGETAVIG+ VSILH VTLGGTGK 
Sbjct: 193 ALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKE 252

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           +GDRHPKIGDG L+GA  TILGN+ IG GA V AGS+VL DVP+ +   GNPA+L+G  +
Sbjct: 253 TGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFVD 312

Query: 269 KTSSNEECPGESMDH 283
                E+ P  +M++
Sbjct: 313 -----EQDPSLTMEY 322

Length = 355

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score =  251 bits (642), Expect = 3e-84
 Identities = 102/169 (60%), Positives = 122/169 (72%)

Query: 101 AVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF 160
           A  D+RA R RDPA  S+   LL Y GF A  AHR+AH LW + R+ LA  L S    +F
Sbjct: 7   AREDIRAVRERDPAARSYLEVLLYYPGFHALWAHRLAHWLWNRGRKLLARLLSSLSRFLF 66

Query: 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGV 220
            ++IHP AKIG+G+  DH TGVVIGETAVIG++V+I H VTLGGTGK SG RHP IG+GV
Sbjct: 67  GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGV 126

Query: 221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK 269
            IGAGA ILGN++IG+ AK+GAGSVVL DVP  AT VG PAR++G    
Sbjct: 127 YIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIGRPGS 175

Length = 194

>gnl|CDD|200082 TIGR01172, cysE, serine O-acetyltransferase

 Score =  243 bits (623), Expect = 8e-82
 Identities = 95/162 (58%), Positives = 115/162 (70%)

Query: 101 AVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF 160
              D+RA R RDPA  S+   LL Y GF A  A+R AH LW +  + LA  L + I  + 
Sbjct: 1   IREDIRAVRERDPAARSYLEVLLYYPGFHALWAYRFAHFLWKRGFKFLARLLSNFIRVLT 60

Query: 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGV 220
            VDIHP A+IG+G+  DH TGVVIGETAVIG++V+I H VTLGGTGK  G RHP IG+GV
Sbjct: 61  GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTIGEGV 120

Query: 221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
           +IGAGA +LGN+++GE AK+GA SVVL DVP  AT VG PAR
Sbjct: 121 MIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPAR 162

Cysteine biosynthesis [Amino acid biosynthesis, Serine family]. Length = 162

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score =  173 bits (442), Expect = 3e-55
 Identities = 63/101 (62%), Positives = 74/101 (73%)

Query: 160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDG 219
             +DIHP AKIG G+  DH TG+VIGETAVIG+N +I   VTLGG GK  G RHP IGD 
Sbjct: 1   TGIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDN 60

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260
           V+IGAGA ILGN+ IG+  K+GA +VV  DVPA +T VG P
Sbjct: 61  VVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|219022 pfam06426, SATase_N, Serine acetyltransferase, N-terminal

 Score =  168 bits (427), Expect = 7e-53
 Identities = 55/105 (52%), Positives = 74/105 (70%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW++I+AEA R AE EP LAS+L++TIL+H SLE +LA+ L NKL S T+ +  L +LF 
Sbjct: 1   VWSRIRAEAERAAEREPLLASFLHATILNHDSLESALAYRLANKLASPTMSADTLRELFD 60

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQA 133
           + +++DP +  AA ADL A R RDPAC  +   LL +KGF A QA
Sbjct: 61  EAYAADPEIVEAARADLLAVRDRDPACDRYLTPLLYFKGFHALQA 105

The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants and bacteria. Length = 105

>gnl|CDD|198039 smart00971, SATase_N, Serine acetyltransferase, N-terminal

 Score =  146 bits (372), Expect = 9e-45
 Identities = 54/105 (51%), Positives = 74/105 (70%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW +I+AEAR  AE EP LAS+LY+TIL+H SLE +LA+ L NKL ++ + + LL +LF 
Sbjct: 1   VWQRIRAEAREAAEREPILASFLYATILNHDSLEAALAYRLANKLGNADMSADLLRELFE 60

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQA 133
           D +++DP +  AA AD++A   RDPAC  +   LL +KGF A QA
Sbjct: 61  DAYAADPEIVEAAAADIQAVYDRDPACDRYLTPLLYFKGFHALQA 105

The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants.and bacteria. Length = 105

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 96.0 bits (240), Expect = 5e-25
 Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 170 IGKGILFDHATGVVIGETAVIGNNVSIL---HHVTLGGTGKASGDRHP--KIGDGVLIGA 224
           IG G +     G+ IG+  +IG NV+I    H +         G       IGD V IGA
Sbjct: 10  IGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGA 69

Query: 225 GATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
              IL  V IG+GA VGAGSVV  DVP  +   GNPA+++
Sbjct: 70  NVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 95.7 bits (239), Expect = 7e-24
 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+P  +IG  ++ +  TG ++    VIG+ V I   VTL G           IG+GV IG
Sbjct: 105 INPDVRIGDNVIIN--TGAIVEHDCVIGDYVHIAPGVTLSG--------GVVIGEGVFIG 154

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
           AGATI+  V IG GA VGAG+VV  D+P     VG PA+
Sbjct: 155 AGATIIQGVTIGAGAVVGAGAVVTKDIPDGGVVVGVPAK 193

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 45/120 (37%), Positives = 55/120 (45%), Gaps = 27/120 (22%)

Query: 162 VDIHPAAKIGKGILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP---- 214
           V I    KIG     D+      V I E   I ++V I  +V        + D +P    
Sbjct: 11  VFIENDVKIG-----DNVKIQSNVSIYEGVTIEDDVFIGPNVVF------TNDLYPRSKI 59

Query: 215 ---------KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
                     +  G  IGA ATIL  V IGE A VGAG+VV  DVP  A  VGNPAR++G
Sbjct: 60  YRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 45/97 (46%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+P A+IG  ++ +  TG VIG   VIG+ V I   V L G           IG+G  IG
Sbjct: 111 INPDARIGDNVIIN--TGAVIGHDCVIGDFVHIAPGVVLSG--------GVTIGEGAFIG 160

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260
           AGATI+  V IG GA +GAG+VV  DVP  +  VGNP
Sbjct: 161 AGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 47/123 (38%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 156 ISDVFAVDIHPAAKIGKGILFDHATGVVI--GETAVIGNNVSILHHVTLG---------- 203
           I     +D+     +  G L      VVI  GE   IG+NV +  +VT+           
Sbjct: 55  IRPPVRIDL-GEKNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVT 113

Query: 204 -GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
              G   G     IG+ V IGAGA IL  V IGEGA +GAGSVV  DVP      GNPAR
Sbjct: 114 ANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPAR 173

Query: 263 LVG 265
           ++ 
Sbjct: 174 VIR 176

Length = 190

>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

 Score = 84.8 bits (211), Expect = 4e-20
 Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 174 ILFDHATGVVIGETAVIGNNVSIL---HHV--TLGGTGKASGDRHP-KIGDGVLIGAGAT 227
            + D A  V IG+  +IG NV I    H +       G       P  IGD V IG G  
Sbjct: 76  TILDVA-PVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYA--KPITIGDNVWIGGGVI 132

Query: 228 ILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           IL  V IG+ + +GAGSVV  D+PA   A GNPAR++
Sbjct: 133 ILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 169

>gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional

 Score = 81.1 bits (200), Expect = 7e-19
 Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 133 AHRVAH--KLWTQSR-------RPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVV 183
           A+RVAH   +W +          PL +  +      F  +I  AA IG+     H   VV
Sbjct: 4   AYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVV 63

Query: 184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243
           I +  V G++ +I H VT+G  G  +    P IG+GV +GA   ILG++ IG    VGAG
Sbjct: 64  INKNVVAGDDFTIRHGVTIGNRGADN-MACPHIGNGVELGANVIILGDITIGNNVTVGAG 122

Query: 244 SVVLIDVPARATAVGNPARL 263
           SVVL  VP  A  VG  AR+
Sbjct: 123 SVVLDSVPDNALVVGEKARV 142

Length = 146

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227
             IG+G+        VI    VIG+NV+I     +G     +      IGD V IGA A 
Sbjct: 1   VFIGEGVKIHP--KAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAV 58

Query: 228 ILGNVKIGEGAKVGAGSVVL 247
           I G VKIG+ A +GAG+VV 
Sbjct: 59  IHGGVKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|188531 TIGR04016, WcaB, colanic acid biosynthesis acetyltransferase WcaB

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 133 AHRVAH--KLWTQSR-------RPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVV 183
           A+R+AH   +W +          P+ +  +     +F  +I  AA IG+     H   VV
Sbjct: 4   AYRIAHFCSVWRKKNVLNNLWAAPVLVLYRLITECLFGYEIQAAATIGRRFTIHHGYAVV 63

Query: 184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243
           I +  V G++ +I H VT+G  G  S    P IG+GV +GA   ILG++ IG    +GAG
Sbjct: 64  INKNVVAGDDFTIRHGVTIGNRGADSL-ACPVIGNGVELGANVIILGDITIGNNVTIGAG 122

Query: 244 SVVLIDVPARATAVGNPARL 263
           SVVL  +P  A  VG  AR+
Sbjct: 123 SVVLDSIPDNALVVGEKARV 142

This gene is one of the acetyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species. Length = 146

>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

 Score = 73.3 bits (181), Expect = 4e-16
 Identities = 39/109 (35%), Positives = 48/109 (44%), Gaps = 26/109 (23%)

Query: 182 VVIGETAVIGNNVSILHHVTLGGTG---------------------KASGDRHP-----K 215
            V G+   IG   SI   V +G  G                      A  D  P      
Sbjct: 16  DVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVI 75

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           IG+ V IG GATIL  V IG+GA + AG+VV  DVP  A   GNPA+++
Sbjct: 76  IGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVI 124

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Length = 145

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+  A+IG+G + D     V+G  A +G NV I     L G  +    +   I D VLIG
Sbjct: 113 INIGAEIGEGTMID--MNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIG 170

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           A A IL  V++G+GA V AG++V  DVP      G PA+++
Sbjct: 171 ANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVI 211

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 17/91 (18%)

Query: 181 GVVI----GETAVIGNNVSILHHVTL-GGTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           G V+    G   +IG+NV++ H   L G T          IGD  LIG GA IL    IG
Sbjct: 50  GSVLHVDPGYPTIIGDNVTVGHGAVLHGCT----------IGDNCLIGMGAIILDGAVIG 99

Query: 236 EGAKVGAGSVVL--IDVPARATAVGNPARLV 264
           +G+ V AGS+V     +P  +   G+PA++V
Sbjct: 100 KGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV 130

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 65.3 bits (160), Expect = 8e-13
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 15/91 (16%)

Query: 181 GVVI----GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236
           GVVI    G    IG++V+I H   + G           IGD VLIG GAT+L    IG+
Sbjct: 62  GVVIHADPGYPVTIGDDVTIGHGAVVHGC---------TIGDNVLIGMGATVLDGAVIGD 112

Query: 237 GAKVGAGSVVL--IDVPARATAVGNPARLVG 265
           G+ VGAG++V    ++P  +  VG+PA++V 
Sbjct: 113 GSIVGAGALVTPGKEIPGGSLVVGSPAKVVR 143

Length = 176

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 65.5 bits (161), Expect = 2e-12
 Identities = 40/111 (36%), Positives = 51/111 (45%), Gaps = 17/111 (15%)

Query: 162 VDIHPAAKIGKGI-------LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP 214
           V IH     G G+       L      V +    VIGNNV + ++ TL G        H 
Sbjct: 90  VTIHRGTAQGGGVTRIGNNNLL--MAYVHVAHDCVIGNNVILANNATLAG--------HV 139

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
           +IGD  +IG  + +    +IG  A VG GS V+ DVP    A GN ARL G
Sbjct: 140 EIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRG 190

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 64.0 bits (157), Expect = 6e-12
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
           V+GN+V + ++ TL G        H ++GD  +IG    +   V+IG  A VG  S V  
Sbjct: 125 VVGNHVILANNATLAG--------HVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQ 176

Query: 249 DVPARATAVGNPARLVG 265
           DVP    A GNPARL G
Sbjct: 177 DVPPYVLAEGNPARLRG 193

Length = 262

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 189 VIGNNVSILHHVTL-GGTGKASGDRHP------KIGDGVLIGAGATILGNVKIGEGAKVG 241
            IG++  I     L  G+        P       IGDG  + A A +   V IGEGA VG
Sbjct: 25  TIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVG 84

Query: 242 AGSVVLIDVPARATAVGNPARLV 264
           A SVV+ D+PA     GNPA  V
Sbjct: 85  ARSVVVRDLPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P+AKIG+G+        VIG   VIG+ V I     +G           KIG    + 
Sbjct: 109 IDPSAKIGEGVSIGP--NAVIGAGVVIGDGVVIGAGAVIG--------DGVKIGADCRLH 158

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           A  TI   V+IG    + +G+V+
Sbjct: 159 ANVTIYHAVRIGNRVIIHSGAVI 181

Length = 343

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 14/96 (14%)

Query: 155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP 214
           R++ +F     P+   G      H + V I  +A IG  VSI  +  +G           
Sbjct: 86  RLAQLFDPPATPSPAAGI-----HPSAV-IDPSAKIGEGVSIGPNAVIG--------AGV 131

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
            IGDGV+IGAGA I   VKIG   ++ A   +   V
Sbjct: 132 VIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAV 167

Length = 343

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
           VIGNN  + ++ TL G        H ++GD  +IG  + +   V+IG  A +G  S V  
Sbjct: 126 VIGNNCILANNATLAG--------HVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQ 177

Query: 249 DVPARATAVGNPARLVG 265
           DVP    A GN ARL G
Sbjct: 178 DVPPYVIASGNHARLRG 194

Length = 260

>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 31/124 (25%)

Query: 168 AKIGKGIL------FDHATGVVIGETAVIGNNVSI--LHHVTLGG-----------TGKA 208
           AKIGKG++        +   + IG+ A IG++V +  L  +T+G            TG  
Sbjct: 52  AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTG-- 109

Query: 209 SGD----------RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           S D              IG+G  + A   +   V IG GA VGA S V   +PA     G
Sbjct: 110 SHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRG 169

Query: 259 NPAR 262
           NPA 
Sbjct: 170 NPAV 173

Length = 182

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 162 VDIHPAAKIGKG--ILFDHA---TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKI 216
           V I+     G G   + ++        I    V+GN+V + ++ TL G        H ++
Sbjct: 89  VTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAG--------HVEV 140

Query: 217 GDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
           GD  +IG    +   V+IG  A +G  S V  DVP    A GN ARL G
Sbjct: 141 GDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYCLAEGNRARLRG 189

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 24/54 (44%), Positives = 29/54 (53%)

Query: 211 DRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            +   IG  V IG GA IL  V IG GA + AG+VV  DV       G PA+L+
Sbjct: 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLI 159

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG-GTGKASGDR---HPKIG 217
           V+I     I +G L D     VIGE   I N V I H+V +G     A         KIG
Sbjct: 209 VEIGANTTIDRGALDD----TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIG 264

Query: 218 DGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
             V+IG    I G+++IG+G  +GA S V+  +     + G PA+
Sbjct: 265 KYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQ 309

Length = 338

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 57.0 bits (139), Expect = 8e-10
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           VIG+   I N V I H+V +G         G A       IGD V+IG    I G++ IG
Sbjct: 116 VIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAG---STTIGDNVIIGGQVGIAGHLTIG 172

Query: 236 EGAKVGAGSVVLIDVPARATAVGNPAR 262
           +G  +GAGS V   VP      G PA+
Sbjct: 173 DGVVIGAGSGVTSIVPPGEYVSGTPAQ 199

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227
           AKIG+ +        VIGE  VIG+ V I   V +G            IGD  +I    T
Sbjct: 2   AKIGENVSIGP--NAVIGEGVVIGDGVVIGPGVVIG--------DGVVIGDDCVIHPNVT 51

Query: 228 ILGNVKIGEGAKVGAGSVV 246
           I     IG+   + +G+V+
Sbjct: 52  IYEGCIIGDRVIIHSGAVI 70

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 51.6 bits (125), Expect = 2e-09
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246
              IG+ VLIG    I G V IG+   +GAG V+
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVI 34

Length = 36

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSI-LHHVTLGGTGKASGDRHPK-IGDGVLIGAG 225
           + IG+     H T   +G+ A +G NV+I    +T    GK    ++P  I DG  IG+ 
Sbjct: 342 STIGENTKAQHLT--YLGD-ATVGKNVNIGAGTITCNYDGKK---KNPTFIEDGAFIGSN 395

Query: 226 ATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           ++++  V+IG+GA +GAGSV+  DVP  + A+G
Sbjct: 396 SSLVAPVRIGKGALIGAGSVITEDVPPYSLALG 428

Length = 448

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A IGK +       VVIG   VIG NV I     +G         + KIGDG +I 
Sbjct: 108 IDPTATIGKNV--SIGPNVVIGAGVVIGENVVIGAGAVIG--------ENVKIGDGTVIH 157

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
              TI  NV IG    + +G+V+
Sbjct: 158 PNVTIYHNVVIGNNVIIHSGAVI 180

Length = 338

>gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 170 IGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTG-------KASGDRHP---KIGDG 219
           IG+    +    +V   T  IG+NV I  +VTL  TG       + +G+ +     IG+ 
Sbjct: 78  IGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           V IG+   I   V IG+ + +GAGSVV  D+P    A G P R++
Sbjct: 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVI 182

Length = 203

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            IGD V IG+ + ++  V IG+GA + AGS +  DVP  A A+ 
Sbjct: 146 VIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIA 189

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 53.9 bits (131), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           + P AKIG+         V IG   VIG NV                     IGDG +IG
Sbjct: 11  VEPGAKIGEN--------VEIGPFCVIGPNV--------------------VIGDGTVIG 42

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           +   I G+  IG+  ++   + +
Sbjct: 43  SHVVIDGHTTIGKNNRIFPFASI 65

Length = 262

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           + P AKIG+         V IG   VIG NV                    +IGDG +IG
Sbjct: 8   VDPGAKIGEN--------VEIGPFCVIGPNV--------------------EIGDGTVIG 39

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           +   I G   IG+  ++   + +
Sbjct: 40  SHVVIDGPTTIGKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP-KIGDGVLIGAGA 226
           A  G+G + D      +G  A +G N  I    ++GG        +P  IGD  LIGA +
Sbjct: 139 AGTGEGTMVD--GRASVGSCAQVGKNSHIGGGASIGGV-LEPLQANPVIIGDNCLIGANS 195

Query: 227 TILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            ++  V +G+G  V AG  +  D        G  A  V
Sbjct: 196 EVVEGVIVGDGCVVAAGVFITQDTKIYDRVAGRVAGSV 233

Length = 271

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG-GTGKASGD---RHP-KIGDGVLI 222
           A+IGKG    H +   +G+ A IG+NV+I      G GT   + D   +H   IGDGV I
Sbjct: 349 ARIGKGSKAGHLS--YLGD-AEIGSNVNI------GAGTITCNYDGANKHKTIIGDGVFI 399

Query: 223 GAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260
           G+   ++  VK+G+GA + AGS V  DVP  A A+   
Sbjct: 400 GSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRA 437

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 18/110 (16%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227
           A + +G + D  +   +G  A IG NV +     +GG  +        I D V IGA   
Sbjct: 32  AYVDEGTMVD--SWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCE 89

Query: 228 ILGNVKIGEGAKVGAGSVV-----LID----------VPARATAV-GNPA 261
           ++  V +G+GA + AG V+     + D          VP  +  V G+  
Sbjct: 90  VVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVVVAGSLP 139

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. Length = 139

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           +IGE   I N V I H+  +G         G A      KIG  V+IG    + G+++IG
Sbjct: 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGS---TKIGRNVIIGGQVGVAGHLEIG 275

Query: 236 EGAKVGAGSVVLIDVPARATAVGNPAR 262
           +   +GA S V   +P      G PAR
Sbjct: 276 DNVTIGAKSGVTKSIPPPGVYGGIPAR 302

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 23/50 (46%), Positives = 27/50 (54%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            IG  V IG   TIL  V IG G  VGA SVV   +P      GNPA+++
Sbjct: 132 VIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKII 181

Length = 192

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 20/99 (20%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG-GT------GKASGDRHP-KIGDG 219
           A IGKG    H T   +G+ A IG NV+I      G GT      GK   ++    IGD 
Sbjct: 356 ATIGKGSKAGHLT--YLGD-AEIGENVNI------GAGTITCNYDGK---NKFKTIIGDN 403

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           V IG+ + ++  V IG+GA + AGS +  DVP  A A+ 
Sbjct: 404 VFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAIS 442

Length = 460

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           VIGE   I N V I H+V +G         G A      KIG   +IG    I G+++IG
Sbjct: 227 VIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS---TKIGRYCMIGGQVGIAGHLEIG 283

Query: 236 EGAKVGAGSVVLIDVPARATAVGN-PAR 262
           +G  + A S V   +P         PA+
Sbjct: 284 DGVTITAMSGVTKSIPEPGEYSSGIPAQ 311

Length = 343

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 164 IHPAAKIGK-GILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDG 219
           IHP A +     + D  T    VVIG    IG NV I   V +G            IGDG
Sbjct: 94  IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIG--------DDVVIGDG 145

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVV 246
             I     I   V++G+   + +G+V+
Sbjct: 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 164 IHPAAKIGKG-ILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTG---KASGDRHPK- 215
           I P   IG G ++ D       V I E  +IG+ V I     +G  G      G    K 
Sbjct: 28  IGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKI 87

Query: 216 -------IGDGVLIGAGATI----LGNVKIGEGAKV 240
                  IGD V IGA  TI    LG+  IG+G K+
Sbjct: 88  PQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKI 123

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 33/118 (27%)

Query: 164 IHPAAKIGKGILFDHATGVVIG-----ETAVIGNNVSILH-----------HVTLG-GT- 205
           + P + IG+         V IG     + + IG    + H           +V +G GT 
Sbjct: 331 LRPGSVIGEE--------VKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTI 382

Query: 206 -----GKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
                GK        IGD   IG  + ++  V +G+ A + AGS +  DVP  A A+ 
Sbjct: 383 TVNYDGKNK--FKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIA 438

Length = 458

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 38/103 (36%), Positives = 45/103 (43%), Gaps = 29/103 (28%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P+AK+G G        V IG  AVIG NV I                    GDG  IG
Sbjct: 8   IDPSAKLGSG--------VEIGPFAVIGANVEI--------------------GDGTWIG 39

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266
             A ILG  +IG+  K+  G+VV  D P   T  G  +RL  G
Sbjct: 40  PHAVILGPTRIGKNNKIHQGAVVG-DEPQDFTYKGEESRLEIG 81

Length = 255

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 11/77 (14%)

Query: 190 IGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL-- 247
           IG+ V+I H+  + G          K+G+ V++G GA +L   KIG+   +GAG+VV   
Sbjct: 64  IGDYVTIGHNAVVHGA---------KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114

Query: 248 IDVPARATAVGNPARLV 264
            ++P  +  +G PA++V
Sbjct: 115 KEIPDYSLVLGVPAKVV 131

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 22/49 (44%), Positives = 28/49 (57%)

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           IG+ V IG  A I   V IG+   V +G+VV  DVP      GNPAR++
Sbjct: 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARII 180

Length = 183

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246
           +A IG NVSI  +  +G            IGDGV+IG G  I   V IG+   +     +
Sbjct: 1   SAKIGENVSIGPNAVIG--------EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTI 52

Query: 247 LIDV 250
               
Sbjct: 53  YEGC 56

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 43/119 (36%)

Query: 160 FAVDIHPAAKIGKG-ILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK 215
            AV I     IG G ++        GVVIG+  VI  NV+I                   
Sbjct: 13  NAV-IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCI-------------- 57

Query: 216 IGDGVLIGAGATI-------------------LGNVKIGEGAKVGAGSVVLIDVPARAT 255
           IGD V+I +GA I                   LG V IG+  ++GA +   ID   R  
Sbjct: 58  IGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTT--ID---RGA 111

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 25/105 (23%)

Query: 162 VDIHPAAKIGKG-ILFDHAT---------GVVIGETAVIGNNVSILHHVTLG--GTGKAS 209
           V I     IG G ++ ++            V I    VIGNNV I     +G  G G A 
Sbjct: 130 VVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAG 189

Query: 210 GDR---------HPKIGDGVLIGAGATI----LGNVKIGEGAKVG 241
                          IGD V IGA  TI    L +  IGEG K+ 
Sbjct: 190 TAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKID 234

Length = 338

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A+IG+         V IG   +IG NV                    +IGDG ++ 
Sbjct: 12  IEPGAEIGED--------VKIGPFCIIGPNV--------------------EIGDGTVLK 43

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           +   + G+  IG   ++   + +
Sbjct: 44  SHVVVEGHTTIGRNNRIFPFASI 66

Length = 260

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A+IG+         V IG   ++G  V                    KIGDGV + 
Sbjct: 7   IEPGAEIGEN--------VEIGPFCIVGPGV--------------------KIGDGVELK 38

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           +   ILG+  IGEG ++  G+V+
Sbjct: 39  SHVVILGHTTIGEGTRIFPGAVI 61

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 42.4 bits (101), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 14/50 (28%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG 230
           G VIGE  +IG NV I   V               IGD V+IGAG  I G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVI--------------IGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 29/106 (27%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKAS-----GDRH----PKIG--------DGVL-- 221
           G  +GE A +GN V +  +  LG   K +     GD        IG        DG    
Sbjct: 321 GAELGEGAKVGNFVEV-KNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKH 379

Query: 222 ---IGAGATILGN------VKIGEGAKVGAGSVVLIDVPARATAVG 258
              IGAGA I  N      V IG+GA + +GSV+  DVP  A A+G
Sbjct: 380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALG 425

Length = 446

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDR----HPKIGDGVLIG 223
           AKIGKG+    +   V  +   IG    +   V L G  +A   R       +G    IG
Sbjct: 113 AKIGKGV-DIGSLPPVCTDLLTIGAGTIVRKEVMLLGY-RAERGRLHTGPVTLGRDAFIG 170

Query: 224 AGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPG 278
             +T+  +  IG+GA++G GS +     +P      G+PA+  G   +         
Sbjct: 171 TRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGADYRKVQPARPYT 227

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 22/86 (25%)

Query: 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGV 220
           A  IHP A I             IG+   IG NV I   V               IG+ V
Sbjct: 99  AAGIHPTAVI--------DPTATIGKNVSIGPNVVIGAGV--------------VIGENV 136

Query: 221 LIGAGATILGNVKIGEGAKVGAGSVV 246
           +IGAGA I  NVKIG+G  +     +
Sbjct: 137 VIGAGAVIGENVKIGDGTVIHPNVTI 162

Length = 338

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
           L D  T   I     IG +V I   V L G           IG+  +IG    ++ +  I
Sbjct: 4   LIDPET-TYIDGDVEIGVDVVIDPGVILEG--------KTVIGEDCVIGPN-CVIKDSTI 53

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARL 263
           G+G  + A SV+   V      VG  A L
Sbjct: 54  GDGVVIKASSVIEGAVIGNGATVGPFAHL 82

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 168 AKIGKGILFDHATGV---VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGA 224
           A IG+G    H T V    IGE + IG + S+   V   G  K        IG  V  G+
Sbjct: 358 ATIGRGTKVPHLTYVGDADIGEHSNIGAS-SVF--VNYDGVNK----HRTTIGSHVRTGS 410

Query: 225 GATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGG 266
               +  V +G+GA  GAG+V+  DVP  A AV   P R + G
Sbjct: 411 DTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEG 453

Length = 482

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           IG+G  IG+   ++  V IG+GA VGAGSV+  DVP  + A+ 
Sbjct: 401 IGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIA 443

Length = 456

>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247
            +IG+NV+I H   L G           + D   +G GAT+L  V + + A V AG++V 
Sbjct: 120 TIIGDNVTIGHSAVLHGC---------TVEDEAFVGMGATLLDGVVVEKHAMVAAGALVR 170

Query: 248 ID--VPARATAVGNPAR 262
            +  +P+     GNPA+
Sbjct: 171 QNTRIPSGEVWAGNPAK 187

Length = 269

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 21/69 (30%)

Query: 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI-----LGNVKIGEG 237
           +IGE+ VIG N  I + V               IGD V IG G TI     + NV IG  
Sbjct: 1   LIGESTVIGENAIIKNSV---------------IGDNVRIGDGVTITNSILMDNVTIGAN 45

Query: 238 AKVGAGSVV 246
           + +   S++
Sbjct: 46  SVI-VDSII 53

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 12/80 (15%)

Query: 184 IGETAVIGNNVSILHHVTLG-GTGKASGD---RHP-KIGDGVLIGAGATILGNVKIGEGA 238
           IG+ A +G  V+I      G GT  A+ D   +H   IGD    GA + ++  + +GE  
Sbjct: 363 IGD-ATLGEQVNI------GAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDV 415

Query: 239 KVGAGSVVLIDVPARATAVG 258
            V AGS +  DVP  + A+ 
Sbjct: 416 TVAAGSTITKDVPDNSLAIA 435

Length = 450

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG--------DRHPK 215
           I P AKIG G L       VIGE   IGN V I + + +       G          + K
Sbjct: 264 IGPGAKIGPGALIG--PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCK 321

Query: 216 IGDG-----VLIGAGATILGNVKIGEGAKVGAGSVV 246
           IG       V+IG  + IL  V +G G+ V +G + 
Sbjct: 322 IGASLIIGDVVIGINSEILPGVVVGPGSVVESGEIE 357

Length = 358

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 23/85 (27%)

Query: 170 IGKGILFDHATGV---VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
           IG+G      T +   VIG    IG NV I                +  I D V I  G 
Sbjct: 2   IGRGTSIGEGTTIKNSVIGRNCKIGKNVVI---------------DNSYIWDDVTIEDGC 46

Query: 227 TILG-----NVKIGEGAKVGAGSVV 246
           TI          IG+G  +  GS++
Sbjct: 47  TIHHSIVADGAVIGKGCTIPPGSLI 71

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 20/100 (20%)

Query: 161 AVDIHPAAKIGKG-ILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTG----KASGDR 212
            V I P   IG   ++ D +     VVI E   +G NV I     +G  G      +   
Sbjct: 127 NVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGG 186

Query: 213 HPKI--------GDGVLIGAGATI----LGNVKIGEGAKV 240
           H KI         D V IGA  TI      +  IGEG K+
Sbjct: 187 HVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKI 226

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243
           I     IG +V I  +V L G        +  IGD V+IG G +++ +  IG+ A + A 
Sbjct: 265 IRGDVEIGRDVVIEPNVILEG--------NTVIGDNVVIGPG-SVIKDSVIGDNAVIKAY 315

Query: 244 SVVLIDVPARATAVGNPARLVGG 266
           SV+          VG  ARL  G
Sbjct: 316 SVIEGSTVGEGATVGPFARLRPG 338

Length = 460

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 168 AKIGKGILFDHA-----TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLI 222
            KIG+G+  D         V IG+ + +     I  H+      K+       IGDG  +
Sbjct: 598 VKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVT---IGDGATL 654

Query: 223 GAGATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPA 261
           G GA +L  V +GEG+ +G  S+V+   +VPA     GNPA
Sbjct: 655 GPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA 695

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|236996 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 21/107 (19%)

Query: 168 AKIGKGILFD-HATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
           A + +G + D  AT   +G  A IG NV +   V +GG  +        I D   IGA +
Sbjct: 133 AYVDEGTMVDTWAT---VGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARS 189

Query: 227 TILGNVKIGEGAKVGAGSVVL------ID----------VPARATAV 257
            ++  V + EG+ +G G V L       D          VPA +  V
Sbjct: 190 EVVEGVIVEEGSVLGMG-VFLGQSTKIYDRETGEVHYGRVPAGSVVV 235

Length = 272

>gnl|CDD|234432 TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 38/175 (21%)

Query: 141 WTQSRRPLALALQSRISDVFAVDIH-----PAAKIGKGILFD--------------HATG 181
           +   R PL L  +    D   V+         A  GK I  D                + 
Sbjct: 57  YLAGRYPLVLVNRLLEVDALLVNGRLLPWDLIATNGKAIERDFELLTEGRKSIPVHDGSV 116

Query: 182 VVIGETAV-IGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           VV+  + V I    ++     L  +          IG    I   + + G V IG GA+V
Sbjct: 117 VVVNPSHVFIEEGATVRPGAVLDASDGPI-----YIGKDARIEPFSFLEGPVYIGPGARV 171

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTS-----SNEECPGESMDHTSFISEW 290
            AG+ +        T++G   + +GG+ + S     SN+   G  + H S++  W
Sbjct: 172 KAGARI-----YGGTSIGPTCK-IGGEVENSIIEGYSNKHHDG-FLGH-SYLGSW 218

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Homologs of this enzyme are identified in a number of bacterial organisms and modeled here. A number of these are observed in proximity to the GlmS and GlmM genes, and phylogenetic profiling by PPP identifies the LEPBI_I0518 gene in Leptospira biflexa as a likely Glm-system candidate. Multiple sequence alignments of these bacterial homologs with their archaeal counterparts reveals significant structural differences, necessitating the construction of separate models. Length = 337

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
           E + IG NV++L+ V              +IGDGV IG  A +    +IG   ++G
Sbjct: 296 ENSQIGENVTVLYSVV----------SDSQIGDGVKIGPYAHLRPEAQIGSNCRIG 341

Length = 450

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDR--HPKIGDGVLIGAGATILG-----NVK 233
             VIGE A+I N+V I  +V +G      G    +  + D V IGA + I+      N  
Sbjct: 5   STVIGENAIIKNSV-IGDNVRIG-----DGVTITNSILMDNVTIGANSVIVDSIIGDNAV 58

Query: 234 IGEGAKVGAGSVV 246
           IGE  +V    ++
Sbjct: 59  IGENVRVVNLCII 71

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243
           I  T  IG +V I  +V L G          KIGD V+IG G  ++ N  IG    + A 
Sbjct: 258 IRGTVEIGRDVEIDPNVILEG--------KVKIGDDVVIGPG-CVIKNSVIGSNVVIKAY 308

Query: 244 SVVLIDVPARATAVGNPARLVGGKE 268
           SV+          VG  ARL  G  
Sbjct: 309 SVLEGSEIGEGCDVGPFARLRPGSV 333

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT--GKASGDRHPKIGDGVL 221
           I  +  IG+  +  +    VIG+   IG+ V+I + + +     G  S      IGD  +
Sbjct: 2   IGESTVIGENAIIKN---SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAV 58

Query: 222 IGAGATILGNVKIGEGAKVGA 242
           IG    ++    IG+   V  
Sbjct: 59  IGENVRVVNLCIIGDDVVVED 79

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 39.3 bits (93), Expect = 8e-04
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 28/104 (26%)

Query: 155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP 214
            + D     I    +IG  ++ D   GV++    VIG +  I  +  +  +         
Sbjct: 3   TLIDPETTYIDGDVEIGVDVVIDP--GVILEGKTVIGEDCVIGPNCVIKDS--------- 51

Query: 215 KIGDGVLIGA-----GATILGNVKIG------------EGAKVG 241
            IGDGV+I A     GA I     +G            EG  +G
Sbjct: 52  TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIG 95

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 25/120 (20%)

Query: 144 SRRPLALA---LQSRISD------VFAVD-----IHPAAKIGK------GILFDHATGVV 183
            R  LA A   ++ RI++      V  +D     I    +IG       G++    T  V
Sbjct: 228 DRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNT--V 285

Query: 184 IGETAVIGNNVSILHHVTLGG--TGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
           IGE  VIG   S +   T+G   T   S     K+GD V +G  A +     IGE  K+G
Sbjct: 286 IGEDCVIGPG-SRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIG 344

Length = 458

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 19/79 (24%)

Query: 163 DIHPAAKIGKGILFDHATGV-----VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIG 217
           +I   A IG G +  +  GV     VIGE A IG+N +++  VT              IG
Sbjct: 375 EIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVT--------------IG 420

Query: 218 DGVLIGAGATILGNVKIGE 236
           DG L+GAG+ I  +V  G 
Sbjct: 421 DGALVGAGSVITKDVPDGS 439

Length = 456

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           GVVIG    I   V I            SGD   +IG+G  I  G  I G  +IG+   V
Sbjct: 268 GVVIGRDTTIYPGVCI------------SGD--TRIGEGCTIEQGVVIKG-CRIGDDVTV 312

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKE 268
            AGSV+   V     A+G  A L  G E
Sbjct: 313 KAGSVLEDSVVGDDVAIGPMAHLRPGTE 340

Length = 459

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 21/96 (21%)

Query: 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
            V+ E   IG+  +ILH  T              IG   L+G  A ++    IGE + VG
Sbjct: 62  TVLEENGHIGHG-AILHGCT--------------IGRNALVGMNAVVMDGAVIGEESIVG 106

Query: 242 AGSVVL--IDVPARATAVGNPARLVGGKEKTSSNEE 275
           A + V     +P R+   G+PA+++    +  S+EE
Sbjct: 107 AMAFVKAGTVIPPRSLIAGSPAKVI----RELSDEE 138

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK----IGDGVLIG 223
           A++GKG    H T   +G+ A IG+NV+I       GT   + D   K    IGD V +G
Sbjct: 353 ARLGKGSKAGHLT--YLGD-AEIGDNVNIG-----AGTITCNYDGANKFKTIIGDDVFVG 404

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPA 252
           +   ++  V +G+GA +GAG+ V  DV  
Sbjct: 405 SDTQLVAPVTVGKGATIGAGTTVTRDVAE 433

Length = 456

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 211 DRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
              PKI     +   AT++G+V+IG G  +  G+V+  DV
Sbjct: 9   GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV 48

Length = 176

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 179 ATGVVIGETAVIGNNVSILHHVTLG-GTGKASGD----RHPKIGDGVLIGAGATILGNVK 233
             GV  G  A +G+ V+I     +G GT  A+ D       K+G GV IG+  T++    
Sbjct: 361 DAGVKAGHLAYLGD-VTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRV 419

Query: 234 IGEGAKVGAGSVVLIDVPARATAV 257
           +G+ A + AGS V  DVP  A AV
Sbjct: 420 VGDAAFIAAGSAVHDDVPEGAMAV 443

Length = 481

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVL 221
           V+I P A IG     +     +IG+   IG N  I   V              KIGD  +
Sbjct: 25  VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGV--------------KIGDNAV 70

Query: 222 IGAGATIL 229
           IGAGA + 
Sbjct: 71  IGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PLN02694	294	serine O-acetyltransferase	100.0
PLN02357	360	serine acetyltransferase	100.0
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	100.0
PLN02739	355	serine acetyltransferase	100.0
PRK11132	273	cysE serine acetyltransferase; Provisional	100.0
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	100.0
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.97
PF06426	105	SATase_N: Serine acetyltransferase, N-terminal ; I	99.88
PRK10191	146	putative acyl transferase; Provisional	99.87
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.86
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.86
PRK10092	183	maltose O-acetyltransferase; Provisional	99.86
PLN02739	355	serine acetyltransferase	99.85
PLN02694	294	serine O-acetyltransferase	99.84
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.8
PRK10502	182	putative acyl transferase; Provisional	99.8
PLN02357	360	serine acetyltransferase	99.79
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.78
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.77
PRK11132	273	cysE serine acetyltransferase; Provisional	99.76
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.74
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.73
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.72
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.71
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.7
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.7
PRK13627	196	carnitine operon protein CaiE; Provisional	99.68
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.67
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.67
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.66
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.66
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.66
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.64
PLN02296	269	carbonate dehydratase	99.63
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.63
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.63
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.62
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.62
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.62
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.61
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.61
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.6
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.59
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.59
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.58
PLN02472	246	uncharacterized protein	99.56
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.55
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.54
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.54
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.52
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.49
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.47
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.47
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.45
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.44
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.43
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.43
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.42
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.42
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.42
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.41
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.41
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.41
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.41
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.36
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.36
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.35
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.33
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.32
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.32
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.32
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.31
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.29
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.28
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.28
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
PRK10502	182	putative acyl transferase; Provisional	99.27
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.27
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.26
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.25
PRK10092	183	maltose O-acetyltransferase; Provisional	99.25
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.24
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.24
PRK13627	196	carnitine operon protein CaiE; Provisional	99.23
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.22
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.22
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.22
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.21
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.2
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.18
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.17
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.16
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.15
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.15
PLN02472	246	uncharacterized protein	99.12
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.12
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.12
PLN02296	269	carbonate dehydratase	99.12
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.11
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.09
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.09
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.08
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.04
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.02
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.0
PRK10191	146	putative acyl transferase; Provisional	98.99
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	98.99
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	98.97
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	98.97
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	98.96
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	98.93
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	98.93
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	98.92
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	98.91
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	98.91
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.9
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	98.89
COG1043	260	LpxA Acyl-[acyl carrier protein]	98.88
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	98.88
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.88
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.88
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.87
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	98.87
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.87
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.86
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.85
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	98.85
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	98.81
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.8
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.8
KOG1461	673	consensus Translation initiation factor 2B, epsilo	98.78
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.77
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	98.77
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	98.77
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	98.76
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.75
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	98.75
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	98.73
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	98.71
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.7
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	98.7
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.68
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	98.67
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.58
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.51
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.5
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.49
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.44
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.4
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.38
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	98.37
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.35
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.31
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.28
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.26
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.25
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.24
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.22
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	98.19
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.17
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.12
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.12
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.1
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.09
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.08
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.06
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.05
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.03
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	97.95
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	97.85
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	97.85
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	97.78
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	97.75
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.72
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.71
PF06426	105	SATase_N: Serine acetyltransferase, N-terminal ; I	97.67
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	97.63
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	97.38
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	97.1
COG4801	277	Predicted acyltransferase [General function predic	96.33
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	96.23
COG4801	277	Predicted acyltransferase [General function predic	95.86

>PLN02694 serine O-acetyltransferase

Probab=100.00  E-value=1.4e-63  Score=451.97  Aligned_cols=293  Identities=90%  Similarity=1.376  Sum_probs=270.9

Q ss_pred             CCCCCCCCCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccch
Q 039045            1 MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLS   80 (295)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~   80 (295)
                      ||.++.....|...  ........+.+++|++||.||+..+++||+|++|++.+||+|++|+++|+|+||++|.+..|++
T Consensus         2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~~l~~~~~~~   79 (294)
T PLN02694          2 MPAGELRHPSPPKT--NSATTADEEAAWLWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLS   79 (294)
T ss_pred             CCCCCCCccCCCCC--CCCccccccchHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCcCHHHHHHHHHHHHhCCCcCCH
Confidence            56666555433222  2233445555679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccce
Q 039045           81 TLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF  160 (295)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~  160 (295)
                      .+|.++|.++|.++|++++.+..|+.+...+||+|..++.++++|+||++++.||++||||..+++.++..++.+++..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~D~~a~~~rdpa~~~~~~~~l~~~Gf~Al~~yR~ah~l~~~~~~~la~~~~~~~~~~~  159 (294)
T PLN02694         80 TLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRISDVF  159 (294)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCccccchhhhhhcCHhHHHHHHHHHHHHHHHCCChhHHHHHHHhcccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      +++||+++.||++++|+|+++++||++|+||+||+|++++++|+.+...+.++++||++|+||+|++|+++++||++|+|
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~I  239 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI  239 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEE
Confidence            99999999999999999999999999999999999999999999888777899999999999999999999999999999


Q ss_pred             CCCCEEcCCCCCCcEEEccCcEEecCCCCCCCCCCCCCccccccccccccccccC
Q 039045          241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII  295 (295)
Q Consensus       241 gagsvV~~~Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  295 (295)
                      |+|++|++|||++++++|+||+++++...+.....+|+..|||+++..+|+||.|
T Consensus       240 GAgSVV~kdVP~~~~v~G~PAkiv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~  294 (294)
T PLN02694        240 GAGSVVLIDVPPRTTAVGNPARLVGGKEKPAKHEECPGESMDHTSFISEWSDYII  294 (294)
T ss_pred             CCCCEECCcCCCCcEEEccCcEEEccCCCcccccCCcchhhcccccccccccccC
Confidence            9999999999999999999999999865444445779999999999999999987

>PLN02357 serine acetyltransferase

Probab=100.00  E-value=3.1e-60  Score=440.80  Aligned_cols=274  Identities=65%  Similarity=1.069  Sum_probs=262.7

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHH
Q 039045           22 AGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAA  101 (295)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  101 (295)
                      ..++.+++|++||+||+..+++||+|++||+.+||+|++|+++|+|+||++|.+..|++.+|++++.+.+..+|++.+.+
T Consensus        87 ~~~~~~~~w~~~r~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~kl~~~~~~~~~~~el~~~aL~~DpdI~e~I  166 (360)
T PLN02357         87 DLDRDDDVWLKIQEEAKSDVEQEPILSSYYYASILSHRSLESALANHLSVKLSNLNLPSNTLFDLFIGVLEESPEIIESV  166 (360)
T ss_pred             cccccchHHHHHHHHHHHHHhcCchHHHHHHHHccCCccHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHhhCHHHHHHH
Confidence            33456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcC
Q 039045          102 VADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG  181 (295)
Q Consensus       102 ~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~  181 (295)
                      ..|+.+..++||++..++.++++++||++++.||++||||..+++.++..++.++...++++||+++.||+|++|+|+++
T Consensus       167 raDLaAI~eRDPAciSFL~~~l~~kGf~al~~~Riah~l~~~~~~~la~~i~~~~~~~f~vdI~p~a~IG~Gv~Idh~~g  246 (360)
T PLN02357        167 KQDLRAVKERDPACISYVHCFLNFKGFLACQAHRIAHKLWTQGRKILALLIQNRVSEAFAVDIHPGAKIGQGILLDHATG  246 (360)
T ss_pred             HHHHHHHHccCcchhhhhHHHhhCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhceeeCCCCEECCCeEECCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045          182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA  261 (295)
Q Consensus       182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA  261 (295)
                      ++||++++||+||+|+++|+||+.+...++++++||++|+||+|++|.++++||++++||+|++|.+|||++++++|+||
T Consensus       247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PA  326 (360)
T PLN02357        247 VVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPA  326 (360)
T ss_pred             eEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCe
Confidence            99999999999999999999999888878889999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCccccccccccccccccC
Q 039045          262 RLVGGKEKTSSNEECPGESMDHTSFISEWSDYII  295 (295)
Q Consensus       262 ~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  295 (295)
                      |++++.....+...+|++.|||++++.+|+||.|
T Consensus       327 rvv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~  360 (360)
T PLN02357        327 RLIGGKENPIKHDKIPSLTMDQTSHISEWSDYVI  360 (360)
T ss_pred             EEEccCCCccccccCCCccccchhcccchhhccC
Confidence            9999876554445689999999999999999987

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-59  Score=404.39  Aligned_cols=255  Identities=66%  Similarity=1.029  Sum_probs=249.8

Q ss_pred             HHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 039045           28 WVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRA  107 (295)
Q Consensus        28 ~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~  107 (295)
                      .+|.++|+||+.-++.||.+++++++.|++|.++++++++.|+.+|.+..+++.+++++|...+..+|.+++.+..|+.+
T Consensus        15 ~iw~kir~ea~~~~e~ep~ls~~ly~~Ils~~~le~~l~~~L~~~l~~~tl~s~~l~~lf~~~~~~d~~i~~s~~~dl~a   94 (269)
T KOG4750|consen   15 MIWTKIREEAKKDAEYEPILSSYLYASILSHLTLERALAFVLANRLNNTTLLSENLGDLFLSVLRADPLIRESVFDDLDA   94 (269)
T ss_pred             hhHHHHHHHHHhhhhhchhhhhhHHHHhccHhHHHHHhhHHHHHhhccccccHhhhhhHhHHHhccCHHHHHHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC
Q 039045          108 ARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET  187 (295)
Q Consensus       108 ~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~  187 (295)
                      +..+||+|.+|.++++.++||+|.|.||++|.+|.+++..++..++++++..|+++|||.++||+|..++|+++++||++
T Consensus        95 ~~~rdPac~dy~s~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~ris~~~gvdihpaa~ig~gilldhatgvvigeT  174 (269)
T KOG4750|consen   95 FKIRDPACIDYGSNILHGKGFLANQAYRIAHNLWTQDRKILALGLQVRISPNFGVDIHPAAKIGKGILLDHATGVVIGET  174 (269)
T ss_pred             hccCCcchhhhHHHhHhcccHhhhhHHHhhhhheecCCeeEEEeecceecccccccccchhhcccceeeccccceeecce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      ++||++|+|.+++++|++++..++|||+|||||+||++++|++||+||+|++||+||+|++|||++++.+|+|||++++.
T Consensus       175 Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnPAklIg~~  254 (269)
T KOG4750|consen  175 AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGKI  254 (269)
T ss_pred             eEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCceecCCchhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCCCCCCccccccccc
Q 039045          268 EKTSSNEECPGESMDHTSFI  287 (295)
Q Consensus       268 ~~~~~~~~~p~~~~~~~~~~  287 (295)
                      +     ...|.+.|||+.|+
T Consensus       255 ~-----e~~p~ltm~~~~~~  269 (269)
T KOG4750|consen  255 D-----EKDPGLTMDHTSFI  269 (269)
T ss_pred             c-----ccCCcccccccccC
Confidence            5     45799999999764

>PLN02739 serine acetyltransferase

Probab=100.00  E-value=5.9e-58  Score=422.55  Aligned_cols=255  Identities=57%  Similarity=0.929  Sum_probs=247.4

Q ss_pred             hHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHH
Q 039045           26 EAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADL  105 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl  105 (295)
                      .+++|++||+||+..+++||+|++||+++||+|++|+++|+|+||++|.+..|++.+|.++|.+++.++|++++.++.|+
T Consensus        70 ~~~~W~~~r~ea~~~~~~ep~l~~~~~~~il~h~~~~~al~~~la~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl  149 (355)
T PLN02739         70 YDPIWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFCNVMVHDRGIQSSIRLDV  149 (355)
T ss_pred             cchHHHHHHHHHHHHHhcCchhHHHHHHHccCCccHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEEC
Q 039045          106 RAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIG  185 (295)
Q Consensus       106 ~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG  185 (295)
                      .+...+||+|..+..++++++||++++.||++||+|..+++.++..++.++...+|++||+++.||++++|+|+++++||
T Consensus       150 ~a~~~rDPA~~~~~~~~l~~~Gf~Al~~yRiah~l~~~~~~~la~~l~~~~~~~~GidI~p~A~IG~Gv~IdHg~GVVIG  229 (355)
T PLN02739        150 QAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVVIG  229 (355)
T ss_pred             HHHHccCccccCeeeeeeeCccHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhCcccCCCccccCceEEecCCceEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       186 ~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ++++||+||+|+++|+||+++...++++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||+++
T Consensus       230 ~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~  309 (355)
T PLN02739        230 ETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIG  309 (355)
T ss_pred             CCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCCEEec
Confidence            99999999999999999998887778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccccccc
Q 039045          266 GKEKTSSNEECPGESMDHTS  285 (295)
Q Consensus       266 ~~~~~~~~~~~p~~~~~~~~  285 (295)
                      +..     ...|++.||+..
T Consensus       310 ~~~-----~~~p~~~m~~Da  324 (355)
T PLN02739        310 FVD-----EQDPSLTMEYDA  324 (355)
T ss_pred             cCC-----ccchhhhhhhhh
Confidence            875     568999999874

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=100.00  E-value=1.3e-54  Score=393.30  Aligned_cols=260  Identities=54%  Similarity=0.835  Sum_probs=248.9

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHH
Q 039045           23 GDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAV  102 (295)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  102 (295)
                      ++..+++|++||+||+..+++||+|++|++.+||+|+.|+.+|+++|+++|.+..+.+..+.+++.+++.++|++.+.+.
T Consensus         3 ~~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~~l~~~~~~~~L~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~i~   82 (273)
T PRK11132          3 CEELEIVWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAA   82 (273)
T ss_pred             cccccHHHHHHHHHHHHHHhcCchhHHHHHHhccCCccHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence            34556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCe
Q 039045          103 ADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGV  182 (295)
Q Consensus       103 ~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v  182 (295)
                      +|+.+...+||++.++..++++++||++++.||+++|+|..+++.++.+++......++++||+++.||++++|+|++++
T Consensus        83 ~Di~~~~~~dpa~~~~~~pll~~~gf~a~~~yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~gi  162 (273)
T PRK11132         83 CDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHATGI  162 (273)
T ss_pred             HHHHHHHhcCccccceeEEEEECCChHHHHHHHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCCCe
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             EECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcE
Q 039045          183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR  262 (295)
Q Consensus       183 ~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~  262 (295)
                      +||++|+||+||.|+++++||+++...+.++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||
T Consensus       163 vIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~PAr  242 (273)
T PRK11132        163 VIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPAR  242 (273)
T ss_pred             EECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCcE
Confidence            99999999999999999999998877777899999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCccccccccc
Q 039045          263 LVGGKEKTSSNEECPGESMDHTSFI  287 (295)
Q Consensus       263 ~i~~~~~~~~~~~~p~~~~~~~~~~  287 (295)
                      ++++..     ..+|++.|||++..
T Consensus       243 vi~~~~-----~~~p~~~m~~~~~~  262 (273)
T PRK11132        243 IVGKPE-----SDKPSMDMDQHFNG  262 (273)
T ss_pred             EeCccc-----ccCchhhhhhhccc
Confidence            998875     56899999999743

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-44  Score=305.85  Aligned_cols=169  Identities=60%  Similarity=0.961  Sum_probs=165.7

Q ss_pred             HHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCC
Q 039045          100 AAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHA  179 (295)
Q Consensus       100 ~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~  179 (295)
                      .+.+|+.+.+.+||++..++..+++|+||++++.||++|++|...++.++.+++.+.+..++++|||+|+||++++|+|+
T Consensus         6 ~~~~di~a~~~~dPa~~~~~~~~l~y~g~ha~~~~R~ah~l~~~~~~~~A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg   85 (194)
T COG1045           6 SAREDIRAVRERDPAARSYLEVLLYYPGFHALWAHRLAHWLWNRGRKLLARLLSSLSRFLFGIEIHPGAKIGRGLFIDHG   85 (194)
T ss_pred             HHHHHHHHHhhcCccccchhHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcceeeCCCCeECCceEEcCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEcc
Q 039045          180 TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGN  259 (295)
Q Consensus       180 ~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~  259 (295)
                      ++++||++++|||||+|.++||||++++..++|||+||+||.||+||+|+++++||+|+.|||||||++|||++++++|+
T Consensus        86 ~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGv  165 (194)
T COG1045          86 TGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGV  165 (194)
T ss_pred             ceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEecCCC
Q 039045          260 PARLVGGKE  268 (295)
Q Consensus       260 PA~~i~~~~  268 (295)
                      |||++++..
T Consensus       166 PArii~~~~  174 (194)
T COG1045         166 PARVIGRPG  174 (194)
T ss_pred             cceEeccCC
Confidence            999999765

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.97  E-value=1.2e-30  Score=221.39  Aligned_cols=161  Identities=58%  Similarity=0.924  Sum_probs=150.4

Q ss_pred             HHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcC
Q 039045          102 VADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG  181 (295)
Q Consensus       102 ~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~  181 (295)
                      +.|+.++..+||++..+...++..++|+++..||++++++......++..+...+...++++|++++.||++++|+|+.+
T Consensus         2 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~yR~~~~~~~~~~~~l~~~~~~~~~~~~~~~I~~~~~Ig~~~~i~~~~g   81 (162)
T TIGR01172         2 REDIRAVRERDPAARSYLEVLLYYPGFHALWAYRFAHYLWKRGFKFLARLLSNFIRVLTGVDIHPGARIGRGVFIDHGTG   81 (162)
T ss_pred             HHHHHHHHhCCcccCCeEEEEEECchHHHHHHHHHHHHHHHccHHHHHHHHHHHHheeeCeEeCCCCEECCCeEECCCCe
Confidence            57899999999999999999999999999999999999998888888877777788888999999999999999999888


Q ss_pred             eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045          182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA  261 (295)
Q Consensus       182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA  261 (295)
                      ++||++++||+||+|+++++|++.....+.++++||++|+||++|+|.++++||++|+||++|+|.+|||++++++|+||
T Consensus        82 ~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~Pa  161 (162)
T TIGR01172        82 VVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPA  161 (162)
T ss_pred             EEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEeecC
Confidence            99999999999999999999998755555567999999999999999999999999999999999999999999999999


Q ss_pred             E
Q 039045          262 R  262 (295)
Q Consensus       262 ~  262 (295)
                      |
T Consensus       162 r  162 (162)
T TIGR01172       162 R  162 (162)
T ss_pred             C
Confidence            6

Cysteine biosynthesis

>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria []

Probab=99.88  E-value=1.5e-22  Score=159.50  Aligned_cols=105  Identities=53%  Similarity=0.764  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 039045           29 VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAA  108 (295)
Q Consensus        29 ~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~  108 (295)
                      ||++||+||+..+++||.|+++++..||+|++|+++|+++|+++|.+..+....+.+++.+++..+|++.+.+..|+.++
T Consensus         1 ~W~~lr~EA~~~~~~eP~La~~l~~~iL~h~s~~~ALa~~La~kL~~~~~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av   80 (105)
T PF06426_consen    1 LWQQLRAEAEEAAASEPLLASFLHATILSHDSFEDALAFRLANKLADPTLSADQLRDLFRDALEADPEIVEAARADLQAV   80 (105)
T ss_dssp             HHHHHHHHHHHHHHH-GGGHHHHHHHTTTSSSHHHHHHHHHHHHH-BTTS-HHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchHHHHHHHHhhcccCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccccccchhhcccchhhHHHH
Q 039045          109 RVRDPACVSFSHCLLNYKGFLACQA  133 (295)
Q Consensus       109 ~~~dpa~~~~~~~~~~~~gf~al~~  133 (295)
                      +.|||+|..+..++++||||+++|.
T Consensus        81 ~~RDPA~~~~~~~lL~~kGF~AlQa  105 (105)
T PF06426_consen   81 YERDPACPSYLEPLLFFKGFHALQA  105 (105)
T ss_dssp             HHHSTT--STHHHHHH-HHHHHHHH
T ss_pred             HhCCccccchhHHHHHCccHHHhcC
Confidence            9999999999999999999999873

; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....

>PRK10191 putative acyl transferase; Provisional

Probab=99.87  E-value=1.1e-21  Score=163.31  Aligned_cols=108  Identities=42%  Similarity=0.670  Sum_probs=98.5

Q ss_pred             cccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045          156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      ....+|++|++++.||+++.|+|+.+++|++++.||+||.|+++++||..+... ...++||++|+||++++|.++++||
T Consensus        36 ~~~~~g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~-~~~~~IGd~~~Ig~~~~I~~~v~IG  114 (146)
T PRK10191         36 TECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADN-MACPHIGNGVELGANVIILGDITIG  114 (146)
T ss_pred             HHHHhCcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCC-CCCCEECCCcEEcCCCEEeCCCEEC
Confidence            345789999999999999999999999999999999999999999998653322 1357999999999999999999999


Q ss_pred             CCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          236 EGAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      ++|+||+|++|.+|+|++++++|+|||+.
T Consensus       115 ~~~~Igags~V~~dv~~~~~v~G~pA~~~  143 (146)
T PRK10191        115 NNVTVGAGSVVLDSVPDNALVVGEKARVK  143 (146)
T ss_pred             CCCEECCCCEECCccCCCcEEEccCcEEE
Confidence            99999999999999999999999999875

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.86  E-value=1e-20  Score=165.76  Aligned_cols=111  Identities=32%  Similarity=0.446  Sum_probs=85.0

Q ss_pred             cccceeeEeCCCceecCceEEcCCcCeEE--CCCcEEcCCcEEccCCEECCCCC----------CCCCCCCEECCCCEEC
Q 039045          156 ISDVFAVDIHPAAKIGKGILFDHATGVVI--GETAVIGNNVSILHHVTLGGTGK----------ASGDRHPKIGDGVLIG  223 (295)
Q Consensus       156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~I--G~~~~IG~~v~I~~gv~Igg~~~----------~~~~~~~~IG~~v~IG  223 (295)
                      +..++.++.|.++.||++++|++  +++|  +.++.||++|.|+++|+|...+.          ....++++||++||||
T Consensus        64 I~~~~~~~~g~ni~IG~~v~In~--~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG  141 (203)
T PRK09527         64 VEPPVYFSYGSNIHIGRNFYANF--NLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIG  141 (203)
T ss_pred             EcCCEEEeeCCCcEEcCCcEECC--CcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEEC
Confidence            44445556667777777777766  4444  33466677777777776653221          1112468999999999


Q ss_pred             CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      ++++|.++++||++|+||+||+|++|+|++++++|+|||++++..
T Consensus       142 ~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~  186 (203)
T PRK09527        142 SHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN  186 (203)
T ss_pred             CCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence            999999999999999999999999999999999999999999875

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=2.6e-21  Score=165.30  Aligned_cols=146  Identities=29%  Similarity=0.332  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 039045           29 VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAA  108 (295)
Q Consensus        29 ~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~  108 (295)
                      ++..+++|+++.+++||+++++++ .+|+|++|++.++||++|+|++....                        .+   
T Consensus         3 ~~~~~~~di~a~~~~dPa~~~~~~-~~l~y~g~ha~~~~R~ah~l~~~~~~------------------------~~---   54 (194)
T COG1045           3 MLGSAREDIRAVRERDPAARSYLE-VLLYYPGFHALWAHRLAHWLWNRGRK------------------------LL---   54 (194)
T ss_pred             hHHHHHHHHHHHhhcCccccchhH-HHHhhhHHHHHHHHHHHHHHHHhhhH------------------------HH---
Confidence            455789999999999999999776 59999999999999999999543211                        11   


Q ss_pred             hccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHH-HHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC
Q 039045          109 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLA-LALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET  187 (295)
Q Consensus       109 ~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~-~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~  187 (295)
                                           +.....+.+.++.-..++.+ ..-+.++++..|++||++|.||++|+|+|  +|+||.+
T Consensus        55 ---------------------A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~--gVTLGgt  111 (194)
T COG1045          55 ---------------------ARLLSSLSRFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYH--GVTLGGT  111 (194)
T ss_pred             ---------------------HHHHHHHHHhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEc--ceEecCC
Confidence                                 11111222233333333333 33355678889999999999999999999  9999987


Q ss_pred             --------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCE
Q 039045          188 --------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVK  233 (295)
Q Consensus       188 --------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~  233 (295)
                              .+||+||.|++|++|.|        +++||+|+.||+||+|+.+|-
T Consensus       112 g~~~g~RhPtIg~~V~IGagAkILG--------~I~IGd~akIGA~sVVlkdVP  157 (194)
T COG1045         112 GKESGKRHPTIGNGVYIGAGAKILG--------NIEIGDNAKIGAGSVVLKDVP  157 (194)
T ss_pred             CCcCCCCCCccCCCeEECCCCEEEc--------ceEECCCCEECCCceEccCCC
Confidence                    48999999999999886        799999999999999999864

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.86  E-value=1.3e-20  Score=162.77  Aligned_cols=109  Identities=29%  Similarity=0.411  Sum_probs=83.0

Q ss_pred             cccceeeEeCCCceecCceEEcCCcCeEECCCc--EEcCCcEEccCCEECCCCC----------CCCCCCCEECCCCEEC
Q 039045          156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETA--VIGNNVSILHHVTLGGTGK----------ASGDRHPKIGDGVLIG  223 (295)
Q Consensus       156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~--~IG~~v~I~~gv~Igg~~~----------~~~~~~~~IG~~v~IG  223 (295)
                      +..++.+++|.++.||++++|.+  +++|++.+  +||++|.|+++|+|.....          .....+++||++||||
T Consensus        62 i~~~~~~~~g~~i~iG~~~~in~--~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG  139 (183)
T PRK10092         62 IEPTFRCDYGYNIFLGNNFYANF--DCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIG  139 (183)
T ss_pred             EeCCEEEeecCCcEEcCCcEECC--ceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEEC
Confidence            44445566666777777766665  55555554  5666666666666643211          0112468999999999


Q ss_pred             CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++|+|+++++||++|+||+||+|.+|+|++++++|+|||++++
T Consensus       140 ~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~  182 (183)
T PRK10092        140 GRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  182 (183)
T ss_pred             CCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence            9999999999999999999999999999999999999999875

>PLN02739 serine acetyltransferase

Probab=99.85  E-value=6.1e-21  Score=176.95  Aligned_cols=180  Identities=22%  Similarity=0.244  Sum_probs=136.9

Q ss_pred             CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccc--cchHHHHH
Q 039045            8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSST--LLSTLLYD   85 (295)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~--~~~~~l~~   85 (295)
                      ..+++..+++.+.+++...+.||+.+++|++++.++||++.++++ .+|.+|+|++.+.||+||+|++..  .++..|+ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~a~~~rDPA~~~~~~-~~l~~~Gf~Al~~yRiah~l~~~~~~~la~~l~-  197 (355)
T PLN02739        120 PTLLATQLMDIFCNVMVHDRGIQSSIRLDVQAFKDRDPACLSYSS-AILHLKGYLALQAYRVAHKLWKQGRKLLALALQ-  197 (355)
T ss_pred             CcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHccCccccCeee-eeeeCccHHHHHHHHHHHHHHHCCChHHHHHHH-
Confidence            456677788889999999999999999999999999999999876 589999999999999999995432  1111111 


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHH-HHHhhccccceeeEe
Q 039045           86 LFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLA-LALQSRISDVFAVDI  164 (295)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~-~~~~~~~~~~~~v~I  164 (295)
                                                                       +..+.++.-...+.+ ..-+..+.+..+++|
T Consensus       198 -------------------------------------------------~~~~~~~GidI~p~A~IG~Gv~IdHg~GVVI  228 (355)
T PLN02739        198 -------------------------------------------------SRVSEVFGIDIHPAARIGKGILLDHGTGVVI  228 (355)
T ss_pred             -------------------------------------------------HHHHHHhCcccCCCccccCceEEecCCceEE
Confidence                                                             111112222222111 122445666779999


Q ss_pred             CCCceecCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          165 HPAAKIGKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       165 g~~a~IG~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      |++++||++|.|.|  +++||.        .++||++|.|+.|++|.+        +++||++|.||+|++|..+  |.+
T Consensus       229 G~~avIGdnv~I~~--gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG--------~V~IGd~aiIGAGSVV~kD--VP~  296 (355)
T PLN02739        229 GETAVIGDRVSILH--GVTLGGTGKETGDRHPKIGDGALLGACVTILG--------NISIGAGAMVAAGSLVLKD--VPS  296 (355)
T ss_pred             CCCCEECCCCEEcC--CceeCCcCCcCCCCCcEECCCCEEcCCCEEeC--------CeEECCCCEECCCCEECCC--CCC
Confidence            99999999999999  899985        379999999999999975        7999999999999999987  555


Q ss_pred             CC-EECCCCEEcCCC
Q 039045          237 GA-KVGAGSVVLIDV  250 (295)
Q Consensus       237 ~~-~IgagsvV~~~V  250 (295)
                      ++ ++|.-+.+.+..
T Consensus       297 ~stvvG~PAriI~~~  311 (355)
T PLN02739        297 HSMVAGNPAKLIGFV  311 (355)
T ss_pred             CcEEEecCCEEeccC
Confidence            55 455556655543

>PLN02694 serine O-acetyltransferase

Probab=99.84  E-value=4.3e-21  Score=174.78  Aligned_cols=170  Identities=22%  Similarity=0.234  Sum_probs=128.2

Q ss_pred             CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 039045            8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLF   87 (295)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~   87 (295)
                      ..+++..+++.+.+++...+.+++.+++|++++.++||++.++++ .+|+||+|++.++||+||+|+....         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~~rdpa~~~~~~-~~l~~~Gf~Al~~yR~ah~l~~~~~---------  144 (294)
T PLN02694         75 STLLSTLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSH-CLLNYKGFLACQAHRVAHKLWTQSR---------  144 (294)
T ss_pred             CcCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCccccchhh-hhhcCHhHHHHHHHHHHHHHHHCCC---------
Confidence            356777788899999999999999999999999999999999887 5999999999999999999964321         


Q ss_pred             HHhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeC
Q 039045           88 LDTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIH  165 (295)
Q Consensus        88 ~~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig  165 (295)
                             +.+...+..-+...+.  -.|.+                   +              ..-+.++.+..+++||
T Consensus       145 -------~~la~~~~~~~~~~~gvdI~p~A-------------------~--------------IG~gv~Idh~tGVVIG  184 (294)
T PLN02694        145 -------RPLALALHSRISDVFAVDIHPAA-------------------K--------------IGKGILFDHATGVVIG  184 (294)
T ss_pred             -------hhHHHHHHHhcccceeEEeCCcc-------------------e--------------ecCCEEEeCCCCeEEC
Confidence                   1111111111111111  11111                   1              1113345556689999


Q ss_pred             CCceecCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045          166 PAAKIGKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG  237 (295)
Q Consensus       166 ~~a~IG~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~  237 (295)
                      ++++||++|.|.+  ++++|.        +++||++|.|+.+++|.+        +++||++|.||+|++|.++  |.++
T Consensus       185 e~a~IGdnv~I~~--~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilg--------gi~IGd~a~IGAgSVV~kd--VP~~  252 (294)
T PLN02694        185 ETAVIGNNVSILH--HVTLGGTGKACGDRHPKIGDGVLIGAGATILG--------NVKIGEGAKIGAGSVVLID--VPPR  252 (294)
T ss_pred             CCcEECCCCEEee--cceeCCcccccCCCccEECCCeEECCeeEECC--------CCEECCCCEECCCCEECCc--CCCC
Confidence            9999999999998  899985        479999999999999964        6899999999999999886  5555


Q ss_pred             CE
Q 039045          238 AK  239 (295)
Q Consensus       238 ~~  239 (295)
                      ++
T Consensus       253 ~~  254 (294)
T PLN02694        253 TT  254 (294)
T ss_pred             cE
Confidence            53

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.80  E-value=8.2e-19  Score=149.69  Aligned_cols=104  Identities=35%  Similarity=0.469  Sum_probs=72.8

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC----CCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT----GKASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~----~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ++.||+++.|+.++.|....+++||+++.|+++|.|.++..-...    .......+++||++|+||++|+|+++++||+
T Consensus        62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~  141 (169)
T cd03357          62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD  141 (169)
T ss_pred             cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence            344555555555555543345555555555555555432210000    0001124689999999999999999999999


Q ss_pred             CCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          237 GAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      +|+||+||+|++|+|++++++|+|||++
T Consensus       142 ~~~VgagavV~~~vp~~~vv~G~PAkvi  169 (169)
T cd03357         142 NSVIGAGSVVTKDIPANVVAAGNPARVI  169 (169)
T ss_pred             CCEECCCCEEccccCCCcEEEccccEEC
Confidence            9999999999999999999999999985

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10502 putative acyl transferase; Provisional

Probab=99.80  E-value=8.9e-19  Score=151.31  Aligned_cols=57  Identities=35%  Similarity=0.490  Sum_probs=54.1

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .+++||++|+||++|+|+++++||++|+||++|+|++++|++++++|+|||++++..
T Consensus       123 ~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r~  179 (182)
T PRK10502        123 APIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPRV  179 (182)
T ss_pred             CCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEecccc
Confidence            457999999999999999999999999999999999999999999999999998764

>PLN02357 serine acetyltransferase

Probab=99.79  E-value=5.7e-19  Score=164.99  Aligned_cols=179  Identities=22%  Similarity=0.282  Sum_probs=132.5

Q ss_pred             CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 039045            8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLF   87 (295)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~   87 (295)
                      ..+++..+.+.+.++....+.+++.++.|++++.++||+..+|++. +|.+++|++.++||+||+|++....        
T Consensus       141 ~~~~~~~~~el~~~aL~~DpdI~e~IraDLaAI~eRDPAciSFL~~-~l~~kGf~al~~~Riah~l~~~~~~--------  211 (360)
T PLN02357        141 LNLPSNTLFDLFIGVLEESPEIIESVKQDLRAVKERDPACISYVHC-FLNFKGFLACQAHRIAHKLWTQGRK--------  211 (360)
T ss_pred             ccCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHccCcchhhhhHH-HhhCHHHHHHHHHHHHHHHHHcCCH--------
Confidence            4566777888888888888899999999999999999999999885 8999999999999999999644211        


Q ss_pred             HHhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeC
Q 039045           88 LDTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIH  165 (295)
Q Consensus        88 ~~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig  165 (295)
                              .+...+.......+.  -.|.+                   +              ..-+.++....+++||
T Consensus       212 --------~la~~i~~~~~~~f~vdI~p~a-------------------~--------------IG~Gv~Idh~~giVIG  250 (360)
T PLN02357        212 --------ILALLIQNRVSEAFAVDIHPGA-------------------K--------------IGQGILLDHATGVVIG  250 (360)
T ss_pred             --------HHHHHHHHHHHHHhceeeCCCC-------------------E--------------ECCCeEECCCCceEEC
Confidence                    011111111111111  11211                   0              1113345555689999


Q ss_pred             CCceecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045          166 PAAKIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG  237 (295)
Q Consensus       166 ~~a~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~  237 (295)
                      ++++||++|.|.+  +++||..        ++||++|.|+.|++|.+        +++||+++.||+|++|.++  |.++
T Consensus       251 e~avIGdnV~I~~--gVtIGg~g~~~g~~~piIGd~V~IGagA~Ilg--------gV~IGdga~IGAgSVV~~d--VP~~  318 (360)
T PLN02357        251 ETAVVGNNVSILH--NVTLGGTGKQSGDRHPKIGDGVLIGAGTCILG--------NITIGEGAKIGAGSVVLKD--VPPR  318 (360)
T ss_pred             CCCEECCCCEEeC--CceecCccccCCccCceeCCCeEECCceEEEC--------CeEECCCCEECCCCEECcc--cCCC
Confidence            9999999999999  8999874        89999999999999864        6899999999999999987  3444


Q ss_pred             C-EECCCCEEcC
Q 039045          238 A-KVGAGSVVLI  248 (295)
Q Consensus       238 ~-~IgagsvV~~  248 (295)
                      + ++|.-+.+..
T Consensus       319 ~~v~G~PArvv~  330 (360)
T PLN02357        319 TTAVGNPARLIG  330 (360)
T ss_pred             cEEECCCeEEEc
Confidence            4 4566666654

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.78  E-value=3.1e-18  Score=135.33  Aligned_cols=106  Identities=33%  Similarity=0.374  Sum_probs=86.5

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEEC-CCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG-GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG  237 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Ig-g~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~  237 (295)
                      ++++.||+++.|++++.|.....++||++|.|+++|.|..+.+-. .........+++||++|+||+++.|.++++||++
T Consensus         1 ~~~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~   80 (107)
T cd05825           1 PWNLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG   80 (107)
T ss_pred             CceEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence            357889999999999999866678888888888888886432110 0000011247899999999999999999999999


Q ss_pred             CEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          238 AKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       238 ~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      |+|+++|+|.+++|++++++|+|||++
T Consensus        81 ~~i~~gs~v~~~~~~~~~~~G~Pa~~~  107 (107)
T cd05825          81 AVVGARSVVVRDLPAWTVYAGNPAVPV  107 (107)
T ss_pred             CEECCCCEEeCcCCCCCEEECCccEeC
Confidence            999999999999999999999999974

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.77  E-value=1.8e-18  Score=149.43  Aligned_cols=109  Identities=39%  Similarity=0.601  Sum_probs=79.9

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCC-----CCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK-----ASGDRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~-----~~~~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      .+.+|..+.++.++.+....+++||.++.++.+|.|.++.+.+....     ......++||++||||+||+|++||+||
T Consensus        67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG  146 (190)
T COG0110          67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG  146 (190)
T ss_pred             ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence            44555555555555544444556666666666666655433322111     1113469999999999999999999999


Q ss_pred             CCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045          236 EGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      ++++||+||+|++|+|+++++.|+||+++++...
T Consensus       147 ~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~~  180 (190)
T COG0110         147 EGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRDV  180 (190)
T ss_pred             CCcEEeeCCEEeCccCCCeEEeCCcceEEEecch
Confidence            9999999999999999999999999999987653

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.76  E-value=1.6e-18  Score=157.73  Aligned_cols=190  Identities=15%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             CCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhc
Q 039045           12 ARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTF   91 (295)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~   91 (295)
                      +..+++.+.++....+.+++.+++|+.++.++||++.++++. +|.+++|.+.+.||++++|+......           
T Consensus        60 ~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~p-ll~~~gf~a~~~yR~a~~l~~~~~~~-----------  127 (273)
T PRK11132         60 AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTP-LLYLKGFHALQAYRIGHWLWNQGRRA-----------  127 (273)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEE-EEECCChHHHHHHHHHHHHHHCCCch-----------
Confidence            334555556666777889999999999999999999998885 88999999999999999995432110           


Q ss_pred             cCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCC-hhHHHHHhhccccceeeEeCCCcee
Q 039045           92 SSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSR-RPLALALQSRISDVFAVDIHPAAKI  170 (295)
Q Consensus        92 ~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~-~~~~~~~~~~~~~~~~v~Ig~~a~I  170 (295)
                           +...+...                                ....+.-.. +.....-+..+.+..+++||++++|
T Consensus       128 -----la~~~~~~--------------------------------~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~I  170 (273)
T PRK11132        128 -----LAIYLQNQ--------------------------------ISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVI  170 (273)
T ss_pred             -----hhhhhhhc--------------------------------ceeeeeeEecCcceECCCeEEcCCCCeEECCCCEE
Confidence                 00000000                                000000000 0001111344556678999999999


Q ss_pred             cCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC-EEC
Q 039045          171 GKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA-KVG  241 (295)
Q Consensus       171 G~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~-~Ig  241 (295)
                      |++|.|.+  +++||.        .++||++|.||.|++|.+        +++||+||.||+|++|.++  |.+++ +.|
T Consensus       171 Gdnv~I~~--~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg--------gv~IG~~a~IGAgSvV~~d--Vp~~~~v~G  238 (273)
T PRK11132        171 ENDVSILQ--SVTLGGTGKTSGDRHPKIREGVMIGAGAKILG--------NIEVGRGAKIGAGSVVLQP--VPPHTTAAG  238 (273)
T ss_pred             CCCCEEcC--CcEEecCcccCCCcCCEECCCcEEcCCCEEcC--------CCEECCCCEECCCCEECcc--cCCCcEEEe
Confidence            99999998  899996        369999999999999985        7999999999999999986  56666 344


Q ss_pred             CCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          242 AGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       242 agsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .-+.+.+....     -.|+.-+...
T Consensus       239 ~PArvi~~~~~-----~~p~~~m~~~  259 (273)
T PRK11132        239 VPARIVGKPES-----DKPSMDMDQH  259 (273)
T ss_pred             cCcEEeCcccc-----cCchhhhhhh
Confidence            44444332211     2466655543

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.74  E-value=2.8e-17  Score=143.11  Aligned_cols=109  Identities=27%  Similarity=0.400  Sum_probs=81.9

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCE--EC------C-CC----CCCCCCCCEECCCCEECCCCE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVT--LG------G-TG----KASGDRHPKIGDGVLIGAGAT  227 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~--Ig------g-~~----~~~~~~~~~IG~~v~IGa~a~  227 (295)
                      .+.||+++.|++++.|.+..+++||++|.||++|.|.++.+  +.      + ..    .......++||++|+||++++
T Consensus        65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~  144 (192)
T PRK09677         65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT  144 (192)
T ss_pred             eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence            45667777777777766555666666666666666654322  00      0 00    001124689999999999999


Q ss_pred             ECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045          228 ILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       228 I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      |.++++||++|+||++|+|.+++|++++++|+||+++++.+.
T Consensus       145 i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~~~  186 (192)
T PRK09677        145 ILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYNH  186 (192)
T ss_pred             EcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEeccCc
Confidence            999999999999999999999999999999999999998753

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.73  E-value=6.8e-17  Score=126.13  Aligned_cols=100  Identities=63%  Similarity=1.069  Sum_probs=92.5

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      |+.|+++++||++++|+++.+++||+++.||++|.|+++++|+........+++.||++|+|++++.+.++++||++|+|
T Consensus         2 ~~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i   81 (101)
T cd03354           2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKI   81 (101)
T ss_pred             ceEeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEE
Confidence            68899999999999999877899999999999999999999987665333457899999999999999999999999999


Q ss_pred             CCCCEEcCCCCCCcEEEccC
Q 039045          241 GAGSVVLIDVPARATAVGNP  260 (295)
Q Consensus       241 gagsvV~~~Vp~~~~v~G~P  260 (295)
                      +++++|.+++|++.+++|+|
T Consensus        82 ~~~~~i~~~~~~~~~~~G~P  101 (101)
T cd03354          82 GANAVVTKDVPANSTVVGVP  101 (101)
T ss_pred             CCCCEECcccCCCCEEEeCC
Confidence            99999999999999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.72  E-value=3.2e-17  Score=146.61  Aligned_cols=59  Identities=41%  Similarity=0.663  Sum_probs=55.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKT  270 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~~  270 (295)
                      +.++||++|+||++++|..+++||++++|+++++|.+++|++++++|+|||++++.++.
T Consensus       159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~~~~  217 (231)
T TIGR03532       159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVDEK  217 (231)
T ss_pred             CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccCChh
Confidence            35899999999999999999999999999999999999999999999999999987643

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.71  E-value=8.4e-18  Score=145.73  Aligned_cols=174  Identities=21%  Similarity=0.240  Sum_probs=127.7

Q ss_pred             ccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhccc--ccchHHHHHHHHHhcc
Q 039045           15 LTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSS--TLLSTLLYDLFLDTFS   92 (295)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~--~~~~~~l~~~~~~~~~   92 (295)
                      +-..+-..+..++.|-+.++.|..+...+||++-+|.. .+|.+++|.|.++||+||+|+..  +.++--+...      
T Consensus        70 l~~lf~~~~~~d~~i~~s~~~dl~a~~~rdPac~dy~s-~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~r------  142 (269)
T KOG4750|consen   70 LGDLFLSVLRADPLIRESVFDDLDAFKIRDPACIDYGS-NILHGKGFLANQAYRIAHNLWTQDRKILALGLQVR------  142 (269)
T ss_pred             hhhHhHHHhccCHHHHHHHHHhhhhhccCCcchhhhHH-HhHhcccHhhhhHHHhhhhheecCCeeEEEeecce------
Confidence            33344444556677999999999999999999999776 69999999999999999999764  2222211111      


Q ss_pred             CCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecC
Q 039045           93 SDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGK  172 (295)
Q Consensus        93 ~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~  172 (295)
                                                                 ++..+--..++.....-+..+++..|++||++++||+
T Consensus       143 -------------------------------------------is~~~gvdihpaa~ig~gilldhatgvvigeTAvvg~  179 (269)
T KOG4750|consen  143 -------------------------------------------ISPNFGVDIHPAAKIGKGILLDHATGVVIGETAVVGD  179 (269)
T ss_pred             -------------------------------------------ecccccccccchhhcccceeeccccceeecceeEecc
Confidence                                                       1111111111222222345577889999999999999


Q ss_pred             ceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          173 GILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS  244 (295)
Q Consensus       173 ~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags  244 (295)
                      ++.|.|  ++++|.+        ..|||||.||.|++|.+        +++||+|+.||+|++|+.+| -.....+|.-+
T Consensus       180 ~vSilH--~Vtlggtgk~~gdrhP~Igd~vliGaGvtILg--------nV~IGegavIaAGsvV~kDV-P~~~~AvGnPA  248 (269)
T KOG4750|consen  180 NVSILH--PVTLGGTGKGSGDRHPKIGDNVLIGAGVTILG--------NVTIGEGAVIAAGSVVLKDV-PPNTLAVGNPA  248 (269)
T ss_pred             ceeeec--ceeeccccccccccCCcccCCeEEccccEEeC--------CeeECCCcEEeccceEEecc-CCCceecCCch
Confidence            999999  9999986        48999999999999986        79999999999999999885 22333555555


Q ss_pred             EEcCC
Q 039045          245 VVLID  249 (295)
Q Consensus       245 vV~~~  249 (295)
                      .+..-
T Consensus       249 klIg~  253 (269)
T KOG4750|consen  249 KLIGK  253 (269)
T ss_pred             hhccc
Confidence            55443

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.70  E-value=1.6e-16  Score=126.90  Aligned_cols=103  Identities=41%  Similarity=0.496  Sum_probs=82.4

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC-------CCCCCEECCCCEECCCCEECCCCE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS-------GDRHPKIGDGVLIGAGATILGNVK  233 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~-------~~~~~~IG~~v~IGa~a~I~~~v~  233 (295)
                      ++.|++++.||+++.|++  +++|+++++||++|.|++++++.+.....       ...+++||++|+||++++|..+++
T Consensus        10 ~~~i~~~~~Ig~~~~I~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~   87 (119)
T cd03358          10 NVFIENDVKIGDNVKIQS--NVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVT   87 (119)
T ss_pred             CcEECCCcEECCCcEECC--CcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcE
Confidence            345666677777777766  66777777777777777777775421111       125689999999999999999999


Q ss_pred             ECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          234 IGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       234 IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ||+++.|+++++|.+++|+++++.|+|||+++
T Consensus        88 ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~~  119 (119)
T cd03358          88 IGEYALVGAGAVVTKDVPPYALVVGNPARIIG  119 (119)
T ss_pred             ECCCCEEccCCEEeCcCCCCeEEecCcceecC
Confidence            99999999999999999999999999999864

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.70  E-value=2.3e-16  Score=131.48  Aligned_cols=106  Identities=30%  Similarity=0.344  Sum_probs=84.5

Q ss_pred             eEeCCCceecC-ceEEcCCcCeEECCCcEEcCCcEEccC-CEECC-----------C--------CCCCCCCCCEECCCC
Q 039045          162 VDIHPAAKIGK-GILFDHATGVVIGETAVIGNNVSILHH-VTLGG-----------T--------GKASGDRHPKIGDGV  220 (295)
Q Consensus       162 v~Ig~~a~IG~-~v~I~~~~~v~IG~~~~IG~~v~I~~g-v~Igg-----------~--------~~~~~~~~~~IG~~v  220 (295)
                      +.||.++.|+. .+.+.. ..++||++|.|+.+|.|..+ .+-..           .        .......+++||++|
T Consensus         2 ~~iG~~s~i~~~~~~~~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~   80 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGG-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV   80 (145)
T ss_pred             EEEeCceeeCCCCceEeC-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence            46888888888 555554 47888888888888888766 22110           0        001123579999999


Q ss_pred             EECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       221 ~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||++++|+++++||++|+||++|+|++++|++++++|+||+++++..
T Consensus        81 ~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~  128 (145)
T cd03349          81 WIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRF  128 (145)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhC
Confidence            999999999999999999999999999999999999999999998753

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.68  E-value=4.5e-16  Score=135.88  Aligned_cols=104  Identities=22%  Similarity=0.258  Sum_probs=76.4

Q ss_pred             eEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------cCCEECCCCCCCCCCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------HHVTLGGTGKASGDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      +.||+++.|+++++|... ..++||.++.||++|+|.          ++++|+.....   .+++||++|+||.+++|+.
T Consensus        29 V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i---~g~vIG~~v~IG~ga~V~~  105 (196)
T PRK13627         29 VIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL---HGCVIGRDALVGMNSVIMD  105 (196)
T ss_pred             eEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE---eeEEECCCCEECcCCccCC
Confidence            456666666666655431 124566666666666553          33333322211   3579999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCC
Q 039045          231 NVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKE  268 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~  268 (295)
                      +++||++++|++||+|.+++  |++++++|+|||+++...
T Consensus       106 g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~  145 (196)
T PRK13627        106 GAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVS  145 (196)
T ss_pred             CcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCC
Confidence            99999999999999999986  899999999999999865

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.67  E-value=2.4e-16  Score=142.99  Aligned_cols=106  Identities=23%  Similarity=0.316  Sum_probs=78.0

Q ss_pred             eeEeCCCceecCceEEcCCc----CeEECCCcEEcCCcE------EccCCEECCCCCCCCCCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVS------ILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~----~v~IG~~~~IG~~v~------I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      .+.||+++.|+++++|..++    .++||+++.|.+++.      |+++++|+......  .+++||++|+||.++.|.+
T Consensus        77 ~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~--g~v~Igd~a~Ig~~a~V~~  154 (255)
T PRK12461         77 RLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLA--GHVTVGDRAIISGNCLVHQ  154 (255)
T ss_pred             eeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccC--CceEECCCeEEeCCCEECC
Confidence            56788888888888776532    345555444333333      33333333222222  4899999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +++||++++|+++|+|++||||++++.|+||++.+-..
T Consensus       155 ~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~~~~n~  192 (255)
T PRK12461        155 FCRIGALAMMAGGSRISKDVPPYCMMAGHPTNVHGLNA  192 (255)
T ss_pred             CCEECCCcEECCCceEeccCCCCeEEecCcceEeccch
Confidence            99999999999999999999999999999999855443

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.67  E-value=8.4e-16  Score=126.94  Aligned_cols=99  Identities=27%  Similarity=0.410  Sum_probs=80.2

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ++.+..++.||++++|.+  +++|+.+++||++|.|+++++|++.......++++||++|+||++++|.++++||++++|
T Consensus        25 ~~~i~~~~~IG~~~~I~~--~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~I  102 (139)
T cd03350          25 PSYVNIGAYVDEGTMVDS--WATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVL  102 (139)
T ss_pred             CCEEccCCEECCCeEEcC--CCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence            344666667777777776  678888888888888888888876433223356899999999999999999999999999


Q ss_pred             CCCCEEc---------------CCCCCC-cEEEccCc
Q 039045          241 GAGSVVL---------------IDVPAR-ATAVGNPA  261 (295)
Q Consensus       241 gagsvV~---------------~~Vp~~-~~v~G~PA  261 (295)
                      +++++|.               +|+|++ .+++|+|.
T Consensus       103 g~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~~~g~~~  139 (139)
T cd03350         103 AAGVVLTQSTPIYDRETGEIYYGRVPPGSVVVAGSLP  139 (139)
T ss_pred             cCCCEEcCCeEecccCcccEEecccCCCCEEecccCC
Confidence            9999999               888888 77888874

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.66  E-value=2.8e-16  Score=143.17  Aligned_cols=107  Identities=30%  Similarity=0.367  Sum_probs=85.7

Q ss_pred             eeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      .+.||+++.|+++++|..++     .++||+++.|+.++.|++++.||.......    ..+++||++|+||.++.|.++
T Consensus        80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~  159 (262)
T PRK05289         80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF  159 (262)
T ss_pred             eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC
Confidence            57788888888888887642     367777777776666666665554422211    247999999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      ++||++++||++|+|++|+|+++++.|+||++.+..
T Consensus       160 v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~~~n  195 (262)
T PRK05289        160 VRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGLN  195 (262)
T ss_pred             CEECCCCEEeeecceeccCCCCeEEecccCeEeccc
Confidence            999999999999999999999999999999997633

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.66  E-value=3e-16  Score=132.82  Aligned_cols=99  Identities=36%  Similarity=0.581  Sum_probs=76.6

Q ss_pred             eEeCCCceecCceEEcC-CcCeEECCC----------------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDH-ATGVVIGET----------------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGA  224 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~-~~~v~IG~~----------------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa  224 (295)
                      +.|++++.|..++.|.. ...+.||++                +.||++|+|+|++.|.         .++||++|+||-
T Consensus        30 V~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH---------Gc~Ig~~~lIGm  100 (176)
T COG0663          30 VRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH---------GCTIGDNVLIGM  100 (176)
T ss_pred             EEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE---------EeEECCCcEEec
Confidence            44555555555544432 124555554                3566666677777664         489999999999


Q ss_pred             CCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      |++|+.+++||++|+||+||+|++.  +|++++++|.|||+++..++
T Consensus       101 gA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~  147 (176)
T COG0663         101 GATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD  147 (176)
T ss_pred             CceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence            9999999999999999999999985  89999999999999998763

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.66  E-value=5.6e-16  Score=131.71  Aligned_cols=123  Identities=20%  Similarity=0.293  Sum_probs=90.0

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccC----------CEECCCCCCC---CCCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHH----------VTLGGTGKAS---GDRHPKIGDGVLIGAGA  226 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~g----------v~Igg~~~~~---~~~~~~IG~~v~IGa~a  226 (295)
                      .+.||+++.|++++.|... ..++||++|.|+++|+|.+.          ++||......   ...+++||++|+||++|
T Consensus        17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a   96 (164)
T cd04646          17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS   96 (164)
T ss_pred             ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCC
Confidence            4567777777777777532 35777887777777777544          3355432111   11358999999999999


Q ss_pred             EECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCcccccccccccc
Q 039045          227 TILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEW  290 (295)
Q Consensus       227 ~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~~~~~~~  290 (295)
                      +|+++++||++|+||++|+|.++  +|+++++.|+|+...-.       ...|+...+|..|++-|
T Consensus        97 ~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~-------~~~~~~~~~~~~~~~~~  155 (164)
T cd04646          97 FVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ-------TDRPKPQTLQLDFLRKI  155 (164)
T ss_pred             EECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec-------CCCchhHHHHHHHHHHH
Confidence            99999999999999999999999  99999999999965532       24566666666565544

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.64  E-value=2.3e-15  Score=128.68  Aligned_cols=48  Identities=56%  Similarity=0.908  Sum_probs=46.7

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP  260 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~P  260 (295)
                      +++||++|+||++++|.++++||++|+||++++|.+++|++++++|+|
T Consensus       150 ~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~p  197 (197)
T cd03360         150 GVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP  197 (197)
T ss_pred             CcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PLN02296 carbonate dehydratase

Probab=99.63  E-value=3.1e-15  Score=136.38  Aligned_cols=104  Identities=25%  Similarity=0.412  Sum_probs=79.3

Q ss_pred             eEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------------cCCEECCCCCCCCCCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------------HHVTLGGTGKASGDRHPKIGDGVLIGA  224 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------------~gv~Igg~~~~~~~~~~~IG~~v~IGa  224 (295)
                      +.||+++.|+.++.|... .+++||++|.|+++|+|.                ++|+|+.+...   +.++||++|+||.
T Consensus        71 V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI---~g~~Igd~v~IG~  147 (269)
T PLN02296         71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL---HGCTVEDEAFVGM  147 (269)
T ss_pred             eEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee---cCCEECCCcEECC
Confidence            556666666666666532 245677777777666553                33333332222   3589999999999


Q ss_pred             CCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE  268 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +++|+.+++||++|+||+||+|.++  +|++++++|+||++++...
T Consensus       148 ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~  193 (269)
T PLN02296        148 GATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLT  193 (269)
T ss_pred             CcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCC
Confidence            9999999999999999999999999  8999999999999998765

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.63  E-value=2.2e-15  Score=136.18  Aligned_cols=80  Identities=31%  Similarity=0.447  Sum_probs=59.5

Q ss_pred             CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC------------
Q 039045          181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI------------  248 (295)
Q Consensus       181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~------------  248 (295)
                      +++||++++||+||.|..++.|+|........+++||++|+||++|+|.++++||++|+||+|++|.+            
T Consensus       141 ~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v  220 (269)
T TIGR00965       141 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEI  220 (269)
T ss_pred             CcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCce
Confidence            34555555555555555555554432222235689999999999999999999999999999999954            


Q ss_pred             ---CCCCCcEEE-c-cC
Q 039045          249 ---DVPARATAV-G-NP  260 (295)
Q Consensus       249 ---~Vp~~~~v~-G-~P  260 (295)
                         +||++++|+ | .|
T Consensus       221 ~~~~vp~~svv~~g~~p  237 (269)
T TIGR00965       221 HYGRVPAGSVVVSGNLP  237 (269)
T ss_pred             eeeecCCCcEEecCCee
Confidence               789999998 4 66

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.63  E-value=2.8e-15  Score=131.76  Aligned_cols=56  Identities=43%  Similarity=0.669  Sum_probs=53.7

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .+++||++|+||.+++|..+++||++++||+|++|.+++|++++++|+||+++++.
T Consensus       107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~  162 (204)
T TIGR03308       107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR  162 (204)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence            57899999999999999999999999999999999999999999999999998864

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.62  E-value=5.3e-15  Score=116.05  Aligned_cols=103  Identities=40%  Similarity=0.615  Sum_probs=83.7

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCC--EECCCCC---CCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHV--TLGGTGK---ASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv--~Igg~~~---~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      +.||+++.|++++.|....+++||++|.|+++|.|..+.  .+.....   .....+++||++|+|++++.+..++.||+
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~   81 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD   81 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence            568999999999988865578888888888888887642  1111110   11125689999999999999999999999


Q ss_pred             CCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          237 GAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      +|+|++++.|.+++|+++++.|.|||++
T Consensus        82 ~~~i~~~~~v~~~i~~~~i~~g~pa~~~  109 (109)
T cd04647          82 GAVVGAGSVVTKDVPPNSIVAGNPAKVI  109 (109)
T ss_pred             CCEECCCCEEeeECCCCCEEEccccEeC
Confidence            9999999999999999999999999975

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.62  E-value=6.7e-15  Score=123.73  Aligned_cols=106  Identities=25%  Similarity=0.344  Sum_probs=80.7

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEE----------ccCCEECCCCCCCCCCCCEECCCCEECCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSI----------LHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL  229 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I----------~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~  229 (295)
                      .+.||+++.|+++++|... ..++||++|.|+++|.|          +++++|+.....   .++.||++|+||++++|.
T Consensus        18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i---~~~~Ig~~~~Ig~~~~I~   94 (155)
T cd04745          18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAIL---HGCTIGRNALVGMNAVVM   94 (155)
T ss_pred             cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEE---ECCEECCCCEECCCCEEe
Confidence            3567777777777766531 24677777777766655          333333332211   357999999999999999


Q ss_pred             CCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCCC
Q 039045          230 GNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      .+++||++|+|+++++|.+  ++|++++++|+|||++++.+.
T Consensus        95 ~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~  136 (155)
T cd04745          95 DGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD  136 (155)
T ss_pred             CCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence            9999999999999999998  689999999999999998653

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.62  E-value=4.4e-15  Score=128.26  Aligned_cols=49  Identities=57%  Similarity=0.871  Sum_probs=47.4

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA  261 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA  261 (295)
                      .++||++|+||++++|.++++||++|+|+++++|.+++|+++++.|+||
T Consensus       153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~~g~pa  201 (201)
T TIGR03570       153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEEEeccC
Confidence            6899999999999999999999999999999999999999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.61  E-value=6.1e-15  Score=133.71  Aligned_cols=106  Identities=26%  Similarity=0.304  Sum_probs=82.3

Q ss_pred             eeEeCCCceecCceEEcCC-----cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-----TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      .+.||+++.|++++.|..+     ..++||+++.|+.++.|+++++||.......    ..+++||++|+||.++.|.++
T Consensus        76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~  155 (254)
T TIGR01852        76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF  155 (254)
T ss_pred             eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence            5667888888877777643     2566777666666655555555554322211    246899999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++||++++||++++|.+++|+++++.|+|+++.+.
T Consensus       156 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~~~~  190 (254)
T TIGR01852       156 VRIGRYAMIGGLSAVSKDVPPYGLVEGNRARLRGL  190 (254)
T ss_pred             cEECCCCEEeeeeeEeeecCCCcEEecCcCeeccc
Confidence            99999999999999999999999999999998653

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.61  E-value=3e-15  Score=140.29  Aligned_cols=106  Identities=30%  Similarity=0.427  Sum_probs=78.0

Q ss_pred             eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      +.|++++.||.++.|+.+  ..++||+++.|++.|.|+++|+||.......    ..+++||++|+||.++.|.++++||
T Consensus       196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig  275 (324)
T TIGR01853       196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIG  275 (324)
T ss_pred             EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEEC
Confidence            556666666666666532  1345555555555555555555544332211    2468999999999999999999999


Q ss_pred             CCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          236 EGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      ++|+||++|+|++|+|+++++.|+||+.+++-
T Consensus       276 ~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~  307 (324)
T TIGR01853       276 DNVTIGAKSGVTKSIPPPGVYGGIPARPNKEW  307 (324)
T ss_pred             CCCEEccCCEeCCcCCCCcEEEccCccHHHHH
Confidence            99999999999999999999999999998764

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.60  E-value=1e-14  Score=132.17  Aligned_cols=107  Identities=29%  Similarity=0.388  Sum_probs=81.9

Q ss_pred             eeEeCCCceecCceEEcCC-----cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-----TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      ++.||+++.|++++.|..+     ..++||+++.|++++.|+++++||.......    ..+++||++|+||.+++|.++
T Consensus        77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~  156 (254)
T cd03351          77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF  156 (254)
T ss_pred             eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence            5667777777777777642     2466677666666665555555544322211    247899999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      ++||++++||++|+|.+++|+++++.|+|+++.+..
T Consensus       157 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~~~~~  192 (254)
T cd03351         157 CRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLN  192 (254)
T ss_pred             cEECCCCEECcCCEEeeecCCCeEEEccCCeEeccc
Confidence            999999999999999999999999999999876543

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.59  E-value=1.2e-14  Score=132.19  Aligned_cols=88  Identities=30%  Similarity=0.404  Sum_probs=62.3

Q ss_pred             CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC------------
Q 039045          181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI------------  248 (295)
Q Consensus       181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~------------  248 (295)
                      +++||++|+||+||.|++++.|++........+++||++|+||++++|..+++||++|+||+|++|.+            
T Consensus       144 ~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v  223 (272)
T PRK11830        144 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEV  223 (272)
T ss_pred             ccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcE
Confidence            34444444444444555554444322212224689999999999999999999999999999988876            


Q ss_pred             ---CCCCCcEEE-cc-----------CcEEecCCC
Q 039045          249 ---DVPARATAV-GN-----------PARLVGGKE  268 (295)
Q Consensus       249 ---~Vp~~~~v~-G~-----------PA~~i~~~~  268 (295)
                         +||++++++ |.           ||+++++.+
T Consensus       224 ~~g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~  258 (272)
T PRK11830        224 HYGRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVD  258 (272)
T ss_pred             EeeecCCCcEEecCcccccCCCcCCcCcEEEEEcc
Confidence               688888887 73           777777765

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.59  E-value=1.1e-14  Score=127.37  Aligned_cols=106  Identities=34%  Similarity=0.486  Sum_probs=82.3

Q ss_pred             eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKI  234 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~I  234 (295)
                      .+.|++++.|+.++.+..+  ..++||+++.|++++.|+++++|+.......    ..+++||++|+||++++|.++++|
T Consensus        92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~i  171 (205)
T cd03352          92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTI  171 (205)
T ss_pred             eEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEE
Confidence            4667777777777776542  2456666666666666666665554433221    147899999999999999999999


Q ss_pred             CCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       235 G~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      |++++|+++++|.+++|++.++.|+||+++++
T Consensus       172 g~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~  203 (205)
T cd03352         172 GDGVVIGAGSGVTSIVPPGEYVSGTPAQPHRE  203 (205)
T ss_pred             CCCCEEcCCCEEeeECCCCCEEEeecCchhhh
Confidence            99999999999999999999999999998765

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.58  E-value=1.9e-14  Score=125.32  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=78.0

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----cCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----HHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      .+.||+++.|++++.|... ..++||+++.||++|+|.    .++.|+......+   ..+++||++|+||.+++|..++
T Consensus        26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~  105 (192)
T TIGR02287        26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGA  105 (192)
T ss_pred             eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCe
Confidence            3567777777777766421 135566666666665552    2233333222111   1358999999999999999999


Q ss_pred             EECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045          233 KIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE  268 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||++|+|+++++|.++  +|+++++.|+|||+++...
T Consensus       106 ~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~  143 (192)
T TIGR02287       106 VIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELS  143 (192)
T ss_pred             EECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCC
Confidence            99999999999999984  8999999999999998754

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PLN02472 uncharacterized protein

Probab=99.56  E-value=2.5e-14  Score=128.95  Aligned_cols=104  Identities=21%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             eEeCCCceecCceEEcC-CcCeEECCCcEEcCCcEEc----------------cCCEECCCCCCCCCCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDH-ATGVVIGETAVIGNNVSIL----------------HHVTLGGTGKASGDRHPKIGDGVLIGA  224 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~-~~~v~IG~~~~IG~~v~I~----------------~gv~Igg~~~~~~~~~~~IG~~v~IGa  224 (295)
                      +.|++++.|+.+++|.. ...++||.++.|+++|+|.                ++|+||.....   .+++||++|+||.
T Consensus        78 V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L---~~~~Igd~v~IG~  154 (246)
T PLN02472         78 VTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL---RSCTIEPECIIGQ  154 (246)
T ss_pred             EEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE---CCeEEcCCCEECC
Confidence            45555555555554432 2346666666666665553                33333332222   3689999999999


Q ss_pred             CCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +++|+.+++||++|+|+++++|.+  ++|++.++.|+||++++...
T Consensus       155 ~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~  200 (246)
T PLN02472        155 HSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLT  200 (246)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCC
Confidence            999999999999999999999994  59999999999999988765

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.55  E-value=2.1e-14  Score=121.81  Aligned_cols=146  Identities=26%  Similarity=0.359  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHHh--c
Q 039045           33 IKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAAR--V  110 (295)
Q Consensus        33 ~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~--~  110 (295)
                      |+.|.++...+||+..+++. .++.+|+|++...||+++++....+                +.+...+........  .
T Consensus         1 ~~~d~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~yR~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~   63 (162)
T TIGR01172         1 IREDIRAVRERDPAARSYLE-VLLYYPGFHALWAYRFAHYLWKRGF----------------KFLARLLSNFIRVLTGVD   63 (162)
T ss_pred             CHHHHHHHHhCCcccCCeEE-EEEECchHHHHHHHHHHHHHHHccH----------------HHHHHHHHHHHheeeCeE
Confidence            47899999999999999876 4789999999999999999842111                111111110000000  0


Q ss_pred             cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC---
Q 039045          111 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET---  187 (295)
Q Consensus       111 ~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~---  187 (295)
                      -+|.+                   +              ..-...+.+..++.|+++++||++|+|++  +++|+..   
T Consensus        64 I~~~~-------------------~--------------Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~--~v~ig~~~~~  108 (162)
T TIGR01172        64 IHPGA-------------------R--------------IGRGVFIDHGTGVVIGETAVIGDDVTIYH--GVTLGGTGKE  108 (162)
T ss_pred             eCCCC-------------------E--------------ECCCeEECCCCeEEECCCCEECCCCEEcC--CCEECCCccc
Confidence            00100                   0              00122233345678888888888888888  7888753   


Q ss_pred             -----cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          188 -----AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       188 -----~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                           ++||++|.|+.+++|.+        .++||++|+||++++|.++  |.+++++
T Consensus       109 ~~~~~~~Ig~~v~Ig~~a~I~~--------~v~IG~~~~Iga~s~V~~d--vp~~~~~  156 (162)
T TIGR01172       109 KGKRHPTVGEGVMIGAGAKVLG--------NIEVGENAKIGANSVVLKD--VPPGATV  156 (162)
T ss_pred             cCCcCCEECCCcEEcCCCEEEC--------CcEECCCCEECCCCEECCC--CCCCCEE
Confidence                 58888888888888874        6889999999999999886  5666544

Cysteine biosynthesis

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.54  E-value=2.6e-14  Score=135.02  Aligned_cols=106  Identities=31%  Similarity=0.409  Sum_probs=80.8

Q ss_pred             eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      +.|++++.||.+++|+.+  .+++||+++.|+++|.|+++|+||.......    ..+++||++|+||.++.|.++++||
T Consensus       204 v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig  283 (343)
T PRK00892        204 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIG  283 (343)
T ss_pred             EEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEEC
Confidence            556666666666666542  2456666666666666666666665432221    2468999999999999999999999


Q ss_pred             CCCEECCCCEEcCCCCC-CcEEEccCcEEecCC
Q 039045          236 EGAKVGAGSVVLIDVPA-RATAVGNPARLVGGK  267 (295)
Q Consensus       236 ~~~~IgagsvV~~~Vp~-~~~v~G~PA~~i~~~  267 (295)
                      ++++|+++|+|.+|+|+ +..+.|+||+.+++-
T Consensus       284 ~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~  316 (343)
T PRK00892        284 DGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEW  316 (343)
T ss_pred             CCCEEecCCeeCCccCCCCeEEEeecCchHHHH
Confidence            99999999999999999 888899999998753

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.54  E-value=7.2e-14  Score=117.50  Aligned_cols=108  Identities=27%  Similarity=0.407  Sum_probs=83.0

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccC----CEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHH----VTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~g----v~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      .+.||+++.|++++.|... .+++||++|.|+++|.|.+.    ++|+.......   ..+++||++|+||.++.|.+++
T Consensus        18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~   97 (154)
T cd04650          18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGA   97 (154)
T ss_pred             eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCC
Confidence            4667888888888877642 24788888888877775442    33333221111   1357999999999999999999


Q ss_pred             EECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          233 KIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||++++|++++.|.+  ++|++.+++|+||++++..+
T Consensus        98 ~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~  135 (154)
T cd04650          98 KIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLT  135 (154)
T ss_pred             EECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCC
Confidence            9999999999999996  69999999999999998765

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.52  E-value=1.5e-13  Score=116.25  Aligned_cols=111  Identities=22%  Similarity=0.295  Sum_probs=81.4

Q ss_pred             ceeeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccCC------------EECCCCCCCC---CCCCEECCCCEE
Q 039045          159 VFAVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHV------------TLGGTGKASG---DRHPKIGDGVLI  222 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~gv------------~Igg~~~~~~---~~~~~IG~~v~I  222 (295)
                      ..++.|++++.|++++.|... .+++||++|.|+++|.|...+            +|+.......   ..+++||+++.|
T Consensus        19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I   98 (161)
T cd03359          19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI   98 (161)
T ss_pred             CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence            346778888888888877642 246777777777777765432            2332211111   023567888888


Q ss_pred             CCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045          223 GAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       223 Ga~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      |++++|..+++|+++++|+++++|.++  +|+++++.|+||+++++.+.
T Consensus        99 g~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~  147 (161)
T cd03359          99 GKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE  147 (161)
T ss_pred             CCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence            889999999999999999999999988  89999999999999998763

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.49  E-value=1.7e-13  Score=133.42  Aligned_cols=55  Identities=27%  Similarity=0.501  Sum_probs=51.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++|+||.+++|.++++||++++||+||+|.+|+|+++++.|+|++.+++.
T Consensus       390 ~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~  444 (450)
T PRK14360        390 RTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKEN  444 (450)
T ss_pred             CcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccc
Confidence            5789999999999999999999999999999999999999999999999988653

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.47  E-value=2.7e-13  Score=131.75  Aligned_cols=55  Identities=38%  Similarity=0.595  Sum_probs=51.7

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++|+||.+++|.++++||++|+||+|++|.+|||++++++|.|++...+.
T Consensus       390 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~  444 (451)
T TIGR01173       390 KTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEG  444 (451)
T ss_pred             CCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeeccc
Confidence            4789999999999999999999999999999999999999999999999887764

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.47  E-value=4.2e-13  Score=137.26  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=77.9

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK  239 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~  239 (295)
                      .|+.||+++.|+. ..+.....++||++|.|+++|.|.....-++ .  .....++||+||+||++|+|.+|++||++|+
T Consensus       111 lGa~IG~~v~I~~-~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~--l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~  186 (695)
T TIGR02353       111 LGAKIGKGVDIGS-LPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-R--LHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQ  186 (695)
T ss_pred             cCCEECCCCEEEe-eecccCCceEECCCCEECCCCEEEcccCCCC-c--eeecCcEECCCcEECCCCEEcCCCEECCCCE
Confidence            4666666666665 3332233566666666666666644322111 0  1124689999999999999999999999999


Q ss_pred             ECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          240 VGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       240 IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      ||++|+|.+  ++|+++++.|+||+.+++..
T Consensus       187 vgagS~V~~g~~v~~~~~~~G~PA~~~~~~~  217 (695)
T TIGR02353       187 LGHGSALQGGQSIPDGERWHGSPAQKTGADY  217 (695)
T ss_pred             ECCCCEecCCcccCCCCEEEeeCCEEecccc
Confidence            999999999  89999999999999998854

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.45  E-value=1e-12  Score=113.47  Aligned_cols=107  Identities=33%  Similarity=0.443  Sum_probs=87.8

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ...+++++.||+++.|.+  +++|+++++||++|.|+++++|+.        +++||++++|+++++|.++++||++|+|
T Consensus        93 ~a~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~i  162 (201)
T TIGR03570        93 SAIVSPSASIGEGTVIMA--GAVINPDVRIGDNVIINTGAIVEH--------DCVIGDYVHIAPGVTLSGGVVIGEGVFI  162 (201)
T ss_pred             CeEECCCCEECCCCEECC--CCEECCCCEECCCcEECCCCEEcC--------CCEECCCCEECCCCEEeCCcEECCCCEE
Confidence            455777778888888877  778888888888888888888873        6899999999999999999999999999


Q ss_pred             CCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCC
Q 039045          241 GAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPG  278 (295)
Q Consensus       241 gagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~  278 (295)
                      |++++|.+++  .++ .++|.++.+.+..+....+.+.|+
T Consensus       163 g~~~~v~~~~~i~~~-~~i~~~~~v~~~~~~~~~~~g~pa  201 (201)
T TIGR03570       163 GAGATIIQGVTIGAG-AIVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             CCCCEEeCCCEECCC-CEECCCCEECCcCCCCCEEEeccC
Confidence            9999999874  444 456888998887766666666664

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.44  E-value=9.7e-13  Score=128.08  Aligned_cols=55  Identities=38%  Similarity=0.660  Sum_probs=52.2

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      +++||++|+||++++|.++++||++++||+||+|.+|||++++++|+|.++++..
T Consensus       383 ~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~~  437 (448)
T PRK14357        383 PTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKEG  437 (448)
T ss_pred             CcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEeccC
Confidence            5899999999999999999999999999999999999999999999999998753

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.43  E-value=1.3e-12  Score=123.56  Aligned_cols=54  Identities=35%  Similarity=0.574  Sum_probs=49.2

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ..++||++++||+|+.+..+|+||+++.||+||+|++|||++++.++.+-...+
T Consensus       396 ~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~  449 (460)
T COG1207         396 FKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNK  449 (460)
T ss_pred             ceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeec
Confidence            448999999999999999999999999999999999999999999987666554

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.43  E-value=2e-12  Score=110.43  Aligned_cols=105  Identities=35%  Similarity=0.484  Sum_probs=83.5

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      ..+++++.||.++.|.+  +++|+++++||++|.|+++++|+.        +++||++|+|++++++.++++||++|+||
T Consensus        91 ~~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig  160 (197)
T cd03360          91 AVVSPSAVIGEGCVIMA--GAVINPDARIGDNVIINTGAVIGH--------DCVIGDFVHIAPGVVLSGGVTIGEGAFIG  160 (197)
T ss_pred             eEECCCCEECCCCEEcC--CCEECCCCEECCCeEECCCCEECC--------CCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence            45666777777777776  778888888888888888888873        78999999999999999999999999999


Q ss_pred             CCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCC
Q 039045          242 AGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECP  277 (295)
Q Consensus       242 agsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p  277 (295)
                      .+++|.++  +.+++ ++|..+.+.+..+....+.+.|
T Consensus       161 ~~~~v~~~~~ig~~~-~v~~~~~v~~~~~~~~~~~g~p  197 (197)
T cd03360         161 AGATIIQGVTIGAGA-IIGAGAVVTKDVPDGSVVVGNP  197 (197)
T ss_pred             CCCEEcCCCEECCCC-EECCCCEEcCCCCCCCEEEecC
Confidence            99999987  44554 5688888888765444434443

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.9e-13  Score=120.98  Aligned_cols=78  Identities=28%  Similarity=0.438  Sum_probs=70.1

Q ss_pred             CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc
Q 039045          181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG  258 (295)
Q Consensus       181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G  258 (295)
                      .+++|..++||+||.|+.|+.|+|.-.......+.|||||.||+|+.+..||.+|++|+|++|.+|++|+|.+....|
T Consensus       150 ~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g  227 (271)
T COG2171         150 RASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG  227 (271)
T ss_pred             eeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEEeecc
Confidence            677777788999999999999988666566678899999999999999999999999999999999999999888887

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.42  E-value=1.6e-12  Score=108.88  Aligned_cols=106  Identities=30%  Similarity=0.450  Sum_probs=81.8

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------cCCEECCCCCCCCCCCCEECCCCEECCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------HHVTLGGTGKASGDRHPKIGDGVLIGAGATIL  229 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~  229 (295)
                      ++.|++++.|++++.|... ..++||+++.|++++.|.          +++.|+.....   .+++||++++|++++.|.
T Consensus        17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i---~~~~Ig~~~~Ig~~~~v~   93 (153)
T cd04645          17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL---HGCTIGDNCLIGMGAIIL   93 (153)
T ss_pred             eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE---eeeEECCCCEECCCCEEc
Confidence            4667888888888877642 346777777777776443          33344332222   347999999999999999


Q ss_pred             CCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045          230 GNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      ++++||++|+|+++++|.++  +|+++++.|.|++++++.+.
T Consensus        94 ~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~  135 (153)
T cd04645          94 DGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTD  135 (153)
T ss_pred             CCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCH
Confidence            99999999999999999985  89999999999999887753

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.42  E-value=8.4e-13  Score=118.16  Aligned_cols=115  Identities=28%  Similarity=0.430  Sum_probs=83.0

Q ss_pred             eEeCCCceecCceEEcCC----cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC-------
Q 039045          162 VDIHPAAKIGKGILFDHA----TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG-------  230 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~-------  230 (295)
                      +.|++++.|+.++.|+++    .+++|+.+++||++|.|+++++|++        ++.||++|+||++++|.+       
T Consensus        87 ~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~--------~s~Ig~~~~Ig~~~~I~~~~~~~~~  158 (231)
T TIGR03532        87 ARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGG--------RATVGKNVHIGAGAVLAGVIEPPSA  158 (231)
T ss_pred             cEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCC--------CcEECCCcEEcCCcEEccccccccC
Confidence            345555544444444440    0444555556666666666666642        689999999999999975       


Q ss_pred             -CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          231 -NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       231 -~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                       +++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus       159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~  214 (231)
T TIGR03532       159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQV  214 (231)
T ss_pred             CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccC
Confidence             799999999999999998853 556677888888888777777789999877653

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.41  E-value=2.8e-13  Score=119.16  Aligned_cols=112  Identities=31%  Similarity=0.358  Sum_probs=91.9

Q ss_pred             ceeeEeCCCceecCceEEcCCc-----CeEEC------------CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCE
Q 039045          159 VFAVDIHPAAKIGKGILFDHAT-----GVVIG------------ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVL  221 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~-----~v~IG------------~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~  221 (295)
                      ...+.||+++.|-+.++|..++     -+.||            ++|+||++|++..+++|+|        |+.|||.+.
T Consensus        79 ~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG--------HV~igD~ai  150 (260)
T COG1043          79 PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG--------HVEVGDYAI  150 (260)
T ss_pred             ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEec--------cEEECCEEE
Confidence            4567888888888888887653     23344            4577888888888888875        999999999


Q ss_pred             ECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCCCCCCCCCCC
Q 039045          222 IGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPG  278 (295)
Q Consensus       222 IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~  278 (295)
                      ||..+-|-.-|+||++|+||..|-|.+||||++++.|+||++-+-...+.+..+.+.
T Consensus       151 iGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~  207 (260)
T COG1043         151 IGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR  207 (260)
T ss_pred             EcCcceEEEEEEEcchheeccccccccCCCCeEEecCCcccccccceeeeeccCCCH
Confidence            999999999999999999999999999999999999999999876655554455544

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.41  E-value=1.9e-12  Score=126.02  Aligned_cols=55  Identities=35%  Similarity=0.610  Sum_probs=51.4

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++|+||++++|.++++||++++||+||+|.+|+|+++++.|+|....+..
T Consensus       380 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~~~~  434 (446)
T PRK14353        380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQETKPG  434 (446)
T ss_pred             CcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceEeccc
Confidence            5789999999999999999999999999999999999999999999999876643

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.41  E-value=1.3e-12  Score=127.58  Aligned_cols=56  Identities=32%  Similarity=0.614  Sum_probs=51.1

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE-ccCcEEecCCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGGKE  268 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~-G~PA~~i~~~~  268 (295)
                      .++|||+|+||.+++|.++++||++++||+||+|++|||+++++. |.|++.+++-.
T Consensus       394 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~~~~~  450 (456)
T PRK09451        394 KTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQGWQ  450 (456)
T ss_pred             CCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceeccccc
Confidence            478999999999999999999999999999999999999999985 58999987643

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.41  E-value=2.1e-12  Score=112.14  Aligned_cols=48  Identities=40%  Similarity=0.699  Sum_probs=46.3

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP  260 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~P  260 (295)
                      +++||++|+||.+++|.++++||++++|++|++|++|+|+++++.|.|
T Consensus       144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~  191 (193)
T cd03353         144 RTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARA  191 (193)
T ss_pred             CCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEecc
Confidence            578999999999999999999999999999999999999999999976

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=2.2e-12  Score=126.97  Aligned_cols=55  Identities=38%  Similarity=0.599  Sum_probs=50.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE-ccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~-G~PA~~i~~~  267 (295)
                      .++||++|+||.+++|.++++||++++||+|++|.+|+|++++++ |.|++.+++-
T Consensus       399 ~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~  454 (482)
T PRK14352        399 RTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGW  454 (482)
T ss_pred             CCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccc
Confidence            488999999999999999999999999999999999999999764 9999999863

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=2.1e-12  Score=124.97  Aligned_cols=54  Identities=30%  Similarity=0.523  Sum_probs=48.7

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc-cCcEEecC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG-NPARLVGG  266 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G-~PA~~i~~  266 (295)
                      .++||++|+||++++|.++++||++|+||+|++|.+|+|++++++| .|++..++
T Consensus       367 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~  421 (430)
T PRK14359        367 KTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIKN  421 (430)
T ss_pred             CCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehhh
Confidence            4799999999999999999999999999999999999999999987 56665543

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.36  E-value=3e-12  Score=105.77  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.5

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV  250 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V  250 (295)
                      .++.||++|+||++++|  ++.||++|+||+|++|+++.
T Consensus        72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t  108 (147)
T cd04649          72 NVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGT  108 (147)
T ss_pred             cCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCe
Confidence            45899999999999999  79999999999999999984

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.36  E-value=6.3e-12  Score=92.07  Aligned_cols=77  Identities=42%  Similarity=0.592  Sum_probs=53.8

Q ss_pred             eecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045          169 KIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       169 ~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~  247 (295)
                      +||+++.|++  +++|++++.||++|.|+++++|++.........++||++++|+.+++|.++++||++++|+++++|.
T Consensus         2 ~ig~~~~i~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~   78 (78)
T cd00208           2 FIGEGVKIHP--KAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             EECCCeEECC--CCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence            3444444444  4444445666666666666666543221122458999999999999999999999999999999874

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.35  E-value=6.5e-12  Score=122.90  Aligned_cols=53  Identities=25%  Similarity=0.475  Sum_probs=49.1

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      .+.||++|+||.+++|.++++||++|+|++||+|.+|||++++++|.+..+.+
T Consensus       397 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~~~~~~~~~~~~  449 (459)
T PRK14355        397 RTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDSLAIARSPQVNK  449 (459)
T ss_pred             CcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCcEEEeccceecc
Confidence            47899999999999999999999999999999999999999999997777654

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.33  E-value=1.3e-11  Score=98.34  Aligned_cols=92  Identities=25%  Similarity=0.341  Sum_probs=60.9

Q ss_pred             CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------CCCCEECCCCEECCCCE
Q 039045          181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------LGNVKIGEGAKVGAGSV  245 (295)
Q Consensus       181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------~~~v~IG~~~~Igagsv  245 (295)
                      +++|+.+++||++|.|++++.|+.        +++||++|+|++++++               .++++||++|+||++++
T Consensus        10 ~~~i~~~~~Ig~~~~I~~~~~i~~--------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~   81 (119)
T cd03358          10 NVFIENDVKIGDNVKIQSNVSIYE--------GVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT   81 (119)
T ss_pred             CcEECCCcEECCCcEECCCcEEeC--------CeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence            334444455555555555555542        4566666666666655               57889999999999999


Q ss_pred             EcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045          246 VLID--VPARATAVGNPARLVGGKEKTSSNEECPGESM  281 (295)
Q Consensus       246 V~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~  281 (295)
                      |.++  +.++ ..+|..+.+.+..+....+.+.|++.+
T Consensus        82 v~~~~~ig~~-~~i~~~~~v~~~i~~~~~~~G~pa~~~  118 (119)
T cd03358          82 ILPGVTIGEY-ALVGAGAVVTKDVPPYALVVGNPARII  118 (119)
T ss_pred             EeCCcEECCC-CEEccCCEEeCcCCCCeEEecCcceec
Confidence            9876  3444 566777888777666667778888764

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.32  E-value=7.9e-12  Score=114.07  Aligned_cols=89  Identities=19%  Similarity=0.290  Sum_probs=64.3

Q ss_pred             eeEeCCCceecCceEEcCCc--------CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT--------GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~--------~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      |..|++++.|..+++|..+.        ..+|+++|+||++|.|+.++.|+|+-...+...++||++|+||+||+|  ++
T Consensus       165 GAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI  242 (319)
T TIGR03535       165 GAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GI  242 (319)
T ss_pred             ccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--Ce
Confidence            44444444444444444421        134567778888888888888766433333456899999999999999  99


Q ss_pred             EECCCCEECCCCEEcCCCC
Q 039045          233 KIGEGAKVGAGSVVLIDVP  251 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp  251 (295)
                      .||++|+||+|++|+++.|
T Consensus       243 ~IGd~~VVGAGaVVtkgT~  261 (319)
T TIGR03535       243 SLGDDCVVEAGLYVTAGTK  261 (319)
T ss_pred             EECCCCEECCCCEEeCCeE
Confidence            9999999999999999854

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.32  E-value=1.2e-11  Score=108.47  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=79.0

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------------  229 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------------  229 (295)
                      +|+++.|.+++++..+.++.||+++.|+.+|+|.++            ..++||++|.||++|+|.              
T Consensus        58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~------------~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g  125 (203)
T PRK09527         58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDD------------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNG  125 (203)
T ss_pred             cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecC------------CCEEECCCCEECCCCEEEeCCCCCChhhcccc
Confidence            677777777776654445555555555444444322            146888888888888875              


Q ss_pred             ----CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          230 ----GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       230 ----~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                          .+++||++|+||++++|.+++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus       126 ~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~  185 (203)
T PRK09527        126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREI  185 (203)
T ss_pred             ccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccC
Confidence                2489999999999999999853 555677888888888877888889999877654

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.32  E-value=8.1e-12  Score=127.89  Aligned_cols=99  Identities=31%  Similarity=0.465  Sum_probs=73.2

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      ..|++||+++.|+.....++ ..++||++|.|+++|.|..+..-.  +.. ..++++||++|+||++|+|+++++||++|
T Consensus       595 ~lGa~IG~~v~i~~~~~~~~-dlv~IGd~~~I~~~~~i~~h~~~~--~~~-~~~~v~IG~~~~IG~~a~V~~g~~IGd~a  670 (695)
T TIGR02353       595 LLGVKIGRGVYIDGTDLTER-DLVTIGDDSTLNEGSVIQTHLFED--RVM-KSDTVTIGDGATLGPGAIVLYGVVMGEGS  670 (695)
T ss_pred             HCCCEECCCeEECCeeccCC-CCeEECCCCEECCCCEEEeccccc--ccc-ccCCeEECCCCEECCCCEECCCCEECCCC
Confidence            34666666666665544443 246677777776666665432111  111 12479999999999999999999999999


Q ss_pred             EECCCCEEcC--CCCCCcEEEccCc
Q 039045          239 KVGAGSVVLI--DVPARATAVGNPA  261 (295)
Q Consensus       239 ~IgagsvV~~--~Vp~~~~v~G~PA  261 (295)
                      +||++|+|.+  ++|+++++.|+||
T Consensus       671 ~Ig~~SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       671 VLGPDSLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             EECCCCEEcCCcccCCCCEEEeccC
Confidence            9999999999  6999999999997

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.31  E-value=5.4e-12  Score=116.61  Aligned_cols=106  Identities=33%  Similarity=0.463  Sum_probs=84.7

Q ss_pred             eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKI  234 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~I  234 (295)
                      .+.|++++.||.+++|+++  ..++||+++.|.+-|.|+++|+||......+    ...++||++|.||..+.|.+..+|
T Consensus       202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~I  281 (338)
T COG1044         202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEI  281 (338)
T ss_pred             eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEE
Confidence            4777777788888888773  1277777777777777777777775533221    245899999999999999999999


Q ss_pred             CCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       235 G~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ||++.|++.+-|.++||++..+.|.|++.+++
T Consensus       282 gD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~  313 (338)
T COG1044         282 GDGVTIGARSGVMASITEPGYSGGIPAQPIKE  313 (338)
T ss_pred             cCCCEEecccccccccCCCceeccCCCchHHH
Confidence            99999999999999999888888899998875

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.29  E-value=4.7e-11  Score=98.54  Aligned_cols=95  Identities=23%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------CCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------GNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------~~v  232 (295)
                      ++.|++++.|++++.|.+  ++.++.++.||++|.|+++++|+.        +++||++|.|+++++|.        .++
T Consensus         7 ~~~i~~~~~Ig~~~~I~~--~~~i~~~~~IG~~~~I~~~~~I~~--------~~~IG~~~~I~~~~~igg~~~~~~~~~v   76 (139)
T cd03350           7 GAIIRDGAFIGPGAVLMM--PSYVNIGAYVDEGTMVDSWATVGS--------CAQIGKNVHLSAGAVIGGVLEPLQATPV   76 (139)
T ss_pred             CcEECCCCEECCCCEECC--CCEEccCCEECCCeEEcCCCEECC--------CCEECCCCEECCCCEECCcccccccCCe
Confidence            455666677777777766  677777788888888888888873        68999999999999987        358


Q ss_pred             EECCCCEECCCCEEcCCCC-CCcEEEccCcEEec
Q 039045          233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG  265 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~  265 (295)
                      +||++|+||++++|..++- ....++|.-+.+..
T Consensus        77 ~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~  110 (139)
T cd03350          77 IIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ  110 (139)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence            8999999999999887742 33344555555553

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.28  E-value=3.8e-11  Score=104.99  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      +++||++++|++++.|.++++||++|+||++++|..+  +++++++ |.-+.+.+..+..+.+.+.|++.++.
T Consensus       132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i-~~~s~v~~~~~~~~~~~G~pa~~~~~  203 (205)
T cd03352         132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVI-GAGSGVTSIVPPGEYVSGTPAQPHRE  203 (205)
T ss_pred             CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEE-cCCCEEeeECCCCCEEEeecCchhhh
Confidence            4566666667777777789999999999999999998  5666665 44577778788888888999987654

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.28  E-value=1.2e-11  Score=114.26  Aligned_cols=79  Identities=41%  Similarity=0.570  Sum_probs=64.3

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      ..|+|++.+++++.|++  +++|+.++.||+||.|++++.||.        +++||++++|.+|++|..++.||++|.|+
T Consensus       106 A~i~~~A~i~~~~~ig~--~~vI~~~v~IG~~~~I~~~~vIg~--------~~~IG~~~~i~~~v~I~~~~~IG~~v~I~  175 (338)
T COG1044         106 AVIDPTATIGKNVSIGP--NVVIGAGVVIGENVVIGAGAVIGE--------NVKIGDGTVIHPNVTIYHNVVIGNNVIIH  175 (338)
T ss_pred             ccccCcCccCCCCccCC--CeEECCCCEECCCcEECCCCEECC--------CcEECCCcEEcCCCEEecCcEECCceEEC
Confidence            44777788888888877  788888888888888888888873        78888888888888888888888888888


Q ss_pred             CCCEEcCCC
Q 039045          242 AGSVVLIDV  250 (295)
Q Consensus       242 agsvV~~~V  250 (295)
                      +|++|..|.
T Consensus       176 ~GavIG~dg  184 (338)
T COG1044         176 SGAVIGADG  184 (338)
T ss_pred             CCCEEccCc
Confidence            888888773

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=2.5e-11  Score=118.50  Aligned_cols=52  Identities=31%  Similarity=0.567  Sum_probs=49.2

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      +++||++++||.+++|.++++||++++||+||+|.+|+|++++++|.|.-+.
T Consensus       393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~  444 (458)
T PRK14354        393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVN  444 (458)
T ss_pred             CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceec
Confidence            5889999999999999999999999999999999999999999999987763

>PRK10502 putative acyl transferase; Provisional

Probab=99.27  E-value=2.4e-11  Score=105.00  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             hhccccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE----
Q 039045          153 QSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI----  228 (295)
Q Consensus       153 ~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I----  228 (295)
                      ...+...++..||+++.|++++.|..+..++||+++.||+++.|....            .++||++|.|+.+++|    
T Consensus        43 r~~~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~------------~v~IG~~~~I~~~~~I~~~~  110 (182)
T PRK10502         43 RAFLLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLG------------EITIGAHCVISQKSYLCTGS  110 (182)
T ss_pred             HHHHHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccC------------ceEECCCcEECCCeEEECCC
Confidence            444445678889999999999988765567788887777777776421            2345555555555444    


Q ss_pred             -----------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          229 -----------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       229 -----------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                                 .++++||++|+||++++|..++. ....++|..+.+.+..+....+.+.|++.++..
T Consensus       111 h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r  178 (182)
T PRK10502        111 HDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR  178 (182)
T ss_pred             CCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence                       35689999999999999998853 344666788888888887778889999876543

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.27  E-value=3.5e-11  Score=117.46  Aligned_cols=55  Identities=36%  Similarity=0.599  Sum_probs=50.2

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||+++++|.+++|.++++||++++||+|++|.+|+|++++++|..-......
T Consensus       398 ~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~~~~~~~  452 (456)
T PRK14356        398 RTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKNLPR  452 (456)
T ss_pred             CCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecceeehhh
Confidence            4799999999999999999999999999999999999999999999877665543

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.26  E-value=8.9e-11  Score=100.10  Aligned_cols=105  Identities=22%  Similarity=0.322  Sum_probs=68.6

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      +++++.|..++.+..+.++.||+++.|+.++.|.+.            ..++||++|+|+++|+|               
T Consensus        45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~------------~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~  112 (169)
T cd03357          45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDV------------APVTIGDNVLIGPNVQIYTAGHPLDPEERNRG  112 (169)
T ss_pred             cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEecc------------CcEEECCCCEECCCCEEEeCCCCCChhHcccc
Confidence            455566666555544334444444444444433311            13566666666666666               


Q ss_pred             ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                         .++++||++|+||++++|.+++. ....++|..+.+.+..+....+.+.|++.
T Consensus       113 ~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkv  168 (169)
T cd03357         113 LEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARV  168 (169)
T ss_pred             ceecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEE
Confidence               45788999999999999988753 55567788889988887777778888864

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.25  E-value=7.4e-11  Score=107.01  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      ++++||++|+|++++.|.++++||++|+||+++.|.+++  .+++++ |..+.+-+.........+.|++.+.
T Consensus       118 ~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~I-g~~s~V~~~i~~~~~~~G~pa~~~~  189 (254)
T TIGR01852       118 HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMI-GGLSAVSKDVPPYGLVEGNRARLRG  189 (254)
T ss_pred             cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEE-eeeeeEeeecCCCcEEecCcCeecc
Confidence            467889999999999999999999999999999999884  466544 4455555555555555678888754

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.25  E-value=9.6e-11  Score=101.33  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             EECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC------------------CCCEECCCCEECCCC
Q 039045          183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL------------------GNVKIGEGAKVGAGS  244 (295)
Q Consensus       183 ~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~------------------~~v~IG~~~~Igags  244 (295)
                      .+|.++.||+++.|+.+++|+..      ..++||++|.|+++|+|.                  ++++||++|+||+++
T Consensus        69 ~~g~~i~iG~~~~in~~~~i~d~------~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a  142 (183)
T PRK10092         69 DYGYNIFLGNNFYANFDCVMLDV------CPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRA  142 (183)
T ss_pred             eecCCcEEcCCcEECCceEEecC------ceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCC
Confidence            34445555555555555555432      124888888888888884                  679999999999999


Q ss_pred             EEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          245 VVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       245 vV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      +|.+++- ....++|.-+.+.+..+......++|++.+++
T Consensus       143 ~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~  182 (183)
T PRK10092        143 VINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  182 (183)
T ss_pred             EECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence            9998853 44456788888888877777778999987654

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.24  E-value=1.1e-10  Score=101.61  Aligned_cols=116  Identities=18%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC---------
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL---------  229 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~---------  229 (295)
                      ...+.+|+++.++.++.++.    .......||++|.|+++++|...      ..++||++|.|++++.|.         
T Consensus        41 ~~~I~iG~~v~i~~~~ri~~----~~~~~i~IG~~v~Ig~~v~I~~~------~~v~IG~~v~Ig~~v~I~~~~hg~~~~  110 (192)
T PRK09677         41 DGSINFGEGFTSGVGLRLDA----FGRGKLFFGDNVQVNDYVHIACI------ESITIGRDTLIASKVFITDHNHGSFKH  110 (192)
T ss_pred             CCeEEECCceEECCCeEEEe----cCCCeEEECCCCEECCCcEEccC------ceEEECCCCEECCCeEEECCCCccccc
Confidence            34455666666666665521    11233455555555555555421      135677777777766664         


Q ss_pred             ------------------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          230 ------------------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       230 ------------------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                                        ++++||++|+||++++|.+++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~  184 (192)
T PRK09677        111 SDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKY  184 (192)
T ss_pred             cccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEecc
Confidence                              3578999999999999998753 555677888888888777777789999877554

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.24  E-value=5.1e-11  Score=112.64  Aligned_cols=37  Identities=41%  Similarity=0.639  Sum_probs=15.4

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL  202 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I  202 (295)
                      |++++.||++++|++  +++|++++.||++|.|+++++|
T Consensus       109 v~~~~~ig~~~~I~~--~~~I~~~~~IG~~~~I~~~~~I  145 (343)
T PRK00892        109 IDPSAKIGEGVSIGP--NAVIGAGVVIGDGVVIGAGAVI  145 (343)
T ss_pred             ECCCCEECCCCEECC--CeEEeccceeCCCcEECCCCEE
Confidence            444444444444443  3344444444444444443333

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.23  E-value=1e-10  Score=102.15  Aligned_cols=115  Identities=23%  Similarity=0.328  Sum_probs=78.6

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCc---------EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETA---------VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~---------~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      ++.|++++.|..++.|++  ++.|+.++         +||++|.|+++|+|+....    .++.||+++.||+++++ .+
T Consensus        16 ~a~I~~~a~I~g~V~IG~--~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~----~~siIg~~~~Ig~~a~i-~g   88 (196)
T PRK13627         16 TAFVHPSAVLIGDVIVGA--GVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD----TDTIVGENGHIGHGAIL-HG   88 (196)
T ss_pred             CeEECCCCEEECceEECC--CCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC----CCCEECCCCEECCCcEE-ee
Confidence            344555555444444444  44444443         5677788888888865332    36899999999999976 67


Q ss_pred             CEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCC--CCCCCCCCCCCccccc
Q 039045          232 VKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGK--EKTSSNEECPGESMDH  283 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~--~~~~~~~~~p~~~~~~  283 (295)
                      ++||++|+||.+++|..++  .++ .++|.-+.+.+..  +....+.+.|++..+.
T Consensus        89 ~vIG~~v~IG~ga~V~~g~~IG~~-s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~  143 (196)
T PRK13627         89 CVIGRDALVGMNSVIMDGAVIGEE-SIVAAMSFVKAGFQGEKRQLLMGTPARAVRS  143 (196)
T ss_pred             EEECCCCEECcCCccCCCcEECCC-CEEcCCCEEeCCcCcCCCcEEEecCCEEecc
Confidence            8899999999999998873  444 5556666666654  3455667899887654

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.22  E-value=7.1e-11  Score=107.11  Aligned_cols=37  Identities=30%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCC
Q 039045          213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~  249 (295)
                      .++||++|.|+++|+|..       .++||++|.|++++.|..+
T Consensus        77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~  120 (254)
T cd03351          77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD  120 (254)
T ss_pred             eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCC
Confidence            467777777777777753       4777777777777777544

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.22  E-value=8.7e-11  Score=106.69  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      ++++||++|+|+.++++.++++||++|+||+++.|.+.+  .+++.+ |.-+.+.+..+......++|++.
T Consensus       118 hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~V-g~gs~V~~dVpp~~i~~G~pa~~  187 (255)
T PRK12461        118 HDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMM-AGGSRISKDVPPYCMMAGHPTNV  187 (255)
T ss_pred             CCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEE-CCCceEeccCCCCeEEecCcceE
Confidence            468888888888999999999999999999999999985  455555 44577777777666667889874

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.22  E-value=1e-10  Score=109.82  Aligned_cols=76  Identities=36%  Similarity=0.550  Sum_probs=46.5

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      ..|++++.||+++.|.+  +++|+++++||++|.|+.+++|++        +++||++|.|+++++|.++++||++|+|+
T Consensus        98 a~i~~~a~Ig~~v~I~~--~~~I~~~v~IG~~~~I~~~~~Ig~--------~~~IG~~~~I~~~~~I~~~~~IG~~~~I~  167 (324)
T TIGR01853        98 AVVDPSAKIGDGVTIGP--NVVIGAGVEIGENVIIGPGVVIGD--------DVVIGDGSRIHPNVVIYERVQLGKNVIIH  167 (324)
T ss_pred             CEeCCCcEECCCCEECC--CcEEccCcEECCcEEECCCCEECC--------cceeCCCceECCCcEECCCCEECCCCEEC
Confidence            44666666666666665  566666666666666666666653        45666666666666665566666666666


Q ss_pred             CCCEEc
Q 039045          242 AGSVVL  247 (295)
Q Consensus       242 agsvV~  247 (295)
                      ++++|.
T Consensus       168 ~~~vIg  173 (324)
T TIGR01853       168 SGAVIG  173 (324)
T ss_pred             CCcEEC
Confidence            666664

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.21  E-value=9.5e-11  Score=106.84  Aligned_cols=37  Identities=30%  Similarity=0.200  Sum_probs=21.4

Q ss_pred             CCEECCCCEECCCCEECCC-------CEECCCCEECCCCEEcCC
Q 039045          213 HPKIGDGVLIGAGATILGN-------VKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~-------v~IG~~~~IgagsvV~~~  249 (295)
                      .+.||++|.|+.+++|..+       ++||++|.|++++.|..+
T Consensus        80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~  123 (262)
T PRK05289         80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHD  123 (262)
T ss_pred             eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCe
Confidence            3556666666666666433       356666666666655544

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.20  E-value=1.9e-10  Score=104.31  Aligned_cols=92  Identities=17%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------CCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------GNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------~~v  232 (295)
                      +..|.+++.||+++.|.+  + .+..++.||++|.|..+++||.        ++.||++|.|++++.|.        .++
T Consensus       106 ~a~i~~ga~Ig~~vvI~p--~-~Vniga~IGeGt~I~~~a~IG~--------~v~IG~nv~I~~g~~IgG~~ep~~~~~V  174 (269)
T TIGR00965       106 GAAVRQGAFIAKNVVLMP--S-YVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPT  174 (269)
T ss_pred             CcEECCCcEECCCCEEee--e-EEcCCcEECCCCEECCCcEECC--------CCEECCCCEEcCCcccCCCcccCCCCCe
Confidence            344555555555555554  2 3455577888888888888874        68999999999988885        458


Q ss_pred             EECCCCEECCCCEEcCCCC-CCcEEEccCcEE
Q 039045          233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARL  263 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~  263 (295)
                      +||++|+||++++|.+++- ....++|.-+.+
T Consensus       175 iIgDnv~IGa~a~I~~GV~IG~gavIGaGavI  206 (269)
T TIGR00965       175 IIEDNCFIGARSEIVEGVIVEEGSVISMGVFI  206 (269)
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence            8999999999999888743 333344444444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.18  E-value=2.7e-10  Score=95.71  Aligned_cols=112  Identities=21%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             eCCCceecCceEEcCCcCeEECC---CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGE---TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~---~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      |..++.||+++.|.+  +++|..   .++||++|.|+++++|...    ...+++||++|+|+.++.+ .+++||++|+|
T Consensus        15 i~g~v~IG~~~~I~~--~~~i~~~~~~i~IG~~~~Ig~~~~I~~~----~~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~I   87 (155)
T cd04745          15 LIGDVIIGKNCYIGP--HASLRGDFGRIVIRDGANVQDNCVIHGF----PGQDTVLEENGHIGHGAIL-HGCTIGRNALV   87 (155)
T ss_pred             EEccEEECCCCEECC--CcEEeCCCCcEEECCCCEECCCCEEeec----CCCCeEEcCCCEECCCcEE-ECCEECCCCEE
Confidence            333444555555554  444443   3577788888888888421    1136899999999999977 57999999999


Q ss_pred             CCCCEEcCC--CCCCcEEEccCcEEecC--CCCCCCCCCCCCccccc
Q 039045          241 GAGSVVLID--VPARATAVGNPARLVGG--KEKTSSNEECPGESMDH  283 (295)
Q Consensus       241 gagsvV~~~--Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~  283 (295)
                      |++++|..+  +.++ .++|.-+.+.+.  ......+.+.|++.++.
T Consensus        88 g~~~~I~~g~~Ig~~-~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~  133 (155)
T cd04745          88 GMNAVVMDGAVIGEE-SIVGAMAFVKAGTVIPPRSLIAGSPAKVIRE  133 (155)
T ss_pred             CCCCEEeCCCEECCC-CEECCCCEeCCCCEeCCCCEEecCCceEecc
Confidence            999999886  3444 455666666552  33444556889887765

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.17  E-value=2.6e-10  Score=96.87  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             eEeCCCceecCceEEcCCcCeEEC---CCcEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIG---ETAVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG---~~~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ..|.+++.||+++.|.+  +++|.   ..++||++|.|+++++|......  .....+.||+++.|..++.|.+ ++||+
T Consensus        12 a~i~g~v~IG~~~~I~~--~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd   88 (164)
T cd04646          12 SEIRGDVTIGPGTVVHP--RATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGN   88 (164)
T ss_pred             CEEcCceEECCCCEEcC--CeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECC
Confidence            34556667777777776  66664   44788999999999999754221  1123578999999999999854 99999


Q ss_pred             CCEECCCCEEcCCCC-CCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045          237 GAKVGAGSVVLIDVP-ARATAVGNPARLVGG--KEKTSSNEECPGESMDHT  284 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~  284 (295)
                      +|+||++++|.+++- ....++|.-+.+.+.  .++.....+.|+...++.
T Consensus        89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~  139 (164)
T cd04646          89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT  139 (164)
T ss_pred             CCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC
Confidence            999999999998743 445566666777664  344444456777666554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.16  E-value=2.6e-10  Score=100.26  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          230 GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      .+++||++|+||.+++|..++- ....++|..+.+.+..+....+.+.|+..+++.
T Consensus       107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~  162 (204)
T TIGR03308       107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR  162 (204)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence            4778888888888888887743 444667778888888777777789999888765

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.15  E-value=5.5e-10  Score=95.05  Aligned_cols=95  Identities=25%  Similarity=0.365  Sum_probs=56.6

Q ss_pred             eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEc----cCCEECCCCCCCC----CCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSIL----HHVTLGGTGKASG----DRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ++.||+++.|++++.|...  ..++||+++.|++++.|.    +.+.||.......    ..+++||++|+||+++.|. 
T Consensus        20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-   98 (167)
T cd00710          20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-   98 (167)
T ss_pred             eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-
Confidence            4556666666666666532  235666666666555541    1222222211111    1247888888888888885 


Q ss_pred             CCEECCCCEECCCCEEcC-CCCCCcEE
Q 039045          231 NVKIGEGAKVGAGSVVLI-DVPARATA  256 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~-~Vp~~~~v  256 (295)
                      +++||++|+||++|+|.. .++++.++
T Consensus        99 ~~~Ig~~~~Ig~~s~i~~~~i~~~~~v  125 (167)
T cd00710          99 NAKVGDNCVIGHNAVVDGVEIPPGRYV  125 (167)
T ss_pred             CCEECCCCEEcCCCEEeCCEeCCCCEE
Confidence            688888888888888865 45666655

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.15  E-value=2.2e-10  Score=113.02  Aligned_cols=47  Identities=40%  Similarity=0.645  Sum_probs=44.1

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG  258 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G  258 (295)
                      ..++||++|+||++++|.++++||++++|++||+|.+|+|++.++++
T Consensus       398 ~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~  444 (481)
T PRK14358        398 HQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVA  444 (481)
T ss_pred             CCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEe
Confidence            34799999999999999999999999999999999999999999885

>PLN02472 uncharacterized protein

Probab=99.12  E-value=4.8e-10  Score=101.19  Aligned_cols=113  Identities=13%  Similarity=0.103  Sum_probs=73.7

Q ss_pred             CceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          167 AAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      ++.||+++.|.+  +++|..+   .+||++|.|+++|+|+.....  .-..+++||++|.||++|+| .+++||++|.||
T Consensus        77 ~V~Ig~~a~I~~--gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L-~~~~Igd~v~IG  153 (246)
T PLN02472         77 QVTVWDGASVWN--GAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL-RSCTIEPECIIG  153 (246)
T ss_pred             CEEECCCCEEcC--CCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE-CCeEEcCCCEEC
Confidence            344444444444  3333322   568888899999988643211  11136899999999999988 589999999999


Q ss_pred             CCCEEcCCC--CCCcEEEccCcEEec--CCCCCCCCCCCCCccccc
Q 039045          242 AGSVVLIDV--PARATAVGNPARLVG--GKEKTSSNEECPGESMDH  283 (295)
Q Consensus       242 agsvV~~~V--p~~~~v~G~PA~~i~--~~~~~~~~~~~p~~~~~~  283 (295)
                      .+++|..+.  ..+ .++|.-+.+-.  ....+..+.+.|++.++.
T Consensus       154 ~~svI~~gavIg~~-~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~  198 (246)
T PLN02472        154 QHSILMEGSLVETH-SILEAGSVLPPGRRIPTGELWAGNPARFVRT  198 (246)
T ss_pred             CCCEECCCCEECCC-CEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence            999998873  344 44444444442  233445567889887654

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.12  E-value=4.4e-10  Score=109.43  Aligned_cols=68  Identities=21%  Similarity=0.309  Sum_probs=51.2

Q ss_pred             CCEECCCCEECCCCEE-------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          213 HPKIGDGVLIGAGATI-------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I-------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      +++||++|.||+++++       ..+++||++|+||++++|.+++. ....++|..+.+.+..+....+.+.|...
T Consensus       355 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~  430 (446)
T PRK14353        355 DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQE  430 (446)
T ss_pred             CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceE
Confidence            3577888888888876       34799999999999999998853 33445588998888877666555666543

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.12  E-value=3.1e-10  Score=93.89  Aligned_cols=94  Identities=22%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEc----cCCEECCCCCCCCCCCCEECCCCEECCCCEECCC----C
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSIL----HHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN----V  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~----v  232 (295)
                      +..+.+.+.||+|++|.+  +.++..++.||++|.|.    .+++|+        +++.||++|.|.  +.+.++    +
T Consensus         7 ~~~V~~~a~IG~GtvI~~--gavV~~~a~IG~~~iIn~~ig~~a~Ig--------hd~~IG~~~~I~--~~l~G~~~~pV   74 (147)
T cd04649           7 ADRVRLGAYLAEGTTVMH--EGFVNFNAGTLGNCMVEGRISSGVIVG--------KGSDVGGGASIM--GTLSGGGNNVI   74 (147)
T ss_pred             CCEECCCCEECCCcEECC--CCEEccCCEECCCeEECCcccCCEEEC--------CCCEECCCCEEE--EECCCCcccCE
Confidence            456777788888888887  77888888888888877    777776        467888888777  566677    9


Q ss_pred             EECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          233 KIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .||++|+||++++|.-.|+++ .++|.-+.+.+..
T Consensus        75 ~IG~~~~IG~ga~Igv~IG~~-~vIGaGsvV~k~t  108 (147)
T cd04649          75 SIGKRCLLGANSGIGISLGDN-CIVEAGLYVTAGT  108 (147)
T ss_pred             EECCCCEECCCCEEeEEECCC-CEECCCCEEeCCe
Confidence            999999999999995556655 4556677776653

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PLN02296 carbonate dehydratase

Probab=99.12  E-value=5.9e-10  Score=101.83  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             ceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECCCCEECC
Q 039045          168 AKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA  242 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Iga  242 (295)
                      +.||+++.|.+  +++|...   ++||++|.|+++++|......  ....+++||++|+||++|+| .+++||++|+||.
T Consensus        71 V~IG~~~~I~~--gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI-~g~~Igd~v~IG~  147 (269)
T PLN02296         71 VQVGRGSSIWY--GCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL-HGCTVEDEAFVGM  147 (269)
T ss_pred             eEECCCCEECC--CCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee-cCCEECCCcEECC
Confidence            34555555554  4455443   378888888888888632111  11246899999999999987 6799999999999


Q ss_pred             CCEEcCCC--CCCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045          243 GSVVLIDV--PARATAVGNPARLVGG--KEKTSSNEECPGESMDHT  284 (295)
Q Consensus       243 gsvV~~~V--p~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~  284 (295)
                      +++|.+++  .++ .++|.-+.+.+.  .+....+.+.|++.++..
T Consensus       148 ga~I~~gv~Ig~~-a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~  192 (269)
T PLN02296        148 GATLLDGVVVEKH-AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKL  192 (269)
T ss_pred             CcEECCCeEECCC-CEECCCCEEecCCEeCCCeEEeccCcEEeCCC
Confidence            99999874  455 445555666655  334445568888876543

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.11  E-value=5.5e-10  Score=95.05  Aligned_cols=74  Identities=30%  Similarity=0.384  Sum_probs=55.4

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      +.||++|.|+++++|....    ...+.||++++|++++.|.++++||++|+||++++|....-...+++|..+.+.+
T Consensus        43 v~IG~~~~I~~~~~i~~~~----~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~  116 (167)
T cd00710          43 IIIGANVNIQDGVVIHALE----GYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG  116 (167)
T ss_pred             EEECCCCEECCCeEEEecC----CCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC
Confidence            3466666666666664211    1358899999999999999999999999999999998665455566777777753

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.09  E-value=6.8e-10  Score=96.75  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=62.2

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEec
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVG  265 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~  265 (295)
                      ++||++|.|+++|+|.+..    ..++.||++|.||.+++| .+++||++|.||.+++|..+  +.++ .++|.-+.+.+
T Consensus        48 i~Ig~~t~Ig~~~~I~~~~----~~~siIg~~~~Ig~~a~I-~~siIg~~~~IG~ga~I~~g~~IG~~-s~Vgags~V~~  121 (192)
T TIGR02287        48 IVLKEGANIQDNCVMHGFP----GQDTVVEENGHVGHGAIL-HGCIVGRNALVGMNAVVMDGAVIGEN-SIVAASAFVKA  121 (192)
T ss_pred             eEECCCCEECCCeEEeccC----CCCCeECCCCEECCCCEE-cCCEECCCCEECCCcccCCCeEECCC-CEEcCCCEECC
Confidence            4556777777777774321    136899999999999976 67999999999999999876  3444 44444555544


Q ss_pred             C--CCCCCCCCCCCCccccc
Q 039045          266 G--KEKTSSNEECPGESMDH  283 (295)
Q Consensus       266 ~--~~~~~~~~~~p~~~~~~  283 (295)
                      .  ........+.|++..+.
T Consensus       122 ~~~ip~~~l~~G~Pak~i~~  141 (192)
T TIGR02287       122 GAEMPAQYLVVGSPAKVIRE  141 (192)
T ss_pred             CCEECCCeEEEccCCEEecc
Confidence            2  22344456789887764

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.09  E-value=9.1e-10  Score=93.09  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=10.7

Q ss_pred             CCEECCCCEECCCCEEcCC
Q 039045          231 NVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~  249 (295)
                      ++.||++|+||.+++|.++
T Consensus       129 ~~iIg~~~~ig~~~~i~~g  147 (163)
T cd05636         129 GAIIGDGVKTGINVSLNPG  147 (163)
T ss_pred             CcEEcCCeEECCCcEECCC
Confidence            4555555555555555554

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.08  E-value=3.1e-10  Score=104.29  Aligned_cols=60  Identities=25%  Similarity=0.427  Sum_probs=44.3

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~  249 (295)
                      ++||++|.|+.++.|++.-...+...+.||++|+||+|++|  ++.||++|+||+|++|+.+
T Consensus       225 avIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       225 VMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             CEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCC
Confidence            34555555555555543222222233899999999999999  9999999999999999987

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.04  E-value=2.2e-09  Score=90.18  Aligned_cols=112  Identities=22%  Similarity=0.245  Sum_probs=75.9

Q ss_pred             eCCCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      |.+.+.||+++.|.+  +++|...   ++||++|.|+++++|.+...    .+++||+++.|+.++.+ .++.||++|+|
T Consensus        15 i~~~v~iG~~~~I~~--~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~----~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~I   87 (154)
T cd04650          15 VIGDVVIGELTSVWH--YAVIRGDNDSIYIGKYSNVQENVSIHTDHG----YPTEIGDYVTIGHNAVV-HGAKVGNYVIV   87 (154)
T ss_pred             EEeeEEECCCCEEcC--CeEEEcCCCcEEECCCCEECCCCEEEeCCC----CCeEECCCCEECCCcEE-ECcEECCCCEE
Confidence            444455556666655  5555544   57888888888888864211    35899999999999988 68899999999


Q ss_pred             CCCCEEcCC--CCCCcEEEccCcEEec--CCCCCCCCCCCCCccccc
Q 039045          241 GAGSVVLID--VPARATAVGNPARLVG--GKEKTSSNEECPGESMDH  283 (295)
Q Consensus       241 gagsvV~~~--Vp~~~~v~G~PA~~i~--~~~~~~~~~~~p~~~~~~  283 (295)
                      +.++++..+  +.+++++ |.-+.+..  +......+.+.|++.++.
T Consensus        88 g~~~~i~~~~~Ig~~~~v-g~~~~v~~g~~i~~~~v~~G~pa~~~~~  133 (154)
T cd04650          88 GMGAILLNGAKIGDHVII-GAGAVVTPGKEIPDYSLVLGVPAKVVRK  133 (154)
T ss_pred             cCCCEEeCCCEECCCCEE-CCCCEECCCcEeCCCCEEeccCceEecc
Confidence            999999876  3455444 43444432  233444556788887754

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.02  E-value=2.1e-09  Score=98.15  Aligned_cols=78  Identities=22%  Similarity=0.287  Sum_probs=50.0

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------CC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------NV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------~v  232 (295)
                      ++.|++++.|++++.|.+   ..++.++.||++|+|+.+++||.        .+.||++|.|++++.|.+        ++
T Consensus       109 ~a~V~~ga~Ig~gavI~p---~~V~iGa~Ig~gt~I~~~a~IG~--------~a~IG~nv~I~~gv~I~g~~~~~~~~~v  177 (272)
T PRK11830        109 GAVVRRGAYIAPNVVLMP---SYVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPV  177 (272)
T ss_pred             CeEECCCCEECCCcEEEE---EEECCCCEECCCcEEccccEECC--------CCEECCCcEECCCccCCCCccccCcCCe
Confidence            344555555555555552   34555667777777777777763        567777777777776654        46


Q ss_pred             EECCCCEECCCCEEcCC
Q 039045          233 KIGEGAKVGAGSVVLID  249 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~  249 (295)
                      +||++|+||++++|..+
T Consensus       178 iIgDnv~IGa~s~I~~G  194 (272)
T PRK11830        178 IIEDNCFIGARSEVVEG  194 (272)
T ss_pred             EEcCCCEECCCCEEcCC
Confidence            77777777777666554

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=6.4e-10  Score=109.34  Aligned_cols=26  Identities=4%  Similarity=0.106  Sum_probs=21.7

Q ss_pred             cchhhcccchhhHHHHHHHHHHHHhc
Q 039045          118 FSHCLLNYKGFLACQAHRVAHKLWTQ  143 (295)
Q Consensus       118 ~~~~~~~~~gf~al~~~r~a~~l~~~  143 (295)
                      |...+..++.|..+...-+.+|.|+.
T Consensus       272 yA~rv~n~~syd~vSkDiI~RW~YP~  297 (673)
T KOG1461|consen  272 YAARVENLRSYDLVSKDIIQRWTYPL  297 (673)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhcccc
Confidence            77888888888888888888998874

>PRK10191 putative acyl transferase; Provisional

Probab=98.99  E-value=2.5e-09  Score=89.22  Aligned_cols=80  Identities=33%  Similarity=0.498  Sum_probs=58.0

Q ss_pred             ccccceeeEeCCCceecCceEEcCCcCeEECCC-------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCE
Q 039045          155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGET-------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT  227 (295)
Q Consensus       155 ~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~-------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~  227 (295)
                      .+.+..++.|+++++||+++.|+|  +++||+.       ++||++|.|+.++++.+        +++||++++||++++
T Consensus        55 ~I~~g~~i~I~~~~~IGd~~~I~h--~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~--------~v~IG~~~~Igags~  124 (146)
T PRK10191         55 TIHHGYAVVINKNVVAGDDFTIRH--GVTIGNRGADNMACPHIGNGVELGANVIILG--------DITIGNNVTVGAGSV  124 (146)
T ss_pred             EECCCCeEEECCCcEECCCCEECC--CCEECCCCcCCCCCCEECCCcEEcCCCEEeC--------CCEECCCCEECCCCE
Confidence            344445788888888888888888  7888754       57888888888888874        688888888888888


Q ss_pred             ECCCCEECCCCEECCCCE
Q 039045          228 ILGNVKIGEGAKVGAGSV  245 (295)
Q Consensus       228 I~~~v~IG~~~~Igagsv  245 (295)
                      |.+++. ....++|..+.
T Consensus       125 V~~dv~-~~~~v~G~pA~  141 (146)
T PRK10191        125 VLDSVP-DNALVVGEKAR  141 (146)
T ss_pred             ECCccC-CCcEEEccCcE
Confidence            877632 33334444443

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.99  E-value=4.8e-09  Score=102.70  Aligned_cols=74  Identities=24%  Similarity=0.391  Sum_probs=49.1

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      +.|++++.||+++.|++  +++|+++++||++|.|+.+++|+         +++||++|.|+++++| .++.||++|.||
T Consensus       263 ~~i~~~v~ig~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~---------~~~Ig~~~~I~~~~~i-~~~~i~~~~~ig  330 (459)
T PRK14355        263 TYIDRGVVIGRDTTIYP--GVCISGDTRIGEGCTIEQGVVIK---------GCRIGDDVTVKAGSVL-EDSVVGDDVAIG  330 (459)
T ss_pred             eEECCCeEEcCCCEEeC--CcEEeCCCEECCCCEECCCCEEe---------CCEEcCCCEECCCeEE-eCCEECCCCEEC
Confidence            45777777888888877  77777778888888887777775         3566666666666655 344555555554


Q ss_pred             CCCEEc
Q 039045          242 AGSVVL  247 (295)
Q Consensus       242 agsvV~  247 (295)
                      +++.|.
T Consensus       331 ~~~~i~  336 (459)
T PRK14355        331 PMAHLR  336 (459)
T ss_pred             CCCEEC
Confidence            444444

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.97  E-value=4.5e-09  Score=102.38  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=55.4

Q ss_pred             CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCC-CCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045          213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDV-PARATAVGNPARLVGGKEKTSSNEECPGESM  281 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~V-p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~  281 (295)
                      ++.||++|.||+++.+..       +++||++|+||++++|..++ -....++|..+.+.+..+....+.+.|+...
T Consensus       365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~  441 (450)
T PRK14360        365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVI  441 (450)
T ss_pred             CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceee
Confidence            467899999999988743       79999999999999999885 3556777888999988877776677676543

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.97  E-value=5.3e-09  Score=77.14  Aligned_cols=72  Identities=29%  Similarity=0.446  Sum_probs=41.9

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag  243 (295)
                      |++++.|++++.|.   +.+|++++.|++++.|. ++.|+        +++.||++++|. +++|+++++||+++.|+++
T Consensus         2 ig~~~~I~~~~~i~---~s~ig~~~~ig~~~~i~-~s~i~--------~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~   68 (79)
T cd05787           2 IGRGTSIGEGTTIK---NSVIGRNCKIGKNVVID-NSYIW--------DDVTIEDGCTIH-HSIVADGAVIGKGCTIPPG   68 (79)
T ss_pred             ccCCCEECCCCEEe---ccEECCCCEECCCCEEe-CcEEe--------CCCEECCCCEEe-CcEEcCCCEECCCCEECCC
Confidence            56777777777775   35666666666666654 34443        245555555554 5555555555555555555


Q ss_pred             CEEcC
Q 039045          244 SVVLI  248 (295)
Q Consensus       244 svV~~  248 (295)
                      ++|.+
T Consensus        69 ~~v~~   73 (79)
T cd05787          69 SLISF   73 (79)
T ss_pred             CEEeC
Confidence            55543

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=98.96  E-value=4.1e-09  Score=89.54  Aligned_cols=109  Identities=28%  Similarity=0.386  Sum_probs=77.1

Q ss_pred             eecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045          169 KIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSV  245 (295)
Q Consensus       169 ~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igagsv  245 (295)
                      .||+++.|.+  +++|..+   ..||+++.|-+|+.|.....    ..++||++|+||.+|.|-+ |+||++|.||.||+
T Consensus        31 ~Ig~~vsIw~--~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~----~p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmgA~  103 (176)
T COG0663          31 RIGAGVSIWP--GAVLRGDVEPIRIGARTNIQDGVVIHADPG----YPVTIGDDVTIGHGAVVHG-CTIGDNVLIGMGAT  103 (176)
T ss_pred             EECCCCEECC--ceEEEccCCceEECCCceecCCeEEecCCC----CCeEECCCcEEcCccEEEE-eEECCCcEEecCce
Confidence            4555555655  5555544   36788888888888875422    4689999999999999965 99999999999999


Q ss_pred             EcCC-CCCCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045          246 VLID-VPARATAVGNPARLVGG--KEKTSSNEECPGESMDHT  284 (295)
Q Consensus       246 V~~~-Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~  284 (295)
                      |+.+ +-....++|.-|.+-..  .+......+.|++.+.+.
T Consensus       104 vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l  145 (176)
T COG0663         104 VLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPL  145 (176)
T ss_pred             EeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecC
Confidence            9996 23334455666666553  334445567888766554

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.93  E-value=9.1e-09  Score=101.43  Aligned_cols=71  Identities=17%  Similarity=0.298  Sum_probs=54.1

Q ss_pred             CCEECCCCEECCCCEEC-------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCC-CCCCCccccc
Q 039045          213 HPKIGDGVLIGAGATIL-------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSN-EECPGESMDH  283 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~-------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~-~~~p~~~~~~  283 (295)
                      +++||++|.||+++++.       .+++||++|+||.+++|..++. ....++|.-+.+.+..+..... .+.|++.+.+
T Consensus       374 ~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~  453 (482)
T PRK14352        374 DADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEG  453 (482)
T ss_pred             ccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEeccccccccc
Confidence            46888899999998886       3589999999999999998854 4556778888888776655532 3678776654

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=98.93  E-value=5.8e-09  Score=101.39  Aligned_cols=67  Identities=18%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             CEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          214 PKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      +.||++|.||+++++..       +++||++|+||.+++|..++. ....++|.-+.+.+..+......+.|+..
T Consensus       366 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~  440 (451)
T TIGR01173       366 AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQR  440 (451)
T ss_pred             eEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCcee
Confidence            56666677777766643       578888888888888887753 44455666777777766555445555543

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=98.92  E-value=9.7e-09  Score=85.93  Aligned_cols=107  Identities=22%  Similarity=0.321  Sum_probs=64.5

Q ss_pred             ceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          168 AKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS  244 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags  244 (295)
                      +.||+++.|.+  +++|...   ++||++|.|+++++|.+...    .+++||++++|+.++++. +++||++++|++++
T Consensus        18 v~ig~~~~I~~--~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~----~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~   90 (153)
T cd04645          18 VTLGEGSSVWF--GAVLRGDVNPIRIGERTNIQDGSVLHVDPG----YPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGA   90 (153)
T ss_pred             EEECCCcEEcC--CeEEECCCCceEECCCCEECCCcEEecCCC----CCeEEcCCcEECCCcEEe-eeEECCCCEECCCC
Confidence            34444444444  3444332   36777777777777753211    347999999999999985 58999999999999


Q ss_pred             EEcCC--CCCCcEEEccCcEEecC--CCCCCCCCCCCCcccc
Q 039045          245 VVLID--VPARATAVGNPARLVGG--KEKTSSNEECPGESMD  282 (295)
Q Consensus       245 vV~~~--Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~  282 (295)
                      .|..+  +.+++ ++|..+.+...  ......+.+.|+...+
T Consensus        91 ~v~~~~~ig~~~-~ig~~~~v~~~~~i~~~~~~~g~~~~~~~  131 (153)
T cd04645          91 IILDGAVIGKGS-IVAAGSLVPPGKVIPPGSLVAGSPAKVVR  131 (153)
T ss_pred             EEcCCCEECCCC-EECCCCEECCCCEeCCCCEEeCCcchhcc
Confidence            99866  34443 34444444332  1122233355655443

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=98.91  E-value=1e-08  Score=88.85  Aligned_cols=84  Identities=23%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC-----CCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT-----GKASG---DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~-----~~~~~---~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      .+.+++.++||++++|.+  ++.|+++++||+||.|++++.|++.     .....   -.++.||+++.|++++.|..++
T Consensus         9 ~~~~~~~v~ig~~~~I~~--~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~   86 (193)
T cd03353           9 TTYIDGDVEIGVDVVIDP--GVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT   86 (193)
T ss_pred             eEEEcCCeEECCCcEECC--CCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence            445566666666666655  4555555555555555555555431     00000   0134555666666666665556


Q ss_pred             EECCCCEECCCCEE
Q 039045          233 KIGEGAKVGAGSVV  246 (295)
Q Consensus       233 ~IG~~~~IgagsvV  246 (295)
                      .||+++.|+.++.+
T Consensus        87 ~Ig~~~~Ig~~~~i  100 (193)
T cd03353          87 VLGEGVHIGNFVEI  100 (193)
T ss_pred             EECCCCEECCcEEE
Confidence            66666665555444

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=98.91  E-value=1.1e-08  Score=86.34  Aligned_cols=84  Identities=26%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      +.||+++.|+++++|.+  .++||++|.|++++.|..++.|+.......   -.++.|++++.|+.++.+ +++.||+++
T Consensus        18 v~ig~~~~I~~~a~i~~--~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i-~~siIg~~~   94 (163)
T cd05636          18 VWIGEGAIVRSGAYIEG--PVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV-GDSVLGENV   94 (163)
T ss_pred             eEEcCCCEECCCCEEeC--CeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE-ecCEECCCC
Confidence            44555555555555443  444444444444444433333332211110   023455666666666555 456777777


Q ss_pred             EECCCCEEcC
Q 039045          239 KVGAGSVVLI  248 (295)
Q Consensus       239 ~IgagsvV~~  248 (295)
                      .|++++++..
T Consensus        95 ~I~~~~~i~~  104 (163)
T cd05636          95 NLGAGTITAN  104 (163)
T ss_pred             EECCCcEEcc
Confidence            7777777654

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.90  E-value=1.1e-08  Score=80.63  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             CCceecCceEEcCCcCeEEC--CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045          166 PAAKIGKGILFDHATGVVIG--ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       166 ~~a~IG~~v~I~~~~~v~IG--~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag  243 (295)
                      ++..||++++|++  +++|.  +.++||++|.|+++++|......     ....+.      ..+.++++||++|+||++
T Consensus         2 ~~i~iG~~~~I~~--~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~-----~~~~~~------~~~~~~v~Ig~~~~ig~~   68 (107)
T cd05825           2 WNLTIGDNSWIGE--GVWIYNLAPVTIGSDACISQGAYLCTGSHD-----YRSPAF------PLITAPIVIGDGAWVAAE   68 (107)
T ss_pred             ceEEECCCCEECC--CCEEeeCCceEECCCCEECCCeEeecCCCC-----CCcCcc------ceecCCEEECCCCEECCC
Confidence            4677888888877  55553  45778888888888887642211     111111      122344445555555555


Q ss_pred             CEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          244 SVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       244 svV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      ++|.+++- ....++|.-+.+.+..+....+.+.|++.
T Consensus        69 ~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~  106 (107)
T cd05825          69 AFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVP  106 (107)
T ss_pred             CEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence            55544421 22233444555555555555566788764

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.89  E-value=8.3e-09  Score=100.53  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             CCEECCCCEECCCCEEC-------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          213 HPKIGDGVLIGAGATIL-------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~-------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      +++||++|.||+++++.       .+++||++++||++++|.+++. ....++|.-+.+.+..+....+.+.|.....-
T Consensus       358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~  436 (448)
T PRK14357        358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKE  436 (448)
T ss_pred             CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEecc
Confidence            35677777777777653       3688999999999999988764 44456677788887777666666777765443

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=98.88  E-value=4.7e-09  Score=92.69  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=14.7

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL  202 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I  202 (295)
                      |.|+|+||+++.|++  -++||++++||++|.|+++|+|
T Consensus        12 Ie~gA~ig~~V~IGp--f~iIg~~V~ig~~t~l~shvvv   48 (260)
T COG1043          12 IEPGAEIGEDVKIGP--FCIIGPNVEIGDGTVLKSHVVV   48 (260)
T ss_pred             eCCCCCcCCCCEECc--eEEECCCcEECCCcEEcccEEE
Confidence            333344444444433  3333333344444444333333

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=98.88  E-value=1.6e-08  Score=85.59  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             CCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEE-----CCCCE
Q 039045          166 PAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATI-----LGNVK  233 (295)
Q Consensus       166 ~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I-----~~~v~  233 (295)
                      ++..||++++|++  +++|..+   +.||++|.|+++++|.+......    ...++||++++|+.++++     ..++.
T Consensus        20 ~~I~ig~~~~I~~--~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~   97 (161)
T cd03359          20 QNIVLNGKTIIQS--DVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVH   97 (161)
T ss_pred             CCEEECCceEEcC--CCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcE
Confidence            3777888888888  5566654   68999999999999986532221    135689999999999875     44555


Q ss_pred             ECCCCEECCCCEEcCC
Q 039045          234 IGEGAKVGAGSVVLID  249 (295)
Q Consensus       234 IG~~~~IgagsvV~~~  249 (295)
                      ||++++|+.+++|..+
T Consensus        98 Ig~~~~Ig~~~~I~~~  113 (161)
T cd03359          98 IGKNCVIGRRCIIKDC  113 (161)
T ss_pred             ECCCCEEcCCCEECCC
Confidence            5555555555555544

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.88  E-value=1.4e-08  Score=99.27  Aligned_cols=70  Identities=21%  Similarity=0.393  Sum_probs=49.8

Q ss_pred             CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCC-CCCCCcccc
Q 039045          213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSN-EECPGESMD  282 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~-~~~p~~~~~  282 (295)
                      ++.||++|.||+++++..       +++||++|+||.+++|.+.+. ....++|.-+.+.+..+....+ .+.|++...
T Consensus       369 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~~  447 (456)
T PRK09451        369 DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQ  447 (456)
T ss_pred             ccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceecc
Confidence            457888888888887642       488999999999999998853 4455667777777776655543 345666543

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.88  E-value=1.3e-09  Score=88.78  Aligned_cols=56  Identities=29%  Similarity=0.415  Sum_probs=48.6

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE  268 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~  268 (295)
                      ...||..|.+|.|++|+.++++-|.|+|-.++|+.++  ||+++++.|+|+.+.+..+
T Consensus       101 AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P  158 (184)
T KOG3121|consen  101 AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEP  158 (184)
T ss_pred             hhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCc
Confidence            3577888888888888888888888888899988887  8999999999999999654

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.87  E-value=2.6e-08  Score=97.25  Aligned_cols=85  Identities=26%  Similarity=0.325  Sum_probs=52.7

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC-----CCCC--CCCCCEECCCCEECCCCEECCCCE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT-----GKAS--GDRHPKIGDGVLIGAGATILGNVK  233 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~-----~~~~--~~~~~~IG~~v~IGa~a~I~~~v~  233 (295)
                      .+.|++++.||+++.|.+  +++|+.++.||++|.|+++++|.+.     ....  .-.++.||++|.||+++.|.+++.
T Consensus       259 ~~~i~~~~~ig~~~~i~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~  336 (458)
T PRK14354        259 STYIDADVEIGSDTVIEP--GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSV  336 (458)
T ss_pred             eEEECCCcEECCCCEEeC--CeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCE
Confidence            456777777777777766  5555555555555555555544321     1100  012467788888888888877788


Q ss_pred             ECCCCEECCCCEEc
Q 039045          234 IGEGAKVGAGSVVL  247 (295)
Q Consensus       234 IG~~~~IgagsvV~  247 (295)
                      ||++|.|++++.|.
T Consensus       337 Ig~~~~i~~~~~i~  350 (458)
T PRK14354        337 IGEEVKIGNFVEIK  350 (458)
T ss_pred             EeCCcEECCceEEe
Confidence            88888887776664

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.87  E-value=8e-09  Score=95.05  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCEECCCCEECCCCEECCC----CEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          213 HPKIGDGVLIGAGATILGN----VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~----v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ++.||++|.|  ++++.++    |.||++|+||+||.|.-.+.++++ +|.-+.+..
T Consensus       230 ds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA~IGI~IGd~~i-IGAGavVta  283 (341)
T TIGR03536       230 GSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANAGIGIPLGDRCT-VEAGLYITA  283 (341)
T ss_pred             CCEECCCCEE--eEEEeCCCceeEEECCCcEECCCCEEeeEECCCCE-ECCCCEEeC
Confidence            4555555555  4455577    999999999999999433444443 344444443

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.87  E-value=1.9e-08  Score=73.37  Aligned_cols=68  Identities=32%  Similarity=0.401  Sum_probs=57.4

Q ss_pred             EeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccC--------CEECCCCCCCCCCCCEECCCCEECCCCEECCCCEE
Q 039045          163 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHH--------VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI  234 (295)
Q Consensus       163 ~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~g--------v~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~I  234 (295)
                      .|++++.|+++++|.+  .++||+++.|++++.|...        ++|+        ++++||.++.|..+++|..++.|
T Consensus         2 ~ig~~~~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig--------~~~~v~~~~~i~~~~~ig~~~~i   71 (78)
T cd00208           2 FIGEGVKIHPKAVIRG--PVVIGDNVNIGPGAVIGAATGPNEKNPTIIG--------DNVEIGANAVIHGGVKIGDNAVI   71 (78)
T ss_pred             EECCCeEECCCCEEeC--cEEECCCCEECCCCEEEeccCCCccCCcEEC--------CCcEECCCCEEeCCCEECCCCEE
Confidence            4788888888888876  7889999999999888865        7777        37889998999888999999999


Q ss_pred             CCCCEE
Q 039045          235 GEGAKV  240 (295)
Q Consensus       235 G~~~~I  240 (295)
                      +++++|
T Consensus        72 ~~~s~v   77 (78)
T cd00208          72 GAGAVV   77 (78)
T ss_pred             CcCcEe
Confidence            988876

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.86  E-value=2.6e-08  Score=77.92  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=48.2

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC-CCCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS-GDRHPKIGDGVLIGAGATILGNVKIGEGAK  239 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~-~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~  239 (295)
                      .+.|++++.|++++.|..  .+.||+++.||+++.|.++++||...... ...++.|++++.|+.++.| +++.||+++.
T Consensus        11 ~v~ig~~~~I~~~~~i~g--~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~l-g~siIg~~v~   87 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEG--PVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFL-GHSYLGSWCN   87 (101)
T ss_pred             CEEECCCCEECCCCEEeC--CCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEE-eeeEECCCCE
Confidence            366777777777777654  56666666666666555555555322111 0124555555555555555 4667777777


Q ss_pred             ECCCCEE
Q 039045          240 VGAGSVV  246 (295)
Q Consensus       240 IgagsvV  246 (295)
                      ||+++..
T Consensus        88 ig~~~~~   94 (101)
T cd05635          88 LGAGTNN   94 (101)
T ss_pred             ECCCcee
Confidence            7776544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.85  E-value=1.2e-08  Score=99.57  Aligned_cols=86  Identities=24%  Similarity=0.231  Sum_probs=46.1

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECC-----CCCCC---CCCCCEECCCCEECCCCEECC
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-----TGKAS---GDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg-----~~~~~---~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ..++.|++++.|++++.|..  +++|+++++||++|.|++++.|.+     +....   .-.+++||++|.||++++|.+
T Consensus       261 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~  338 (456)
T PRK14356        261 PESVRIGPRATIEPGAEIYG--PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP  338 (456)
T ss_pred             CCcEEECCCcEECCCCEEeC--CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECC
Confidence            34566777777777777765  344444444444444444433321     11100   012456666666666666666


Q ss_pred             CCEECCCCEECCCCEE
Q 039045          231 NVKIGEGAKVGAGSVV  246 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV  246 (295)
                      +++||++|.||.++.+
T Consensus       339 ~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        339 GAVLEEGARVGNFVEM  354 (456)
T ss_pred             CCEECCCCEecCCcee
Confidence            6666666666665544

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.85  E-value=7.1e-08  Score=93.37  Aligned_cols=72  Identities=18%  Similarity=0.286  Sum_probs=53.5

Q ss_pred             CCCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCC-CCCCcccc
Q 039045          212 RHPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNE-ECPGESMD  282 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~-~~p~~~~~  282 (295)
                      .+++||++|.||+++++..       +++||++|+||+++.|...+- ...+++|.-+.+.+..+....+. ..|+..++
T Consensus       341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~  420 (430)
T PRK14359        341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIK  420 (430)
T ss_pred             cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehh
Confidence            4578999999999988864       489999999999999998753 44567777888888776555433 35555544


Q ss_pred             c
Q 039045          283 H  283 (295)
Q Consensus       283 ~  283 (295)
                      +
T Consensus       421 ~  421 (430)
T PRK14359        421 N  421 (430)
T ss_pred             h
Confidence            3

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.81  E-value=3.2e-08  Score=73.84  Aligned_cols=51  Identities=35%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      +.||++|.|+++++|.         +..|++++.|+.++.| .++.|++++.|++++.+..
T Consensus        17 ~~Ig~~~~I~~~~~i~---------~s~i~~~~~ig~~~~l-~~svi~~~~~i~~~~~v~~   67 (81)
T cd04652          17 SVIGANCKIGKRVKIT---------NCVIMDNVTIEDGCTL-ENCIIGNGAVIGEKCKLKD   67 (81)
T ss_pred             cEECCCCEECCCCEEe---------CcEEeCCCEECCCCEE-eccEEeCCCEECCCCEEcc
Confidence            4444555555555553         3456666666666665 5566666666666666643

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.80  E-value=2.9e-08  Score=85.51  Aligned_cols=117  Identities=24%  Similarity=0.317  Sum_probs=82.2

Q ss_pred             eeeEeC-CCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCC-CEECCCCEECCC
Q 039045          160 FAVDIH-PAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAG-ATILGNVKIGEG  237 (295)
Q Consensus       160 ~~v~Ig-~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~-a~I~~~v~IG~~  237 (295)
                      +.+..+ ....+|+.+.+..+..+..+.+.+||+++.++++++|...+.        .++...--.+ ....++++||++
T Consensus        59 ~~~~~~~~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h--------~~~~~~~~~~~~~~~~~v~IG~~  130 (190)
T COG0110          59 VRIDLGEKNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSH--------PGDFVTANIGALVGAGPVTIGED  130 (190)
T ss_pred             EEEecCCcceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCC--------CCChhhcccCCceecCCeEECCC
Confidence            344445 677777777777766666677777788877777777764311        1111111111 444567999999


Q ss_pred             CEECCCCEEcCCC-CCCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          238 AKVGAGSVVLIDV-PARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       238 ~~IgagsvV~~~V-p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      |+||++++|+++| .....++|..+.+.+..+......++|++..+..
T Consensus       131 vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~  178 (190)
T COG0110         131 VWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKR  178 (190)
T ss_pred             eEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEec
Confidence            9999999999995 4777888999999998877777789999865443

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.80  E-value=3e-08  Score=90.86  Aligned_cols=99  Identities=25%  Similarity=0.383  Sum_probs=66.6

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCc-EEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC----C---
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNV-SILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG----N---  231 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v-~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~----~---  231 (295)
                      .++.|.++.++--|++|..  |++|.+.++|..|+ +|+.+ .|.  +..  +++++||++|.|++++.|++    +   
T Consensus       152 ~gVRI~~~~rVRlGAyLGe--GtvVm~~a~VN~nAgtIG~~-iI~--g~I--~HdvvIGd~~~IgpGvsI~G~LsGg~~~  224 (319)
T TIGR03535       152 TGVRIGDADRVRLGAHLAE--GTTVMHEGFVNFNAGTLGAS-MVE--GRI--SAGVVVGDGSDIGGGASIMGTLSGGGKE  224 (319)
T ss_pred             CccEECCCceeeeccEECC--CCEEcCCCEEccCceEecCc-eEE--EEE--ccCCEECCCCEECCCceecceecCCCcc
Confidence            3666666666666666655  56666666666666 45554 332  111  25799999999999999554    8   


Q ss_pred             -CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 -VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 -v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                       |+||++|+||+||.|.-.+.+++ ++|.-+.+++.
T Consensus       225 pV~IGe~~~IGagA~IGI~IGd~~-VVGAGaVVtkg  259 (319)
T TIGR03535       225 VISIGERCLLGANSGLGISLGDDC-VVEAGLYVTAG  259 (319)
T ss_pred             cEEECCCcEECCCCEECeEECCCC-EECCCCEEeCC
Confidence             99999999999999944444544 44555555554

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.3e-08  Score=100.35  Aligned_cols=78  Identities=38%  Similarity=0.529  Sum_probs=35.3

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      +.||.++.||.|+.|.   +.+||.+|.||.||.|     +++|+||++..+   +++.|+++|.|+.||++.+|++||.
T Consensus       334 ~~ig~gT~Ig~g~~I~---NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I---~~aii~d~v~i~~~~~l~~g~vl~~  407 (673)
T KOG1461|consen  334 VVIGAGTKIGSGSKIS---NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRI---DHAIICDDVKIGEGAILKPGSVLGF  407 (673)
T ss_pred             EEecccccccCCCeee---cceecCCCEecCceEEeeeeeecCcEECCCceE---eeeEeecCcEeCCCcccCCCcEEee
Confidence            3444444444444444   4556666666665543     344444433222   2334444444444444444444444


Q ss_pred             CCEECCCCE
Q 039045          237 GAKVGAGSV  245 (295)
Q Consensus       237 ~~~Igagsv  245 (295)
                      ++++|.+-+
T Consensus       408 ~VVv~~~~~  416 (673)
T KOG1461|consen  408 GVVVGRNFV  416 (673)
T ss_pred             eeEeCCCcc
Confidence            444433333

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.77  E-value=6.4e-08  Score=75.71  Aligned_cols=72  Identities=22%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEEC---CCCEECCCCEECCCCEECCC
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG---AGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IG---a~a~I~~~v~IG~~~~Igag  243 (295)
                      .++|++++.|.+  ++.|+..+.||+++.|+++++|++        ++.||++|.||   .+++|.++++|++++.++ +
T Consensus        11 ~v~ig~~~~I~~--~~~i~g~v~IG~~~~Ig~~~~I~~--------~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg-~   79 (101)
T cd05635          11 PIYIGKDAVIEP--FAVIEGPVYIGPGSRVKMGARIYG--------NTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLG-H   79 (101)
T ss_pred             CEEECCCCEECC--CCEEeCCCEECCCCEECCCCEEeC--------cCEECCCCEECCEECccEEcCCCEecCcCEEe-e
Confidence            467888888877  677777788888888888888874        67888888887   566666666666666554 5


Q ss_pred             CEEcCC
Q 039045          244 SVVLID  249 (295)
Q Consensus       244 svV~~~  249 (295)
                      ++|..+
T Consensus        80 siIg~~   85 (101)
T cd05635          80 SYLGSW   85 (101)
T ss_pred             eEECCC
Confidence            555544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=98.77  E-value=5.6e-08  Score=72.37  Aligned_cols=29  Identities=48%  Similarity=0.724  Sum_probs=12.4

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCc
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNV  194 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v  194 (295)
                      |++++.|++++.|.+  +++||++|.||+++
T Consensus         2 i~~~~~I~~~~~i~~--~~~Ig~~~~Ig~~~   30 (80)
T cd05824           2 IDPSAKIGKTAKIGP--NVVIGPNVTIGDGV   30 (80)
T ss_pred             cCCCCEECCCCEECC--CCEECCCCEECCCc
Confidence            344555555444433  33333333333333

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=98.77  E-value=4.2e-08  Score=73.06  Aligned_cols=28  Identities=11%  Similarity=0.208  Sum_probs=13.7

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      +.+++++.|++++.+..+..||+++.|+
T Consensus        52 sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824          52 SIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             CEEeCCCEECCCcEEecCEEECCceEEC
Confidence            4555555555555554444444444443

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=98.76  E-value=6e-08  Score=71.71  Aligned_cols=66  Identities=33%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag  243 (295)
                      |++++.|++++.|.        + ++||++|.|+++++|.         ++.|++++.|++++.| .++.|++++.|+++
T Consensus         2 ig~~~~I~~~~~i~--------~-s~ig~~~~Ig~~~~i~---------~svi~~~~~i~~~~~i-~~svv~~~~~i~~~   62 (79)
T cd03356           2 IGESTVIGENAIIK--------N-SVIGDNVRIGDGVTIT---------NSILMDNVTIGANSVI-VDSIIGDNAVIGEN   62 (79)
T ss_pred             ccCCcEECCCCEEe--------C-CEECCCCEECCCCEEe---------CCEEeCCCEECCCCEE-ECCEECCCCEECCC
Confidence            44555555544443        2 3444444444444443         3455555555555555 24455555555555


Q ss_pred             CEEcC
Q 039045          244 SVVLI  248 (295)
Q Consensus       244 svV~~  248 (295)
                      +.+..
T Consensus        63 ~~i~~   67 (79)
T cd03356          63 VRVVN   67 (79)
T ss_pred             CEEcC
Confidence            55543

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.75  E-value=1.8e-08  Score=90.43  Aligned_cols=86  Identities=28%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCC------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC-----
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGET------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL-----  229 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~-----  229 (295)
                      ++.|.|+++|-.+++|..  ++++...      +.++.+++|-..+++|+        ..+||+||.||.|+.|+     
T Consensus       108 g~RI~p~a~VR~ga~i~~--gtvvM~~sfVNigA~~~~gtMVd~~as~G~--------~a~VGkn~higgGa~I~GVLep  177 (271)
T COG2171         108 GVRIVPGAIVRLGAYIAK--GTVVMPESFVNIGAGTGEGTMVDGRASVGS--------CAQVGKNSHIGGGASIGGVLEP  177 (271)
T ss_pred             ceeecCccEEeeccEECC--CcEEcccceEEECcccCcceEEeeeeeeec--------cEEECCCcccCCcceEeEEecC
Confidence            344555555444444444  3333332      45666667766777764        58999999999999997     


Q ss_pred             ---CCCEECCCCEECCCCEEcCCCC--CCcEE
Q 039045          230 ---GNVKIGEGAKVGAGSVVLIDVP--ARATA  256 (295)
Q Consensus       230 ---~~v~IG~~~~IgagsvV~~~Vp--~~~~v  256 (295)
                         .++.||+||.|||+|++..+|+  +++++
T Consensus       178 ~~a~Pv~IgdncliGAns~~veGV~vGdg~VV  209 (271)
T COG2171         178 LQANPVIIGDNCLIGANSEVVEGVIVGDGCVV  209 (271)
T ss_pred             CCCCCeEECCccEeccccceEeeeEeCCCcEE
Confidence               4799999999999998888864  55554

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.75  E-value=9.4e-08  Score=70.36  Aligned_cols=64  Identities=34%  Similarity=0.561  Sum_probs=28.2

Q ss_pred             ecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          170 IGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       170 IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ||++++|+.  ++.|. ++.|+++|.|+++++|.         ++.|++++.|++++.|. ++.|++++.|+.++.+
T Consensus         2 ig~~~~I~~--~~~i~-~s~ig~~~~ig~~~~i~---------~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i   65 (79)
T cd05787           2 IGRGTSIGE--GTTIK-NSVIGRNCKIGKNVVID---------NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTI   65 (79)
T ss_pred             ccCCCEECC--CCEEe-ccEECCCCEECCCCEEe---------CcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEE
Confidence            344444444  33333 24444444444444442         23444444444444442 4444444444444444

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.73  E-value=8.9e-08  Score=71.44  Aligned_cols=30  Identities=33%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag  243 (295)
                      ++.|++++.|++++.+ .++.||+++.|+++
T Consensus        50 ~svi~~~~~i~~~~~v-~~~ii~~~~~i~~~   79 (81)
T cd04652          50 NCIIGNGAVIGEKCKL-KDCLVGSGYRVEAG   79 (81)
T ss_pred             ccEEeCCCEECCCCEE-ccCEECCCcEeCCC
Confidence            4566777777777666 45666666666555

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=98.71  E-value=1.3e-07  Score=69.83  Aligned_cols=69  Identities=25%  Similarity=0.355  Sum_probs=41.7

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCc-----EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETA-----VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~-----~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      ++.|++++.|++ +.|++  ++.||+++     +|++++.|++++.|.         ++.|++++.|++++.+..++.||
T Consensus         5 ~~~I~~~~~i~~-s~ig~--~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------~svv~~~~~i~~~~~i~~~~~ig   72 (79)
T cd03356           5 STVIGENAIIKN-SVIGD--NVRIGDGVTITNSILMDNVTIGANSVIV---------DSIIGDNAVIGENVRVVNLCIIG   72 (79)
T ss_pred             CcEECCCCEEeC-CEECC--CCEECCCCEEeCCEEeCCCEECCCCEEE---------CCEECCCCEECCCCEEcCCeEEC
Confidence            344555555544 44544  44444444     445555555555553         46788888888888777667777


Q ss_pred             CCCEEC
Q 039045          236 EGAKVG  241 (295)
Q Consensus       236 ~~~~Ig  241 (295)
                      +++.|+
T Consensus        73 ~~~~i~   78 (79)
T cd03356          73 DDVVVE   78 (79)
T ss_pred             CCeEEC
Confidence            777765

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.70  E-value=1.6e-07  Score=73.31  Aligned_cols=80  Identities=30%  Similarity=0.372  Sum_probs=52.8

Q ss_pred             CceecCceEEcCCcCeEECC--CcEEcCCcEEccCCEECCCCCCCCCC-----CCEECCCCEECCCCEECCCCEECCCCE
Q 039045          167 AAKIGKGILFDHATGVVIGE--TAVIGNNVSILHHVTLGGTGKASGDR-----HPKIGDGVLIGAGATILGNVKIGEGAK  239 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~--~~~IG~~v~I~~gv~Igg~~~~~~~~-----~~~IG~~v~IGa~a~I~~~v~IG~~~~  239 (295)
                      ++.||++++|.+  ++.|..  ++.||++|.|++++.|..........     +..+..++.||.++.|..++.|++++.
T Consensus         1 ~v~Ig~~~~I~~--~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~   78 (109)
T cd04647           1 NISIGDNVYIGP--GCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT   78 (109)
T ss_pred             CeEECCCcEECC--CCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCE
Confidence            367999999988  777777  89999999999999998652211111     123355556666666666666666666


Q ss_pred             ECCCCEEcC
Q 039045          240 VGAGSVVLI  248 (295)
Q Consensus       240 IgagsvV~~  248 (295)
                      |+.++++..
T Consensus        79 ig~~~~i~~   87 (109)
T cd04647          79 IGDGAVVGA   87 (109)
T ss_pred             ECCCCEECC
Confidence            666655543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=98.70  E-value=8.8e-08  Score=75.16  Aligned_cols=53  Identities=23%  Similarity=0.171  Sum_probs=43.3

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV  250 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V  250 (295)
                      +.|+++|.|+.++.|.         +..|++++.||.++.+ .++.||+++.|+++++|.++.
T Consensus        29 svi~~~~~Ig~~~~I~---------~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~~~~   81 (104)
T cd04651          29 SVLFRGVRVGSGSVVE---------DSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIGGDP   81 (104)
T ss_pred             CEEeCCCEECCCCEEE---------EeEEcCCCEECCCCEE-EeEEECCCCEECCCCEECCCc
Confidence            5566666666666664         5789999999999998 689999999999999999884

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.68  E-value=1.5e-07  Score=73.08  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=18.4

Q ss_pred             ECCCCEECCCCE--ECCCCEECCCCEECCCCEEcCC
Q 039045          216 IGDGVLIGAGAT--ILGNVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       216 IG~~v~IGa~a~--I~~~v~IG~~~~IgagsvV~~~  249 (295)
                      |++++.|+.++.  +.+++.||++|+|+.++.+...
T Consensus        37 i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~   72 (101)
T cd03354          37 IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN   72 (101)
T ss_pred             EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc
Confidence            333334443333  2455567777777777666654

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.67  E-value=7.8e-08  Score=94.93  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=27.2

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||+++.||+++.|..++.||++|.|++++.|
T Consensus       322 ~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i  355 (481)
T PRK14358        322 GAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET  355 (481)
T ss_pred             CCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence            4688888888888888888888888888885554

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.58  E-value=6.4e-07  Score=74.63  Aligned_cols=116  Identities=17%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             ceecCceEEcCCcCeEEC-CCcEEcCCcEEccCCEECCC-CCCCC--CC-CCEECCCCE----ECCCCEECCCCEECCCC
Q 039045          168 AKIGKGILFDHATGVVIG-ETAVIGNNVSILHHVTLGGT-GKASG--DR-HPKIGDGVL----IGAGATILGNVKIGEGA  238 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG-~~~~IG~~v~I~~gv~Igg~-~~~~~--~~-~~~IG~~v~----IGa~a~I~~~v~IG~~~  238 (295)
                      ..||++++|+.+ ...++ ..+.||++|.|+++++|... .....  .. .-.++++.+    ......+..+++||++|
T Consensus         2 ~~iG~~s~i~~~-~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~   80 (145)
T cd03349           2 ISVGDYSYGSGP-DCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV   80 (145)
T ss_pred             EEEeCceeeCCC-CceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence            578999999764 33444 48999999999999999865 22110  00 111222211    11122233456666666


Q ss_pred             EECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          239 KVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       239 ~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +||++++|..++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus        81 ~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~  127 (145)
T cd03349          81 WIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYR  127 (145)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhh
Confidence            6666666655532 333445555666666666666678898887654

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.51  E-value=5.3e-07  Score=85.28  Aligned_cols=14  Identities=21%  Similarity=0.404  Sum_probs=6.8

Q ss_pred             EeCCCceecCceEE
Q 039045          163 DIHPAAKIGKGILF  176 (295)
Q Consensus       163 ~Ig~~a~IG~~v~I  176 (295)
                      .+.+.+.||+++.|
T Consensus       250 ~i~~~~~i~~~~~i  263 (353)
T TIGR01208       250 KIRGRVVVGEGAKI  263 (353)
T ss_pred             EEcCCEEECCCCEE
Confidence            34444455555555

Alternate name: dTDP-D-glucose synthase

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.50  E-value=4.1e-07  Score=87.94  Aligned_cols=71  Identities=21%  Similarity=0.383  Sum_probs=54.0

Q ss_pred             CCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          165 HPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS  244 (295)
Q Consensus       165 g~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags  244 (295)
                      .+++.||++|.|.   +++|. +++||++|.|+.+++|.         ++.|+++|.||++|+| .++.|+++|+|++++
T Consensus       313 ~~~~~ig~~~~I~---~~~i~-~svIg~~~~I~~~~~i~---------~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~  378 (407)
T PRK00844        313 AQDSLVSAGSIIS---GATVR-NSVLSPNVVVESGAEVE---------DSVLMDGVRIGRGAVV-RRAILDKNVVVPPGA  378 (407)
T ss_pred             EEeCEEcCCCEEC---CeeeE-cCEECCCCEECCCCEEe---------eeEECCCCEECCCCEE-EeeEECCCCEECCCC
Confidence            3456667777764   35554 47788888888888875         4688999999999888 678889999999998


Q ss_pred             EEcCC
Q 039045          245 VVLID  249 (295)
Q Consensus       245 vV~~~  249 (295)
                      +|..+
T Consensus       379 ~i~~~  383 (407)
T PRK00844        379 TIGVD  383 (407)
T ss_pred             EECCC
Confidence            88775

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.49  E-value=1.2e-07  Score=59.28  Aligned_cols=33  Identities=45%  Similarity=0.814  Sum_probs=24.9

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      ++||++|+||+++.|  +++||++|.|++|++|++
T Consensus         2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            589999999999998  699999999999999874

...

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.44  E-value=8.9e-07  Score=84.53  Aligned_cols=74  Identities=26%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             eEeCCCceecCceEEcCCcCeEECC---CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGE---TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~---~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      +.|++++.|+ ++.|++  +++|+.   +++||++|.|+++++|.         +++|+++|.||+++.| .+++||++|
T Consensus       283 ~~i~~~~~i~-~~~Ig~--~~~I~~~v~~s~ig~~~~I~~~~~i~---------~svi~~~~~i~~~~~i-~~~ii~~~~  349 (380)
T PRK05293        283 QYIAENAKVK-NSLVVE--GCVVYGTVEHSVLFQGVQVGEGSVVK---------DSVIMPGAKIGENVVI-ERAIIGENA  349 (380)
T ss_pred             CEECCCCEEe-cCEECC--CCEEcceecceEEcCCCEECCCCEEE---------CCEEeCCCEECCCeEE-eEEEECCCC
Confidence            4455555542 334444  344332   34566666666666653         5688888888888877 557788888


Q ss_pred             EECCCCEEcC
Q 039045          239 KVGAGSVVLI  248 (295)
Q Consensus       239 ~IgagsvV~~  248 (295)
                      .|++++.+..
T Consensus       350 ~i~~~~~i~~  359 (380)
T PRK05293        350 VIGDGVIIGG  359 (380)
T ss_pred             EECCCCEEcC
Confidence            8888777754

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.40  E-value=1.2e-06  Score=82.94  Aligned_cols=51  Identities=33%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~  247 (295)
                      +++||++|.|+++|+|.         ++.|++++.||.++.| .+++||+++.|+++++|.
T Consensus       310 ~s~i~~~~~I~~~~~i~---------~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       310 HSVLGIRVRIGSGSTVE---------DSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             ccEECCCCEECCCCEEe---------eeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence            34444444444444442         5778888888888777 677888888888877764

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.38  E-value=1.2e-06  Score=85.54  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG  204 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg  204 (295)
                      ..|+++|+|+ ++.|.   +.+||++|.||++|.|.+++.+|.
T Consensus       316 s~I~~~~~I~-~~~I~---~svI~~~~~Ig~~~~I~~sii~g~  354 (436)
T PLN02241        316 SIISHGCFLR-ECKIE---HSVVGLRSRIGEGVEIEDTVMMGA  354 (436)
T ss_pred             eEEcCCcEEc-CeEEE---eeEEcCCCEECCCCEEEEeEEECC
Confidence            4577777777 77775   357888888888888777776663

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=98.37  E-value=7.4e-07  Score=84.91  Aligned_cols=101  Identities=24%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             HHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCE
Q 039045          136 VAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK  215 (295)
Q Consensus       136 ~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~  215 (295)
                      .++..|++.+....+.-+..+..+..++|..++.||.++.|++  +++|..+++||++|.||+++.|-         +++
T Consensus       237 ~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p--~v~l~G~t~ig~~v~iGpg~~i~---------ds~  305 (460)
T COG1207         237 EAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEP--NVILEGNTVIGDNVVIGPGSVIK---------DSV  305 (460)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEec--CcEEeeeEEECCceEECCCcEEE---------eeE
Confidence            3455666655555566677788888999999999999999999  88888888899999998887774         456


Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       216 IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      ||+|+.|-+.++| ++++||++|.||+-+.+.+
T Consensus       306 I~~~a~I~~~S~i-e~s~vg~~~~VGPfA~LRP  337 (460)
T COG1207         306 IGDNAVIKAYSVI-EGSTVGEGATVGPFARLRP  337 (460)
T ss_pred             EcCCCEEEeccee-eccEecCCcccCCccccCC
Confidence            6666665554444 3444444444444444443

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=2.6e-06  Score=81.09  Aligned_cols=69  Identities=39%  Similarity=0.570  Sum_probs=52.1

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG  241 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig  241 (295)
                      +.|-..+.||+++.|+.  ++.|+++++||+||.|++++.|.         +..|.++|.|+.++.| .++.||++|.||
T Consensus       256 ~~i~gp~~ig~~~~i~~--~~~i~~~~~ig~~~~I~~~~~i~---------~Sii~~~~~i~~~~~i-~~sIi~~~~~ig  323 (358)
T COG1208         256 AYIIGPVVIGPGAKIGP--GALIGPYTVIGEGVTIGNGVEIK---------NSIIMDNVVIGHGSYI-GDSIIGENCKIG  323 (358)
T ss_pred             ceEeCCEEECCCCEECC--CCEECCCcEECCCCEECCCcEEE---------eeEEEcCCEECCCCEE-eeeEEcCCcEEC
Confidence            44566667777777766  67777777777777777777774         5788888888888888 677788888888


Q ss_pred             C
Q 039045          242 A  242 (295)
Q Consensus       242 a  242 (295)
                      +
T Consensus       324 ~  324 (358)
T COG1208         324 A  324 (358)
T ss_pred             C
Confidence            7

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.31  E-value=2.3e-06  Score=80.94  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG  203 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Ig  203 (295)
                      .+.|++++.| .+++|..  +++||++|.|+ ++.|+++++||
T Consensus       254 ~~~i~~~~~i-~~~~i~~--~~~Ig~~~~I~-~~~i~~~~~Ig  292 (353)
T TIGR01208       254 RVVVGEGAKI-VNSVIRG--PAVIGEDCIIE-NSYIGPYTSIG  292 (353)
T ss_pred             CEEECCCCEE-eCCEEEC--CcEECCCCEEc-CcEECCCCEEC
Confidence            3556666666 4555544  45555555543 33344444443

Alternate name: dTDP-D-glucose synthase

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.28  E-value=2.6e-06  Score=81.02  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      ++.|+++|.|++++.+ .++.||++++||+++.+..
T Consensus       321 ~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       321 NCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             eeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeCC
Confidence            4566677777776666 4566677777776666643

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.26  E-value=2.1e-06  Score=79.32  Aligned_cols=80  Identities=26%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC--CCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG--DRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~--~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      ++-+.+.+.+|++|.|++  +++||.+++|+++|.|.+.+.+++..-..+  .+...+|-++.||-++.|-.+++||+++
T Consensus       264 nvlvd~~~~iG~~C~Ig~--~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV  341 (371)
T KOG1322|consen  264 NVLVDSIASIGENCSIGP--NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV  341 (371)
T ss_pred             cEeeccccccCCccEECC--CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence            456788888888888888  788888888888888877776664321111  1223444455555555444444444444


Q ss_pred             EECC
Q 039045          239 KVGA  242 (295)
Q Consensus       239 ~Iga  242 (295)
                      +|..
T Consensus       342 ~V~d  345 (371)
T KOG1322|consen  342 IVAD  345 (371)
T ss_pred             EEec
Confidence            4433

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.25  E-value=4.2e-07  Score=57.17  Aligned_cols=34  Identities=44%  Similarity=0.692  Sum_probs=28.6

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~  247 (295)
                      ++||++|+|++++.|.++++||++|+|+++++|.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            6788888888999988999999999999888875

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.24  E-value=2.9e-06  Score=82.53  Aligned_cols=69  Identities=17%  Similarity=0.278  Sum_probs=54.9

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||++|.| .  ++.|. +++|+++|.|+.++.|.         ++.|+++|.||.+|.| .++.||++|.|+++++|
T Consensus       327 ~s~i~~~~~i-~--~~~i~-~svi~~~~~I~~~~~i~---------~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i  392 (425)
T PRK00725        327 NSLVSGGCII-S--GAVVR-RSVLFSRVRVNSFSNVE---------DSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVI  392 (425)
T ss_pred             eCEEcCCcEE-c--Ccccc-CCEECCCCEECCCCEEe---------eeEEcCCCEECCCCEE-eeEEECCCCEECCCCEE
Confidence            5677777777 4  56665 57888888888888884         6789999999999888 67889999999998888


Q ss_pred             cCC
Q 039045          247 LID  249 (295)
Q Consensus       247 ~~~  249 (295)
                      ..+
T Consensus       393 ~~~  395 (425)
T PRK00725        393 GED  395 (425)
T ss_pred             CCC
Confidence            755

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.22  E-value=1.8e-06  Score=70.71  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=57.8

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEEC-----------CCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG-----------AGATI  228 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IG-----------a~a~I  228 (295)
                      ++.+...+.+.+|++|... .++.+|.+|+++.++.|.+.-.+-..+..-  -+..|||+|+|+           +.+.+
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~af--fp~hiGdhVFieE~cVVnAAqIgsyVh~  110 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAF--FPVHIGDHVFIEEECVVNAAQIGSYVHL  110 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCcee--eeeeecceEEEecceEeehhhheeeeEe
Confidence            5667777778888888642 578888888888888887644332221110  123445544444           44455


Q ss_pred             CCCCEECCCCEECCCCEEcCC--CCCCcEE
Q 039045          229 LGNVKIGEGAKVGAGSVVLID--VPARATA  256 (295)
Q Consensus       229 ~~~v~IG~~~~IgagsvV~~~--Vp~~~~v  256 (295)
                      +.+++||.+|++-..++|..|  +|+.+++
T Consensus       111 GknaviGrrCVlkdCc~ild~tVlPpet~v  140 (184)
T KOG3121|consen  111 GKNAVIGRRCVLKDCCRILDDTVLPPETLV  140 (184)
T ss_pred             ccceeEcCceEhhhheeccCCcccCccccc
Confidence            566666666666666666666  5665543

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=98.19  E-value=7.2e-06  Score=64.27  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=12.3

Q ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       215 ~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      .|+++|.|++++.| .++.|++++.||.++.+
T Consensus        30 vi~~~~~Ig~~~~I-~~siI~~~~~Ig~~~~i   60 (104)
T cd04651          30 VLFRGVRVGSGSVV-EDSVIMPNVGIGRNAVI   60 (104)
T ss_pred             EEeCCCEECCCCEE-EEeEEcCCCEECCCCEE
Confidence            34444444444433 23334444444443333

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.17  E-value=5.2e-06  Score=81.02  Aligned_cols=67  Identities=27%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             ceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECC---------------C---CEECCCCEEC
Q 039045          168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGD---------------G---VLIGAGATIL  229 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~---------------~---v~IGa~a~I~  229 (295)
                      +.|+++|.|.   +++|+ +++|+++|.|+.+|+|..+        +.+|.               +   +.||.+|+|.
T Consensus       316 s~I~~~~~I~---~~~I~-~svI~~~~~Ig~~~~I~~s--------ii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~  383 (436)
T PLN02241        316 SIISHGCFLR---ECKIE-HSVVGLRSRIGEGVEIEDT--------VMMGADYYETEEEIASLLAEGKVPIGIGENTKIR  383 (436)
T ss_pred             eEEcCCcEEc---CeEEE-eeEEcCCCEECCCCEEEEe--------EEECCCccccccccccccccCCcceEECCCCEEc
Confidence            6788888885   56775 5899999999999999753        33331               2   2566666663


Q ss_pred             CCCEECCCCEECCCCEEc
Q 039045          230 GNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~  247 (295)
                       +++|+++|+||+++++.
T Consensus       384 -~~vI~~~v~Ig~~~~i~  400 (436)
T PLN02241        384 -NAIIDKNARIGKNVVII  400 (436)
T ss_pred             -ceEecCCCEECCCcEEe
Confidence             56666666666666665

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.12  E-value=9.4e-06  Score=66.98  Aligned_cols=100  Identities=23%  Similarity=0.329  Sum_probs=68.2

Q ss_pred             eEeCCCceecCceEEc-CCcCeEECCCcEEcCCcEEcc----CC---------EECCCCC---CCCCCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFD-HATGVVIGETAVIGNNVSILH----HV---------TLGGTGK---ASGDRHPKIGDGVLIGA  224 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~-~~~~v~IG~~~~IG~~v~I~~----gv---------~Igg~~~---~~~~~~~~IG~~v~IGa  224 (295)
                      +.|++++.+.+.+.+. ....++||+++.|++..+|.+    |+         .||....   ......-++||+..|++
T Consensus        27 vti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVies  106 (190)
T KOG4042|consen   27 VTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIES  106 (190)
T ss_pred             eEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEee
Confidence            4445555554444333 234678888887777766543    22         2222110   00112358999999999


Q ss_pred             CCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCc
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPA  261 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA  261 (295)
                      .+.++.||.+-++|.|||++.|-.  .+|+++.+.|.-.
T Consensus       107 kayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~  145 (190)
T KOG4042|consen  107 KAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATN  145 (190)
T ss_pred             eeEecCCcEEcCCceeccceEEecccccCCcceEEcccc
Confidence            999999999999999999999985  4899999999654

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.12  E-value=9.3e-06  Score=77.51  Aligned_cols=63  Identities=27%  Similarity=0.382  Sum_probs=38.7

Q ss_pred             CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045          181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV  250 (295)
Q Consensus       181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V  250 (295)
                      .+.|++++.|+ ++.|+++|+|++.     ..++.||++|.||++|+| .+++|+++|.||++++|...+
T Consensus       282 ~~~i~~~~~i~-~~~Ig~~~~I~~~-----v~~s~ig~~~~I~~~~~i-~~svi~~~~~i~~~~~i~~~i  344 (380)
T PRK05293        282 PQYIAENAKVK-NSLVVEGCVVYGT-----VEHSVLFQGVQVGEGSVV-KDSVIMPGAKIGENVVIERAI  344 (380)
T ss_pred             CCEECCCCEEe-cCEECCCCEEcce-----ecceEEcCCCEECCCCEE-ECCEEeCCCEECCCeEEeEEE
Confidence            34444444442 4455555555421     125788888888888877 567777777777777766543

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=1.6e-05  Score=75.70  Aligned_cols=78  Identities=40%  Similarity=0.558  Sum_probs=48.8

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEE
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI  234 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~I  234 (295)
                      -.+.|++++.||.++.|..  .++||++|.||+++.|     .+++.|+.....   .+..||++|.||++. .     |
T Consensus       260 gp~~ig~~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i---~~sIi~~~~~ig~~~-~-----i  328 (358)
T COG1208         260 GPVVIGPGAKIGPGALIGP--YTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI---GDSIIGENCKIGASL-I-----I  328 (358)
T ss_pred             CCEEECCCCEECCCCEECC--CcEECCCCEECCCcEEEeeEEEcCCEECCCCEE---eeeEEcCCcEECCce-e-----e
Confidence            3577888888888888877  7777777777766543     334444432222   256788888888722 2     5


Q ss_pred             CCCCEECCCCEEcCC
Q 039045          235 GEGAKVGAGSVVLID  249 (295)
Q Consensus       235 G~~~~IgagsvV~~~  249 (295)
                      |+ +.+|.++.+.++
T Consensus       329 ~d-~~~g~~~~i~~g  342 (358)
T COG1208         329 GD-VVIGINSEILPG  342 (358)
T ss_pred             cc-eEecCceEEcCc
Confidence            55 666665555555

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=6.2e-06  Score=77.61  Aligned_cols=51  Identities=37%  Similarity=0.590  Sum_probs=34.6

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      ++||.||.||..++|-         +..|-+||.||.||.| +|+.||.++.||.||.+..
T Consensus       352 SviG~nC~Ig~~~~v~---------nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~n  402 (433)
T KOG1462|consen  352 SVIGSNCDIGERVKVA---------NSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLKN  402 (433)
T ss_pred             eeecCCccccCCcEEE---------eeEeecCcEecCCcce-ecceecccceecCCCeeee
Confidence            4566666666666664         4567777777777766 6777777777777777664

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.08  E-value=1.5e-05  Score=77.54  Aligned_cols=53  Identities=9%  Similarity=0.089  Sum_probs=30.5

Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV  250 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V  250 (295)
                      +++||++|.| .++.|.         ++.||++|.||.+|.| .+++|+++|.||.++.|...+
T Consensus       327 ~s~i~~~~~i-~~~~i~---------~svi~~~~~I~~~~~i-~~svi~~~~~I~~~~~i~~~i  379 (425)
T PRK00725        327 NSLVSGGCII-SGAVVR---------RSVLFSRVRVNSFSNV-EDSVLLPDVNVGRSCRLRRCV  379 (425)
T ss_pred             eCEEcCCcEE-cCcccc---------CCEECCCCEECCCCEE-eeeEEcCCCEECCCCEEeeEE
Confidence            4555556555 455553         3566666666666666 455566666666666555443

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.06  E-value=1.3e-05  Score=77.45  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             ECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEE
Q 039045          184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL  263 (295)
Q Consensus       184 IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~  263 (295)
                      +..++.||++|.|+ +++|.         ++.||++|.|+++|.|. ++.|+++|.||.+++|...+-...+.+|..+++
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~---------~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i  380 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVR---------NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI  380 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeE---------cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence            34456777777776 66664         46888888888888884 677888888888888877655444555666666


Q ss_pred             ec
Q 039045          264 VG  265 (295)
Q Consensus       264 i~  265 (295)
                      .+
T Consensus       381 ~~  382 (407)
T PRK00844        381 GV  382 (407)
T ss_pred             CC
Confidence            54

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.05  E-value=3e-05  Score=73.46  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~  247 (295)
                      ++.||++|.|+.+|+| .++.|++++.||.++.|.
T Consensus       310 ~s~i~~~~~I~~~~~i-~~sii~~~~~v~~~~~l~  343 (361)
T TIGR02091       310 HSVLGIRVRIGSGSTV-EDSVIMGDVGIGRGAVIR  343 (361)
T ss_pred             ccEECCCCEECCCCEE-eeeEEeCCCEECCCCEEe
Confidence            3455555666555555 355555555555555554

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=2e-05  Score=74.30  Aligned_cols=74  Identities=28%  Similarity=0.443  Sum_probs=43.0

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      ...++++++|++++.|.   .-+||.+|.||+.|.|     .+|++||.+...   .++.||.++.||+|+++ .||.||
T Consensus       334 d~iv~~~t~i~~~s~ik---~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I---ensIIg~gA~Ig~gs~L-~nC~Ig  406 (433)
T KOG1462|consen  334 DSIVGDNTQIGENSNIK---RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI---ENSIIGMGAQIGSGSKL-KNCIIG  406 (433)
T ss_pred             hhccCCCceecccceee---eeeecCCccccCCcEEEeeEeecCcEecCCcce---ecceecccceecCCCee-eeeEec
Confidence            34577777777777666   3577888877776644     345555543322   24566666666666666 344444


Q ss_pred             CCCEEC
Q 039045          236 EGAKVG  241 (295)
Q Consensus       236 ~~~~Ig  241 (295)
                      .+=+|.
T Consensus       407 ~~yvVe  412 (433)
T KOG1462|consen  407 PGYVVE  412 (433)
T ss_pred             CCcEEc
Confidence            433333

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.95  E-value=4.2e-05  Score=74.55  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=14.4

Q ss_pred             ceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045          168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL  202 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I  202 (295)
                      +.||++|.| .  ++.|+ +++||++|.|+.+++|
T Consensus       309 ~~ig~~~~i-~--~~~i~-~svi~~~~~Ig~~~~i  339 (429)
T PRK02862        309 SIIAEGCII-K--NCSIH-HSVLGIRSRIESGCTI  339 (429)
T ss_pred             CEECCCCEE-C--CcEEE-EEEEeCCcEECCCCEE
Confidence            445555555 2  33333 2445555555554444

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.85  E-value=8.6e-05  Score=70.62  Aligned_cols=114  Identities=18%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             hhcccchhhH----HHHHHHHHHHHhcCChhHHHHHhhcccc-----ceeeEeC-----CCceecCceEEcCCcCeEECC
Q 039045          121 CLLNYKGFLA----CQAHRVAHKLWTQSRRPLALALQSRISD-----VFAVDIH-----PAAKIGKGILFDHATGVVIGE  186 (295)
Q Consensus       121 ~~~~~~gf~a----l~~~r~a~~l~~~~~~~~~~~~~~~~~~-----~~~v~Ig-----~~a~IG~~v~I~~~~~v~IG~  186 (295)
                      ..+.|.|||.    +..|.-++.-..+..+.+..+-+.+-..     .....+.     .++.|+.||+|.   | ++- 
T Consensus       236 ~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~---G-~V~-  310 (393)
T COG0448         236 YAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIIS---G-TVE-  310 (393)
T ss_pred             EEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEE---e-EEE-
Confidence            3345678886    6666666665544333322221111100     0111121     233455555554   2 222 


Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~  249 (295)
                      +++|+.+|.|+.+++|.         ++.|-.+|.||.||+| .++.|..+|+|+.|.+|..+
T Consensus       311 nSVL~~~v~I~~gs~i~---------~svim~~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         311 NSVLFRGVRIGKGSVIE---------NSVIMPDVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             eeEEecCeEECCCCEEE---------eeEEeCCcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence            35667777777777764         4667777777777766 56666666666666666654

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=97.85  E-value=1.2e-05  Score=74.50  Aligned_cols=84  Identities=26%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      .-|.+.|-.++.++.  -+.+|++|.||.|++||.+++|+.+.....   -+...++++++| +.+.++.+++||.+++|
T Consensus       255 ~~p~~~i~~nvlvd~--~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~~~~IG~~~~i  331 (371)
T KOG1322|consen  255 LLPGSKIVGNVLVDS--IASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEI-SSSIVGWNVPIGIWARI  331 (371)
T ss_pred             ccCCccccccEeecc--ccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHH-HhhhccccccccCceEE
Confidence            344566777777766  566666666666666666666654322210   012244444443 33455667777777777


Q ss_pred             CCCCEEcCCC
Q 039045          241 GAGSVVLIDV  250 (295)
Q Consensus       241 gagsvV~~~V  250 (295)
                      ..++++.+||
T Consensus       332 d~~a~lG~nV  341 (371)
T KOG1322|consen  332 DKNAVLGKNV  341 (371)
T ss_pred             ecccEeccce
Confidence            7777777764

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=3.7e-05  Score=70.40  Aligned_cols=56  Identities=32%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045          182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~  247 (295)
                      ..||+|+.||.++.||+|+.|         +.+.|-++|.|..|++|+ ++.||-+|.||--+.|-
T Consensus       301 AkiGPNVSIga~vrvg~GvRl---------~~sIIl~d~ei~enavVl-~sIigw~s~iGrWaRVe  356 (407)
T KOG1460|consen  301 AKIGPNVSIGANVRVGPGVRL---------RESIILDDAEIEENAVVL-HSIIGWKSSIGRWARVE  356 (407)
T ss_pred             cccCCCceecCCceecCCcee---------eeeeeccCcEeeccceEE-eeeecccccccceeeec
Confidence            344445555555555555555         367888899999998886 56688888888666665

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=97.75  E-value=8.9e-05  Score=70.53  Aligned_cols=50  Identities=18%  Similarity=0.290  Sum_probs=33.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEE
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL  263 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~  263 (295)
                      ++.||++|.|+.||.| .++.|+++|.|++++.+...+-....++|.-+++
T Consensus       304 ~s~i~~~~~I~~~~~i-~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       304 NSILSRGVHVGKDALI-KNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CCEECCCCEECCCCEE-EeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence            5678888888888877 6667777777777777766544444444544444

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.72  E-value=3.5e-05  Score=48.26  Aligned_cols=16  Identities=38%  Similarity=0.370  Sum_probs=5.7

Q ss_pred             CCcEEcCCcEEccCCE
Q 039045          186 ETAVIGNNVSILHHVT  201 (295)
Q Consensus       186 ~~~~IG~~v~I~~gv~  201 (295)
                      +++.||++|.|+++++
T Consensus        18 ~~~~Ig~~~~I~~~~~   33 (36)
T PF00132_consen   18 GGVVIGDNCVIGPGVV   33 (36)
T ss_dssp             TTEEE-TTEEEETTEE
T ss_pred             CCCEECCCCEEcCCCE
Confidence            3333333333333333

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.71  E-value=3.9e-05  Score=47.88  Aligned_cols=15  Identities=67%  Similarity=1.094  Sum_probs=8.4

Q ss_pred             CEECCCCEECCCCEE
Q 039045          214 PKIGDGVLIGAGATI  228 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I  228 (295)
                      ++|||+|.|++|++|
T Consensus        18 i~igd~~~i~~g~~I   32 (34)
T PF14602_consen   18 ITIGDGVIIGAGVVI   32 (34)
T ss_dssp             SEE-TTEEE-TTEEE
T ss_pred             CEEcCCCEECCCCEE
Confidence            466666666666665

...

>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria []

Probab=97.67  E-value=3.1e-06  Score=66.70  Aligned_cols=56  Identities=21%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             CCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHH
Q 039045           10 SPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLA   66 (295)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~   66 (295)
                      +++..+.+.+.+.....+.|.+.++.|+++++++||++.++++ .+|++|||++.++
T Consensus        50 ~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av~~RDPA~~~~~~-~lL~~kGF~AlQa  105 (105)
T PF06426_consen   50 LSADQLRDLFRDALEADPEIVEAARADLQAVYERDPACPSYLE-PLLFFKGFHALQA  105 (105)
T ss_dssp             S-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSTT--STHH-HHHH-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCccccchhH-HHHHCccHHHhcC
Confidence            4555577777888888899999999999999999999999887 4999999999874

; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.63  E-value=0.00011  Score=71.76  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC----------CCCCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA----------SGDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~----------~~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ++.|++++.| +++.|.+   .+||.+|.||++|.|-..+..++....          .+..++.||++|.| .+++|..
T Consensus       308 ~~~ig~~~~i-~~~~i~~---svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~  382 (429)
T PRK02862        308 ESIIAEGCII-KNCSIHH---SVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTI-KRAIIDK  382 (429)
T ss_pred             eCEECCCCEE-CCcEEEE---EEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEE-EEEEECC
Confidence            4678888888 7888864   588888888888888766665531100          01123556666666 4555566


Q ss_pred             CCEECCCCEECCCC
Q 039045          231 NVKIGEGAKVGAGS  244 (295)
Q Consensus       231 ~v~IG~~~~Igags  244 (295)
                      ++.||++|.|..+.
T Consensus       383 ~~~i~~~~~~~~~~  396 (429)
T PRK02862        383 NARIGNNVRIVNKD  396 (429)
T ss_pred             CcEECCCcEEecCC
Confidence            66666666665443

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00045  Score=63.39  Aligned_cols=68  Identities=26%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      .+.|||+|++.+.+.|++  +|.||.+++||++|.|.....+.         .+.|.+|+.+ -+++|+-.++||.-+.|
T Consensus       288 dVyIhPsakvhptAkiGP--NVSIga~vrvg~GvRl~~sIIl~---------d~ei~enavV-l~sIigw~s~iGrWaRV  355 (407)
T KOG1460|consen  288 DVYIHPSAKVHPTAKIGP--NVSIGANVRVGPGVRLRESIILD---------DAEIEENAVV-LHSIIGWKSSIGRWARV  355 (407)
T ss_pred             eeEEcCcceeCCccccCC--CceecCCceecCCceeeeeeecc---------CcEeeccceE-Eeeeecccccccceeee
Confidence            355555555555555555  55555555555555554443332         3444444433 34444444445544444

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.0013  Score=62.80  Aligned_cols=9  Identities=11%  Similarity=0.084  Sum_probs=4.0

Q ss_pred             CCCcEEEcc
Q 039045          251 PARATAVGN  259 (295)
Q Consensus       251 p~~~~v~G~  259 (295)
                      |+|..+.|.
T Consensus       355 ~~g~~i~~~  363 (393)
T COG0448         355 GEGVVIGGD  363 (393)
T ss_pred             CCCcEEcCC
Confidence            444444444

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=96.33  E-value=0.012  Score=52.25  Aligned_cols=12  Identities=17%  Similarity=0.252  Sum_probs=5.5

Q ss_pred             CCcEEEccCcEE
Q 039045          252 ARATAVGNPARL  263 (295)
Q Consensus       252 ~~~~v~G~PA~~  263 (295)
                      .+-+++-+|--+
T Consensus       108 ~g~Ivirnpvpv  119 (277)
T COG4801         108 KGWIVIRNPVPV  119 (277)
T ss_pred             cceEEEcCCccE
Confidence            334445555444

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.23  E-value=0.0073  Score=50.17  Aligned_cols=63  Identities=21%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             eCCCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCC-----CCCCCCCEECCCCEECCCCEE
Q 039045          164 IHPAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGK-----ASGDRHPKIGDGVLIGAGATI  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~-----~~~~~~~~IG~~v~IGa~a~I  228 (295)
                      |-..+.|+++|.+.+  .+++-.+   ..||+|+.|...++|.....     ...+..-.||.+..+--||..
T Consensus        23 irGdvti~~gcVvHP--~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s   93 (190)
T KOG4042|consen   23 IRGDVTIKEGCVVHP--FAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS   93 (190)
T ss_pred             cccceEecCCcEecc--eEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence            344445666666655  3333322   36788888888888765321     112234578887765555433

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=95.86  E-value=0.013  Score=52.15  Aligned_cols=14  Identities=14%  Similarity=0.347  Sum_probs=6.2

Q ss_pred             EcCCcEEccCCEEC
Q 039045          190 IGNNVSILHHVTLG  203 (295)
Q Consensus       190 IG~~v~I~~gv~Ig  203 (295)
                      +|+++.++.+++|.
T Consensus        36 ~g~~iivge~v~i~   49 (277)
T COG4801          36 VGEEIIVGERVRIY   49 (277)
T ss_pred             eeeeEEeccCcEEe
Confidence            34444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
3gvd_A	276	Crystal Structure Of Serine Acetyltransferase Cyse		1e-60
1t3d_A	289	Crystal Structure Of Serine Acetyltransferase From		1e-59
1ssq_A	267	Serine Acetyltransferase- Complex With Cysteine Len		3e-58
1sst_A	267	Serine Acetyltransferase- Complex With Coa Length =		3e-58
1s80_A	278	Structure Of Serine Acetyltransferase From Haemophi		3e-57
1ssm_A	242	Serine Acetyltransferase- Apoenzyme (Truncated) Len		4e-57
3mc4_A	287	Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL TR		7e-53
3p1b_A	314	Crystal Structure Of The Native Serine Acetyltransf		7e-20
3q1x_A	313	Crystal Structure Of Entamoeba Histolytica Serine A		7e-20
3p47_A	315	Crystal Structure Of Entamoeba Histolytica Serine A		7e-20
3f1x_A	310	Three Dimensional Structure Of The Serine Acetyltra		3e-17
4egg_A	207	Computationally Designed Self-Assembling Tetrahedro		6e-08
4dcl_A	207	Computationally Designed Self-Assembling Tetrahedro		2e-07
3srt_A	188	The Crystal Structure Of A Maltose O-Acetyltransfer		2e-07
3ftt_A	199	Crystal Structure Of The Galactoside O-Acetyltransf		2e-07
3v4e_A	202	Crystal Structure Of The Galactoside O-Acetyltransf		3e-07
1kqa_A	203	Galactoside Acetyltransferase In Complex With Coenz		4e-07
3jqy_B	252	Crystal Strucutre Of The Polysia Specific Acetyltra		2e-05
3fs8_A	273	Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Did		3e-05
4aaw_A	459	S.Pneumoniae Glmu In Complex With An Antibacterial		3e-05
1hm9_A	468	Crystal Structure Of S.Pneumoniae N-Acetylglucosami		4e-05
3hjj_A	190	Crystal Structure Of Maltose O-Acetyltransferase Fr		1e-04
1g95_A	459	Crystal Structure Of S.Pneumoniae Glmu, Apo Form Le		1e-04
3mqg_A	192	Crystal Structure Of The 3-N-Acetyl Transferase Wlb		3e-04
4e6t_A	294	Structure Of Lpxa From Acinetobacter Baumannii At 1		4e-04
2ic7_A	185	Crystal Structure Of Maltose Transacetylase From Ge		4e-04
4e6u_A	265	Structure Of Lpxa From Acinetobacter Baumannii At 1		4e-04
1khr_A	209	Crystal Structure Of Vat(D) In Complex With Virgini		6e-04
4ea7_A	220	X-Ray Crystal Structure Of Perb From Caulobacter Cr		7e-04

>pdb|3GVD|A Chain A, Crystal Structure Of Serine Acetyltransferase Cyse From Yersinia Pestis Length = 276

Iteration: 1
 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 155/255 (60%), Gaps = 5/255 (1%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           VW+ IK+EAR  AE EP LAS+ ++T+L H +L  +L++ L NKL               
Sbjct: 12  VWSNIKSEARALAECEPMLASFFHATLLKHENLGSALSYILANKLANPIMPAIAIREVVE 71
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        +S  LL  KGF A QA+R+ H LW Q R+ L
Sbjct: 72  EAYRSDAHMIVSAARDILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWAQDRKAL 131
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           A+ LQ+++S  F VDIHPAA IG GI+ DHATG+VIGETAV+ N+VSIL  VTLGGTGK 
Sbjct: 132 AIYLQNQVSVAFGVDIHPAATIGCGIMLDHATGIVIGETAVVENDVSILQSVTLGGTGKT 191
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           SGDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VPA  TA G PAR+VG  E
Sbjct: 192 SGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVPARIVGKPE 251
Query: 269 KTSSNEECPGESMDH 283
                 + P   MD 
Sbjct: 252 S-----DKPSLDMDQ 261

>pdb|1T3D|A Chain A, Crystal Structure Of Serine Acetyltransferase From E.Coli At 2.2a Length = 289

Iteration: 1
 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 155/247 (62%)
Query: 19  THAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXX 78
           +H + ++   VW  IKAEAR  A+ EP LAS+ ++T+L H +L  +L++ L NKL     
Sbjct: 15  SHXSCEELEIVWNNIKAEARTLADCEPXLASFYHATLLKHENLGSALSYXLANKLSSPIX 74
Query: 79  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAH 138
                                                  +S  LL  KGF A QA+R+ H
Sbjct: 75  PAIAIREVVEEAYAADPEXIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGH 134
Query: 139 KLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILH 198
            LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI  DHATG+V+GETAVI N+VSIL 
Sbjct: 135 WLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIXLDHATGIVVGETAVIENDVSILQ 194
Query: 199 HVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            VTLGGTGK+ GDRHPKI +GV IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G
Sbjct: 195 SVTLGGTGKSGGDRHPKIREGVXIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAG 254
Query: 259 NPARLVG 265
            PAR+VG
Sbjct: 255 VPARIVG 261

>pdb|1SSQ|A Chain A, Serine Acetyltransferase- Complex With Cysteine Length = 267

Iteration: 1
 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/236 (50%), Positives = 150/236 (63%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL               
Sbjct: 5   VWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIE 64
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 65  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 124
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 125 ALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 184
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           SGDRHPK+ +GV+IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct: 185 SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>pdb|1SST|A Chain A, Serine Acetyltransferase- Complex With Coa Length = 267

Iteration: 1
 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/236 (50%), Positives = 150/236 (63%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL               
Sbjct: 5   VWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIE 64
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 65  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 124
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 125 ALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 184
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           SGDRHPK+ +GV+IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct: 185 SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>pdb|1S80|A Chain A, Structure Of Serine Acetyltransferase From Haemophilis Influenzae Rd Length = 278

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 149/236 (63%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL               
Sbjct: 7   VWQHIRQEAKELAENEPXLASFFHSTILKHQNLGGALSYLLANKLANPIXPAISLREIIE 66
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 67  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 126
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 127 ALYLQNQISVAFDVDIHPAAKIGHGIXFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 186
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           SGDRHPK+ +GV IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct: 187 SGDRHPKVREGVXIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 242

>pdb|1SSM|A Chain A, Serine Acetyltransferase- Apoenzyme (Truncated) Length = 242

Iteration: 1
 Score =  218 bits (554), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 149/236 (63%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL               
Sbjct: 5   VWQHIRQEAKELAENEPXLASFFHSTILKHQNLGGALSYLLANKLANPIXPAISLREIIE 64
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 65  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 124
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 125 ALYLQNQISVAFDVDIHPAAKIGHGIXFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 184
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           SGDRHPK+ +GV IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct: 185 SGDRHPKVREGVXIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL TRANSFERASE Hexapeptide Repeat: Serine O-Acetyltransferase From Brucella Melitensis Length = 287

Iteration: 1
 Score =  204 bits (518), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 145/255 (56%), Gaps = 5/255 (1%)
Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXX 88
           +W  I+AEA     ++P L ++LY+TIL+  SLE ++   +  +L               
Sbjct: 32  IWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGHPDVSADILRQTFD 91
Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
                                        F   +L  KGF A Q HR+AH L+ Q R+  
Sbjct: 92  TMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYKQGRKDF 151
Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           A  LQSR S +F  DIHPAA++G G+  DHATG+V+GETAV+ +NVSILH VTLGGTGK+
Sbjct: 152 AYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKS 211
Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           SGDRHPKI  GVLIGAGA ILGN+++G+ +K+ AGSVVL  VP   T  G PAR++G   
Sbjct: 212 SGDRHPKIRQGVLIGAGAKILGNIQVGQXSKIAAGSVVLKSVPHNVTVAGVPARIIG--- 268
Query: 269 KTSSNEECPGESMDH 283
           +T   E  P   MD 
Sbjct: 269 ETGCTE--PSRVMDQ 281

>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1 From Entamoeba Histolytica Length = 314

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 125 YKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVI 184
           Y GF A   +R+AH L+    R     +   +    ++DIHP A I      DH  GVVI
Sbjct: 128 YPGFQAVIVYRIAHVLYECGERYYCREMMESVHSYTSIDIHPGASIKGHFFIDHGVGVVI 187
Query: 185 GETAVIGNNVSILHHVTL--------GGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236
           GETA+IG    I   VTL        GG  K    RHP +GD V IG GA +LGN+ +G 
Sbjct: 188 GETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGS 247
Query: 237 GAKVGAGSVVLIDVPARATA 256
             ++GA   +  DV +  T 
Sbjct: 248 HVRIGANCWIDRDVDSNQTV 267

>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine Acetyltransferase 1 In Complex With L-Serine Length = 313

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 125 YKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVI 184
           Y GF A   +R+AH L+    R     +   +    ++DIHP A I      DH  GVVI
Sbjct: 127 YPGFQAVIVYRIAHVLYECGERYYCREMMESVHSYTSIDIHPGASIKGHFFIDHGVGVVI 186
Query: 185 GETAVIGNNVSILHHVTL--------GGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236
           GETA+IG    I   VTL        GG  K    RHP +GD V IG GA +LGN+ +G 
Sbjct: 187 GETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGS 246
Query: 237 GAKVGAGSVVLIDVPARATA 256
             ++GA   +  DV +  T 
Sbjct: 247 HVRIGANCWIDRDVDSNQTV 266

>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine Acetyltransferase 1 In Complex With L-Cysteine Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 125 YKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVI 184
           Y GF A   +R+AH L+    R     +   +    ++DIHP A I      DH  GVVI
Sbjct: 129 YPGFQAVIVYRIAHVLYECGERYYCREMMESVHSYTSIDIHPGASIKGHFFIDHGVGVVI 188
Query: 185 GETAVIGNNVSILHHVTL--------GGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236
           GETA+IG    I   VTL        GG  K    RHP +GD V IG GA +LGN+ +G 
Sbjct: 189 GETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGS 248
Query: 237 GAKVGAGSVVLIDVPARATA 256
             ++GA   +  DV +  T 
Sbjct: 249 HVRIGANCWIDRDVDSNQTV 268

>pdb|3F1X|A Chain A, Three Dimensional Structure Of The Serine Acetyltransferase From Bacteroides Vulgatus, Northeast Structural Genomics Consortium Target Bvr62 Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 118 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFD 177
           F   +  Y    A   +R+AH+L       +   +         +DIHP A+IG     D
Sbjct: 147 FGEIISCYPAIRAISNYRIAHELLILGVPLIPRFITEXAHSETGIDIHPGAQIGHHFTID 206
Query: 178 HATGVVIGETAVIGNNVSILHHVTLG---------GTGKASGDRHPKIGDGVLIGAGATI 228
           H TGVVIG T++IGNNV +   VTLG         G       RHP + D V++ + ATI
Sbjct: 207 HGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATI 266
Query: 229 LGNVKIGEGAKVGAGSVVLIDVPA 252
           LG V IG+GA VG    V  +VPA
Sbjct: 267 LGRVTIGKGATVGGNIWVTENVPA 290

>pdb|4EGG|A Chain A, Computationally Designed Self-Assembling Tetrahedron Protein, T310 Length = 207

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 117 SFSHCLLN--YKGFLACQAHRVAHKLWTQSRRPLALALQSRISD------VFAVDIHPAA 168
           +F   L+N   +  + C A    + + T  R+ L  AL    +D       F  D     
Sbjct: 16  NFDQTLINERLRAKVICFALNHTNPVATMMRKVLIDALFQTTTDNVSISIPFDTDYGWNV 75
Query: 169 KIGKGILFDHATGVVIGETAVIGNNVSI--------------LHHVTLGGTGKASGDRHP 214
           K+GK +  +     + G    IG+NV I               HH   G   + +G  H 
Sbjct: 76  KLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGF--EKAGPIH- 132
Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            IG     G    +L  V IGEG+ +GAGSVV  D+P  + AVGNP ++V
Sbjct: 133 -IGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVV 181

>pdb|4DCL|A Chain A, Computationally Designed Self-Assembling Tetrahedron Protein, T308, Crystallized In Space Group F23 Length = 207

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 117 SFSHCLLN--YKGFLACQAHRVAHKLWTQSRRPLALALQSRISD------VFAVDIHPAA 168
           +F   L+N   +  + C A    +   T  R+ L  AL    +D       F  D     
Sbjct: 16  NFDQTLINERLRAKVICFALNHTNPSATLKRKVLIDALFQTTTDNVSISIPFDTDYGWNV 75
Query: 169 KIGKGILFDHATGVVIGETAVIGNNVSI--------------LHHVTLGGTGKASGDRHP 214
           K+GK +  +     + G    IG+NV I               HH   G   + +G  H 
Sbjct: 76  KLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGF--EKAGPIH- 132
Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            IG     G    +L  V IGEG+ +GAGSVV  D+P  + AVGNP ++V
Sbjct: 133 -IGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVV 181

>pdb|3SRT|A Chain A, The Crystal Structure Of A Maltose O-Acetyltransferase From Clostridium Difficile 630 Length = 188

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           KIGD V IG G  I   + IG+   +GAGSVV  D+P    AVGNP R++
Sbjct: 134 KIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVI 183

>pdb|3FTT|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase From Staphylococcus Aureus Length = 199

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 156 ISDVFAVDIHPAAKIGKGIL------FDHATGVVIGETAVIGNNVSI--------LHHVT 201
           IS  F  D     K+GK +       F     + IG+   IG N            HH  
Sbjct: 63  ISIPFDTDYGWNVKLGKNVYVNTNCYFXDGGQITIGDNVFIGPNCGFYTATHPLNFHHRN 122
Query: 202 LGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA 261
            G   + +G  H  IG     G    +L  V IGEG+ +GAGSVV  D+P  + AVGNP 
Sbjct: 123 EGF--EKAGPIH--IGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPC 178
Query: 262 RLV 264
           ++V
Sbjct: 179 KVV 181

>pdb|3V4E|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase In Complex With Coa Length = 202

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI--------------LHHVT 201
           IS  F  D     K+GK +  +     + G    IG+NV I               HH  
Sbjct: 66  ISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRN 125
Query: 202 LGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA 261
            G   + +G  H  IG     G    +L  V IGEG+ +GAGSVV  D+P  + AVGNP 
Sbjct: 126 EGF--EKAGPIH--IGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPC 181
Query: 262 RLV 264
           ++V
Sbjct: 182 KVV 184

>pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A Length = 203

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 170 IGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTG-------KASGDRHP---KIGDG 219
           IG+    +    +V   T  IG+NV I  +VTL  TG       + +G+ +     IG+ 
Sbjct: 78  IGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137
Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           V IG+   I   V IG+ + +GAGS+V  D+P    A G P R++
Sbjct: 138 VWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVI 182

>pdb|3JQY|B Chain B, Crystal Strucutre Of The Polysia Specific Acetyltransferase Neuo Length = 252

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGN---------NVSILHHVTLG-------GT 205
           V IH  +KI   I+    + V+IG    IG          NV+I H   +          
Sbjct: 86  VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASD 145
Query: 206 GKASGDRHPK----------IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARAT 255
           G    D H K          I   V +G   +I+  V +G G+ +G GS+V  DVP+   
Sbjct: 146 GHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCA 205
Query: 256 AVGNPARLV 264
           A GNPA+++
Sbjct: 206 AAGNPAKII 214

>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D- Glucose N-Acetyl Transferase From Thermoanaerobacterium Thermosaccharolyticum In Complex With Acetyl-Coa Length = 273

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 180 TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGV----LIGAGATILGNVKIG 235
           + V +GE ++I + V +  HV L  T   +   +  +G  +    +I A + +L  + I 
Sbjct: 135 SNVFVGEKSIIKDFVWLFPHVVL--TNDPTPPSNELLGVTIELFAVIAARSVVLPGIHIN 192
Query: 236 EGAKVGAGSVVLIDVPARATAVGNPAR 262
           E A VGAG+VV  DVP     VGNPAR
Sbjct: 193 EDALVGAGAVVTKDVPKETVVVGNPAR 219

>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           IGD V +G+ +TI+  V++G+ + VGAGS +  DVPA A A+G
Sbjct: 396 IGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG 438

>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           IGD V +G+ +TI+  V++G+ + VGAGS +  DVPA A A+G
Sbjct: 405 IGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG 447

>pdb|3HJJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase From Bacillus Anthracis Length = 190

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 205 TGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           +GK  G +  KIG+ V +G GA I   V IG+ A + +G+VV  DVP      GNPA+++
Sbjct: 127 SGKEYG-KPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVI 185

>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form Length = 459

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
           IG+ V +G+ +TI+  V++G+ + VGAGS +  DVPA A A+G
Sbjct: 396 IGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG 438

>pdb|3MQG|A Chain A, Crystal Structure Of The 3-N-Acetyl Transferase Wlbb From Bo Petrii In Complex With Acetyl-Coa Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 162 VDIHPAAKIGKGILFDH----ATGVVIGETAVIGNNVSILHHVTL--------------- 202
           V I   A+IG+G            V IG    I NNVS+  +V L               
Sbjct: 28  VHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNV 87
Query: 203 ----GGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
                   + S  R   +  G  +GA  T++    IG  A VGAG+VV  DVP  A  VG
Sbjct: 88  YNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVG 147
Query: 259 NPARLVGGKEKTSSNEECP 277
            PAR +G   +     + P
Sbjct: 148 VPARQIGWMSRHGEQLDLP 166

>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a Resolution (P212121 Form) Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA 242
           ++G+  +  NNV +  HV               IGD V++G  + I    KI   + +G 
Sbjct: 159 IVGDHNIFANNVGVAGHV--------------HIGDHVIVGGNSGIHQFCKIDSYSMIGG 204
Query: 243 GSVVLIDVPARATAVGNPARLVG 265
            S++L DVPA   A GNPA   G
Sbjct: 205 ASLILKDVPAYVMASGNPAHAFG 227

>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From Geobacillus Kaustophilus Length = 185

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 173 GILFDHATGVVIGETAVIGNNVSILHHV-TLGGTGKASGDRHPK---IGDGVLIGAGATI 228
           G++ D    V IG+   IG  V I      L    + SG  + K   IG  V IG  A I
Sbjct: 87  GVILD-VCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVI 145
Query: 229 LGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
              V IG+ A + +G+VV  DVPA A   GNPA+++
Sbjct: 146 NPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVI 181

>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a Resolution (P63 Form) Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA 242
           ++G+  +  NNV +  HV               IGD V++G  + I    KI   + +G 
Sbjct: 130 IVGDHNIFANNVGVAGHV--------------HIGDHVIVGGNSGIHQFCKIDSYSMIGG 175
Query: 243 GSVVLIDVPARATAVGNPARLVG 265
            S++L DVPA   A GNPA   G
Sbjct: 176 ASLILKDVPAYVMASGNPAHAFG 198

>pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin And Coenzyme A Length = 209

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
           IG+ V IG    I+  VKIG+GA V A SVV+ D+     A GNPA 
Sbjct: 116 IGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPAN 162

>pdb|4EA7|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter Crescentus In Complex With Coa And Gdp-Perosamine At 1.0 Angstrom Resolution Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 23/155 (14%)
Query: 128 FLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVV---- 183
           F+A   +R+  KL  ++R           S V A  IHP+A +   +       V+    
Sbjct: 75  FVAIGDNRLRQKLGRKAR-------DHGFSLVNA--IHPSAVVSPSVRLGEGVAVMAGVA 125
Query: 184 ------IGETAVIGNNVSILHHVTLGGT---GKASG-DRHPKIGDGVLIGAGATILGNVK 233
                 IG+ A+I     + H   LG     G AS       +G+   +G GA ++  V 
Sbjct: 126 INADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVT 185
Query: 234 IGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           IG    VGAG VV+ D+P    A+G PA++ G + 
Sbjct: 186 IGADTIVGAGGVVVRDLPDSVLAIGVPAKIKGDRS 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	1e-150
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	1e-150
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	1e-148
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	3e-66
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	3e-65
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	1e-28
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	2e-27
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	4e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	4e-27
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	3e-06
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	6e-27
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-11
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	3e-25
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	1e-21
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	1e-20
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	2e-20
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	2e-20
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	2e-20
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	2e-20
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	2e-20
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	2e-20
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	7e-19
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-18
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	4e-06
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	2e-17
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	3e-17
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	3e-17
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	7e-17
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	7e-15
3r3r_A	187	Ferripyochelin binding protein; structural genomic	1e-14
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	1e-14
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	2e-14
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	3e-14
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	1e-12
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	1e-07
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-12
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	9e-08
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-12
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	9e-08
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-12
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	8e-08
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	2e-12
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-08
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	3e-12
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-06
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	7e-12
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-10
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	2e-07
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-06
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-11
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	4e-10
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-07
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	1e-06
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	3e-11
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	5e-10
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	4e-09
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	2e-10
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	3e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	6e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	3e-05
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	5e-05
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	4e-04
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	2e-08
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	4e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-05
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	4e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	1e-05
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	5e-07
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	6e-07
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	1e-06
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	3e-06
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	4e-06
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	1e-05
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} Length = 287

 Score =  421 bits (1084), Expect = e-150
 Identities = 123/284 (43%), Positives = 166/284 (58%), Gaps = 10/284 (3%)

Query: 1   MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSS 60
           M   E +   P        +A  D    +W  I+AEA     ++P L ++LY+TIL+  S
Sbjct: 9   MGTLEAQTQGPGS-----MNAGLDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPS 63

Query: 61  LERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSH 120
           LE ++   +  +L    + + +L   F     ++P        D++A   RDPA   F  
Sbjct: 64  LEEAVMHRIAERLGHPDVSADILRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMD 123

Query: 121 CLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHAT 180
            +L  KGF A Q HR+AH L+ Q R+  A  LQSR S +F  DIHPAA++G G+  DHAT
Sbjct: 124 PVLYLKGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHAT 183

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           G+V+GETAV+ +NVSILH VTLGGTGK+SGDRHPKI  GVLIGAGA ILGN+++G+ +K+
Sbjct: 184 GLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKI 243

Query: 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284
            AGSVVL  VP   T  G PAR++G      +    P   MD  
Sbjct: 244 AAGSVVLKSVPHNVTVAGVPARIIG-----ETGCTEPSRVMDQM 282

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 Length = 289

 Score =  420 bits (1081), Expect = e-150
 Identities = 140/280 (50%), Positives = 190/280 (67%), Gaps = 9/280 (3%)

Query: 19  THAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTL 78
           +H + ++   VW  IKAEAR  A+ EP LAS+ ++T+L H +L  +L++ L NKL S  +
Sbjct: 15  SHMSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIM 74

Query: 79  LSTLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAH 138
            +  + ++  + +++DP + A+A  D++A R RDPA   +S  LL  KGF A QA+R+ H
Sbjct: 75  PAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGH 134

Query: 139 KLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILH 198
            LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL 
Sbjct: 135 WLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQ 194

Query: 199 HVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G
Sbjct: 195 SVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAG 254

Query: 259 NPARLVGGKEKTSSNEECPGESMDH----TSFISEWSDYI 294
            PAR+VG       + + P   MD      +   E+ D I
Sbjct: 255 VPARIVG-----KPDSDKPSMDMDQHFNGINHTFEYGDGI 289

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* Length = 267

 Score =  415 bits (1068), Expect = e-148
 Identities = 132/256 (51%), Positives = 176/256 (68%), Gaps = 5/256 (1%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL +  + +  L ++  
Sbjct: 5   VWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIE 64

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           + + S+P++   A  D++A R RDPA   +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 65  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 124

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 125 ALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 184

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268
           SGDRHPK+ +GV+IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V    
Sbjct: 185 SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVS--- 241

Query: 269 KTSSNEECPGESMDHT 284
                   P   M+  
Sbjct: 242 --QDKAAKPAFDMNQY 255

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310

 Score =  208 bits (531), Expect = 3e-66
 Identities = 66/189 (34%), Positives = 85/189 (44%), Gaps = 19/189 (10%)

Query: 95  PALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQS 154
           P LR     D+ AA   DPA   F   +  Y    A   +R+AH+L       +      
Sbjct: 124 PELRRILATDVEAAYYGDPAATCFGEIISCYPAIRAISNYRIAHELLILGVPLIP----- 178

Query: 155 RISDVFA-----VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG------ 203
           R     A     +DIHP A+IG     DH TGVVIG T++IGNNV +   VTLG      
Sbjct: 179 RFITEMAHSETGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPL 238

Query: 204 ---GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260
              G       RHP + D V++ + ATILG V IG+GA VG    V  +VPA +  V   
Sbjct: 239 DNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTENVPAGSRIVQRK 298

Query: 261 ARLVGGKEK 269
            +       
Sbjct: 299 NKDELEHHH 307

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score =  206 bits (525), Expect = 3e-65
 Identities = 65/203 (32%), Positives = 86/203 (42%), Gaps = 20/203 (9%)

Query: 95  PALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQS 154
           P+++     DL AA   DPA    S  +  Y GF A   +R+AH L+    R        
Sbjct: 97  PSIKRTLKTDLIAAYAGDPAAPGLSLIIRCYPGFQAVIVYRIAHVLYECGERYYC----- 151

Query: 155 RISDVFA-----VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG------ 203
           R           +DIHP A I      DH  GVVIGETA+IG    I   VTLG      
Sbjct: 152 REMMESVHSYTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQE 211

Query: 204 --GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV--GN 259
             G  K    RHP +GD V IG GA +LGN+ +G   ++GA   +  DV +  T     +
Sbjct: 212 EGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEH 271

Query: 260 PARLVGGKEKTSSNEECPGESMD 282
           P   V          +    ++ 
Sbjct: 272 PTHFVKPCTTKGMKNDTEIIAII 294

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score =  109 bits (273), Expect = 1e-28
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+  A IG+G + D     V+G  A +G N  +     L G  +    +   + D V+IG
Sbjct: 118 INIGAVIGEGSMID--MNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIG 175

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG-----KEKTSSNE 274
           A   +L  V +G+GA V AG+VV  DVP      G PAR++       K KT   +
Sbjct: 176 ANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIKEIDEKTKAKTEIKQ 231

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score =  104 bits (261), Expect = 2e-27
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+  AKI KG++ +  T  VI    VIG    +       G        + KIG    +G
Sbjct: 104 INAKAKIEKGVILN--TSSVIEHECVIGEFSHVSVGAKCAG--------NVKIGKNCFLG 153

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
             + +L N+ + + + +G G+ ++ +   +   VG PA+
Sbjct: 154 INSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAK 192

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 18/64 (28%)

Query: 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA 242
           +I ++A+I  +  +                  +   G+LI     I    KI +G  +  
Sbjct: 77  LIHKSALISPSAIV------------------EENAGILIMPYVVINAKAKIEKGVILNT 118

Query: 243 GSVV 246
            SV+
Sbjct: 119 SSVI 122

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score =  103 bits (260), Expect = 4e-27
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 162 VDIHPAAKIGK-------GILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP 214
             +     IG          L+    G+ + + A I +   +   +         G   P
Sbjct: 65  CILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIP 124

Query: 215 K-----------IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 263
                       +   V+IGA + I  NV IGEG  VGA S+V   +      VG P R 
Sbjct: 125 NQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRK 184

Query: 264 VGGKEKTSSNEE 275
           +  +++     E
Sbjct: 185 IKARKRKIVELE 196

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSV 245
               +G NV I    ++             IG+ V I     + G V IG  + + A + 
Sbjct: 31  GFLSVGKNVLISKKASI------YNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTA 84

Query: 246 VLID 249
           +   
Sbjct: 85  LYGG 88

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score =  105 bits (263), Expect = 6e-27
 Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRH--PKIGDG 219
            DI     IG  +       V +GE ++I + V +  HV L        +      I   
Sbjct: 119 SDIQHHVYIGNYVNIHS--NVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELF 176

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG----GKEKTSSNEE 275
            +I A + +L  + I E A VGAG+VV  DVP     VGNPAR +      K K +  + 
Sbjct: 177 AVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREICSIRKIKNKITGEQV 236

Query: 276 CPGESMDHTSFISEWSDY 293
            P           E +DY
Sbjct: 237 YPWRYTFKRGMPWEETDY 254

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 22/90 (24%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I  +A I +G        V+IGE   I +NV I +                 I D V I 
Sbjct: 5   ISKSAIIKEG--------VIIGENVTIEDNVYIDYGC--------------IIRDNVHIK 42

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPAR 253
            G+ I     +GE         +    P  
Sbjct: 43  KGSFIGARSILGEYLVDFYNDRINKKHPLI 72

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVL 221
           ++      IG+          VI    +IG+N    H VT+          + KIG+ V 
Sbjct: 65  INKKHPLIIGENA-LIRT-ENVIYGDTIIGDNFQTGHKVTIRE--------NTKIGNNVK 114

Query: 222 IGAGATILGNVKIGEGAKVGAGSVV 246
           IG  + I  +V IG    + +   V
Sbjct: 115 IGTLSDIQHHVYIGNYVNIHSNVFV 139

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I+  + IG   + +  TG V+     +G    +     L G           +G+   +G
Sbjct: 126 INADSWIGDLAIIN--TGAVVDHDCRLGAACHLGPASALAG--------GVSVGERAFLG 175

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267
            GA ++  V IG    VGAG VV+ D+P    A+G PA++ G +
Sbjct: 176 VGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAKIKGDR 219

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 90.7 bits (225), Expect = 1e-21
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 169 KIGKG--------ILFDHATGVVIGETAVIGNNVSIL----HHVTLGGTGKASGDRHP-K 215
            IG+         ++ D    V IG   +I  +V +     H +    + K         
Sbjct: 107 IIGRRTTIGAGFEVVTDKC-NVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDII 165

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEE 275
           I   V +G   +I+  V +G G+ +G GS+V  DVP+   A GNPA+++  K        
Sbjct: 166 ISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKII--KRNIIWART 223

Query: 276 CPGESMDHTSFISEWSDYI 294
              E +      S +   +
Sbjct: 224 DKAELISDDKRCSSYHAKL 242

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* Length = 199

 Score = 86.4 bits (215), Expect = 1e-20
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            + IG+   IG N       H +       G       P  IG     G    +L  V I
Sbjct: 94  QITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKA--GPIHIGSNTWFGGHVAVLPGVTI 151

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           GEG+ +GAGSVV  D+P  + AVGNP ++V
Sbjct: 152 GEGSVIGAGSVVTKDIPPHSLAVGNPCKVV 181

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            V IG+  +I  NV++    H V       G+      P  IG+ V IG+   I   V I
Sbjct: 95  TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYS--FPITIGNNVWIGSHVVINPGVTI 152

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G+ + +GAGS+V  D+P    A G P R++
Sbjct: 153 GDNSVIGAGSIVTKDIPPNVVAAGVPCRVI 182

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} PDB: 3ect_A* Length = 195

 Score = 86.0 bits (214), Expect = 2e-20
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            + IG+  +IG +       H +        +      P  I D V IG    I   V I
Sbjct: 96  PITIGDHVLIGPSTQFYTASHSLDYRRRQAWETIC--KPIVIEDDVWIGGNVVINQGVTI 153

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G  + V A SVV  DVP      G PAR++
Sbjct: 154 GARSVVAANSVVNQDVPPDTLVGGTPARIL 183

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A Length = 185

 Score = 85.6 bits (213), Expect = 2e-20
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            V IG+   IG  V I    H +      +G   G   P  IG  V IG  A I   V I
Sbjct: 94  EVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYG--KPVVIGHNVWIGGRAVINPGVTI 151

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G+ A + +G+VV  DVPA A   GNPA+++
Sbjct: 152 GDNAVIASGAVVTKDVPANAVVGGNPAKVI 181

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} Length = 188

 Score = 85.6 bits (213), Expect = 2e-20
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            + IG+  ++  NV I    H +      +G   G   P KIGD V IG G  I   + I
Sbjct: 96  KIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYG--SPVKIGDNVWIGGGVIITPGITI 153

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G+   +GAGSVV  D+P    AVGNP R++
Sbjct: 154 GDNVVIGAGSVVTKDIPPNTVAVGNPCRVI 183

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} PDB: 3igj_A* Length = 190

 Score = 85.6 bits (213), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGGTGKASGDRHPK---IGDGVLIGAGATILGNVKI 234
            V IG+  +    V I    H   L    + SG  + K   IG+ V +G GA I   V I
Sbjct: 98  EVRIGDHCMFAPGVHIYTATHP--LHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSI 155

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G+ A + +G+VV  DVP      GNPA+++
Sbjct: 156 GDNAVIASGAVVTKDVPNNVVVGGNPAKVI 185

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 Length = 182

 Score = 85.2 bits (212), Expect = 2e-20
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 181 GVVIGETAVIGNNVSIL---HHVTLGG--TGKASGDRHP-KIGDGVLIGAGATILGNVKI 234
            + IG+  ++   V I    H +      +G   G   P  IG+ V IG  A I   V I
Sbjct: 92  PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELG--KPVTIGNNVWIGGRAVINPGVTI 149

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           G+   V +G+VV  DVP      GNPAR++
Sbjct: 150 GDNVVVASGAVVTKDVPDNVVVGGNPARII 179

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* Length = 215

 Score = 82.1 bits (203), Expect = 7e-19
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 170 IGKGILFDHATGVVIGETAVIGNNVSIL----HHVTLGGTGKASGDRHP-KIGDGVLIGA 224
               I       + IG+  ++ +   I     H +     G+         IG+ V +G 
Sbjct: 89  GNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGR 148

Query: 225 GATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLV 264
             TIL  V I     VG+ +V+            G+PA++V
Sbjct: 149 NVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIV 189

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 27/129 (20%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL------------GGTGKAS 209
           V I   A+IG+G        V +G    IGN V I ++V++            G +   +
Sbjct: 28  VHICGGAEIGEGCSLG--QNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFT 85

Query: 210 GDRHP-------------KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATA 256
              +P              +  G  +GA  T++    IG  A VGAG+VV  DVP  A  
Sbjct: 86  NVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALV 145

Query: 257 VGNPARLVG 265
           VG PAR +G
Sbjct: 146 VGVPARQIG 154

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 20/70 (28%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
              I  TA++                        +IG    I     I G  +IGEG  +
Sbjct: 3   MATIHPTAIVDEGA--------------------RIGAHSRIWHWVHICGGAEIGEGCSL 42

Query: 241 GAGSVVLIDV 250
           G    V   V
Sbjct: 43  GQNVFVGNRV 52

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 27/109 (24%)

Query: 183 VIGETAVIGNNVSILHHVTLGGTG---------------------------KASGDRHPK 215
           VIG+  +IG   SI    T    G                                   +
Sbjct: 61  VIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIE 120

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           IG+ V IG   TI+  VKIG+GA + A +VV  +V   +   GNP + +
Sbjct: 121 IGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFI 169

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 77.7 bits (191), Expect = 3e-17
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 169 KIGKGILFDH-ATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP-------KIGDGV 220
            IG        A  ++ G         S      +      +G  +         IG  V
Sbjct: 58  VIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEV 117

Query: 221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
            IG  A  +  V++G GA +G+ ++V  DV   A   GNPAR +
Sbjct: 118 WIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTI 161

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 77.6 bits (191), Expect = 3e-17
 Identities = 35/134 (26%), Positives = 48/134 (35%), Gaps = 38/134 (28%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP------- 214
            D        K IL+ +    ++ +   IG   SI   VT+      +G  H        
Sbjct: 38  YDSKNGETFDKQILYHYP---ILNDKLKIGKFCSIGPGVTII----MNGANHRMDGSTYP 90

Query: 215 ------------------------KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
                                    IG+ V IG    I+  VKIG+GA V A SVV+ D+
Sbjct: 91  FNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDI 150

Query: 251 PARATAVGNPARLV 264
                A GNPA  +
Sbjct: 151 APYMLAGGNPANEI 164

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 76.5 bits (188), Expect = 7e-17
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 11/105 (10%)

Query: 169 KIGKGILFDHATGVVI---GETAVIGNNVSILHHVTLGGTGKASGDRHPK------IGDG 219
            IG        +G V    G      + +S            A             IG  
Sbjct: 60  VIGSFCSI--GSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHD 117

Query: 220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           V IG  A I+  VKIG GA + + SVV  DV        NPA+ +
Sbjct: 118 VWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHI 162

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score = 70.0 bits (172), Expect = 7e-15
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 185 GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
               ++ ++V++ H V L             I    LIG G+ IL   +IGEGA +GAGS
Sbjct: 71  QYPLILEDDVTVGHQVILHSC---------HIKKDALIGMGSIILDGAEIGEGAFIGAGS 121

Query: 245 VVL--IDVPARATAVGNPARLV 264
           +V     +P    A G PA+++
Sbjct: 122 LVSQGKKIPPNTLAFGRPAKVI 143

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 185 GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
           G   +IG +V++ H V L G           IG+ VL+G G+ +L    I +   +GAGS
Sbjct: 81  GNPLIIGEDVTVGHKVMLHGC---------TIGNRVLVGMGSIVLDGAIIEDDVMIGAGS 131

Query: 245 VVL--IDVPARATAVGNPARLV 264
           +V     + +    +G+P + +
Sbjct: 132 LVPQHKRLESGYLYLGSPVKQI 153

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 185 GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
           G   +IG++V+I H   L G           IG+ VLIG  + I+    + +   V AG+
Sbjct: 85  GYPLIIGDDVTIGHQAMLHGC---------TIGNRVLIGMKSMIMDGAIVEDEVIVAAGA 135

Query: 245 VVL--IDVPARATAVGNPARLV 264
            V     + +    +G PA+ V
Sbjct: 136 TVSPGKVLESGFVYMGTPAKKV 157

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)

Query: 185 GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
           G    IG  V+I H+  + G          K+G+ V+IG  + IL   KIG+   +GAG+
Sbjct: 69  GYPTEIGEYVTIGHNAMVHGA---------KVGNYVIIGISSVILDGAKIGDHVIIGAGA 119

Query: 245 VVL--IDVPARATAVGNPARLV 264
           VV    ++P  +  +G P ++V
Sbjct: 120 VVPPNKEIPDYSLVLGVPGKVV 141

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL- 247
           VIG  V+I H   L             +G+   +G G+ ++    + EG+ + AGS++  
Sbjct: 97  VIGKFVTIGHSCILHAC---------TLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 147

Query: 248 -IDVPARATAVGNPARLV 264
              V +     G PA+ +
Sbjct: 148 GKIVKSGELWAGRPAKFL 165

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
            +GN   + ++ TL G        H  + D  +IG    +     IG    VG  S V  
Sbjct: 128 TVGNRCILANNATLAG--------HVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQ 179

Query: 249 DVPARATAVGNPARLVG 265
           DVP    A GN A   G
Sbjct: 180 DVPPYVIAQGNHATPFG 196

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           +   A IG            IG   ++G +V                    +IG+G ++ 
Sbjct: 14  VEEGASIGAN--------AHIGPFCIVGPHV--------------------EIGEGTVLK 45

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           +   + G+ KIG   ++   + +
Sbjct: 46  SHVVVNGHTKIGRDNEIYQFASI 68

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 162 VDIHPAAKIGKGI-------LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHP 214
             I+P  + G          L      V +    VIG++  + + VTL G        H 
Sbjct: 92  CMINPGTEGGIKKTLIGDKNLL--MAYVHVAHDCVIGSHCILANGVTLAG--------HI 141

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
           +IGD V IG    I   V+I +G  +   S +  DVP   T  GN A + G
Sbjct: 142 EIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRG 192

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A+I KG        V IGE  VIG+ V                    K+ +GV + 
Sbjct: 10  ISPKAEINKG--------VEIGEFCVIGDGV--------------------KLDEGVKLH 41

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
              T+ G+  +G+  ++   +V+
Sbjct: 42  NNVTLQGHTFVGKNTEIFPFAVL 64

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
            +G++V +  +  + G        H +IGD  ++G  + +   V+IG  + +G  S ++ 
Sbjct: 145 RVGSHVVLSSNAQMAG--------HVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQ 196

Query: 249 DVPARATAVGNPARLVG 265
           D+P    A GN A   G
Sbjct: 197 DIPPFVIAAGNKAEPHG 213

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A++ +         V +G  A++G+NV                     IG    IG
Sbjct: 31  IEPGAQLHET--------VEVGPYAIVGSNV--------------------TIGARTTIG 62

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           + + I G+  IGE  ++G  + V
Sbjct: 63  SHSVIEGHTTIGEDNRIGHYASV 85

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
           ++GNN+ + ++ TL G        H ++GD  ++G    I   VK+GEG  +   S +  
Sbjct: 128 LLGNNIILANNATLAG--------HVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQ 179

Query: 249 DVPARATAVGNPARLVG 265
           D+     A GN A +  
Sbjct: 180 DIVPFCLAEGNRASIRS 196

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I   A++G          VVI   A +  +                     KIG+ V+I 
Sbjct: 13  IEEGAQLGDD--------VVIEAYAYVSKDA--------------------KIGNNVVIK 44

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
            GA IL +  IG+ ++V + ++V
Sbjct: 45  QGARILSDTTIGDHSRVFSYAIV 67

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
           ++GNN  + H   L G        H  +G+   I     +     +G+ + V   + V+ 
Sbjct: 123 ILGNNNILTHGAVLAG--------HVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQ 174

Query: 249 DVPARATAVGNPARLVG 265
           DVP  +T  GNP+ +VG
Sbjct: 175 DVPPYSTVDGNPSTVVG 191

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 28/83 (33%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A++ +         V +G  ++I  NV                     I +G +I 
Sbjct: 9   IDPKAELHES--------VEVGPYSIIEGNV--------------------SIQEGTIIE 40

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
               I    +IG+  +   G+V+
Sbjct: 41  GHVKICAGSEIGKFNRFHQGAVI 63

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248
            IG+     ++  L G        H  + D       + +     IG  A +G GSVV  
Sbjct: 152 KIGDRNIFANNTLLAG--------HVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQ 203

Query: 249 DVPARATAVGNPARLVG 265
           DVP      G  A L G
Sbjct: 204 DVPKYMMVAGERAELRG 220

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 28/96 (29%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           +HP A IGKG        V +G    IG++V                    K+G+G  + 
Sbjct: 16  VHPNAVIGKG--------VSVGPYCTIGSSV--------------------KLGNGCKLY 47

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGN 259
             + + GN ++GE   +  G+VV  ++P       N
Sbjct: 48  PSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCN 83

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I   AK+G  +        VI     +G+NV I     +G        ++ KIG G  + 
Sbjct: 106 IDATAKLGNNVSIGA--NAVIESGVELGDNVIIGAGCFVG--------KNSKIGAGSRLW 155

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
           A  TI   ++IG+   + +G+VV
Sbjct: 156 ANVTIYHEIQIGQNCLIQSGTVV 178

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 16/97 (16%)

Query: 154 SRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRH 213
           +R++ +      PA  I         +  VI  TA +GNNVSI  +  +           
Sbjct: 84  ARMAQILDTTPQPAQNI-------APS-AVIDATAKLGNNVSIGANAVIE--------SG 127

Query: 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
            ++GD V+IGAG  +  N KIG G+++ A   +  ++
Sbjct: 128 VELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           +IG   +I N   I H+V +G       G   A      KIG   +IG  + I G+++I 
Sbjct: 224 IIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGS---LKIGRYCMIGGASVINGHMEIC 280

Query: 236 EGAKVGAGSVVLIDVP-ARATAVGNPAR 262
           +   V    +V+  +      + G P +
Sbjct: 281 DKVTVTGMGMVMRPITEPGVYSSGIPLQ 308

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 30/97 (30%), Gaps = 19/97 (19%)

Query: 162 VDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVSILHHVTLGGTG---KASGDRHP 214
           V I     +GK       +     V I     IG N  I     +G  G           
Sbjct: 134 VIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWV 193

Query: 215 K--------IGDGVLIGAGATI----LGNVKIGEGAK 239
           K        IGD V IGA  TI    L +  IG G  
Sbjct: 194 KIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVI 230

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           +   A++            VI   A IG  VSI  H  +G            IG+G  + 
Sbjct: 128 VAADAEVDPSASVGA--YAVIESGARIGAGVSIGAHCVIG--------ARSVIGEGGWLA 177

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
              T+  +V IG    + +G+V+
Sbjct: 178 PRVTLYHDVTIGARVSIQSGAVI 200

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 154 SRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRH 213
           + +S +F        K   GI   H T  ++   A +  + S+  +  +           
Sbjct: 106 ASLSHLF----DRKPKAAAGI---HPT-AIVAADAEVDPSASVGAYAVIE--------SG 149

Query: 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
            +IG GV IGA   I     IGEG  +     +  DV
Sbjct: 150 ARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           +IG    + N + I H+V +G         G +      KIG   ++  G  ++G+++I 
Sbjct: 246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGS---AKIGRHCMLAGGVGLVGHIEIC 302

Query: 236 EGAKVGAGSVVLIDVP-ARATAVGNPAR 262
           +   V   ++V   +    + + G   +
Sbjct: 303 DNVFVTGMTMVTRSITEPGSYSSGTAMQ 330

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 19/97 (19%)

Query: 162 VDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVSILHHVTLGGTG---KASGDRHP 214
           V I     IG   +          V +     IG  VSI     +GG G           
Sbjct: 156 VSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQ 215

Query: 215 K--------IGDGVLIGAGATI----LGNVKIGEGAK 239
           K        IGD V IGA  TI    L +  IG G K
Sbjct: 216 KIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVK 252

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           IHP A I   +  +     V+ + A +G+   I     +G         +  +G+   I 
Sbjct: 133 IHPTAIIEDHVCIEP--YAVVCQHAHVGSACHIGSGSVIG--------AYSTVGEHSYIH 182

Query: 224 AGATILGNVKIGEGAKVGAGSVV 246
               I   V IG+   +  G+V+
Sbjct: 183 PRVVIRERVSIGKRVIIQPGAVI 205

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 154 SRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRH 213
            +  ++F     P      GI   H T  VI  TA+I ++V I  +  +         +H
Sbjct: 110 QKCLELFI---TPVDSGFPGI---HPT-AVIHPTAIIEDHVCIEPYAVVC--------QH 154

Query: 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250
             +G    IG+G+ I     +GE + +    V+   V
Sbjct: 155 AHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERV 191

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 183 VIGETAVIGNNVSILHHVTLG-------GTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235
           V+ E + I N V I H V +G         G A      KIG+ V+IG  A I G++ I 
Sbjct: 252 VVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGS---TKIGNHVIIGGQAGITGHICIA 308

Query: 236 EGAKVGAGSVVLIDVPARATAVGNPAR 262
           +   + A + V   + +     G PAR
Sbjct: 309 DHVIMMAQTGVTKSITSPGIYGGAPAR 335

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 162 VDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVSILHHVTLGGTG----KASGDRH 213
             I   + IG        +     VVI E   IG  V I     +G  G     ++  +H
Sbjct: 161 CHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQH 220

Query: 214 PK--------IGDGVLIGAGATI----LGNVKIGEGAKV 240
                     I D V IGA  TI      +  + EG+K+
Sbjct: 221 KHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKI 259

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 20/116 (17%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227
           A +GKG          I   + +  N    H   +             +GD +  G  + 
Sbjct: 309 AWMGKGSNAQENC--YII-NSRLERNCVTAHGGKIINA---------HLGDMIFTGFNSF 356

Query: 228 ILGN----VKIGEGAKVGAGSVV----LIDVPARATAVGNPARLVGGKEKTSSNEE 275
           + G+    +KIG+G  V   +++     +++PA     G           + S EE
Sbjct: 357 LQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYIRNKADLAAHSISFEE 412

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} Length = 304

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           ++  A + KG + D  T   +G  A IG NV +   V +GG  +        I D   IG
Sbjct: 155 VNLGAYVDKGAMID--TWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIG 212

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
           A + ++    + EG+ +G G  +         A G    
Sbjct: 213 ARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFY 251

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 168 AKIGKGILFDHATGV---VIGETAVIG------NNVSILHHVTLGGTGKASGDRHPK--- 215
           + I +G    H + V   VI E    G      N       V +   GK       K   
Sbjct: 298 SVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGA 357

Query: 216 -IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARA 254
            IG  V  G   TIL  VKIG  A++  G+VV  DV    
Sbjct: 358 FIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGE 397

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
             +       N  ++  +V + G           I +   I +G  I G V IG+G+++G
Sbjct: 221 WALDNLVFSQNLGNVEDNVKIKG--------KVIIEEDAEIKSGTYIEGPVYIGKGSEIG 272

Query: 242 AGSVV 246
             S +
Sbjct: 273 PNSYL 277

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 20/122 (16%)

Query: 129 LACQAHRV----AHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVI 184
           L  + HRV        W    +P  +   ++ +    V       +   +       V+I
Sbjct: 190 LMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKG--KVII 247

Query: 185 GETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
            E A I +   I   V               IG G  IG  + +     + E  K+GA  
Sbjct: 248 EEDAEIKSGTYIEGPVY--------------IGKGSEIGPNSYLRPYTILVEKNKIGASV 293

Query: 245 VV 246
            V
Sbjct: 294 EV 295

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240
           G  IG     G NV+IL  V              KIG    I  GA +  +V  GE  KV
Sbjct: 356 GAFIGGHVRTGINVTILPGV--------------KIGAYARIYPGAVVNRDVGYGEFFKV 401

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 153 QSRISDVFAVDIHPAAKIGKGILFDHATGV----VIGETAVIGNNVSILHHVTLGGTGKA 208
              I D   V  H  A++  G   D    +     + E A+I  N  + HHV +GG  + 
Sbjct: 201 NVWICDCAKVYGH--ARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEV 258

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGN 259
            G     + D VLI   A I G + I    ++   + V+          G 
Sbjct: 259 RGGPI-LLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGP 308

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            IGD V +G+   ++  V +  GA +GAG+ V  DV      + 
Sbjct: 399 IIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVIS 442

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
           L D +    +      G +++I  +V + G        H  +GD V IG G  +L N  I
Sbjct: 257 LLDPSR-FDLRGELTHGRDITIDTNVIIEG--------HVILGDRVRIGTG-CVLKNCVI 306

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARL 263
           G+ +++   +V+          VG  ARL
Sbjct: 307 GDDSEISPYTVLEDARLDANCTVGPFARL 335

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            IGD V +G+   ++  VK+  GA +GAG+ +  DV      + 
Sbjct: 396 IIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVIT 439

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 175 LFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234
           ++D A    +  T   G +V I  +V + G        + K+GD V IG G  +L NV I
Sbjct: 254 IYDPAR-FDLRGTLEHGKDVEIDVNVIIEG--------NVKLGDRVKIGTG-CVLKNVVI 303

Query: 235 GEGAKVGAGSVVLIDVPARATAVGNPARL 263
           G   ++   SV+   +     A+G  +RL
Sbjct: 304 GNDVEIKPYSVLEDSIVGEKAAIGPFSRL 332

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            IGD V +G+ +TI+  V++G+ + VGAGS +  DVPA A A+G
Sbjct: 404 VIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG 447

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258
            +G  V  G+    +  V IG+GA  GAG+VV  DVP  A AV 
Sbjct: 413 TVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVS 456

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A Length = 276

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
            A + +G + D  T   +G  A IG NV +   V +GG  +        I D   +GA +
Sbjct: 133 GAFVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARS 190

Query: 227 TILGNVKIGEGAKVGAGSVVLIDVPA 252
            ++  V + EG+ +  G  +      
Sbjct: 191 EVVEGVIVEEGSVISMGVFIGQSTRI 216

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} Length = 316

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGA 226
            A + +G + D  T   +G  A IG NV +   V +GG  +        I D   IGA +
Sbjct: 174 GAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARS 231

Query: 227 TILGNVKIGEGAKVGAGSVVLIDVPA 252
            ++  V + E + +  G  +      
Sbjct: 232 EVVEGVIVEENSVISMGVYLGQSTKI 257

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 26/107 (24%)

Query: 165 HPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGA 224
               + G+ I  +            IGNNVS+ H   + G           +GD   IG 
Sbjct: 118 ETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAA--------VGDDTFIGM 169

Query: 225 GATILGNVKIGEG-----AKVGAGSVV----------LI--DVPARA 254
            A +    K+G            G  +          ++     A  
Sbjct: 170 QAFVF-KSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADK 215

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 164 IHPAAK-IGKGILFDHAT---GVVI----GETAVIGNNVSI-----LHHVTLGGTGKASG 210
           +H  +  IG   + D+     G  I    G    IG+  +I     +H +  G      G
Sbjct: 48  VHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDG 107

Query: 211 DRHP-KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247
             +   IGD V I   A I G   IG+G  +G  S V 
Sbjct: 108 QEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVF 145

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 189 VIGNNVSILHHVTLGGTGKASGDR----------HPKIGDGVLIGAGATILGNVKIGEGA 238
            IG+NVSI H   + G     GD           + ++G G ++     I   V+I  G 
Sbjct: 113 WIGDNVSITHMALIHGPAYI-GDGCFIGFRSTVFNARVGAGCVVMMHVLIQD-VEIPPGK 170

Query: 239 KVGAGSVVLIDVPARA 254
            V +G V+     A  
Sbjct: 171 YVPSGMVITTQQQADR 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 36/146 (24%)

Query: 32  QIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLD-T 90
            I      D    P L  Y Y    SH      +  HL N         TL   +FLD  
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY----SH------IGHHLKN--IEHPERMTLFRMVFLDFR 501

Query: 91  F------SSDPALRAAA-----VADLRAAR----VRDPACVSFSHCLLNYKGFLACQAHR 135
           F          A  A+      +  L+  +      DP    +   +     FL     +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNAILDFL----PK 554

Query: 136 VAHKLW-TQSRRPLALALQSRISDVF 160
           +   L  ++    L +AL +    +F
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	100.0
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	100.0
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	100.0
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	100.0
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	100.0
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.89
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.89
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.88
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.88
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.87
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.86
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.86
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.82
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.8
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.8
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.79
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.79
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.78
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.78
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.77
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.77
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.77
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.76
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.76
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.75
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.75
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.74
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.73
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.73
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.72
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.72
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.71
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.71
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.71
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.71
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.71
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.7
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.7
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.7
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.69
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.69
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.69
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.69
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.68
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.68
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.66
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.66
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.64
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.63
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.63
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.6
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.6
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.6
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.58
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.58
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.57
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.55
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.51
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.5
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.5
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.49
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.48
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.47
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.47
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.46
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.45
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.45
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.42
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.42
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.41
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.41
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.41
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.41
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.4
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.39
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.39
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.39
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.39
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.38
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.38
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.38
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.37
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.37
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.33
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.33
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.32
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.32
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.32
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.31
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.3
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.3
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.29
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.29
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.26
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.24
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.24
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.23
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.22
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.21
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.21
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.2
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.19
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.18
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.18
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.16
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.02
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.01
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.96
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.93
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.93
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.91
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	98.86
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	98.85
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.79
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	98.75
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.68
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	98.66
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.57

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=5.9e-55  Score=398.32  Aligned_cols=257  Identities=46%  Similarity=0.757  Sum_probs=232.9

Q ss_pred             CChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHH
Q 039045           24 DDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVA  103 (295)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  103 (295)
                      ...+++|++||+||+..+++||+|++||+.+||+|++|+++|+|+||++|.+..+++..+.+++..++...|++++.+..
T Consensus        27 ~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~~l~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~  106 (287)
T 3mc4_A           27 DQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGHPDVSADILRQTFDTMLEANPEWSHVLRV  106 (287)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHCGGGHHHHHHHTTTCSSHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhCcHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeE
Q 039045          104 DLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVV  183 (295)
Q Consensus       104 dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~  183 (295)
                      |+.+.+++||++..+..++++|+||+++..||++|++|..++..++..++......++++||+++.||++++|+|+.+++
T Consensus       107 d~~~~~~~DPa~~~~~e~ll~y~G~~al~~yRiah~L~~~g~~~la~~i~~~~~~~~gi~I~p~a~IG~~v~I~hg~gvv  186 (287)
T 3mc4_A          107 DIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLV  186 (287)
T ss_dssp             HHHHHHHHCTTCCCTHHHHHHCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCEECTTCEECSSCEEESCTTCE
T ss_pred             HHHHHhccCcccCCCCEEEEeCHHHHHHHHHHHHHHHHHcCChhHHHHHHhhceeccCeEECCCCEECCCeEEccCCCeE
Confidence            99999999999999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             ECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEE
Q 039045          184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL  263 (295)
Q Consensus       184 IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~  263 (295)
                      ||++++||+||.|+++++|++++...+.++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||+
T Consensus       187 IG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kdVp~~svvvG~PAki  266 (287)
T 3mc4_A          187 VGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARI  266 (287)
T ss_dssp             ECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTEEEETTTTEE
T ss_pred             ECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCCCEEEccCCEE
Confidence            99999999999999999999988888888999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCccccccc
Q 039045          264 VGGKEKTSSNEECPGESMDHTS  285 (295)
Q Consensus       264 i~~~~~~~~~~~~p~~~~~~~~  285 (295)
                      +++..     ...|+..|||.+
T Consensus       267 i~~~~-----~~~p~~~~d~~~  283 (287)
T 3mc4_A          267 IGETG-----CTEPSRVMDQML  283 (287)
T ss_dssp             EEECC-----------------
T ss_pred             eCcCC-----CcCcchhhhhhh
Confidence            99876     567999999984

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=100.00  E-value=2.1e-54  Score=391.91  Aligned_cols=255  Identities=52%  Similarity=0.800  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHH
Q 039045           27 AWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLR  106 (295)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~  106 (295)
                      +++|++||+||+..+++||.|+++++..||+|++|+++|+|+||++|.+..|++..+.+++.+++.++|++++.+.+|+.
T Consensus         3 ~~~w~~~~~ea~~~~~~EP~L~~~l~~~IL~~~~l~~aLa~~la~kl~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~D~~   82 (267)
T 1ssq_A            3 LDVWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIEEAYQSNPSIIDCAACDIQ   82 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSSSHHHHHHHHHHHHHCBTTBCHHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHhcccccCCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECC
Q 039045          107 AARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGE  186 (295)
Q Consensus       107 ~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~  186 (295)
                      +.+++||++.++..+++.|+||++++.||++|++|..++..++..++......++++||+++.||++++|+|+++++||+
T Consensus        83 ~~~~~DPa~~~~~~~l~~~~g~~al~~yR~ah~l~~~~~~~l~~~l~~~~~~~~g~~I~p~a~IG~g~~I~~~~~vvIG~  162 (267)
T 1ssq_A           83 AVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGE  162 (267)
T ss_dssp             HHHHHCTTCCCTHHHHHHCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEESSCTTCEECT
T ss_pred             HHHcCChhhhcccHHHhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHhceeccceEeCCCCEECCCEEECCCCceEECC
Confidence            99999999999999999999999999999999999999998888888777778899999999999999999999999999


Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      +|+||+||+|+++++|++++...+.++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||++++
T Consensus       163 ~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~dVp~~~~v~G~PAr~i~~  242 (267)
T 1ssq_A          163 TSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVSQ  242 (267)
T ss_dssp             TCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEECC-
T ss_pred             eeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccCCCCCCEEEecCcEEecc
Confidence            99999999999999999987777778999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCCcccccccc
Q 039045          267 KEKTSSNEECPGESMDHTSF  286 (295)
Q Consensus       267 ~~~~~~~~~~p~~~~~~~~~  286 (295)
                      ..     ...|+..|||.+.
T Consensus       243 ~~-----~~~~~~~~~~~~~  257 (267)
T 1ssq_A          243 DK-----AAKPAFDMNQYFI  257 (267)
T ss_dssp             --------------------
T ss_pred             CC-----CCCCccchhhhHh
Confidence            75     5689999999864

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=100.00  E-value=4.1e-54  Score=393.44  Aligned_cols=258  Identities=53%  Similarity=0.830  Sum_probs=245.9

Q ss_pred             hHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHH
Q 039045           26 EAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADL  105 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl  105 (295)
                      .+.+|++||+||+..+++||.|++|++..||+|++|+++|+|+||++|.+..|++..+.+++.+++.++|++++.+.+|+
T Consensus        22 ~~~~w~~~~~ea~~~~~~EP~L~~~l~~~IL~~~~l~~aLa~~La~kl~~~~~~~~~~~~~~~~~~~~~P~i~~~i~~D~  101 (289)
T 1t3d_A           22 LEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDI  101 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHTTTCSSHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHhcccccCCCCHHHHHHHHHhccCCcccCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEEC
Q 039045          106 RAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIG  185 (295)
Q Consensus       106 ~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG  185 (295)
                      .+.+++||++.++..+++.|+||++++.||++||+|..++..++..++......++++|++++.||++++|+|+.+++||
T Consensus       102 ~~~~~~DPa~~~~~~~l~~~~G~~al~~yR~ah~l~~~~r~~l~~~l~~~~~~~~g~~I~p~a~IG~gv~I~~g~gvvIG  181 (289)
T 1t3d_A          102 QAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVG  181 (289)
T ss_dssp             HHHHHHCTTCCCSHHHHHHCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEECSCTTCEEC
T ss_pred             HHHHcCCHhHhcccHHHhhcccHHHHHHHHHHHHHHHcChHHHHHHHHHhceeccceEEcCCCEEcCCEEECCCCceEEC
Confidence            99999999999999999999999999999999999999999888888877777889999999999999999999999999


Q ss_pred             CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       186 ~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ++|+||+||+|+++|+|++++...+.++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||+++
T Consensus       182 ~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~~s~v~G~PAr~i~  261 (289)
T 1t3d_A          182 ETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVG  261 (289)
T ss_dssp             TTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEEEE
T ss_pred             CCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccCCCCCCEEEecCCEEeC
Confidence            99999999999999999998776667899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccccccccc
Q 039045          266 GKEKTSSNEECPGESMDHTSFIS  288 (295)
Q Consensus       266 ~~~~~~~~~~~p~~~~~~~~~~~  288 (295)
                      +..     ...|+..|||+++..
T Consensus       262 ~~~-----~~~p~~~~~~~~~~~  279 (289)
T 1t3d_A          262 KPD-----SDKPSMDMDQHFNGI  279 (289)
T ss_dssp             CCS-----SSCHHHHCCCCCCC-
T ss_pred             cCC-----CCCCCcccchhcccc
Confidence            775     568999999997764

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=100.00  E-value=1e-34  Score=268.17  Aligned_cols=188  Identities=33%  Similarity=0.502  Sum_probs=162.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccce
Q 039045           81 TLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF  160 (295)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~  160 (295)
                      ....+.+.+++.+.|++++.+.+|+.+.+++||++..+..++++|+||+++..||++|++|..+.+.++..+.......+
T Consensus        83 ~~~~~~~~~~~~~~pei~~~l~~d~~~~~~~DPa~~~~~e~l~~ypG~~al~~yRlah~L~~~~~~~l~r~l~~~~~~~~  162 (313)
T 3q1x_A           83 LFAHQCVMAILEKLPSIKRTLKTDLIAAYAGDPAAPGLSLIIRCYPGFQAVIVYRIAHVLYECGERYYCREMMESVHSYT  162 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCccccCCCeeEEeCcCHHHHHHHHHHHHHHHcCChhHHHHHHHhceecC
Confidence            34556677788899999999999999999999999999999999999999999999999999998888888887777789


Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC--------CCCCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA--------SGDRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~--------~~~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      +++||+++.||++++|+++++++||++|+||+||.|+++++||+....        ...++++||++|+||+||+|++++
T Consensus       163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv  242 (313)
T 3q1x_A          163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNI  242 (313)
T ss_dssp             CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSC
T ss_pred             CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCc
Confidence            999999999999999999999999999999999999999999875432        123578999999999999999999


Q ss_pred             EECCCCEECCCCEEcCCCCCCcEEE--ccCcEEecCCC
Q 039045          233 KIGEGAKVGAGSVVLIDVPARATAV--GNPARLVGGKE  268 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp~~~~v~--G~PA~~i~~~~  268 (295)
                      +||++|+||+||+|+++||++++++  |+||+++++..
T Consensus       243 ~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~~~  280 (313)
T 3q1x_A          243 IVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKPCT  280 (313)
T ss_dssp             EECSSEEECTTCEECSCBCSSEEC--------------
T ss_pred             EECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEeeCc
Confidence            9999999999999999999999998  99999999865

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=100.00  E-value=2e-34  Score=265.84  Aligned_cols=189  Identities=34%  Similarity=0.450  Sum_probs=168.9

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccc
Q 039045           80 STLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDV  159 (295)
Q Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~  159 (295)
                      ..+..+.+.+++.+.|++++.+..|+.+.+++||++..+..+++.|+||+++..||++|++|..+...++..+.......
T Consensus       109 ~~~~~~~~~~~~~~~p~i~~~l~~di~~~~~~DPa~~s~~e~l~~ypg~~al~~~Riah~l~~~~~~~lar~i~~~~~~~  188 (310)
T 3f1x_A          109 RETASLLAARFISKLPELRRILATDVEAAYYGDPAATCFGEIISCYPAIRAISNYRIAHELLILGVPLIPRFITEMAHSE  188 (310)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCchhcCcceEEEeCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            45566788889999999999999999999999999999999999999999999999999999999888888888877778


Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC---------CCCCCCEECCCCEECCCCEECC
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA---------SGDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~---------~~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ++++||+++.||++++|+|+.+++||++++||+||.|+++|+|++....         ...++++||++|+||+||+|++
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~  268 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILG  268 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEES
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECC
Confidence            9999999999999999999999999999999999999999999987611         2357889999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +++||++|+||+||+|++|||++++++|+|||..+...
T Consensus       269 gv~IGd~a~IGagsvV~~dVp~~svv~GnPAk~~~~~~  306 (310)
T 3f1x_A          269 RVTIGKGATVGGNIWVTENVPAGSRIVQRKNKDELEHH  306 (310)
T ss_dssp             SCEECTTCEECSSCEECSCBCTTCEECCCCCC------
T ss_pred             CcEECCCCEECCCCEECCccCCCcEEECCCcccCCccc
Confidence            99999999999999999999999999999999887654

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.89  E-value=9.1e-23  Score=177.09  Aligned_cols=108  Identities=31%  Similarity=0.458  Sum_probs=75.7

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEEC--CCcEEcCCcEEccCCEECCCCCC----------CCCCCCEECCCCEECCCCE
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIG--ETAVIGNNVSILHHVTLGGTGKA----------SGDRHPKIGDGVLIGAGAT  227 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG--~~~~IG~~v~I~~gv~Igg~~~~----------~~~~~~~IG~~v~IGa~a~  227 (295)
                      +.+++|.++.||++++|++  +++|+  ..++||++|.|+++|+|......          ....+++||++||||++|+
T Consensus        67 ~~~~~g~~~~IG~~~~I~~--~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~  144 (199)
T 3ftt_A           67 FDTDYGWNVKLGKNVYVNT--NCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVA  144 (199)
T ss_dssp             EEESSSTTEEECSSEEECT--TEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCE
T ss_pred             EEEEecCCcEECCCeEECC--CeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCE
Confidence            3444455555555555544  34442  22444555555555544321100          0014689999999999999


Q ss_pred             ECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045          228 ILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       228 I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      |+++++||++|+||+||+|++|||++++++|+|||++++..+
T Consensus       145 I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~~~~~  186 (199)
T 3ftt_A          145 VLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDN  186 (199)
T ss_dssp             ECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCC
T ss_pred             ECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEeeCCh
Confidence            999999999999999999999999999999999999998763

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.89  E-value=1.5e-22  Score=173.99  Aligned_cols=107  Identities=30%  Similarity=0.370  Sum_probs=78.7

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEEC--CCcEEcCCcEEccCCEECCCCCC----------CCCCCCEECCCCEECCCC
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIG--ETAVIGNNVSILHHVTLGGTGKA----------SGDRHPKIGDGVLIGAGA  226 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG--~~~~IG~~v~I~~gv~Igg~~~~----------~~~~~~~IG~~v~IGa~a  226 (295)
                      ++.++++.++.||++++|.+  +++|.  .+++||++|.|+++|+|......          ....+++||++||||++|
T Consensus        66 p~~~~~g~~v~IG~~~~i~~--~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~  143 (185)
T 2p2o_A           66 NFRCDYGYNIHVGENFFMNF--DGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRA  143 (185)
T ss_dssp             CEEESCSTTEEECTTEEECS--SEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTC
T ss_pred             cEEEEecCCEEECCeeEEcC--CeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCC
Confidence            34455566666666666665  44442  34555666666666655321100          001368999999999999


Q ss_pred             EECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          227 TILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       227 ~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      +|+++++||++|+||+||+|++|||++++++|+|||++++.
T Consensus       144 ~I~~gv~IG~~~vIgagsvV~~~vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          144 VINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             EECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEC
T ss_pred             EECCCCEECCCCEECCCCEECCCCCCCcEEEcccCEEeeec
Confidence            99999999999999999999999999999999999999864

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.88  E-value=2.6e-22  Score=175.00  Aligned_cols=108  Identities=25%  Similarity=0.315  Sum_probs=76.2

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC----CCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA----SGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~----~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ++.||+++.|+.++.|.+...++||++|.||++|.|....+.......    ....+++||++||||++|+|+++++||+
T Consensus        75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~  154 (203)
T 1krr_A           75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  154 (203)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence            344555555555555544444555555555555555432211100000    0114689999999999999999999999


Q ss_pred             CCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          237 GAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +|+||+||+|++|||++++++|+|||++++.+
T Consensus       155 ~~vIgagsvV~~dvp~~~vv~G~PArvik~~~  186 (203)
T 1krr_A          155 NSVIGAGSIVTKDIPPNVVAAGVPCRVIREIN  186 (203)
T ss_dssp             TCEECTTCEECSCBCTTEEEETTTTEEEEECC
T ss_pred             CCEECCCCEECCCcCCCcEEEccCcEEeccCC
Confidence            99999999999999999999999999999875

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.88  E-value=5.2e-22  Score=170.85  Aligned_cols=108  Identities=30%  Similarity=0.435  Sum_probs=76.8

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCC----CCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK----ASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~----~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ++.||+++.|+.+++|.+...++||++|.||++|.|.+..+......    .....+++||++||||++|+|+++++||+
T Consensus        76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  155 (188)
T 3srt_A           76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD  155 (188)
T ss_dssp             TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred             CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence            34555555555555555444555555555555555543222110000    00013789999999999999999999999


Q ss_pred             CCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          237 GAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +|+||+||+|++|||++++++|+|||++++.+
T Consensus       156 ~~vIgagsvV~~dvp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          156 NVVIGAGSVVTKDIPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             SEEECTTCEECSCBCSSEEEETTTTEEEEECC
T ss_pred             CCEECCCCEECcccCCCCEEEccCCEEeccCC
Confidence            99999999999999999999999999999764

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.87  E-value=7.8e-22  Score=169.11  Aligned_cols=109  Identities=29%  Similarity=0.396  Sum_probs=80.9

Q ss_pred             cccceeeEeCCCceecCceEEcCCcCeEEC--CCcEEcCCcEEccCCEECCCCC----------CCCCCCCEECCCCEEC
Q 039045          156 ISDVFAVDIHPAAKIGKGILFDHATGVVIG--ETAVIGNNVSILHHVTLGGTGK----------ASGDRHPKIGDGVLIG  223 (295)
Q Consensus       156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG--~~~~IG~~v~I~~gv~Igg~~~----------~~~~~~~~IG~~v~IG  223 (295)
                      +..++.++++.++.||++++|.+  +++|.  ..++||++|.|+++|+|.....          .....+++||++||||
T Consensus        61 I~~~~~~~~g~~v~IG~~~~I~~--~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig  138 (182)
T 1ocx_A           61 IEPTFRCDYGYNIFLGNNFFANF--DCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIG  138 (182)
T ss_dssp             ECSCEEESSSTTEEECSSEEECS--SEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEEC
T ss_pred             EeCCEEEEeCCCEEECCCcEEeC--CeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEEC
Confidence            33444455666666666666665  44442  3456666666666666642110          0002468999999999


Q ss_pred             CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++|+|+++++||++|+||+||+|++|||++++++|+|||++++
T Consensus       139 ~~a~I~~gv~IG~~~vIgagsvV~~dip~~~vv~G~Pa~~i~~  181 (182)
T 1ocx_A          139 GRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             CCCEECCCcEECCCCEECCCCEECCcCCCCcEEEccccEEecc
Confidence            9999999999999999999999999999999999999999975

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.86  E-value=3e-21  Score=166.97  Aligned_cols=111  Identities=28%  Similarity=0.382  Sum_probs=83.9

Q ss_pred             cccceeeEeCCCceecCceEEcCCcCeEE--CCCcEEcCCcEEccCCEECCCCCC----------CCCCCCEECCCCEEC
Q 039045          156 ISDVFAVDIHPAAKIGKGILFDHATGVVI--GETAVIGNNVSILHHVTLGGTGKA----------SGDRHPKIGDGVLIG  223 (295)
Q Consensus       156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~I--G~~~~IG~~v~I~~gv~Igg~~~~----------~~~~~~~IG~~v~IG  223 (295)
                      +..++.+++++++.||++++|++  +++|  +..++||++|.|+++|+|......          ....+++||++||||
T Consensus        65 I~~p~~~~ig~~v~IG~~~~I~~--~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG  142 (195)
T 3nz2_A           65 VQPPFHCEFGKTIRIGDHTFINM--NVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIG  142 (195)
T ss_dssp             ECSSEEESCSTTEEECTTCEECT--TEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEEC
T ss_pred             EcCCeEEEeCCCeEECCCcEECc--CCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEc
Confidence            44455566666777777777766  5555  333466666666666665432110          012367999999999


Q ss_pred             CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||+|+++++||++|+||+||+|++|||++++++|+|||++++..
T Consensus       143 ~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~~  187 (195)
T 3nz2_A          143 GNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLK  187 (195)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEECC
T ss_pred             CCCEECCCCEECCCCEECCCCEEccccCCCcEEEccCCEEecccC
Confidence            999999999999999999999999999999999999999999875

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.86  E-value=9.6e-22  Score=169.29  Aligned_cols=110  Identities=29%  Similarity=0.422  Sum_probs=79.2

Q ss_pred             ccceeeEeCCCceecCceEEcCCcCeEECC--CcEEcCCcEEccCCEECCCCCCC----------CCCCCEECCCCEECC
Q 039045          157 SDVFAVDIHPAAKIGKGILFDHATGVVIGE--TAVIGNNVSILHHVTLGGTGKAS----------GDRHPKIGDGVLIGA  224 (295)
Q Consensus       157 ~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~--~~~IG~~v~I~~gv~Igg~~~~~----------~~~~~~IG~~v~IGa  224 (295)
                      ..++.+++++++.||++++|++  +++|++  .++||++|.|+++|+|.......          ...+++||++||||+
T Consensus        68 ~~~~~~~~g~~v~IG~~~~I~~--~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~  145 (190)
T 3hjj_A           68 NPDFRCDYGYNIHVGKSFFANF--NCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGG  145 (190)
T ss_dssp             CSSCEESSSTTEEECTTCEECT--TCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECT
T ss_pred             CCCEEEEeCCceEECCceeeCC--CeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECC
Confidence            3334444555566666666655  444443  34555555555555553221100          024689999999999


Q ss_pred             CCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +|+|+++++||++|+||+||+|++|||++++++|+|||++++.+
T Consensus       146 ~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          146 GAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECC
T ss_pred             CCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEeccCC
Confidence            99999999999999999999999999999999999999999764

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.82  E-value=8.1e-20  Score=156.82  Aligned_cols=106  Identities=34%  Similarity=0.471  Sum_probs=78.2

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC-------------------CCCCCEECCCCEE
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS-------------------GDRHPKIGDGVLI  222 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~-------------------~~~~~~IG~~v~I  222 (295)
                      +.||+++.|+++++|.+  +++||++|.|+++|.|+++++|+......                   ..++++||++|+|
T Consensus        34 ~~IG~~~~Ig~~~~I~~--~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~I  111 (192)
T 3mqg_A           34 AEIGEGCSLGQNVFVGN--RVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL  111 (192)
T ss_dssp             CEECTTCEECTTCEECS--SCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEE
T ss_pred             cEECCCCEECCCEEECC--ceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEE
Confidence            44555555555555544  45556555555555555555444332110                   1146899999999


Q ss_pred             CCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045          223 GAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       223 Ga~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      |++++|+++++||++|+||++|+|++++|++++++|+|||++++...
T Consensus       112 G~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~~~~~  158 (192)
T 3mqg_A          112 GANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSR  158 (192)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEBCT
T ss_pred             CCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccCCEEEEeecc
Confidence            99999999999999999999999999999999999999999997653

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.80  E-value=3.8e-19  Score=155.99  Aligned_cols=91  Identities=29%  Similarity=0.523  Sum_probs=69.2

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG  243 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag  243 (295)
                      |++++.||++|+|..  +++|+++++||++|.|+++++|+        .+++||++|+||++++|.++++||++|+||+|
T Consensus       126 i~~~~~IG~~~~I~~--~~~I~~~~~Ig~~~~i~~~~~i~--------~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igag  195 (220)
T 4ea9_A          126 INADSWIGDLAIINT--GAVVDHDCRLGAACHLGPASALA--------GGVSVGERAFLGVGARVIPGVTIGADTIVGAG  195 (220)
T ss_dssp             ECTTCEECTTCEECT--TCEECTTCEECTTCEECTTCEEC--------SSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             ECCCCEECCCCEECC--CCEECCCCEECCCCEECCCCEEc--------CCCEECCCCEECCCCEEcCCcEECCCCEECCC
Confidence            333444444444433  44555555555555555555554        36999999999999999999999999999999


Q ss_pred             CEEcCCCCCCcEEEccCcEEe
Q 039045          244 SVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       244 svV~~~Vp~~~~v~G~PA~~i  264 (295)
                      ++|.+|+|++++++|+|||+.
T Consensus       196 svv~~~v~~~~~~~G~Pa~i~  216 (220)
T 4ea9_A          196 GVVVRDLPDSVLAIGVPAKIK  216 (220)
T ss_dssp             CEECSCBCTTCEEETTTTEEC
T ss_pred             CEEccccCCCcEEEEeCCEEe
Confidence            999999999999999999943

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.80  E-value=2.2e-19  Score=157.10  Aligned_cols=107  Identities=28%  Similarity=0.304  Sum_probs=79.5

Q ss_pred             eeEeCCCceecCceEEcC--------------CcCeEECCCcEEcCCcEEccCCEECCCCC-------------------
Q 039045          161 AVDIHPAAKIGKGILFDH--------------ATGVVIGETAVIGNNVSILHHVTLGGTGK-------------------  207 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~--------------~~~v~IG~~~~IG~~v~I~~gv~Igg~~~-------------------  207 (295)
                      ++.+++++.||++++|+.              ...+.+++++.||++|.|+++|+|...+.                   
T Consensus        18 ~vv~~~~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~   97 (212)
T 3eev_A           18 QQVTNPNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDND   97 (212)
T ss_dssp             GTCCCTTEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCG
T ss_pred             heeeCCCeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeeccc
Confidence            455677777777777751              11223444555666666666655521110                   


Q ss_pred             --------CCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          208 --------ASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       208 --------~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                              .....+++||++|+||++|+|+++++||++|+||+||+|++|||++++++|+|||++++.
T Consensus        98 ~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv~G~PAk~i~~~  165 (212)
T 3eev_A           98 NFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHIKFR  165 (212)
T ss_dssp             GGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             ccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEEecc
Confidence                    011346899999999999999999999999999999999999999999999999999864

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.79  E-value=1e-18  Score=155.33  Aligned_cols=59  Identities=37%  Similarity=0.624  Sum_probs=54.0

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKT  270 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~~  270 (295)
                      .+++||++|+||.+|+|+++++||++|+|++|++|.+++|++++++|+|||++++.+..
T Consensus       164 ~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~~G~Pak~i~~~~~~  222 (240)
T 3r8y_A          164 KPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIKEIDEK  222 (240)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEC---
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEEEccCCEEEecCCHH
Confidence            45899999999999999999999999999999999999999999999999999987643

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.79  E-value=2.9e-19  Score=157.20  Aligned_cols=104  Identities=29%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             eEeCCCceecCceEE-------------cCCcCeEECCCcEEcCCcEEccCCEEC---CCCC------------------
Q 039045          162 VDIHPAAKIGKGILF-------------DHATGVVIGETAVIGNNVSILHHVTLG---GTGK------------------  207 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I-------------~~~~~v~IG~~~~IG~~v~I~~gv~Ig---g~~~------------------  207 (295)
                      +.+++++.||++++|             ++  +++||++++||++|.|+++++|.   +...                  
T Consensus        30 ~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~--~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~  107 (220)
T 4hur_A           30 TITNENILVGEYSYYDSKRGESFEDQVLYH--YEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKY  107 (220)
T ss_dssp             GCCSTTEEECTTCEEECSSSCCGGGGEESC--CTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGG
T ss_pred             eEECCCEEECCCeEECCcCCcccCCeEEeC--CCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeeccccccc
Confidence            445555566555554             44  45566667777777777777752   1100                  


Q ss_pred             ------CCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          208 ------ASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       208 ------~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                            .....+++||++|+||++|+|+++++||++|+||+||+|++|||++++++|+|||++++.
T Consensus       108 ~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~r  173 (220)
T 4hur_A          108 MPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  173 (220)
T ss_dssp             CCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             ccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeehhc
Confidence                  001346899999999999999999999999999999999999999999999999999864

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.78  E-value=1.1e-19  Score=167.65  Aligned_cols=175  Identities=15%  Similarity=0.137  Sum_probs=111.4

Q ss_pred             CccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHH
Q 039045           19 THAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALR   98 (295)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~   98 (295)
                      +.+.....+++++.+++|.++.+++||++.++++ .++.||++++.+.||+||+|......                .+.
T Consensus        89 ~~~~~~~~pei~~~l~~d~~~~~~~DPa~~~~~e-~l~~ypG~~al~~yRlah~L~~~~~~----------------~l~  151 (313)
T 3q1x_A           89 VMAILEKLPSIKRTLKTDLIAAYAGDPAAPGLSL-IIRCYPGFQAVIVYRIAHVLYECGER----------------YYC  151 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHH-HHHHCHHHHHHHHHHHHHHHHHTTCC----------------SHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHcCCccccCCCe-eEEeCcCHHHHHHHHHHHHHHHcCCh----------------hHH
Confidence            3445566788999999999999999999999775 68899999999999999999543211                001


Q ss_pred             HHHHHHHHHHh--ccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEE
Q 039045           99 AAAVADLRAAR--VRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILF  176 (295)
Q Consensus        99 ~~~~~dl~~~~--~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I  176 (295)
                      ..+........  .-.|.+                   .+              .-...+....++.||+++.||++|.|
T Consensus       152 r~l~~~~~~~~gv~I~p~a-------------------~I--------------G~~v~I~~g~gvvIG~~~~IG~~v~I  198 (313)
T 3q1x_A          152 REMMESVHSYTSIDIHPGA-------------------SI--------------KGHFFIDHGVGVVIGETAIIGEWCRI  198 (313)
T ss_dssp             HHHHHHHHHHHCCEECTTC-------------------EE--------------CSSCEESSCTTCEECTTCEECSSCEE
T ss_pred             HHHHHhceecCCeEECCCC-------------------EE--------------CCCEEECCCCceEECCCcEECCCCEE
Confidence            11111100001  011111                   00              00223444457889999999999999


Q ss_pred             cCCcCeEECCCc----------------EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          177 DHATGVVIGETA----------------VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       177 ~~~~~v~IG~~~----------------~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ++  +++||.++                +||++|+|+.+++|.+        +++||++|+||+|++|..++..+..++|
T Consensus       199 ~~--~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg--------gv~IG~~a~IGagsvV~~dVp~gs~vvi  268 (313)
T 3q1x_A          199 YQ--SVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG--------NIIVGSHVRIGANCWIDRDVDSNQTVYI  268 (313)
T ss_dssp             CT--TCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEES--------SCEECSSEEECTTCEECSCBCSSEEC--
T ss_pred             CC--CcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECC--------CcEECCCCEECCCCEECCCcCCCCEEEE
Confidence            88  77777643                7777777777777764        6899999999999999999777777666


Q ss_pred             -CCCCEEcCCCCCC
Q 039045          241 -GAGSVVLIDVPAR  253 (295)
Q Consensus       241 -gagsvV~~~Vp~~  253 (295)
                       |..+.+.+++++.
T Consensus       269 ~G~PAkvik~~~~~  282 (313)
T 3q1x_A          269 SEHPTHFVKPCTTK  282 (313)
T ss_dssp             --------------
T ss_pred             cCCCcEEEeeCccc
Confidence             8999999887754

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.78  E-value=9.6e-19  Score=151.69  Aligned_cols=57  Identities=35%  Similarity=0.444  Sum_probs=54.5

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .+++||++|+||++|+|+++++||++|+||++|+|.+++|++++++|+|||++++..
T Consensus       133 ~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~~G~Pa~~i~~~~  189 (205)
T 3vbi_A          133 GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARK  189 (205)
T ss_dssp             CCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECC
T ss_pred             CCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEEEccCCEEeeech
Confidence            468999999999999999999999999999999999999999999999999999764

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.77  E-value=5e-18  Score=153.19  Aligned_cols=56  Identities=39%  Similarity=0.496  Sum_probs=53.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +++||++|+||++++|+++++||++|+||+||+|++|||++++++|+|||+++...
T Consensus       170 ~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~~G~PA~~i~~~~  225 (273)
T 3fs8_A          170 GVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREICSIR  225 (273)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEGG
T ss_pred             CcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEEEecCcEEecccc
Confidence            69999999999999999999999999999999999999999999999999999654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.77  E-value=4.1e-19  Score=160.57  Aligned_cols=178  Identities=16%  Similarity=0.190  Sum_probs=126.9

Q ss_pred             CCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHH
Q 039045           10 SPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLD   89 (295)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~   89 (295)
                      +++..+++.+.+.....+++++.+++|.++.+++||++.++++ .++.||+|++.+.||+||+|.....           
T Consensus        54 ~~~~~~~~~~~~~~~~~p~i~~~~~~D~~~~~~~DPa~~~~~~-~l~~~~g~~al~~yR~ah~l~~~~~-----------  121 (267)
T 1ssq_A           54 MPAISLREIIEEAYQSNPSIIDCAACDIQAVRHRDPAVELWST-PLLYLKGFHAIQSYRITHYLWNQNR-----------  121 (267)
T ss_dssp             BCHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHCTTCCCTHH-HHHHCHHHHHHHHHHHHHHHHTTTC-----------
T ss_pred             CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCChhhhcccH-HHhhhchHHHHHHHHHHHHHHHhHH-----------
Confidence            4555566677777888889999999999999999999999876 4888999999999999999954321           


Q ss_pred             hccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCC
Q 039045           90 TFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPA  167 (295)
Q Consensus        90 ~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~  167 (295)
                           +.+...+.......+.  -.|.+                   +              ..-+..+.+..++.||++
T Consensus       122 -----~~l~~~l~~~~~~~~g~~I~p~a-------------------~--------------IG~g~~I~~~~~vvIG~~  163 (267)
T 1ssq_A          122 -----KSLALYLQNQISVAFDVDIHPAA-------------------K--------------IGHGIMFDHATGIVVGET  163 (267)
T ss_dssp             -----HHHHHHHHHHHHHHHSCEECTTC-------------------E--------------ECSSCEESSCTTCEECTT
T ss_pred             -----HHHHHHHHHhceeccceEeCCCC-------------------E--------------ECCCEEECCCCceEECCe
Confidence                 1111111111001111  11111                   0              011233444457889999


Q ss_pred             ceecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC-
Q 039045          168 AKIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA-  238 (295)
Q Consensus       168 a~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~-  238 (295)
                      ++||++|.|.+  +++||.+        ++||++|.|+.+++|.+        +++||++|.||+|++|..+  |.+++ 
T Consensus       164 ~~IG~~v~I~~--gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~--------gv~IG~~a~IGagsvV~~d--Vp~~~~  231 (267)
T 1ssq_A          164 SVIENDVSILQ--GVTLGGTGKESGDRHPKVREGVMIGAGAKILG--------NIEVGKYAKIGANSVVLNP--VPEYAT  231 (267)
T ss_dssp             CEECTTCEECT--TCEEECCSSSCSSCSCEECTTCEECTTCEEES--------SCEECTTCEECTTCEECSC--BCTTCE
T ss_pred             eEECCCCEEcC--CcEECCCcccCCCCCeEECCCeEEcCCCEEeC--------CcEECCCCEECCCCEEccC--CCCCCE
Confidence            99999999998  8888876        78999999999999874        6899999999999999887  45665 


Q ss_pred             EECCCCEEcCC
Q 039045          239 KVGAGSVVLID  249 (295)
Q Consensus       239 ~IgagsvV~~~  249 (295)
                      ++|..+.+.+.
T Consensus       232 v~G~PAr~i~~  242 (267)
T 1ssq_A          232 AAGVPARIVSQ  242 (267)
T ss_dssp             EETTTTEECC-
T ss_pred             EEecCcEEecc
Confidence            45666666554

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.77  E-value=2.4e-19  Score=163.31  Aligned_cols=179  Identities=16%  Similarity=0.166  Sum_probs=120.2

Q ss_pred             CCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHH
Q 039045            9 PSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL   88 (295)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~   88 (295)
                      .+|+..+.+.+.+.....++|++.+++|.++.+++||++.++++ .+|.||++++.+.||++|+|.....          
T Consensus        80 ~~~~~~~~~~~~~~~~~~p~i~~~~~~d~~~~~~~DPa~~~~~e-~ll~y~G~~al~~yRiah~L~~~g~----------  148 (287)
T 3mc4_A           80 DVSADILRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMD-PVLYLKGFHAIQTHRLAHWLYKQGR----------  148 (287)
T ss_dssp             SSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHCTTCCCTHH-HHHHCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             CCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCcccCCCCE-EEEeCHHHHHHHHHHHHHHHHHcCC----------
Confidence            45666677777788888889999999999999999999999877 5889999999999999999943311          


Q ss_pred             HhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCC
Q 039045           89 DTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHP  166 (295)
Q Consensus        89 ~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~  166 (295)
                            +.+...+.........  -.|.+                   +              ..-+..+.+..++.||+
T Consensus       149 ------~~la~~i~~~~~~~~gi~I~p~a-------------------~--------------IG~~v~I~hg~gvvIG~  189 (287)
T 3mc4_A          149 ------KDFAYYLQSRSSSIFQTDIHPAA-------------------R--------------LGSGLFLDHATGLVVGE  189 (287)
T ss_dssp             ------HHHHHHHHHHHHHHTCCEECTTC-------------------E--------------ECSSCEEESCTTCEECT
T ss_pred             ------hhHHHHHHhhceeccCeEECCCC-------------------E--------------ECCCeEEccCCCeEECC
Confidence                  1111111111000000  00110                   0              00022333345677888


Q ss_pred             CceecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          167 AAKIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      +++||++|.|++  +++||.+        ++||+||.|+.+++|.+        +++||++|.||+|++|.+++  .+++
T Consensus       190 ~~~IGd~v~I~~--gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~--------gv~IG~~a~IGagsvV~kdV--p~~s  257 (287)
T 3mc4_A          190 TAVVEDNVSILH--GVTLGGTGKSSGDRHPKIRQGVLIGAGAKILG--------NIQVGQCSKIAAGSVVLKSV--PHNV  257 (287)
T ss_dssp             TCEECSSCEEET--TCEEEC-----CCCSCEECTTCEECTTCEEES--------SCEECTTCEECTTCEECSCB--CTTE
T ss_pred             CeEECCCCEEcC--CCEEcCCcccCCCcCCEECCCCEECCCCEECC--------CcEECCCCEECCCCEEcccc--CCCC
Confidence            888888888887  7777775        78888888888888764        57888888888888887653  4443


Q ss_pred             -EECCCCEEcCC
Q 039045          239 -KVGAGSVVLID  249 (295)
Q Consensus       239 -~IgagsvV~~~  249 (295)
                       ++|..+.+.+.
T Consensus       258 vvvG~PAkii~~  269 (287)
T 3mc4_A          258 TVAGVPARIIGE  269 (287)
T ss_dssp             EEETTTTEEEEE
T ss_pred             EEEccCCEEeCc
Confidence             45555666544

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.76  E-value=2.5e-18  Score=148.30  Aligned_cols=53  Identities=23%  Similarity=0.503  Sum_probs=50.4

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      .+++||++|+||++++|.++++||++|+||+|++|.+|+|++++++|+|||++
T Consensus       142 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          142 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM  194 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCCCC
T ss_pred             CCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCCEEEeeccEEC
Confidence            36899999999999999999999999999999999999999999999999864

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.76  E-value=1.8e-18  Score=155.09  Aligned_cols=107  Identities=30%  Similarity=0.479  Sum_probs=83.6

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCc---------EEccCCEECCCCCC-----------------CCCCCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNV---------SILHHVTLGGTGKA-----------------SGDRHP  214 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v---------~I~~gv~Igg~~~~-----------------~~~~~~  214 (295)
                      .+.||+++.|+++++|.++..++||+++.||.++         .||++|+||.....                 ....++
T Consensus        85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v  164 (252)
T 3jqy_B           85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDI  164 (252)
T ss_dssp             EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCE
T ss_pred             eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCe
Confidence            4568888888888888776677777776666533         33444444432211                 112347


Q ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       215 ~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      +||++|+||++|+|.++++||++|+||+||+|++|||++++++|+||+++++.
T Consensus       165 ~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  217 (252)
T 3jqy_B          165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIKRN  217 (252)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             EEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEEccC
Confidence            99999999999999999999999999999999999999999999999999874

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.75  E-value=1.1e-18  Score=159.20  Aligned_cols=178  Identities=18%  Similarity=0.219  Sum_probs=123.7

Q ss_pred             CCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHH
Q 039045            9 PSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL   88 (295)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~   88 (295)
                      .+++..+.+.+.+.....++|++.+++|.++.+++||++.++++. +|.+|+|++.+.||+||+|+....          
T Consensus        73 ~~~~~~~~~~~~~~~~~~P~i~~~i~~D~~~~~~~DPa~~~~~~~-l~~~~G~~al~~yR~ah~l~~~~r----------  141 (289)
T 1t3d_A           73 IMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTP-LLYLKGFHALQAYRIGHWLWNQGR----------  141 (289)
T ss_dssp             SSCHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHCTTCCCSHHH-HHHCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred             cCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCHhHhcccHH-HhhcccHHHHHHHHHHHHHHHcCh----------
Confidence            355556777777888888999999999999999999999997764 888999999999999999943211          


Q ss_pred             HhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCC
Q 039045           89 DTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHP  166 (295)
Q Consensus        89 ~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~  166 (295)
                            +.+...+.......+.  -.|.+                   ++              .-+..+....++.||+
T Consensus       142 ------~~l~~~l~~~~~~~~g~~I~p~a-------------------~I--------------G~gv~I~~g~gvvIG~  182 (289)
T 1t3d_A          142 ------RALAIFLQNQVSVTFQVDIHPAA-------------------KI--------------GRGIMLDHATGIVVGE  182 (289)
T ss_dssp             ------HHHHHHHHHHHHHHHSCEECTTC-------------------EE--------------CSSCEECSCTTCEECT
T ss_pred             ------HHHHHHHHHhceeccceEEcCCC-------------------EE--------------cCCEEECCCCceEECC
Confidence                  1111111111000111  11111                   00              0122333445788899


Q ss_pred             CceecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          167 AAKIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA  238 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~  238 (295)
                      ++.||++|.|.+  +++||.+        ++||++|.|+.+++|.+        +++||++|.||+|++|..+  |.+++
T Consensus       183 ~~~IG~~v~I~~--gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilg--------gv~IG~~a~IGagsvV~~d--Vp~~s  250 (289)
T 1t3d_A          183 TAVIENDVSILQ--SVTLGGTGKSGGDRHPKIREGVMIGAGAKILG--------NIEVGRGAKIGAGSVVLQP--VPPHT  250 (289)
T ss_dssp             TCEECSSCEECT--TCEEECCSSSCSSCSCEECTTCEECTTCEEES--------SCEECTTCEECTTCEECSC--BCTTC
T ss_pred             CcEECCCCEEcC--CcEECCCccccCCCCeEECCCeEECCCCEEec--------CcEECCCCEECCCCEEccC--CCCCC
Confidence            999999999988  7888864        78899999998888874        6899999999999999887  44554


Q ss_pred             -EECCCCEEcC
Q 039045          239 -KVGAGSVVLI  248 (295)
Q Consensus       239 -~IgagsvV~~  248 (295)
                       ++|..+.+.+
T Consensus       251 ~v~G~PAr~i~  261 (289)
T 1t3d_A          251 TAAGVPARIVG  261 (289)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEEecCCEEeC
Confidence             3455555544

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.75  E-value=5.3e-18  Score=154.27  Aligned_cols=103  Identities=27%  Similarity=0.427  Sum_probs=77.2

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||++++|++  +++||+++.||++|.|++++.|++........+++||++|+||++|+|+++++||++|+||+||+|
T Consensus       133 ~~~IG~~~~I~~--~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV  210 (276)
T 3gos_A          133 GAFVDEGTMVDT--WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFI  210 (276)
T ss_dssp             TCEECTTCEECT--TEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CeEECCCCEECC--CCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            444444555544  556666666666666666666654322222357999999999999999999999999999999999


Q ss_pred             cC---------------CCCCCcEE-Ecc-C----------cEEecCCCCCC
Q 039045          247 LI---------------DVPARATA-VGN-P----------ARLVGGKEKTS  271 (295)
Q Consensus       247 ~~---------------~Vp~~~~v-~G~-P----------A~~i~~~~~~~  271 (295)
                      ++               +||+++++ .|+ |          |+++++.+..+
T Consensus       211 ~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~iik~~~~~~  262 (276)
T 3gos_A          211 GQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKT  262 (276)
T ss_dssp             CTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEEECCC--
T ss_pred             CCCcEEccccccceeccccCCCcEEECCCccCCCCcccccccEEEEEcChhh
Confidence            98               89999999 596 9          99999876443

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.74  E-value=7.3e-18  Score=147.44  Aligned_cols=107  Identities=22%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             eEeCCCceecCceEEcC-CcCeEECCCc---------------EEcCCcEEccCCEECCCCC-----------CCCCCCC
Q 039045          162 VDIHPAAKIGKGILFDH-ATGVVIGETA---------------VIGNNVSILHHVTLGGTGK-----------ASGDRHP  214 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~-~~~v~IG~~~---------------~IG~~v~I~~gv~Igg~~~-----------~~~~~~~  214 (295)
                      +.||+++.|++++.|.. +..++||++|               +||++|.|+++++|.+...           .....++
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            66777777766666643 1235555554               3455555555555553210           0112357


Q ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE-ccCcEEecCCC
Q 039045          215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGGKE  268 (295)
Q Consensus       215 ~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~-G~PA~~i~~~~  268 (295)
                      +||++|+||++++|+++++||++|+||++|+|++++|++++++ |+|||++++..
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~~aG~Pa~~i~~~~  193 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENI  193 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCEEETTTTEEEECSE
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEEEcccCCEEECCCc
Confidence            9999999999999999999999999999999999999999999 99999999753

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.73  E-value=2e-17  Score=153.06  Aligned_cols=100  Identities=26%  Similarity=0.399  Sum_probs=75.9

Q ss_pred             eecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          169 KIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       169 ~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      .||++++|++  +++||++|.||++|.|+++++|++........+++||++|+||++|+|+++++||++|+||+|++|.+
T Consensus       176 ~IG~~~~I~~--~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          176 YVDEGTMVDT--WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             EECTTCEECT--TEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEEcc--ceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            4444444444  55666666666666666666665433322334799999999999999999999999999999999999


Q ss_pred             ---------------CCCCCcEE-Ecc-C----------cEEecCCCCC
Q 039045          249 ---------------DVPARATA-VGN-P----------ARLVGGKEKT  270 (295)
Q Consensus       249 ---------------~Vp~~~~v-~G~-P----------A~~i~~~~~~  270 (295)
                                     +||+++++ +|+ |          |+++++.+..
T Consensus       254 ~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP~~~g~~~~~~A~iik~~~~~  302 (316)
T 3tk8_A          254 STKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVIVKKVDAK  302 (316)
T ss_dssp             TCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEEECCC-
T ss_pred             CeeecccccccccccEeCCCCEEECCCCcCCcccccccceEEEEECCcc
Confidence                           89999999 596 9          9999987643

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.73  E-value=5.3e-18  Score=156.25  Aligned_cols=60  Identities=7%  Similarity=0.040  Sum_probs=52.0

Q ss_pred             ccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcc
Q 039045           15 LTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCS   75 (295)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~   75 (295)
                      ....+.+.....+.+++.+++|+++++++||++.++++ .+|.||++++.+.||++|+|..
T Consensus       112 ~~~~~~~~~~~~p~i~~~l~~di~~~~~~DPa~~s~~e-~l~~ypg~~al~~~Riah~l~~  171 (310)
T 3f1x_A          112 ASLLAARFISKLPELRRILATDVEAAYYGDPAATCFGE-IISCYPAIRAISNYRIAHELLI  171 (310)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTCCCHHH-HHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHhcCCchhcCcce-EEEeCcCHHHHHHHHHHHHHHH
Confidence            33455667778899999999999999999999999775 6889999999999999999943

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.72  E-value=2.2e-17  Score=145.34  Aligned_cols=56  Identities=36%  Similarity=0.568  Sum_probs=53.7

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .+++||++|+||++|+|+++++||++|+||++|+|++|||++++++|+||+++++.
T Consensus       117 g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i~~r  172 (219)
T 4e8l_A          117 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  172 (219)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEeeccc
Confidence            46899999999999999999999999999999999999999999999999999864

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.72  E-value=4.4e-17  Score=140.26  Aligned_cols=56  Identities=21%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~  267 (295)
                      ..++||++|+||++|+|+++++||++|+||+||+|.++  +|++++++|+||+...+.
T Consensus       101 ~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~~~~~  158 (194)
T 3tv0_A          101 QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQT  158 (194)
T ss_dssp             CCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCEEEEC
T ss_pred             eeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEEeecc
Confidence            34678999999999999999999999999999999999  999999999999865443

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.71  E-value=2.7e-17  Score=140.27  Aligned_cols=108  Identities=20%  Similarity=0.278  Sum_probs=76.4

Q ss_pred             eeEeCCCceecCceEEcCCc-CeEECCCcEEcCCcEE-----------ccCCEECCCCCCCC---CCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT-GVVIGETAVIGNNVSI-----------LHHVTLGGTGKASG---DRHPKIGDGVLIGAG  225 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~-~v~IG~~~~IG~~v~I-----------~~gv~Igg~~~~~~---~~~~~IG~~v~IGa~  225 (295)
                      ++.||+++.|++++.|.... .++||++|.|+++|.|           +.+++||.......   -.+++||++|+||++
T Consensus        33 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~  112 (187)
T 3r3r_A           33 DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMG  112 (187)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred             ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCCCEECCC
Confidence            45566666666666554311 2356666655555555           22333332211110   134799999999999


Q ss_pred             CEECCCCEECCCCEECCCCEEc--CCCCCCcEEEccCcEEecCCC
Q 039045          226 ATILGNVKIGEGAKVGAGSVVL--IDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       226 a~I~~~v~IG~~~~IgagsvV~--~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      ++|.++++||++|+||++++|.  +++|++++++|+||+++++..
T Consensus       113 ~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~  157 (187)
T 3r3r_A          113 SIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLS  157 (187)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECC
T ss_pred             CEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCC
Confidence            9999999999999999999999  789999999999999998764

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.71  E-value=6.5e-17  Score=148.97  Aligned_cols=100  Identities=28%  Similarity=0.427  Sum_probs=76.9

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||++++|++  +++||+++.||++|.|++++.|++........+++||++|+||++|+|+++++||++|+||+|++|
T Consensus       158 ~~~IG~~~~I~~--~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV  235 (304)
T 3eg4_A          158 GAYVDKGAMIDT--WATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFI  235 (304)
T ss_dssp             TCEECTTCEECT--TEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCEECCCcEEcC--CcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEE
Confidence            444444444444  556666666666666666666655333333456999999999999999999999999999999999


Q ss_pred             c---------------CCCCCCcEEE----------ccC-------cEEecCCC
Q 039045          247 L---------------IDVPARATAV----------GNP-------ARLVGGKE  268 (295)
Q Consensus       247 ~---------------~~Vp~~~~v~----------G~P-------A~~i~~~~  268 (295)
                      +               ++||++++++          |+|       |+++++.+
T Consensus       236 ~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~G~P~g~~~~~A~iik~~~  289 (304)
T 3eg4_A          236 GKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVKRAD  289 (304)
T ss_dssp             CTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCTTSSCCCEEEEEEEEEECC
T ss_pred             cCCeEECccceeeeccCEeCCCCEEecCcEecCCCCCCcCcccccceEEEEEcc
Confidence            9               6799999999          999       99999865

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.71  E-value=5.9e-17  Score=145.60  Aligned_cols=107  Identities=22%  Similarity=0.235  Sum_probs=80.8

Q ss_pred             eeeEeCCCceecCceEEcCCc----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          160 FAVDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      ..+.||+++.|++++.|..++    .++||+++.|++++.|+++++||.......    ..+++||++|+||++++|.++
T Consensus        78 ~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  157 (259)
T 3hsq_A           78 TKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQF  157 (259)
T ss_dssp             CCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTT
T ss_pred             CcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCC
Confidence            356677777777777776432    455666655555555555444443322111    147999999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++||++|+||++|+|++|||+++++.|+|||+++.
T Consensus       158 v~Ig~~~~Vg~~s~V~~dvp~~~~~~G~pa~~~~~  192 (259)
T 3hsq_A          158 CFVGDYSMVAGLAKVVQDVPPYSTVDGNPSTVVGL  192 (259)
T ss_dssp             CEECTTCEECSSEEECSBBCTTEEEETTTTEEEEE
T ss_pred             CEECCCCEECCCCEEcccCCCCcEEeccCcEEEee
Confidence            99999999999999999999999999999999854

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.71  E-value=6.7e-17  Score=145.95  Aligned_cols=107  Identities=27%  Similarity=0.273  Sum_probs=83.8

Q ss_pred             eeeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECC
Q 039045          160 FAVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ..+.||+++.|+++++|..++     .++||+++.|+.++.|.++++||.......    ..+++||++|+||++++|.+
T Consensus        82 ~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~  161 (266)
T 3r0s_A           82 SGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQ  161 (266)
T ss_dssp             CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECC
Confidence            367788888888888887542     267777766666666655555554322211    14799999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      +++||++|+||++++|.+|||++++++|+|||+.+.
T Consensus       162 ~v~Ig~~a~Vg~~s~V~~dvp~~~~~~G~Pa~~~~~  197 (266)
T 3r0s_A          162 FVKVGEGCMIAGASALSQDIVPFCLAEGNRASIRSL  197 (266)
T ss_dssp             TCEECTTCEECSSCBBCSCBCTTEEEEEBTEEEEEE
T ss_pred             CcEECCCCEEccCCeEecccCCCeEEeccCcEEeec
Confidence            999999999999999999999999999999999543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.71  E-value=9.2e-17  Score=147.90  Aligned_cols=107  Identities=24%  Similarity=0.290  Sum_probs=83.8

Q ss_pred             eeEeCCCceecCceEEcCC----cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA----TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      .+.||+++.|+++++|..+    ..++||+++.|+.++.|+++++||.......    ..+++||++|+||.+++|++++
T Consensus       108 ~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v  187 (305)
T 3t57_A          108 FLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFC  187 (305)
T ss_dssp             EEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             eEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCe
Confidence            4667777777777777642    2566777766666666666666654322211    2479999999999999999999


Q ss_pred             EECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          233 KIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      +||++|+||++|+|++|||+++++.|+|||+.+..
T Consensus       188 ~IG~~a~ig~gs~V~~dvp~~~~~~G~Pa~~~~~n  222 (305)
T 3t57_A          188 HIGSFAFIGGGSVVSQDVPKYMMVAGERAELRGLN  222 (305)
T ss_dssp             EECTTCEECTTCEECSBBCTTEEEETTBTEEEEEC
T ss_pred             EECCCCEEcCCCeEcccCCCCeEEecCCcEEeccc
Confidence            99999999999999999999999999999997643

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.70  E-value=5.9e-17  Score=138.31  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEcc-----------CCEECCCCCCCC---CCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILH-----------HVTLGGTGKASG---DRHPKIGDGVLIGAG  225 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~-----------gv~Igg~~~~~~---~~~~~IG~~v~IGa~  225 (295)
                      ++.||+++.|++++.|... ..++||++|.|+++|.|..           .++||.......   -..++||++|+||++
T Consensus        37 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~  116 (189)
T 3r1w_A           37 DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMK  116 (189)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSSEEECTT
T ss_pred             eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCCcEECCC
Confidence            4556666666666666421 1346666666665554432           223332211110   024799999999999


Q ss_pred             CEECCCCEECCCCEECCCCEEc--CCCCCCcEEEccCcEEecCCC
Q 039045          226 ATILGNVKIGEGAKVGAGSVVL--IDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       226 a~I~~~v~IG~~~~IgagsvV~--~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      ++|.++++||++|+||++++|.  +++|++++++|+||+++++.+
T Consensus       117 ~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~  161 (189)
T 3r1w_A          117 SMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPIT  161 (189)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECC
T ss_pred             CEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCC
Confidence            9999999999999999999999  679999999999999998764

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.70  E-value=1.6e-16  Score=144.62  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             eeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      .+.||+++.|+++++|..++     .++||+++.|+.++.|+++++||.......    ..+++||++|+||++++|.++
T Consensus       100 ~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  179 (283)
T 4eqy_A          100 RLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY  179 (283)
T ss_dssp             EEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             eEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC
Confidence            45556666666666665422     155555555554444444444443322111    146999999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++||++|+|+++++|.+|||+++++.|+||++++.
T Consensus       180 v~Ig~~~vvg~~s~V~~dvp~~~~~~G~pa~~~~~  214 (283)
T 4eqy_A          180 VRIGAHSMLGGASALVQDIPPFVIAAGNKAEPHGI  214 (283)
T ss_dssp             CEECTTCEECTTCEECSBBCTTEEEETBTTEEEEE
T ss_pred             eEECCCcEECCCCeEecccCCCcEEeccCcEEeec
Confidence            99999999999999999999999999999999853

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.70  E-value=9.6e-17  Score=140.61  Aligned_cols=56  Identities=36%  Similarity=0.541  Sum_probs=53.7

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .+++||++|+||++|+|+++++||++|+||+||+|++|||++++++|+|||++++.
T Consensus       109 ~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  164 (212)
T 1xat_A          109 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  164 (212)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEEEccCCEEEccc
Confidence            46899999999999999999999999999999999999999999999999999864

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.69  E-value=2.2e-16  Score=142.29  Aligned_cols=106  Identities=29%  Similarity=0.381  Sum_probs=79.9

Q ss_pred             eeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      .+.||+++.|+++++|..++     .++||+++.|+.++.|+++++||.......    ..+++||++|+||++++|.++
T Consensus        85 ~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  164 (265)
T 4e6u_A           85 WLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF  164 (265)
T ss_dssp             EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred             eEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC
Confidence            56677777777777776432     356666655555555544444443322111    147999999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++||++|+|+++|+|.+|||+++++.|+|||+++.
T Consensus       165 v~Ig~~~~i~~~svV~~dvp~~~~~~G~pa~~~~~  199 (265)
T 4e6u_A          165 CKIDSYSMIGGASLILKDVPAYVMASGNPAHAFGI  199 (265)
T ss_dssp             CEECTTCEECTTCEECSBBCTTEEEEETTEEEEEE
T ss_pred             cEECCCCEEcCCCEEcccCCCCeEEEccCCEEecc
Confidence            99999999999999999999999999999999853

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.69  E-value=1.5e-16  Score=134.49  Aligned_cols=108  Identities=25%  Similarity=0.390  Sum_probs=79.0

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEcc----CCEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILH----HVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~----gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      ++.||+++.|++++.|... ..++||+++.|+++|.|..    +++||.......   -..++||++|+||++++|.+++
T Consensus        30 ~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~  109 (173)
T 1xhd_A           30 DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGA  109 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTC
T ss_pred             CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCC
Confidence            4566666666666666431 1266777776666665542    344443222111   1347999999999999999999


Q ss_pred             EECCCCEECCCCEEc--CCCCCCcEEEccCcEEecCCC
Q 039045          233 KIGEGAKVGAGSVVL--IDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       233 ~IG~~~~IgagsvV~--~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||++|+||++++|.  +++|++++++|+||+++++.+
T Consensus       110 ~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~  147 (173)
T 1xhd_A          110 EIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELT  147 (173)
T ss_dssp             EECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             EECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCC
Confidence            999999999999999  579999999999999998754

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.69  E-value=1.5e-16  Score=136.68  Aligned_cols=105  Identities=23%  Similarity=0.347  Sum_probs=76.7

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc-----------cCCEECCCCCCCCCCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL-----------HHVTLGGTGKASGDRHPKIGDGVLIGAGATI  228 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~-----------~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I  228 (295)
                      ++.||+++.|++++.|... ..++||++|.|+++|.|.           +++.|+.....   ..++||++|+||++++|
T Consensus        51 ~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i---~~~~Ig~~~~Ig~~~~I  127 (191)
T 3ixc_A           51 DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL---HACTLGNNAFVGMGSIV  127 (191)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE---CSCEECTTCEECTTCEE
T ss_pred             CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE---ECCEECCCCEECCCCEE
Confidence            3556666666666665421 134566666666654443           33333322222   35899999999999999


Q ss_pred             CCCCEECCCCEECCCCEEc--CCCCCCcEEEccCcEEecCCC
Q 039045          229 LGNVKIGEGAKVGAGSVVL--IDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       229 ~~~v~IG~~~~IgagsvV~--~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .++++||++|+||++++|.  +++|+++++.|+||+++++.+
T Consensus       128 ~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~  169 (191)
T 3ixc_A          128 MDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMT  169 (191)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             eCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCC
Confidence            9999999999999999999  679999999999999998764

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.69  E-value=9.9e-17  Score=140.20  Aligned_cols=56  Identities=41%  Similarity=0.575  Sum_probs=53.4

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .+++||++|+||++|+|+++++||++|+||+||+|.+|||++++++|+||+++++.
T Consensus       112 ~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~~G~Pa~~i~~~  167 (209)
T 1mr7_A          112 GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (209)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEEEeeCCEEeecc
Confidence            45899999999999999999999999999999999999999999999999999864

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.68  E-value=2.9e-16  Score=141.08  Aligned_cols=106  Identities=26%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             eeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045          161 AVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      .+.||+++.|+++++|..++     .++||+++.|+.++.|.++++||.......    ..+++||++|+||++++|.++
T Consensus        83 ~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~  162 (262)
T 2qia_A           83 RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF  162 (262)
T ss_dssp             EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             ceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC
Confidence            56677777777777776532     477777777776666666666654332211    246899999999999999999


Q ss_pred             CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      ++||++|+||++|+|++|+|+++++.|+||++++.
T Consensus       163 v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~  197 (262)
T 2qia_A          163 CIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGV  197 (262)
T ss_dssp             CEECTTCEECSSCEECSBBCTTEEEEEBTEEEEEE
T ss_pred             CEECCCCEEccCCEECCcCCCCeEEeccCceEecc
Confidence            99999999999999999999999999999999854

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.68  E-value=2.8e-16  Score=142.30  Aligned_cols=107  Identities=26%  Similarity=0.303  Sum_probs=80.3

Q ss_pred             eeeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECC
Q 039045          160 FAVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ..+.||+++.|+++++|..++     .++||+++.|+.++.|+++++||.......    ..+++||++|+||++++|.+
T Consensus        78 ~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~  157 (270)
T 1j2z_A           78 SELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQ  157 (270)
T ss_dssp             CEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred             cceEECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECC
Confidence            356667777777777776542     466666665555555444444443322111    14799999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      +++||++|+||++|+|++|||+++++.|+||++++.
T Consensus       158 ~v~IG~~a~Ig~~s~V~~dvp~~~~~~G~pa~~~~~  193 (270)
T 1j2z_A          158 FVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGL  193 (270)
T ss_dssp             TCEECTTCEECTTCEECSBBCTTEEEETTBTEEEEE
T ss_pred             CcEeCCceEEecCcEecccCCCCeEEecCCcEEecc
Confidence            999999999999999999999999999999999953

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.66  E-value=3.1e-16  Score=132.53  Aligned_cols=108  Identities=24%  Similarity=0.389  Sum_probs=76.9

Q ss_pred             eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEcc----CCEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILH----HVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~----gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      ++.||+++.|++++.|... ..++||++|.|+++|.|..    +++||.......   -.+++||++|+||++++|++++
T Consensus        28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~  107 (173)
T 1v3w_A           28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGA  107 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTC
T ss_pred             CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCC
Confidence            4556666666666666531 1256666666665554432    233332221110   0358999999999999999999


Q ss_pred             EECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          233 KIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      +||++|+||++++|.+  ++|+++++.|+||+++++.+
T Consensus       108 ~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~  145 (173)
T 1v3w_A          108 KIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLT  145 (173)
T ss_dssp             EECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             EECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCC
Confidence            9999999999999994  69999999999999998754

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.66  E-value=1.6e-16  Score=152.73  Aligned_cols=55  Identities=25%  Similarity=0.461  Sum_probs=52.1

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++||||+|++|+++++||++|+||+||+|++|||++++++|+||+++++.
T Consensus       397 ~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~G~p~~~~~~~  451 (459)
T 4fce_A          397 KTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVISRVKQVHIQG  451 (459)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTT
T ss_pred             CCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEEecccccchhh
Confidence            5899999999999999999999999999999999999999999999999877654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.64  E-value=3e-16  Score=150.65  Aligned_cols=55  Identities=27%  Similarity=0.450  Sum_probs=52.7

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++|+||+||+|.++++||++|+||++|+|++|||++++++|+||+++++.
T Consensus       394 ~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v~~~~~~~G~pa~~~~~~  448 (456)
T 2v0h_A          394 KTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRHIQG  448 (456)
T ss_dssp             CEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTT
T ss_pred             CcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCcCCCCEEEccCceehhhh
Confidence            6899999999999999999999999999999999999999999999999999754

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.63  E-value=8.8e-16  Score=143.47  Aligned_cols=106  Identities=25%  Similarity=0.353  Sum_probs=78.4

Q ss_pred             eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      +.||+++.||.++.|+.+  .+++||+++.|++++.|+++++||.......    ..+++||++|+||++++|.++++||
T Consensus       201 v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig  280 (341)
T 3eh0_A          201 VIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEIC  280 (341)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEEC
T ss_pred             EEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEEC
Confidence            455666666666666522  2455666665555555555555554332211    2478999999999999999999999


Q ss_pred             CCCEECCCCEEcCCCC-CCcEEEccCcEEecCC
Q 039045          236 EGAKVGAGSVVLIDVP-ARATAVGNPARLVGGK  267 (295)
Q Consensus       236 ~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~  267 (295)
                      ++++|+++++|++|+| +++++.|+||+.+++.
T Consensus       281 ~~~vv~a~s~V~~~v~~~~~~~~G~Pa~~~~~~  313 (341)
T 3eh0_A          281 DKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVW  313 (341)
T ss_dssp             SSEEECTTCEECSCBCSCEEEECCCCCEEHHHH
T ss_pred             CCCEEeeCCEECCCcCCCCeEEEecCchhHHHH
Confidence            9999999999999999 9999999999998753

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.63  E-value=8.5e-16  Score=145.28  Aligned_cols=105  Identities=20%  Similarity=0.373  Sum_probs=77.8

Q ss_pred             eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG  235 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG  235 (295)
                      +.|++++.||.+++|+.+  .+++||+++.|++++.|+++++||.......    ..+++||++|+||+++.|.++++||
T Consensus       223 v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig  302 (372)
T 3pmo_A          223 VTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEIC  302 (372)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEEC
T ss_pred             eEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEEC
Confidence            445555555555555422  2455666666666666656666654432221    2478999999999999999999999


Q ss_pred             CCCEECCCCEEcCCC-CCCcEEEccCcEEecC
Q 039045          236 EGAKVGAGSVVLIDV-PARATAVGNPARLVGG  266 (295)
Q Consensus       236 ~~~~IgagsvV~~~V-p~~~~v~G~PA~~i~~  266 (295)
                      ++|+|+++++|++|+ |+++++.|+||+.+++
T Consensus       303 ~~~vI~a~s~V~k~v~~~~~~~~G~Pa~~~~~  334 (372)
T 3pmo_A          303 DNVFVTGMTMVTRSITEPGSYSSGTAMQPAAE  334 (372)
T ss_dssp             SSEEECTTCEECSCBCSCEEECCSCCCCCHHH
T ss_pred             CCCEEeeCCEEccCcCCCCcEEEeCchHHHHH
Confidence            999999999999999 9999999999999875

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.60  E-value=1.5e-15  Score=146.46  Aligned_cols=55  Identities=38%  Similarity=0.669  Sum_probs=52.3

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .++||++|+||++|+|.++++||++|+||+||+|+++||++++++|+||+++++.
T Consensus       402 ~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~~~G~pa~~~~~~  456 (468)
T 1hm9_A          402 KTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDE  456 (468)
T ss_dssp             CEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCSCCCCCCTT
T ss_pred             CcEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEcCcceeehhh
Confidence            5899999999999999999999999999999999999999999999999998753

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.60  E-value=3.5e-15  Score=140.32  Aligned_cols=106  Identities=20%  Similarity=0.321  Sum_probs=78.4

Q ss_pred             eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKI  234 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~I  234 (295)
                      .+.||+++.||.+++|+.+  ..++||+++.|+++|.|+++++||.......    ..+++||++|+||++++|.++++|
T Consensus       205 ~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~I  284 (357)
T 4e79_A          205 SVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSI  284 (357)
T ss_dssp             CEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             cEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEE
Confidence            3555666666666666532  2555666665555555555555554332211    246899999999999999999999


Q ss_pred             CCCCEECCCCEEcCCC-CCCcEEEccCcEEecC
Q 039045          235 GEGAKVGAGSVVLIDV-PARATAVGNPARLVGG  266 (295)
Q Consensus       235 G~~~~IgagsvV~~~V-p~~~~v~G~PA~~i~~  266 (295)
                      |++|+|+++++|++|+ |+++++.|+||+.+++
T Consensus       285 g~~~vv~g~s~V~~~v~~~~~~~~G~Pa~~~~~  317 (357)
T 4e79_A          285 ADNVTLTGMSMVTKNISEAGTYSSGTGLFENNH  317 (357)
T ss_dssp             CSSEEECTTCEECSCBCSCEEEECSCCCEEHHH
T ss_pred             CCCCEEeecCEEcCccCCCCcEEEeCchHHHHH
Confidence            9999999999999999 9999999999999875

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.60  E-value=3.4e-15  Score=141.04  Aligned_cols=56  Identities=29%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      .+++||++|+||.++.|.++++||++|+||++|+|++|+|+++++.|+||+.++..
T Consensus       285 ~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~~~G~pa~~~~~~  340 (374)
T 2iu8_A          285 GSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEI  340 (374)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSCEEEEETTEEEHHHH
T ss_pred             CCcEECCCeEEecCcEECCCcccCCCcEEccCceeecccCCCcEEeCCCCchhHHH
Confidence            46899999999999999999999999999999999999999999999999998753

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.58  E-value=2e-14  Score=123.76  Aligned_cols=109  Identities=29%  Similarity=0.371  Sum_probs=89.9

Q ss_pred             eEeCCCceec--CceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045          162 VDIHPAAKIG--KGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK  239 (295)
Q Consensus       162 v~Ig~~a~IG--~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~  239 (295)
                      ..+++++.||  ++++|.+  +++|+.+++||++|.|+++++|+        ++++||++|+|+++++|.++++||++|+
T Consensus        82 a~i~~~~~Ig~~~g~~I~~--~~~I~~~~~IG~~~~I~~~~~i~--------~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~  151 (194)
T 3bfp_A           82 ALISPSAIVEENAGILIMP--YVVINAKAKIEKGVILNTSSVIE--------HECVIGEFSHVSVGAKCAGNVKIGKNCF  151 (194)
T ss_dssp             CEECTTCEECTTSCCEECT--TCEECTTCEECTTCEECTTCEEC--------TTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             EEECCCceeCCCCCcEEcC--CCEECCCCEECCCCEECCCCEEc--------CCCEECCCCEECCCCEECCCcEECCCCE
Confidence            4566677777  7777776  67777778888888888888886        3789999999999999999999999999


Q ss_pred             ECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          240 VGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       240 IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      ||++++|.+++. ....++|..+.+.+..++...+.++|++.
T Consensus       152 Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v~~~~~~~G~Pa~~  193 (194)
T 3bfp_A          152 LGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKR  193 (194)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCCC
T ss_pred             EcCCCEECCCCEECCCCEECCCCEEccccCCCCEEEeeccEE
Confidence            999999999852 33455688899998888888888999875

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.58  E-value=3.6e-15  Score=136.38  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=62.5

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC----CCCCc------EEE
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID----VPARA------TAV  257 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~----Vp~~~------~v~  257 (295)
                      ++||++|.|+++++|++.........++||++|+||+||+|  +++||++|+||+||+|++|    ++++.      +..
T Consensus       208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~el~g  285 (332)
T 3fsy_A          208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSG  285 (332)
T ss_dssp             CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGGGGTT
T ss_pred             eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhHHhcC
Confidence            57888888889998887644444567999999999999999  9999999999999999998    44443      344


Q ss_pred             ccCcEEecCCC
Q 039045          258 GNPARLVGGKE  268 (295)
Q Consensus       258 G~PA~~i~~~~  268 (295)
                      ++|+++.++..
T Consensus       286 ~~~~~f~r~s~  296 (332)
T 3fsy_A          286 SSNLLFRRNSV  296 (332)
T ss_dssp             CSSEEEEECTT
T ss_pred             CCCCEEEecCC
Confidence            77777776653

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.57  E-value=2e-14  Score=125.82  Aligned_cols=109  Identities=23%  Similarity=0.391  Sum_probs=92.1

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ...+++++.||++++|.+  +++|+++++||++|.|+++++|+.        +++||++|+|+++++|.++++||++|+|
T Consensus       105 ~a~i~~~v~IG~g~~I~~--~~~i~~~~~IG~~~~I~~~~~I~~--------~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I  174 (220)
T 4ea9_A          105 SAVVSPSVRLGEGVAVMA--GVAINADSWIGDLAIINTGAVVDH--------DCRLGAACHLGPASALAGGVSVGERAFL  174 (220)
T ss_dssp             TCEECTTCEECSSCEECT--TCEECTTCEECTTCEECTTCEECT--------TCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CCEECCCCEECCCCEEcC--CCEECCCCEECCCCEECCCCEECC--------CCEECCCCEECCCCEEcCCCEECCCCEE
Confidence            344667777777777777  788888888888888888888873        6899999999999999999999999999


Q ss_pred             CCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCc
Q 039045          241 GAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGE  279 (295)
Q Consensus       241 gagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~  279 (295)
                      |++++|.+++. ....++|..+.+.+..++...+.++|++
T Consensus       175 g~~~~i~~~~~Ig~~~~igagsvv~~~v~~~~~~~G~Pa~  214 (220)
T 4ea9_A          175 GVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAK  214 (220)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSCBCTTCEEETTTTE
T ss_pred             CCCCEEcCCcEECCCCEECCCCEEccccCCCcEEEEeCCE
Confidence            99999999853 4456668899999888887777899998

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.55  E-value=4.7e-15  Score=129.26  Aligned_cols=107  Identities=24%  Similarity=0.293  Sum_probs=76.9

Q ss_pred             eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEcc--------------CCEECCCCCCCC----CCCCEECCCC
Q 039045          161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILH--------------HVTLGGTGKASG----DRHPKIGDGV  220 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~--------------gv~Igg~~~~~~----~~~~~IG~~v  220 (295)
                      ++.||+++.|++++.|...  ..++||++|.|+++|.|..              .++||.......    ..+++||++|
T Consensus        57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v  136 (213)
T 3kwd_A           57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGC  136 (213)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTC
T ss_pred             ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCC
Confidence            4567777777777766542  2467777777777665543              133333222111    0238999999


Q ss_pred             EECCCCEECCCCEECCCCEECCCCEE-------cCCCCCCcEEE-ccCcEEecCCC
Q 039045          221 LIGAGATILGNVKIGEGAKVGAGSVV-------LIDVPARATAV-GNPARLVGGKE  268 (295)
Q Consensus       221 ~IGa~a~I~~~v~IG~~~~IgagsvV-------~~~Vp~~~~v~-G~PA~~i~~~~  268 (295)
                      +||++++|.+ ++||++|+||++++|       ...||+++++. |+||+.+++..
T Consensus       137 ~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv~~g~pa~~i~~~~  191 (213)
T 3kwd_A          137 FIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPNVE  191 (213)
T ss_dssp             EECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECTTCEECSHHHHTTCCBCC
T ss_pred             EECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECCCcEEcCCCCccccccCC
Confidence            9999999986 999999999999999       66789999999 99999888754

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.51  E-value=1.6e-14  Score=123.87  Aligned_cols=109  Identities=17%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      +++++.|.+++.++.+.+++||+++.|+.+|.|.+.+            .++||++|.||++|+|               
T Consensus        59 ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~------------~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~  126 (188)
T 3srt_A           59 VGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVC------------KIEIGDNVMLAPNVQIYTAYHPIDAQLRNSG  126 (188)
T ss_dssp             CCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSS------------CEEECSSCEECTTCEEECEECCSSHHHHHTT
T ss_pred             cCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCC------------ceEECCeeEECCCcEEeeCCccCchhhcccc
Confidence            6777777777777655566666666666666665433            3478888888888888               


Q ss_pred             ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                         .++++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~vi~~i  186 (188)
T 3srt_A          127 IEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKI  186 (188)
T ss_dssp             EEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSCBCSSEEEETTTTEEEEEC
T ss_pred             ceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence               57899999999999999998864 556788888999888777777789999877653

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.50  E-value=5.9e-14  Score=129.27  Aligned_cols=62  Identities=26%  Similarity=0.392  Sum_probs=49.7

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP  251 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp  251 (295)
                      ++||++|.|+++++|++.........++||++|+||+|++|  +++||++|+||+|++|++|++
T Consensus       231 v~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~  292 (347)
T 3r5d_A          231 VFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTK  292 (347)
T ss_dssp             CEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCE
T ss_pred             EEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCE
Confidence            56888888888888876543344457999999999999999  999999999999999999954

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.50  E-value=3.2e-14  Score=123.09  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             CCEECCCCEECCCCEE-------------------------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecC
Q 039045          213 HPKIGDGVLIGAGATI-------------------------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGG  266 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I-------------------------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~  266 (295)
                      +++||++|+||++|+|                         .++++||++|+||++++|.+++. ....++|..+.+.+.
T Consensus        91 ~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A           91 GIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             EEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             cEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence            4899999999999999                         68999999999999999999953 344556888888888


Q ss_pred             CCCCCCCCCCCCcccccc
Q 039045          267 KEKTSSNEECPGESMDHT  284 (295)
Q Consensus       267 ~~~~~~~~~~p~~~~~~~  284 (295)
                      .+......+.|++.++..
T Consensus       171 v~~~~v~~G~Pa~~i~~~  188 (205)
T 3vbi_A          171 LDDWYIYVGVPVRKIKAR  188 (205)
T ss_dssp             BCTTEEEETTTTEEEEEC
T ss_pred             cCCCeEEEccCCEEeeec
Confidence            777667778999877653

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.49  E-value=1.3e-13  Score=130.21  Aligned_cols=45  Identities=38%  Similarity=0.335  Sum_probs=37.6

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV  257 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~  257 (295)
                      +++||++|+||+||+|+++++||++|+||+||+|++|||++++++
T Consensus       356 ~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~~v~  400 (401)
T 2ggo_A          356 GAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEFFK  400 (401)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             CcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCcEEe
Confidence            578888888888888888888888888888888888888887764

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.48  E-value=2.2e-13  Score=116.44  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          230 GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      ++++||++|+||++++|.+++. ....++|..+.+.+..+....+.+.|++.++.
T Consensus       101 ~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~~  155 (192)
T 3mqg_A          101 RDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGW  155 (192)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             CCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccCCEEEEe
Confidence            3467888899999999998842 34455677788888777777777899986643

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.47  E-value=5.7e-14  Score=120.06  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=75.1

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      ++ ++.|.+.++++.+.+++||+++.|+.+|+|.+.            ..++||++|.|+++|+|               
T Consensus        56 ~g-~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~------------~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~  122 (182)
T 1ocx_A           56 VT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDV------------CPIRIGDNCMLAPGVHIYTATHPIDPVARNSG  122 (182)
T ss_dssp             CS-SEEECSCEEESSSTTEEECSSEEECSSEEEECS------------SCEEECTTCEECTTCEEECEECCSSHHHHTTT
T ss_pred             cC-CEEEeCCEEEEeCCCEEECCCcEEeCCeEEEec------------cceEEcCCcEEeCCcEEEeCCCccChhhcccC
Confidence            44 555555555443335555555555554444322            24688999999999988               


Q ss_pred             ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                         .++++||++|+||++++|.+++. ....++|..+.+.+..+......++|++.++.
T Consensus       123 ~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~dip~~~vv~G~Pa~~i~~  181 (182)
T 1ocx_A          123 AELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             ccccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCcCCCCcEEEccccEEecc
Confidence               46899999999999999999853 44455688899988877777778899987653

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.47  E-value=2.3e-13  Score=120.73  Aligned_cols=112  Identities=25%  Similarity=0.355  Sum_probs=78.7

Q ss_pred             EeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC--------CEE
Q 039045          163 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN--------VKI  234 (295)
Q Consensus       163 ~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~--------v~I  234 (295)
                      .|++++.||+++.|..  +++|+.+++||++|.|+.+++|++        +++||++|.|+++++|.+.        ++|
T Consensus        99 ~I~~~v~Ig~~~~I~~--~s~I~~~~~IG~~~~I~~~~~I~~--------~~~IG~~~~I~~~~~i~~~~~~~~~~~~~I  168 (240)
T 3r8y_A           99 IIRDHVEIGDNAVIMM--NATINIGAVIGEGSMIDMNAVLGG--------RATVGKNCHVGAGAVLAGVIEPPSAKPVIV  168 (240)
T ss_dssp             EEBSSCEECTTCEECT--TCEECTTCEECTTCEECTTCEECT--------TCEECTTCEECTTCEECCCCSCTTSCCCEE
T ss_pred             EECCCcEECCCCEECC--CCEECCCCEECCCCEECCCCEECC--------CCEECCCcEECCCcEECCCccCCCCCCcEE
Confidence            3444444444444444  555555566666666666666653        6899999999999999653        999


Q ss_pred             CCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          235 GEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       235 G~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      |++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus       169 g~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~~G~Pak~i~~~  219 (240)
T 3r8y_A          169 EDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIKEI  219 (240)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEC
T ss_pred             CCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEEEccCCEEEecC
Confidence            99999999999987742 444567778888877776666678898876543

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.46  E-value=9.4e-14  Score=135.68  Aligned_cols=54  Identities=37%  Similarity=0.589  Sum_probs=49.8

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcE-EEccCcEEec
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARAT-AVGNPARLVG  265 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~-v~G~PA~~i~  265 (295)
                      ++++||++|+||.++.|.++++||++|+||+||+|++|||++++ +.|.|++.++
T Consensus       410 ~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~~~~~~~~~~~  464 (501)
T 3st8_A          410 RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIE  464 (501)
T ss_dssp             CCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCT
T ss_pred             cCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeEEeccCceecc
Confidence            35899999999999999999999999999999999999999996 5568999875

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.45  E-value=2.8e-13  Score=117.10  Aligned_cols=109  Identities=19%  Similarity=0.252  Sum_probs=82.5

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      +++++.|..++.++.+.+++||+++.|+.+|+|.++.            .++||++|.||++|+|               
T Consensus        57 ~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~------------~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~  124 (199)
T 3ftt_A           57 TTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGG------------QITIGDNVFIGPNCGFYTATHPLNFHHRNEG  124 (199)
T ss_dssp             CCSSEEECSSEEESSSTTEEECSSEEECTTEEEECSS------------CEEECSSEEECTTCEEECEECCSSHHHHHTT
T ss_pred             cCCCeEEeCCEEEEecCCcEECCCeEECCCeEEecCC------------EEEECCCCEECCCCEEecCCCcCcccccccc
Confidence            6677777777777655566666666666666554432            3578888888888888               


Q ss_pred             ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                         .++++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus       125 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~~~  184 (199)
T 3ftt_A          125 FEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKI  184 (199)
T ss_dssp             EEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             ceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEeeC
Confidence               68899999999999999999964 555677888999888877777789999877654

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.45  E-value=2.2e-12  Score=110.57  Aligned_cols=109  Identities=20%  Similarity=0.273  Sum_probs=80.2

Q ss_pred             eCC-CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE--------------
Q 039045          164 IHP-AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI--------------  228 (295)
Q Consensus       164 Ig~-~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I--------------  228 (295)
                      +++ ++.|.++++++.+.+++||+++.|+.+|.|.+..            .++||++|.||++|+|              
T Consensus        60 ~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~------------~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~  127 (190)
T 3hjj_A           60 SADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVC------------EVRIGDHCMFAPGVHIYTATHPLHPVERNS  127 (190)
T ss_dssp             ESSSCCEECSSCEESSSTTEEECTTCEECTTCEEECSS------------CEEECTTCEECTTCEEECEECCSSHHHHTS
T ss_pred             cCCCCcEECCCEEEEeCCceEECCceeeCCCeEEEeCC------------CeEECCceEEcCCcEEecCCccCchhhccc
Confidence            555 6777776666554455555555555555554322            3578888888888888              


Q ss_pred             ----CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          229 ----LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       229 ----~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                          .++++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus       128 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~  188 (190)
T 3hjj_A          128 GKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTI  188 (190)
T ss_dssp             SEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence                67899999999999999999864 555677888999888777777789999877643

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.42  E-value=5.7e-13  Score=124.37  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=56.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC-CCCCCCCCCCccccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE-KTSSNEECPGESMDH  283 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~-~~~~~~~~p~~~~~~  283 (295)
                      ++++||++|+|++++.|.++++||++|+||++++|.+  ++++++++.|. +.+.+..+ ......+.|++.+++
T Consensus       239 ~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~-s~V~~~v~~~~~~~~G~Pa~~~~~  312 (341)
T 3eh0_A          239 HNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGM-GMVMRPITEPGVYSSGIPLQPNKV  312 (341)
T ss_dssp             TTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTT-CEECSCBCSCEEEECCCCCEEHHH
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeC-CEECCCcCCCCeEEEecCchhHHH
Confidence            4678888888888888899999999999999999999  47899888887 45566554 444445889887654

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.42  E-value=5.9e-13  Score=125.08  Aligned_cols=71  Identities=20%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCC-CCCCCCCCCCCccccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGK-EKTSSNEECPGESMDH  283 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~-~~~~~~~~~p~~~~~~  283 (295)
                      ++++||++|+|++++.|.++++||++|+||++++|.+  +|++++++.|.|+. .+.. +......+.|++.+++
T Consensus       244 ~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V-~~~v~~~~~~~~G~Pa~~~~~  317 (357)
T 4e79_A          244 HNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMV-TKNISEAGTYSSGTGLFENNH  317 (357)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEE-CSCBCSCEEEECSCCCEEHHH
T ss_pred             CCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEE-cCccCCCCcEEEeCchHHHHH
Confidence            4577888888888888888999999999999999996  47999999998765 4444 4444446888876543

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.41  E-value=6.4e-13  Score=119.74  Aligned_cols=68  Identities=19%  Similarity=0.215  Sum_probs=56.2

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGES  280 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~  280 (295)
                      ++++||++|+|+.++++.++++||++|+||++++|.+++  ++++++.|.+. +.+..+......+.|++.
T Consensus       125 ~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~-V~~dvp~~~~~~G~Pa~~  194 (266)
T 3r0s_A          125 HDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASA-LSQDIVPFCLAEGNRASI  194 (266)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCB-BCSCBCTTEEEEEBTEEE
T ss_pred             cccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCe-EecccCCCeEEeccCcEE
Confidence            468999999999999999999999999999999999996  88888776554 445555555556788876

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.41  E-value=1.3e-13  Score=122.91  Aligned_cols=107  Identities=15%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             eeEeCCCceecCceEEcCCc--CeEECCCcEEcCCcEEccC-----------------------CEECCCCCCCCC----
Q 039045          161 AVDIHPAAKIGKGILFDHAT--GVVIGETAVIGNNVSILHH-----------------------VTLGGTGKASGD----  211 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~--~v~IG~~~~IG~~v~I~~g-----------------------v~Igg~~~~~~~----  211 (295)
                      ++.||+++.|++++.|....  .++||++|.|+++|.|..+                       ++||........    
T Consensus        77 ~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~  156 (247)
T 1qre_A           77 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH  156 (247)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred             CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEc
Confidence            35555556666555554422  4567777777766666532                       344432221110    


Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEE-cCCCCCCcE------EEcc-CcEEecCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV-LIDVPARAT------AVGN-PARLVGGKE  268 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV-~~~Vp~~~~------v~G~-PA~~i~~~~  268 (295)
                      .+++||++|+||++++|.+ ++||++|+||+|++| ..+||++++      +.|. ||+.+++..
T Consensus       157 ~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv~~~~pa~~i~~~~  220 (247)
T 1qre_A          157 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVT  220 (247)
T ss_dssp             EEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCCBCC
T ss_pred             CCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEECCCCEEecCcchhhhhhhh
Confidence            1378999999999999988 999999999999999 222455554      4343 666666543

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.41  E-value=2.1e-13  Score=118.56  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=50.7

Q ss_pred             CEECCCCEECCCCEE------------------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCC
Q 039045          214 PKIGDGVLIGAGATI------------------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNE  274 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I------------------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~  274 (295)
                      ++||++|.||++|+|                  .++++||++|+||++++|.+++- ....++|.-+.+.+..+......
T Consensus        96 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~  175 (203)
T 1krr_A           96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAA  175 (203)
T ss_dssp             EEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEE
T ss_pred             eEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEE
Confidence            456666666666654                  35688888888888888888753 44456677888887777666677


Q ss_pred             CCCCcccccc
Q 039045          275 ECPGESMDHT  284 (295)
Q Consensus       275 ~~p~~~~~~~  284 (295)
                      +.|++..+..
T Consensus       176 G~PArvik~~  185 (203)
T 1krr_A          176 GVPCRVIREI  185 (203)
T ss_dssp             TTTTEEEEEC
T ss_pred             ccCcEEeccC
Confidence            8999877654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.41  E-value=1e-12  Score=124.19  Aligned_cols=71  Identities=18%  Similarity=0.190  Sum_probs=56.9

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCC-CCCCCCCCCCCccccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGK-EKTSSNEECPGESMDH  283 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~-~~~~~~~~~p~~~~~~  283 (295)
                      ++++||++|+|++++.|.++++||++|+||++++|.++  +++++++.|.+.. .+.. +.+..+.+.|++.+++
T Consensus       261 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V-~k~v~~~~~~~~G~Pa~~~~~  334 (372)
T 3pmo_A          261 HNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMV-TRSITEPGSYSSGTAMQPAAE  334 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEE-CSCBCSCEEECCSCCCCCHHH
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEE-ccCcCCCCcEEEeCchHHHHH
Confidence            45777888888888888899999999999999999998  7899888887764 4444 4555567899987654

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.40  E-value=1.3e-12  Score=118.87  Aligned_cols=69  Identities=26%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESM  281 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~  281 (295)
                      ++++||++|+|+.+++|.++++||++|+||++++|.+++  ++++++.+ .+.+.+..+......+.|++..
T Consensus       142 ~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~-~s~V~~dvp~~~~~~G~pa~~~  212 (283)
T 4eqy_A          142 HDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGG-ASALVQDIPPFVIAAGNKAEPH  212 (283)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT-TCEECSBBCTTEEEETBTTEEE
T ss_pred             CCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECC-CCeEecccCCCcEEeccCcEEe
Confidence            568889999999999999999999999999999999996  77777765 4566666665555567888765

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.39  E-value=1.6e-12  Score=111.96  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      +++++.|.+++.+.-+.+++||+++.|+.+|+|.+++            .++||++|.||++|+|               
T Consensus        59 ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~------------~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~  126 (195)
T 3nz2_A           59 LGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGA------------PITIGDHVLIGPSTQFYTASHSLDYRRRQAW  126 (195)
T ss_dssp             ECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSS------------CEEECTTCEECTTCEEECEECCSSGGGTTTC
T ss_pred             cCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCc------------eEEECCCCEECCCCEEecCCCCccccccccc
Confidence            6666766665554433355555555555555554332            3477777777777765               


Q ss_pred             ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                         .++++||++|+||++++|.+++. ....++|.-+.+.+..+......+.|++.++..
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~  186 (195)
T 3nz2_A          127 ETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSL  186 (195)
T ss_dssp             CCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEEC
T ss_pred             ceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCcEEEccCCEEeccc
Confidence               45789999999999999999864 555677888888888777777789999877654

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.39  E-value=3.8e-13  Score=126.79  Aligned_cols=73  Identities=19%  Similarity=0.301  Sum_probs=56.1

Q ss_pred             EECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc
Q 039045          183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG  258 (295)
Q Consensus       183 ~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G  258 (295)
                      +||++++||++|.|+++++|++.........++||++|+||+||+  .+++||++|+||+|++|++++|.+.. .|
T Consensus       260 ~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~~-~G  332 (387)
T 2rij_A          260 RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLLK-DA  332 (387)
T ss_dssp             EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEEC-CH
T ss_pred             EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeeec-CC
Confidence            455566666777777776665432222223489999999999999  89999999999999999999987766 66

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.39  E-value=1.2e-12  Score=111.29  Aligned_cols=95  Identities=22%  Similarity=0.235  Sum_probs=68.6

Q ss_pred             EEcCCcEEccCCEECCCCCC---CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEe
Q 039045          189 VIGNNVSILHHVTLGGTGKA---SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLV  264 (295)
Q Consensus       189 ~IG~~v~I~~gv~Igg~~~~---~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i  264 (295)
                      +||++|.|+++++|......   ....+++||++|+||++++| .+++||++|+||++++|.+++- ....++|..+.+.
T Consensus        56 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~  134 (187)
T 3r3r_A           56 AIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVML-HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVP  134 (187)
T ss_dssp             EECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred             EECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEE-eCcEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            66777777777777432110   01246899999999999999 5699999999999999998753 4456778888887


Q ss_pred             --cCCCCCCCCCCCCCcccccc
Q 039045          265 --GGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       265 --~~~~~~~~~~~~p~~~~~~~  284 (295)
                        +..+......+.|++.++..
T Consensus       135 ~~~~i~~~~vv~G~pa~~i~~~  156 (187)
T 3r3r_A          135 QHKRLESGYLYLGSPVKQIRPL  156 (187)
T ss_dssp             TTCEECTTEEEETTTTEEEEEC
T ss_pred             CCcCcCCCcEEEecCCeEcCcC
Confidence              44445555578898866543

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.39  E-value=2e-12  Score=115.98  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      ++++||++|+|+.++.+.++++||++|+||++++|.+++  ++++++ |..+.+.+..+......+.|++...
T Consensus       120 ~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~V-g~~s~V~~dvp~~~~~~G~pa~~~~  191 (259)
T 3hsq_A          120 HDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMV-AGLAKVVQDVPPYSTVDGNPSTVVG  191 (259)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEE-CSSEEECSBBCTTEEEETTTTEEEE
T ss_pred             CCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEE-CCCCEEcccCCCCcEEeccCcEEEe
Confidence            468888899999999999999999999999999999997  677655 5577887777766666789988753

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.38  E-value=4.4e-13  Score=114.78  Aligned_cols=94  Identities=19%  Similarity=0.249  Sum_probs=63.9

Q ss_pred             ECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE------------------CCCCEECCCCEECCCCE
Q 039045          184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI------------------LGNVKIGEGAKVGAGSV  245 (295)
Q Consensus       184 IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I------------------~~~v~IG~~~~Igagsv  245 (295)
                      +|.++.||+++.|..+++|...      ..++||++|.||++|+|                  .++++||++|+||++++
T Consensus        71 ~g~~v~IG~~~~i~~~~~i~~~------~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~  144 (185)
T 2p2o_A           71 YGYNIHVGENFFMNFDGVILDV------CEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAV  144 (185)
T ss_dssp             CSTTEEECTTEEECSSEEEECS------SCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCE
T ss_pred             ecCCEEECCeeEEcCCeEEEec------cceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCE
Confidence            3444555555555555555311      24688888888888888                  45788999999999998


Q ss_pred             EcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          246 VLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       246 V~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      |.+++. ....++|.-+.+.+..+......+.|++.++.
T Consensus       145 I~~gv~IG~~~vIgagsvV~~~vp~~~vv~G~Pa~vi~~  183 (185)
T 2p2o_A          145 INPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIKW  183 (185)
T ss_dssp             ECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCCCCcEEEcccCEEeee
Confidence            888753 44566677788877766666666788876543

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.38  E-value=1.6e-12  Score=111.42  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=72.1

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE---------ccCCEECCCCCCCCCC---CCEECCCCEECCCCEEC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI---------LHHVTLGGTGKASGDR---HPKIGDGVLIGAGATIL  229 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I---------~~gv~Igg~~~~~~~~---~~~IG~~v~IGa~a~I~  229 (295)
                      ..|++++.|++++.|..  ++.||+++.|++++.|         ++++.|+.........   +++||++|+||++++| 
T Consensus        34 ~~ig~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i-  110 (191)
T 3ixc_A           34 PSVDSTAFIAGNARIIG--DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL-  110 (191)
T ss_dssp             CEECTTSEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE-
T ss_pred             CEECCCCEECCCCEEeC--CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE-
Confidence            34555555555555443  4444444444444333         3334443332222111   6899999999999988 


Q ss_pred             CCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEe--cCCCCCCCCCCCCCccccc
Q 039045          230 GNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLV--GGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i--~~~~~~~~~~~~p~~~~~~  283 (295)
                      .+++||++|+||++++|.+++  +++ .++|..+.+.  +..+......+.|++.++.
T Consensus       111 ~~~~Ig~~~~Ig~~~~I~~~~~Ig~~-~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~  167 (191)
T 3ixc_A          111 HACTLGNNAFVGMGSIVMDRAVMEEG-SMLAAGSLLTRGKIVKSGELWAGRPAKFLRM  167 (191)
T ss_dssp             CSCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             ECCEECCCCEECCCCEEeCCeEECCC-CEECCCCEECCCcCcCCCeEEECcCceeccc
Confidence            569999999999999999874  455 4556667666  3334444445778876543

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.38  E-value=2.5e-12  Score=115.56  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESM  281 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~  281 (295)
                      ++++||++|+|+.+++|.++++||++|+||++++|.+++  ++++++.+ .+.+.+..+......+.|++..
T Consensus       127 ~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~-~svV~~dvp~~~~~~G~pa~~~  197 (265)
T 4e6u_A          127 HDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGG-ASLILKDVPAYVMASGNPAHAF  197 (265)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECT-TCEECSBBCTTEEEEETTEEEE
T ss_pred             ccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcC-CCEEcccCCCCeEEEccCCEEe
Confidence            468899999999999999999999999999999999996  77766654 5777776665555567888765

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.37  E-value=1.2e-12  Score=111.35  Aligned_cols=94  Identities=23%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             EEcCCcEEccCCEECCCCCCC---CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEe
Q 039045          189 VIGNNVSILHHVTLGGTGKAS---GDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLV  264 (295)
Q Consensus       189 ~IG~~v~I~~gv~Igg~~~~~---~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i  264 (295)
                      +||++|.|+++++|.......   ...+++||++|+||++++|.+ ++||++|+||++++|.+++. ....++|..+.+.
T Consensus        60 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~  138 (189)
T 3r1w_A           60 RIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVS  138 (189)
T ss_dssp             EECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred             EECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEEC
Confidence            556667777777775421110   123679999999999999965 99999999999999998843 3345667777777


Q ss_pred             --cCCCCCCCCCCCCCccccc
Q 039045          265 --GGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       265 --~~~~~~~~~~~~p~~~~~~  283 (295)
                        +..+......+.|++.++.
T Consensus       139 ~g~~i~~~~vv~G~pa~~i~~  159 (189)
T 3r1w_A          139 PGKVLESGFVYMGTPAKKVRP  159 (189)
T ss_dssp             TTCEECTTEEEETTTTEEEEE
T ss_pred             CCCEeCCCCEEECCccccccC
Confidence              3444555556889887655

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.37  E-value=3.1e-12  Score=115.65  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      ++++||++|+|+.+++|.++++||++|+||++++|.+++  ++++++. ..+.+.+..+......+.|++...
T Consensus       121 ~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig-~~s~V~~dvp~~~~~~G~pa~~~~  192 (270)
T 1j2z_A          121 HDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIA-GKSALGKDVPPYCTVEGNRAFIRG  192 (270)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEEC-TTCEECSBBCTTEEEETTBTEEEE
T ss_pred             CCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEe-cCcEecccCCCCeEEecCCcEEec
Confidence            457888888888888999999999999999999999995  5666654 458888877666666788988763

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.33  E-value=1e-11  Score=111.65  Aligned_cols=51  Identities=27%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             CCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          231 NVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      +++||++|+||++++|.+++  .+++ ++|.-+.+.+..+....+.+.|++.+.
T Consensus       170 ~v~Ig~~~~IG~~~~I~~g~~IG~~~-~IgagsvV~~dvp~~~~~~G~PA~~i~  222 (273)
T 3fs8_A          170 GVTIELFAVIAARSVVLPGIHINEDA-LVGAGAVVTKDVPKETVVVGNPAREIC  222 (273)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTC-EECTTCEECSCBCTTEEEEETTEEEEE
T ss_pred             CcEECCCeEEcCCCEEcCCCEECCCC-EECCCCEECccCCCCcEEEecCcEEec
Confidence            68999999999999999985  4554 557778888887777777789987654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.33  E-value=9.1e-12  Score=113.03  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------CCE
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------NVK  233 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------~v~  233 (295)
                      +.|++++.||+++.|.+  + +|+.++.||++|.|+++++|+.        +++||++|.|++++.|.+        +++
T Consensus       111 a~I~~~~~Ig~g~~I~~--~-~i~~~~~IG~~~~I~~~~~Ig~--------~~~IG~~v~I~~~~~i~g~~~~~~~~~v~  179 (276)
T 3gos_A          111 ATVRKGAFIARNTVLMP--S-YVNIGAFVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPTI  179 (276)
T ss_dssp             CEEBTTCEECTTCEECS--E-EECTTCEECTTCEECTTEEECT--------TCEECTTCEECTTCEECCCCSSTTSCCCE
T ss_pred             cEECCCCEECCCCEEcC--C-EEcCCeEECCCCEECCCCEECC--------CCEECCCCEECCCCEECCccccCCCCCeE
Confidence            44555555555555554  3 6777899999999999999974        689999999999999976        899


Q ss_pred             ECCCCEECCCCEEcCCCC-CCcEEEccCcEEec
Q 039045          234 IGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG  265 (295)
Q Consensus       234 IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~  265 (295)
                      ||++|+||++++|.+++. ....++|.-+.+.+
T Consensus       180 IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~  212 (276)
T 3gos_A          180 IEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQ  212 (276)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            999999999999998853 33345566666554

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.32  E-value=7e-12  Score=112.35  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      ++++||++++|+.++.+.++++||++|+||++++|.++  +++++++.+ -+.+.+..+......+.|++...
T Consensus       125 ~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~-~s~V~~~v~~~~~~~G~pa~~~~  196 (262)
T 2qia_A          125 HDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGG-CSGVAQDVPPYVIAQGNHATPFG  196 (262)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS-SCEECSBBCTTEEEEEBTEEEEE
T ss_pred             CCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEcc-CCEECCcCCCCeEEeccCceEec
Confidence            35677777777778888888999999999999999998  467766554 57887776666556778887653

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.32  E-value=3.5e-12  Score=122.22  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             CEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          214 PKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      ++||++|+||++++|..       +++||++|+||++++|.++  +++++++ |..+.+.+..+....+.+.|++..+..
T Consensus       370 ~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~i-g~~s~v~~~v~~~~~~~G~pa~~~~~~  448 (456)
T 2v0h_A          370 SEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATI-GAGTTITRDVGENELVITRVAQRHIQG  448 (456)
T ss_dssp             EEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEE-CTTCEECSCBCTTCEECCCCCCCCCTT
T ss_pred             cEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEE-CCCCEECCCcCCCCEEEccCceehhhh
Confidence            58999999999999976       8999999999999999999  5666655 557888888777777788999887654

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.32  E-value=7.3e-12  Score=115.21  Aligned_cols=93  Identities=19%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------CC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------NV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------~v  232 (295)
                      ++.|++++.||+++.|.+  + +|+.++.||++|.|.++++|+.        ++.||++|.|++++.|.+        ++
T Consensus       135 ~a~I~~~v~Ig~g~~I~~--~-~I~~~~~IG~~~~I~~~~~Ig~--------~~~IG~~v~I~~~~~i~~~~~~~~~~~v  203 (304)
T 3eg4_A          135 NCIVRHSAYIAPNAILMP--S-FVNLGAYVDKGAMIDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPMQAGPT  203 (304)
T ss_dssp             TCEEBTTCEECTTCEECS--E-EECTTCEECTTCEECTTEEECT--------TCEECTTCEECTTCEECCCCSSTTCCCC
T ss_pred             CEEECCCcEECCCCEEeC--C-EECCCCEECCCcEEcCCcEECC--------CCccCCCcEECCCCEECCccccCccCCe
Confidence            455666666677777765  4 7777888999999988888874        689999999999999977        79


Q ss_pred             EECCCCEECCCCEEcCCCC-CCcEEEccCcEEe
Q 039045          233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARLV  264 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i  264 (295)
                      +||++|+||++++|.+++. ....++|..+.+.
T Consensus       204 ~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~  236 (304)
T 3eg4_A          204 IIEDNCFIGARSEVVEGCIVREGSVLGMGVFIG  236 (304)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEcCCCEECCCCEEcCCcEECCCcEECCCCEEc
Confidence            9999999999999998853 3344556555554

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.31  E-value=1.9e-12  Score=126.24  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=72.2

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC----
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN----  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~----  231 (295)
                      ++.||+++.|++++.|.   .++||++|.|+++|+|     +++|+|+......   .++||++|+||++|+|.++    
T Consensus       291 ~v~IG~~~~I~~~a~I~---~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~---gv~IGd~v~IG~~a~I~~~~~~~  364 (496)
T 3c8v_A          291 DTVIGENVLVSQRAYLD---NAWMGKGSNAQENCYIINSRLERNCVTAHGGKII---NAHLGDMIFTGFNSFLQGSESSP  364 (496)
T ss_dssp             SCEECTTCEECTTCEEE---EEEECTTCEECTTCEEEEEEEEESCEECTTCEEE---SEEEEETCEECTTCEEECCSSSC
T ss_pred             CeEECCCCEECCCcEEe---ceEecCCCEECCCceEeceEeCCCCEECCCcEEc---CceECCCcEECCCCEEeCCCCcc
Confidence            45667777777766662   5677777777666544     4555555433332   4899999999999999999    


Q ss_pred             CEECCCCEECCCCEEc----CCCCCCcEEEcc
Q 039045          232 VKIGEGAKVGAGSVVL----IDVPARATAVGN  259 (295)
Q Consensus       232 v~IG~~~~IgagsvV~----~~Vp~~~~v~G~  259 (295)
                      ++||++|+||+||+|.    .+||+++++.|+
T Consensus       365 v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~  396 (496)
T 3c8v_A          365 LKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGY  396 (496)
T ss_dssp             EEECTTCEECTTCEEECSSCEEECSSEEECSE
T ss_pred             eEECCCCEECCCCEEecCCCcEeCCCCEEEEE
Confidence            9999999999999999    779999999987

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.30  E-value=1.5e-11  Score=113.57  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------CC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------NV  232 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------~v  232 (295)
                      ++.|++++.||+++.|.+  + +|+.++.||++|.|.++++|+.        +++||++|.|+++++|.+        ++
T Consensus       151 ~a~I~~~~~IG~g~~I~~--~-~I~~g~~IG~~~~I~~~~~Ig~--------~~~IG~~v~I~~~~~I~~~~~~~~~~~v  219 (316)
T 3tk8_A          151 PAIARRGSFIAKNVVLMP--S-YTNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPV  219 (316)
T ss_dssp             TCEEBTTCEECTTCEECS--E-EECTTCEECTTCEECTTEEECT--------TCEECTTCEECTTCEECCCCSSTTSCCC
T ss_pred             CeEEeCCcEEcCCCEECC--C-EEeCCCEECCCCEEccceEECC--------CCEECCCCEEcCCCEECCCcccccCCCc
Confidence            455666667777777766  3 7778889999999999999984        789999999999999988        89


Q ss_pred             EECCCCEECCCCEEcCCCC-CCcEEEccCcEEec
Q 039045          233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG  265 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~  265 (295)
                      +||++|+||++++|.+++. ...+++|.-+.+.+
T Consensus       220 ~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          220 IIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            9999999999999998853 33344565555554

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.30  E-value=1.2e-11  Score=113.93  Aligned_cols=100  Identities=21%  Similarity=0.375  Sum_probs=78.5

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC--------
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN--------  231 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~--------  231 (295)
                      .++.|+|.+.|..++.|+.  +++|++++.|+.++.|++++.|......    .++||++|.||++|+|.++        
T Consensus       183 ~gv~I~P~AvI~~GA~IGe--Gv~Igp~a~Vn~na~IGdg~iI~~~a~i----gv~IGdnv~IgpGa~IgG~~~~~~~~~  256 (347)
T 3r5d_A          183 AGVRIADTARVRLGAYIGE--GTTVMHEGFVNFNAGTEGPGMIEGRVSA----GVFVGKGSDLGGGCSTMGTLSGGGNIV  256 (347)
T ss_dssp             TTEEESSGGGBBTTEEECT--TEEECTTCEECTTEEESSSEEECSEECT----TCEECTTEEECTTCEECC------CCC
T ss_pred             CCcEECCcCEECCCCEECC--CCEECCCCEECCCCEECCCcEEcCCceE----eEEECCCCEECCCCEEccccCCCCccc
Confidence            3678888888888888877  7888888888888888888887654322    3899999999999999886        


Q ss_pred             CEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCC
Q 039045          232 VKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGK  267 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~  267 (295)
                      ++||++|+||+|++|  ++. ....++|.-+.+.+..
T Consensus       257 V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt  291 (347)
T 3r5d_A          257 ISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGT  291 (347)
T ss_dssp             CEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTC
T ss_pred             eEECCCCEECCCCEE--eeEECCCCEECCCCEECCCC
Confidence            999999999999999  432 4445667777776653

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.29  E-value=1.1e-11  Score=116.92  Aligned_cols=55  Identities=25%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             CCEECCCCEECCCCEEC------------------------CCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecC
Q 039045          213 HPKIGDGVLIGAGATIL------------------------GNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGG  266 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~------------------------~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~  266 (295)
                      +++||++|+||++++|.                        ++++||++|+||++++|.+++  ++++++ |..+.+.+.
T Consensus       314 ~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi-~~gsvv~~~  392 (401)
T 2ggo_A          314 DSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARI-YPGAVVNRD  392 (401)
T ss_dssp             SCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSC
T ss_pred             ceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEE-CCCCeEccc
Confidence            46899999999999997                        589999999999999999984  555554 656777665


Q ss_pred             CC
Q 039045          267 KE  268 (295)
Q Consensus       267 ~~  268 (295)
                      .+
T Consensus       393 vp  394 (401)
T 2ggo_A          393 VG  394 (401)
T ss_dssp             BC
T ss_pred             cC
Confidence            43

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.29  E-value=1.8e-11  Score=112.47  Aligned_cols=72  Identities=18%  Similarity=0.137  Sum_probs=57.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      ++++||++|+|+.++.+.++++||++|+||++++|.+++  .+++ ++|..+.+.+..+......+.|++....+
T Consensus       149 ~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a-~ig~gs~V~~dvp~~~~~~G~Pa~~~~~n  222 (305)
T 3t57_A          149 HDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFA-FIGGGSVVSQDVPKYMMVAGERAELRGLN  222 (305)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTC-EECTTCEECSBBCTTEEEETTBTEEEEEC
T ss_pred             CceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCC-EEcCCCeEcccCCCCeEEecCCcEEeccc
Confidence            467888888888889999999999999999999999994  5554 45667888887776666678998765443

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.26  E-value=1.8e-11  Score=115.50  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=25.5

Q ss_pred             CCEECCCCEECCCCEEC--------------------CCCEECCCCEECCCCEEcCCCC
Q 039045          213 HPKIGDGVLIGAGATIL--------------------GNVKIGEGAKVGAGSVVLIDVP  251 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~--------------------~~v~IG~~~~IgagsvV~~~Vp  251 (295)
                      +++||++|.|+++++|.                    ++++||++|+||++++|.++..
T Consensus       190 ~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~  248 (374)
T 2iu8_A          190 RVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRF  248 (374)
T ss_dssp             SEEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSS
T ss_pred             cceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcc
Confidence            45666677777776663                    2477777777777777765543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.24  E-value=1.6e-11  Score=106.80  Aligned_cols=76  Identities=29%  Similarity=0.296  Sum_probs=54.1

Q ss_pred             cEEcCCcEEccCCEECCCCCC--CCC----CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045          188 AVIGNNVSILHHVTLGGTGKA--SGD----RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA  261 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~--~~~----~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA  261 (295)
                      ++||++|.|+++++|.+....  -+.    ..++||++|+|+++++|.++++||++|+||++++|.+.+-....++|..+
T Consensus        80 v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags  159 (213)
T 3kwd_A           80 FHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHV  159 (213)
T ss_dssp             EEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSC
T ss_pred             eEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCC
Confidence            455666666666666532110  011    14899999999999999999999999999999999864334445666666


Q ss_pred             EE
Q 039045          262 RL  263 (295)
Q Consensus       262 ~~  263 (295)
                      .+
T Consensus       160 ~V  161 (213)
T 3kwd_A          160 LI  161 (213)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.24  E-value=1.6e-11  Score=103.41  Aligned_cols=90  Identities=18%  Similarity=0.277  Sum_probs=61.7

Q ss_pred             EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEec--
Q 039045          189 VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG--  265 (295)
Q Consensus       189 ~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~--  265 (295)
                      +||++|.|+++++|....    ..+++||++|.|+++++| .+++||++|+||++++|.+++. ....++|.-+.+.+  
T Consensus        53 ~IG~~~~I~~~~~I~~~~----~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~  127 (173)
T 1xhd_A           53 IIGDRVNVQDQCTLHQSP----QYPLILEDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGK  127 (173)
T ss_dssp             EECTTCEECTTCEEECCT----TCCEEECTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EECCCCEECCCCEEEeCC----CCCeEECCCCEECCCCEE-eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCc
Confidence            455555555555554211    136899999999999999 5699999999999999998742 33445666777663  


Q ss_pred             CCCCCCCCCCCCCccccc
Q 039045          266 GKEKTSSNEECPGESMDH  283 (295)
Q Consensus       266 ~~~~~~~~~~~p~~~~~~  283 (295)
                      ..++.....+.|++.++.
T Consensus       128 ~i~~~~vv~G~pa~~~~~  145 (173)
T 1xhd_A          128 KIPPNTLAFGRPAKVIRE  145 (173)
T ss_dssp             EECTTEEEEETTEEEEEE
T ss_pred             EeCCCCEEECCCCEECCC
Confidence            334444445788876653

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.23  E-value=3.6e-11  Score=104.77  Aligned_cols=123  Identities=20%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             eeEeCCCceecCc-eEEcC-CcCeEECCCcEEcCC---------cEEccCCEECCCCCCC-CCCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKG-ILFDH-ATGVVIGETAVIGNN---------VSILHHVTLGGTGKAS-GDRHPKIGDGVLIGAGATI  228 (295)
Q Consensus       161 ~v~Ig~~a~IG~~-v~I~~-~~~v~IG~~~~IG~~---------v~I~~gv~Igg~~~~~-~~~~~~IG~~v~IGa~a~I  228 (295)
                      .+.|++++.|.++ +.|.. +..++||++|.|+++         +.|++++.|+...... ....++||++|.||++++|
T Consensus        36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I  115 (215)
T 2wlg_A           36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEI  115 (215)
T ss_dssp             EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEE
T ss_pred             EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEE
Confidence            3556666666655 33332 113566666555543         3334444444311111 1135799999999999999


Q ss_pred             CCC-------------------CEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCC-CCCCcccccc
Q 039045          229 LGN-------------------VKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNE-ECPGESMDHT  284 (295)
Q Consensus       229 ~~~-------------------v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~-~~p~~~~~~~  284 (295)
                      ...                   ++||++|+||++++|.+++  .++ .++|..+.+.+..+...... +.|++.++..
T Consensus       116 ~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~-~vIgagsvV~~~vp~~~i~~aG~Pa~~i~~~  192 (215)
T 2wlg_A          116 RNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNN-VVVGSHTVLYKSFKEPNCVIAGSPAKIVKEN  192 (215)
T ss_dssp             ESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSS-CEECTTCEECSCCCCCSCEEETTTTEEEECS
T ss_pred             ECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCC-CEECCCCEEcCccCCCeEEEcccCCEEECCC
Confidence            853                   7999999999999999984  455 45577788887776666677 9999988775

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.22  E-value=4.5e-11  Score=115.03  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             CEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          214 PKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +.||++|.||+++++..       +++||++|+||++++|.+++  .++++ +|..+.+.+..+....+.+.|++..+..
T Consensus       378 ~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~-i~~~s~v~~~v~~~~~~~G~pa~~~~~~  456 (468)
T 1hm9_A          378 CEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSL-VGAGSTITKDVPADAIAIGRGRQINKDE  456 (468)
T ss_dssp             EEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCE-ECTTCEECSCBCTTCEECCSCCCCCCTT
T ss_pred             ccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCE-ECCCCEECCCCCCCCEEEcCcceeehhh
Confidence            46788888888888865       79999999999999999984  55555 6677888888777777788999876654

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.21  E-value=3.5e-11  Score=115.31  Aligned_cols=70  Identities=21%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             EECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          215 KIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       215 ~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +||++|+||+++++..       +++||++|+||++++|.+++. +...++|..+.+.+..+....+.+.|+......
T Consensus       374 ~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~G~p~~~~~~~  451 (459)
T 4fce_A          374 EIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVISRVKQVHIQG  451 (459)
T ss_dssp             EECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTT
T ss_pred             EECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEEecccccchhh
Confidence            6777777787877765       799999999999999999853 444566778889888887777778777654443

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.21  E-value=1.7e-11  Score=107.46  Aligned_cols=105  Identities=18%  Similarity=0.262  Sum_probs=78.6

Q ss_pred             eecCceEEcCCcCeEECCCcEE-------cCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE-------------
Q 039045          169 KIGKGILFDHATGVVIGETAVI-------GNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI-------------  228 (295)
Q Consensus       169 ~IG~~v~I~~~~~v~IG~~~~I-------G~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I-------------  228 (295)
                      .+.+++.+.+  ++.||+++.|       .++|+|++++.|++        .++||++|.|+++++|             
T Consensus        25 ~~~~~~v~~~--~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~--------~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~   94 (220)
T 4hur_A           25 QFIKPTITNE--NILVGEYSYYDSKRGESFEDQVLYHYEVIGD--------KLIIGRFCSIGPGTTFIMNGANHRMDGST   94 (220)
T ss_dssp             EESGGGCCST--TEEECTTCEEECSSSCCGGGGEESCCTTTCC--------CEEECSSCEECTTCEEECGGGCCCCSSCC
T ss_pred             EEecceEECC--CEEECCCeEECCcCCcccCCeEEeCCCEECC--------CeEECCCCEECCCCEEEECCCCcccCCcc
Confidence            3334444443  5555555555       24677777777763        6899999999999985             


Q ss_pred             ----------------------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          229 ----------------------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       229 ----------------------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                                            .++++||++|+||++|+|.+++- ....++|.-+.+.+..+......+.|++.+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~  172 (220)
T 4hur_A           95 YPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRK  172 (220)
T ss_dssp             CCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             eeeeeecccccccccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeehh
Confidence                                  57899999999999999999863 55567788899988877777778999998875

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.20  E-value=2e-11  Score=109.07  Aligned_cols=93  Identities=13%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC-------------------CEECCCCEECCCCEEc
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN-------------------VKIGEGAKVGAGSVVL  247 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~-------------------v~IG~~~~IgagsvV~  247 (295)
                      +++||++|.|+++++|.+.     ...++||++|.||++++|...                   ++||++|+||++++|.
T Consensus       105 ~v~IG~~~~Ig~~~~I~~~-----~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~  179 (252)
T 3jqy_B          105 KVIIGRRTTIGAGFEVVTD-----KCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIM  179 (252)
T ss_dssp             EEEECTTCEECTTCEEECS-----SSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEEC
T ss_pred             EEEECCCCEECCCcEEEeC-----CCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEEC
Confidence            4556666666666666421     125899999999999998765                   7999999999999999


Q ss_pred             CCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          248 IDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       248 ~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +++- ....++|.-+.+.+..+......+.|++.++.+
T Consensus       180 ~gv~IG~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  217 (252)
T 3jqy_B          180 KGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIKRN  217 (252)
T ss_dssp             TTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CCCEECCCCEECCCCEECcccCCCCEEEccCCEEEccC
Confidence            9853 455667778888877776666678899877765

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.19  E-value=5.7e-11  Score=101.84  Aligned_cols=103  Identities=19%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCc---------------EEcCCcEEccCCEECCCCCC--------CCCCCCEEC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETA---------------VIGNNVSILHHVTLGGTGKA--------SGDRHPKIG  217 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~---------------~IG~~v~I~~gv~Igg~~~~--------~~~~~~~IG  217 (295)
                      ++.|||++.|++++.|..  +++||++|               +||++|.|+++++|+.....        .....+.||
T Consensus        12 ~v~I~~~a~I~~~a~I~g--~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig   89 (194)
T 3tv0_A           12 SVKIAPGAVVCVESEIRG--DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG   89 (194)
T ss_dssp             CEEECTTCEECTTSEEES--SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred             CCEECCCCEEcCCCEEeC--CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence            455555555555555544  44444444               34555555555555432111        112457899


Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecC
Q 039045          218 DGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGG  266 (295)
Q Consensus       218 ~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~  266 (295)
                      ++++|+.++++ .+++||++|+||++++|.+++. ....++|.-+.+.+.
T Consensus        90 ~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~  138 (194)
T 3tv0_A           90 TNNVFEVGCYS-QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF  138 (194)
T ss_dssp             SSCEECTTCEE-CCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCC
T ss_pred             CcceEecceeE-eeeeecccceecceeeECCeEEECCCCEECCCCEECCC
Confidence            99999998888 5778888888888888887743 333455555555544

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.18  E-value=4.6e-11  Score=106.43  Aligned_cols=75  Identities=13%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             EEcCCcEEccCCEECCCCCCCC---------------CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCC
Q 039045          189 VIGNNVSILHHVTLGGTGKASG---------------DRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPAR  253 (295)
Q Consensus       189 ~IG~~v~I~~gv~Igg~~~~~~---------------~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~  253 (295)
                      +||++|.|+++++|........               ..+++||++|+||++|+|.++++||++|+||++++|.+..-..
T Consensus       101 ~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~  180 (247)
T 1qre_A          101 FVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN  180 (247)
T ss_dssp             EECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred             EECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECC
Confidence            7777777777777754321000               1248999999999999998889999999999999998722233


Q ss_pred             cEEEccCcEE
Q 039045          254 ATAVGNPARL  263 (295)
Q Consensus       254 ~~v~G~PA~~  263 (295)
                      ..++|..+.+
T Consensus       181 ~~~IgagsvV  190 (247)
T 1qre_A          181 NCVLEPRSAA  190 (247)
T ss_dssp             TCEECTTCEE
T ss_pred             CCEECCCCEE
Confidence            3455656655

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.18  E-value=3.8e-11  Score=101.07  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEec-
Q 039045          188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG-  265 (295)
Q Consensus       188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~-  265 (295)
                      ++||++|.|+++++|....    ..+++||++|.|+++++| .+++||++|+||++++|.+++. ....++|.-+.+.+ 
T Consensus        50 ~~IG~~~~I~~~~~I~~~~----~~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~  124 (173)
T 1v3w_A           50 IYVGKYSNVQDNVSIHTSH----GYPTEIGEYVTIGHNAMV-HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPN  124 (173)
T ss_dssp             EEECTTCEECTTCEEECBT----TBCEEECSSCEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred             EEECCCCEECCCcEEEecC----CCCeEECCCCEECCCCEE-CCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCC
Confidence            4556666666666664321    125899999999999999 6799999999999999998853 45567787887774 


Q ss_pred             -CCCCCCCCCCCCCcccc
Q 039045          266 -GKEKTSSNEECPGESMD  282 (295)
Q Consensus       266 -~~~~~~~~~~~p~~~~~  282 (295)
                       ...+.....+.|++..+
T Consensus       125 ~~i~~~~~v~G~pa~~~~  142 (173)
T 1v3w_A          125 KEIPDYSLVLGVPGKVVR  142 (173)
T ss_dssp             CEECTTEEEEETTEEEEE
T ss_pred             cEeCCCcEEECcCCEEec
Confidence             23344443467887654

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.16  E-value=1.7e-10  Score=105.53  Aligned_cols=99  Identities=23%  Similarity=0.366  Sum_probs=78.4

Q ss_pred             eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC--------
Q 039045          160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN--------  231 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~--------  231 (295)
                      .++.|||.++|.+++.|+.  +++||++++|+.++.++.++.|.+...    ..++||++|.|+++|+|.++        
T Consensus       160 ~gv~I~P~AvI~~gA~IGe--Gv~Igp~~fVniga~Ig~g~~In~~i~----iGv~IGd~v~IgpGa~IgG~~~~~~~~~  233 (332)
T 3fsy_A          160 TGVRIADADRVRLGAHLAP--GTTVMHEGFVNYNAGTLGASMVEGRIS----AGVVVGDGSDVGGGASIMGTLSGGGTHV  233 (332)
T ss_dssp             TTCEESCGGGBBTTEEECT--TCEECTTCEECTTEEESSCCEECSEEC----TTCEECTTCEECTTCEECSBCC---CCB
T ss_pred             CCcEECCcCEECCCCEECC--CCEEccccEEEECCeECcCCEECCcee----cceEECCCCEECCCCEEcCCCCCCCccc
Confidence            3677888888888888877  788888888888888888888764322    13899999999999999886        


Q ss_pred             CEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecC
Q 039045          232 VKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGG  266 (295)
Q Consensus       232 v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~  266 (295)
                      ++||++|+||++++|  ++. ....++|.-+.+.+.
T Consensus       234 V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkd  267 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAG  267 (332)
T ss_dssp             CEECTTCEECTTCEE--CSCBCSSCEECTTCEECTT
T ss_pred             eEECCCCEECCCCEE--eeEECCCCEECCCCEECCC
Confidence            999999999999999  543 444566766766665

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.02  E-value=2.8e-10  Score=110.94  Aligned_cols=84  Identities=13%  Similarity=0.225  Sum_probs=61.0

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||++|+|++  +++| .+++||++|.|+++++|.         +++||++|+||.+++|. +++||++|+||++|+|
T Consensus       291 ~v~IG~~~~I~~--~a~I-~~v~IG~~~~I~~~~~I~---------~~vIG~~~~Ig~~a~I~-gv~IGd~v~IG~~a~I  357 (496)
T 3c8v_A          291 DTVIGENVLVSQ--RAYL-DNAWMGKGSNAQENCYII---------NSRLERNCVTAHGGKII-NAHLGDMIFTGFNSFL  357 (496)
T ss_dssp             SCEECTTCEECT--TCEE-EEEEECTTCEECTTCEEE---------EEEEEESCEECTTCEEE-SEEEEETCEECTTCEE
T ss_pred             CeEECCCCEECC--CcEE-eceEecCCCEECCCceEe---------ceEeCCCCEECCCcEEc-CceECCCcEECCCCEE
Confidence            344445555544  3444 345566666666666664         58999999999999995 5999999999999999


Q ss_pred             cCC------CCCCcEEEccCcEEe
Q 039045          247 LID------VPARATAVGNPARLV  264 (295)
Q Consensus       247 ~~~------Vp~~~~v~G~PA~~i  264 (295)
                      .++      |++++++ |..+.+.
T Consensus       358 ~~~~~~~v~IG~~a~I-GagsvV~  380 (496)
T 3c8v_A          358 QGSESSPLKIGDGCVV-MPHTIID  380 (496)
T ss_dssp             ECCSSSCEEECTTCEE-CTTCEEE
T ss_pred             eCCCCcceEECCCCEE-CCCCEEe
Confidence            999      5565544 7777776

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.01  E-value=1.3e-09  Score=101.33  Aligned_cols=54  Identities=28%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC------CCCCcEEEccCcEEecCCCC
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID------VPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~------Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      ..|+++|.|+++|+|. +++|++++.|+++++|..+      ++++..+.|+ |++.+...+
T Consensus       163 s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~-a~V~R~~~~  222 (334)
T 2pig_A          163 SRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGH-ARVIAGTEE  222 (334)
T ss_dssp             CEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEECTT-CEEECCSST
T ss_pred             cEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEeee-EEEeccCCH
Confidence            4555566777777775 7778888888999999888      7899999998 999987653

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.96  E-value=1.4e-09  Score=95.36  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             eEeCCCceecCceEEcCCc-----------CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCE---------ECCC--
Q 039045          162 VDIHPAAKIGKGILFDHAT-----------GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK---------IGDG--  219 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~-----------~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~---------IG~~--  219 (295)
                      +.+++++.||+++++++..           ...++++++||++|.|+++|+|...+.    .|+.         +|++  
T Consensus        29 ~~~~~~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~----~h~~~~~~~~~~~i~~~~~  104 (219)
T 4e8l_A           29 TITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGA----NHRMDGSTYPFHLFRMGWE  104 (219)
T ss_dssp             GCCSSSEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGG----CCCCSSCCCCGGGGCTTCG
T ss_pred             cEECCCEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEEEeCCC----cceecCCCcceeEecCccc
Confidence            3455555555555555420           233466778888888888888742210    1222         2332  


Q ss_pred             --CEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          220 --VLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       220 --v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                        +.+..++.+.++++||++|+||++++|.+++. ....++|.-+.+.+..+......+.|++.++..
T Consensus       105 ~~~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i~~r  172 (219)
T 4e8l_A          105 KYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  172 (219)
T ss_dssp             GGCCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             ccccccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEeeccc
Confidence              34445566677888888888888888888743 334556777888777766666678999877653

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.93  E-value=2.2e-09  Score=101.21  Aligned_cols=98  Identities=23%  Similarity=0.392  Sum_probs=69.0

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCC-cEEcCCcE-EccCCEECCCCCCCCCCCCEECCCCEECCCCEEC----CC---
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGET-AVIGNNVS-ILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL----GN---  231 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~-~~IG~~v~-I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~----~~---  231 (295)
                      ++.|++++.|+.++.|+.  +++|+++ ++|+.++. ||+ |.|+.    ....+++||++|.|+++++|.    ++   
T Consensus       217 gv~I~p~a~I~~~a~IG~--gv~Ig~g~a~Ig~nv~vIG~-~~I~~----~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~  289 (387)
T 2rij_A          217 NTRILESSKVRMGASLAA--GTTIMPGASYVNFNAGTTGA-CMVEG----RISSSAIVGEGSDVGGGASILGVLSGTSGN  289 (387)
T ss_dssp             TCEESCGGGBBTTCBCCT--TCEECSSSCEECTTCEESSC-CEECS----EECTTCEECTTCEECTTCEECCBCSSTTCC
T ss_pred             CEEEcCCCEECCCeEEcC--CCEEeCCeeEECCCcEEECC-EEEee----EECCCCEECCCCEECCCceEcceecCCCcc
Confidence            677888888887777776  7777775 77777777 666 66643    111468999999999999743    33   


Q ss_pred             -CEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCC
Q 039045          232 -VKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGK  267 (295)
Q Consensus       232 -v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~  267 (295)
                       ++||++|+||++++  .++. ....++|.-+.+.+..
T Consensus       290 ~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv  325 (387)
T 2rij_A          290 AISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGT  325 (387)
T ss_dssp             BCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTC
T ss_pred             CeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCc
Confidence             99999999999999  4432 3334555555555543

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.93  E-value=1.3e-09  Score=103.86  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=52.1

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV  246 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV  246 (295)
                      ++.||++|+| +  +++|. +++||++|.|+++++|.         +++||++|+||+||+|.+ ++||++|+||+|++|
T Consensus       324 ~~~ig~~~~I-~--~~~i~-~~~ig~~~~I~~~~~i~---------~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i  389 (420)
T 3brk_X          324 SSVVSGDCII-S--GAALN-RSLLFTGVRANSYSRLE---------NAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIV  389 (420)
T ss_dssp             SCEECSSCEE-E--SCEEE-SCEECTTCEECTTCEEE---------EEEECTTCEECTTCEEEE-EEECTTCEECTTCEE
T ss_pred             CCEECCCCEE-c--CCEEe-CcEEcCCCEECCCCEEc---------ceEEcCCCEECCCCEEec-eEECCCCEECCCCEE
Confidence            4455555555 3  44443 46777777777777774         579999999999999975 999999999999999


Q ss_pred             cCC
Q 039045          247 LID  249 (295)
Q Consensus       247 ~~~  249 (295)
                      .++
T Consensus       390 ~~~  392 (420)
T 3brk_X          390 GED  392 (420)
T ss_dssp             SSC
T ss_pred             eCC
Confidence            977

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.91  E-value=9.5e-10  Score=95.63  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=57.9

Q ss_pred             CCEECCCCEECCCCEE-----------------------------------CCCCEECCCCEECCCCEEcCCCC-CCcEE
Q 039045          213 HPKIGDGVLIGAGATI-----------------------------------LGNVKIGEGAKVGAGSVVLIDVP-ARATA  256 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I-----------------------------------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v  256 (295)
                      .++||++|.|+++|+|                                   .++++||++|+||++++|.+++. ....+
T Consensus        58 ~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~i  137 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAI  137 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             CcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCE
Confidence            5678888888888776                                   34789999999999999999864 55567


Q ss_pred             EccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          257 VGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       257 ~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +|.-+.+.+..+......+.|++.+++.
T Consensus       138 IgagsvV~~dVp~~~vv~G~PAk~i~~~  165 (212)
T 3eev_A          138 IASRSVVTKDVAPYEVVGSNPAKHIKFR  165 (212)
T ss_dssp             ECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             ECCCCEEccccCCCcEEEecCCEEEecc
Confidence            7888888888777777789999987764

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=98.86  E-value=4.2e-09  Score=101.00  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=15.1

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          220 VLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       220 v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      +.||++++| ++++||++|+||+|++|..
T Consensus       389 ~~Ig~~~~i-~~~~Ig~~~~IG~~~~i~~  416 (451)
T 1yp2_A          389 IGIGKNCHI-KRAIIDKNARIGDNVKIIN  416 (451)
T ss_dssp             SEECTTCEE-ESEEECTTCEECTTCEECC
T ss_pred             EEECCCCEE-eccEeCCCcEECCCCEEeC
Confidence            455555554 3455555555555555554

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=98.85  E-value=4.6e-09  Score=100.75  Aligned_cols=30  Identities=30%  Similarity=0.333  Sum_probs=14.4

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGS  244 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~Igags  244 (295)
                      +.||++++|+ +++|+.+|.||++|+|.+++
T Consensus       389 ~~Ig~~~~i~-~~~Ig~~~~IG~~~~i~~~~  418 (451)
T 1yp2_A          389 IGIGKNCHIK-RAIIDKNARIGDNVKIINKD  418 (451)
T ss_dssp             SEECTTCEEE-SEEECTTCEECTTCEECCSS
T ss_pred             EEECCCCEEe-ccEeCCCcEECCCCEEeCCc
Confidence            4555555543 34444455555555544443

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.79  E-value=5.1e-09  Score=91.11  Aligned_cols=122  Identities=17%  Similarity=0.187  Sum_probs=72.0

Q ss_pred             eeEeCCCceecCc-------eEEcCCcCeEECCCcEEcCCcEEccCCEECCC---CCCCC--CCCCEECCC----CEECC
Q 039045          161 AVDIHPAAKIGKG-------ILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKASG--DRHPKIGDG----VLIGA  224 (295)
Q Consensus       161 ~v~Ig~~a~IG~~-------v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~---~~~~~--~~~~~IG~~----v~IGa  224 (295)
                      ++.||+++.|+++       +.+.+  ...+++.++||++|.|+++++|...   ....+  ...+.++++    +.+..
T Consensus        29 ~i~IG~~~~I~~~~~~~i~~~~i~~--~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~  106 (209)
T 1mr7_A           29 NVEVGEYSYYDSKNGETFDKQILYH--YPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLD  106 (209)
T ss_dssp             TEEECTTCEEECSSSCCGGGGEESC--CGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred             CeEECCCcEEcCCCceEEeceEEee--ccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccc
Confidence            4556666666553       33333  3345666777888888887776321   00000  011223332    34555


Q ss_pred             CCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          225 GATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       225 ~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      ++.+.++++||++|+||++++|.+++. ....++|.-+.+.+..+......+.|++.++..
T Consensus       107 ~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~~G~Pa~~i~~~  167 (209)
T 1mr7_A          107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (209)
T ss_dssp             GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             cccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEEEeeCCEEeecc
Confidence            566777788888888888888877642 333455666777777666666678899877653

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=98.75  E-value=2.8e-08  Score=96.85  Aligned_cols=69  Identities=14%  Similarity=0.277  Sum_probs=48.3

Q ss_pred             CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCC-CCCCCCCccc
Q 039045          213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTS-SNEECPGESM  281 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~-~~~~~p~~~~  281 (295)
                      ++.||++|.||+|+++..       .++||++|+||.++.|...|. ....++|.-+.+.+..+.+. ...+.|+...
T Consensus       386 d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~~~~~~~~~~  463 (501)
T 3st8_A          386 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNI  463 (501)
T ss_dssp             SEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCC
T ss_pred             CceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeEEeccCceec
Confidence            478999999999988742       488999999999999988753 33445566667766665443 2344566543

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.68  E-value=6.4e-08  Score=84.35  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          220 VLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       220 v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +.++.++.+.++++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus        99 ~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  164 (212)
T 1xat_A           99 AGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  164 (212)
T ss_dssp             GGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEEEccCCEEEccc
Confidence            44556666666777777777777777777642 333455777888777766666678999877654

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=98.66  E-value=4.3e-08  Score=91.11  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=18.9

Q ss_pred             eEeCC-CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045          162 VDIHP-AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL  202 (295)
Q Consensus       162 v~Ig~-~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I  202 (295)
                      +.|++ ++.|++++.|++  ++.|+++|+||++|.|++++.|
T Consensus        59 ~~I~~~~a~I~~~a~I~~--~~~I~g~~~Ig~~~~Ig~~~~I   98 (334)
T 2pig_A           59 CWIYDENAMAFAGTEITG--NARITQPCTLYNNVRIGDNVWI   98 (334)
T ss_dssp             CEECCTTCEEETTCEECT--TCEEESSCEEESSCEECTTCEE
T ss_pred             eEEcCCCeEEcCCcEECC--CcEEeeeeeECCCcEECCCCEE
Confidence            44555 455555555544  4444444444444444444444

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.57  E-value=8e-08  Score=91.36  Aligned_cols=69  Identities=13%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       186 ~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      .++.||++|.| .+++|.         +++||++|.||++|+|. +++||++|.||+|++|...+-...+.+|..+++.+
T Consensus       323 ~~~~ig~~~~I-~~~~i~---------~~~ig~~~~I~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          323 VSSVVSGDCII-SGAALN---------RSLLFTGVRANSYSRLE-NAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             ESCEECSSCEE-ESCEEE---------SCEECTTCEECTTCEEE-EEEECTTCEECTTCEEEEEEECTTCEECTTCEESS
T ss_pred             cCCEECCCCEE-cCCEEe---------CcEEcCCCEECCCCEEc-ceEEcCCCEECCCCEEeceEECCCCEECCCCEEeC
Confidence            46777777777 777774         57899999999998884 78888888888888777543334445555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	3e-76
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	1e-17
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	1e-14
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	6e-14
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	5e-13
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.002
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.002
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	9e-12
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	2e-11
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	2e-05
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	4e-11
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	4e-11
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	2e-04
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	2e-10
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	4e-07
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	6e-10
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	4e-04
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	5e-08
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	2e-07
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	2e-06
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	3e-06
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	7e-06
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	3e-06
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	8e-05
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	1e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	2e-04

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score =  230 bits (588), Expect = 3e-76
 Identities = 130/236 (55%), Positives = 173/236 (73%)

Query: 29  VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFL 88
           VW  I+ EA+  AE+EP LAS+ +STIL H +L  +L++ L NKL +  + +  L ++  
Sbjct: 5   VWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIE 64

Query: 89  DTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPL 148
           + + S+P++   A  D++A R RDPA   +S  LL  KGF A Q++R+ H LW Q+R+ L
Sbjct: 65  EAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSL 124

Query: 149 ALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA 208
           AL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK 
Sbjct: 125 ALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKE 184

Query: 209 SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
           SGDRHPK+ +GV+IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct: 185 SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTG--------- 206
           I   F  D      +G     +    ++      IG+N  +   V +             
Sbjct: 61  IEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARN 120

Query: 207 -KASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
             A   +   IG+ V IG  A I   V IG+   V +G+VV  DVP      GNPAR++
Sbjct: 121 SGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARII 179

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK------- 207
            +             IG+    +    +V   T  IG+NV I  +VTL  TG        
Sbjct: 62  WVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELR 121

Query: 208 ---ASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264
                      IG+ V IG+   I   V IG+ + +GAGS+V  D+P    A G P R++
Sbjct: 122 KNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVI 181

Query: 265 G 265
            
Sbjct: 182 R 182

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           ++  A + +G + D  T   +G  A IG NV +   V +GG  +        I D   IG
Sbjct: 128 VNIGAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIG 185

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPA 252
           A + ++  V + EG+ +  G  +      
Sbjct: 186 ARSEVVEGVIVEEGSVISMGVYLGQSTRI 214

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 64.3 bits (155), Expect = 5e-13
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK 269
              IG+ V +G+ +TI+  V++G+ + VGAGS +  DVPA A A+G   ++   K++
Sbjct: 142 KTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQIN--KDE 196

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSV 245
           +I   V I A  T+ G  KIG    +  G+ 
Sbjct: 16  EIASEVQIEANVTLKGQTKIGAETVLTNGTY 46

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHV 200
           A  I    +I   +  +    V +     IG    + +  
Sbjct: 8   ATYIDIDVEIASEVQIEA--NVTLKGQTKIGAETVLTNGT 45

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.9 bits (147), Expect = 9e-12
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 169 KIGKGILFD-HATGVVIGETAVIGNNVSILHHVTLGGTGKASGD-------RHPKIGDGV 220
            IG        A  ++ G         S      +      +G            IG  V
Sbjct: 56  VIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEV 115

Query: 221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265
            IG  A  +  V++G GA +G+ ++V  DV   A   GNPAR + 
Sbjct: 116 WIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIR 160

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDR-------HPKI 216
           ++   KIGK         +++       +  +   ++   G  K               I
Sbjct: 57  LNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTII 116

Query: 217 GDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTS 271
           G+ V IG    I+  VKIG+GA V A SVV+ D+     A GNPA  +  K++  
Sbjct: 117 GNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEI--KQRFD 169

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 15/85 (17%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVL 221
           + ++P                 I        NV +  +            ++ +  D  +
Sbjct: 6   MKMYPIEGNKSV--------QFIKPILEKLENVEVGEYSYYD-------SKNGETFDKQI 50

Query: 222 IGAGATILGNVKIGEGAKVGAGSVV 246
           +     +   +KIG+   +G G  +
Sbjct: 51  LYHYPILNDKLKIGKFCSIGPGVTI 75

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 58.8 bits (141), Expect = 4e-11
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 222 IGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262
           +G  + +L N+ + + + +G G+ ++ +   +   VG PA+
Sbjct: 151 LGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAK 191

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 60.2 bits (145), Expect = 4e-11
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 184 IGETAVIGNNVSILHHVTLGGTGKASGDR-----HPKIGDGVLIGAGATILGNVKIGEGA 238
           + E A+I  N  + HHV +GG  +  G          I     I     I   V+I   A
Sbjct: 232 VAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRA 291

Query: 239 KVGAGSVVLIDVPARATAVGNPA 261
            V A     I +       G   
Sbjct: 292 AVIAFDDNTIHLRGPKVINGEDR 314

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
            +      I  N  I    TL          + +IGD V I   A I    +I +   + 
Sbjct: 64  AMAFAGTEITGNARITQPCTLYN--------NVRIGDNVWID-RADISDGARISDNVTIQ 114

Query: 242 AGSVVLIDVPARATAVGNPARLVGG 266
           + SV           V N + ++  
Sbjct: 115 SSSVREECAIYGDARVLNQSEILAI 139

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK 215
           + D    D+      G+ +  D    V+I     +G+ V I     +  +          
Sbjct: 3   LRDPARFDLRGTLTHGRDVEIDT--NVIIEGNVTLGHRVKIGTGCVIKNS---------V 51

Query: 216 IGDGVLIGAGATILGNVKIGEGAKVG 241
           IGD   I    T++ +  +     +G
Sbjct: 52  IGDDCEISPY-TVVEDANLAAACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241
             +  T   G +V I  +V + G        +  +G  V IG G  ++ N  IG+  ++ 
Sbjct: 9   FDLRGTLTHGRDVEIDTNVIIEG--------NVTLGHRVKIGTG-CVIKNSVIGDDCEIS 59

Query: 242 AGSVV 246
             +VV
Sbjct: 60  PYTVV 64

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (132), Expect = 6e-10
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 183 VIGETAVIGNNVSILHHV-----TLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237
                     +  I  +V     T+      +      IGD V +G+   ++  V +G+G
Sbjct: 108 SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKG 167

Query: 238 AKVGAGSVVLIDVPARATAVG-NPARLVGGKEK 269
           A + AG+ V  +V   A A+   P     G  +
Sbjct: 168 ATIAAGTTVTRNVGENALAISRVPQTQKEGWRR 200

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSV 245
             G  V I     I GNV +G   K+G G V
Sbjct: 16  THGRDVEIDTNVIIEGNVTLGHRVKIGTGCV 46

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 50.6 bits (120), Expect = 5e-08
 Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 22/132 (16%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I  +A +            ++ E A IG N  I                   +G  V IG
Sbjct: 2   IDKSAFVHPT--------AIVEEGASIGANAHIGPFCI--------------VGPHVEIG 39

Query: 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDH 283
            G  +  +V +    K+G  + +                    + +             H
Sbjct: 40  EGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIH 99

Query: 284 TSFISEWSDYII 295
              +       +
Sbjct: 100 RGTVQGGGLTKV 111

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 17/128 (13%)

Query: 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227
           +KI K          +I   A I   V I     +G           K+ +GV +    T
Sbjct: 1   SKIAKT--------AIISPKAEINKGVEIGEFCVIGD--------GVKLDEGVKLHNNVT 44

Query: 228 ILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFI 287
           + G+  +G+  ++   +V+    P      G  + L+ G++             +     
Sbjct: 45  LQGHTFVGKNTEIFPFAVLGTQ-PQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKK 103

Query: 288 SEWSDYII 295
           +   D  +
Sbjct: 104 TLIGDKNL 111

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG 223
           I P A+I KG+        VIG+   +   V + ++VTL   G     ++ +I    ++G
Sbjct: 9   ISPKAEINKGVEIGE--FCVIGDGVKLDEGVKLHNNVTLQ--GHTFVGKNTEIFPFAVLG 64

Query: 224 AGATILGNVKIGEGAKVG 241
                L          +G
Sbjct: 65  TQPQDLKYKGEYSELIIG 82

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 210 GDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244
             + P+I     +   A ++G+V + E   V   +
Sbjct: 7   NGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 38/137 (27%)

Query: 162 VDIHPAAKIGKGILFDHAT---GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK--- 215
             IHP+A +      ++A     VV+ E   +  +  +   +     GK S  +      
Sbjct: 11  PRIHPSAFVD-----ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIH 65

Query: 216 -------------------------IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI-- 248
                                    +G+ V+IG  + IL   KIG+   +GAG+VV    
Sbjct: 66  TSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNK 125

Query: 249 DVPARATAVGNPARLVG 265
           ++P  +  +G P ++V 
Sbjct: 126 EIPDYSLVLGVPGKVVR 142

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 210 GDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243
            ++ PKI     I    TI G+V +GE + +   
Sbjct: 9   KEKKPKIASSAFIADYVTITGDVYVGEESSIWFN 42

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 52/145 (35%)

Query: 163 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG------------------ 204
           +  P  KI             I +   I  +V +    ++                    
Sbjct: 10  EKKP--KIASS--------AFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVN 59

Query: 205 ----------------------TGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA 242
                                  G         I    LIG G+ IL   +IGEGA +GA
Sbjct: 60  VQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGA 119

Query: 243 GSVVLI--DVPARATAVGNPARLVG 265
           GS+V     +P    A G PA+++ 
Sbjct: 120 GSLVSQGKKIPPNTLAFGRPAKVIR 144

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 211 DRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID 249
              P I     I   A+++G V IG    V   + +  D
Sbjct: 20  PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSD 58

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 28/106 (26%)

Query: 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG------------------ 203
             I   A I   +L          +             + +G                  
Sbjct: 37  SCISEGAIIEDSLLMGAD--YYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD 94

Query: 204 ---GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246
                 K +     +  DG  I +G        + + A + +G ++
Sbjct: 95  NVKIINKDNVQEAARETDGYFIKSGIVT-----VIKDALIPSGIII 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	100.0
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.91
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.9
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.81
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.79
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.78
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.77
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.76
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.76
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.7
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.7
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.7
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.65
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.63
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.62
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.55
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.51
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.44
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.41
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.39
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.36
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.11
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.1
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.09
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.09
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.06
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.02
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.83
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	98.81
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	98.74
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	98.73
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.35
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	97.98
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	97.98

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3.1e-55  Score=390.76  Aligned_cols=239  Identities=54%  Similarity=0.844  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHH
Q 039045           27 AWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLR  106 (295)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~  106 (295)
                      .++|++||+||+..+++||.|++||+..||+|++|+++|+|+||++|.+..+.+..+.+++.+.+..+|++.+.++.|+.
T Consensus         3 ~~iW~~i~~ea~~~~~~EP~L~~~~~~~IL~~~s~~~aLs~~la~kL~~~~~~~~~~~~i~~e~~~~~~~i~~~~~~Dl~   82 (241)
T d1ssqa_           3 LDVWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIEEAYQSNPSIIDCAACDIQ   82 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSSSHHHHHHHHHHHHHCBTTBCHHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCcHHHHHHHHhhhcCCCHHHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECC
Q 039045          107 AARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGE  186 (295)
Q Consensus       107 ~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~  186 (295)
                      +.+.+||+|..+..++++|+||++++.||++||+|..+++.++..++.+....++++||+++.||++++|+|+++++||+
T Consensus        83 a~~~rDpa~~~~~~~~L~~~Gf~Al~~yRiah~l~~~~~~~la~~i~~~~~~~~g~~I~~~~~Ig~g~~i~h~~givig~  162 (241)
T d1ssqa_          83 AVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGE  162 (241)
T ss_dssp             HHHHHCTTCCCTHHHHHHCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEESSCTTCEECT
T ss_pred             HHHccCccccceeeeeehhhhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhheeeccccCCEEccCcccCccceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045          187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG  265 (295)
Q Consensus       187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~  265 (295)
                      ++.||+||.|.+++++++++...+.++++||+||+||+||+|++|++||++|+||+||+|++|||++++++|+|||++.
T Consensus       163 ~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdVp~~~vv~G~PAr~I~  241 (241)
T d1ssqa_         163 TSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVS  241 (241)
T ss_dssp             TCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEECC
T ss_pred             cceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCCCCCCCEEEecCcEEeC
Confidence            9999999999999999999888888999999999999999999999999999999999999999999999999999873

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.4e-24  Score=184.39  Aligned_cols=109  Identities=25%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC----CCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA----SGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~----~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ++.||++++|+.+|+|..+..++||++|.||++|+|++..........    ....+++||++||||++|+|+++++||+
T Consensus        74 nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~  153 (200)
T d1krra_          74 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  153 (200)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence            344444444444444444334444444444444444432222211111    1124689999999999999999999999


Q ss_pred             CCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045          237 GAKVGAGSVVLIDVPARATAVGNPARLVGGKEK  269 (295)
Q Consensus       237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~  269 (295)
                      +|+||+||+|++|||++++++|+|||++++..+
T Consensus       154 ~~vIgagSvV~kdvp~~~iv~G~PArvik~~~~  186 (200)
T d1krra_         154 NSVIGAGSIVTKDIPPNVVAAGVPCRVIREIND  186 (200)
T ss_dssp             TCEECTTCEECSCBCTTEEEETTTTEEEEECCG
T ss_pred             CcEEeCCCEEeeEcCCCcEEEEeCCEEEEeCCH
Confidence            999999999999999999999999999998764

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.1e-24  Score=182.11  Aligned_cols=110  Identities=24%  Similarity=0.296  Sum_probs=85.8

Q ss_pred             ccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC----CCCCCCEECCCCEECCCCEECCCC
Q 039045          157 SDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA----SGDRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       157 ~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~----~~~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      ....++.||+++.|+.+|+|.++..++||++|.||++|.|+++++++.....    ....+++||++||||++|+|++++
T Consensus        68 ~~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv  147 (182)
T d1ocxa_          68 DYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGV  147 (182)
T ss_dssp             SSSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTC
T ss_pred             EeccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcE
Confidence            3344566666667777776666666777777777777777766554432111    112468999999999999999999


Q ss_pred             EECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          233 KIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      +||++|+||+||+|++|+|++++++|+|||++++
T Consensus       148 ~IG~~~vIgagsvV~kdvp~~~i~~G~PAk~ir~  181 (182)
T d1ocxa_         148 TIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             EECTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             EECCCCEECCCCEEccCCCCCeEEEeeCCEEEee
Confidence            9999999999999999999999999999999986

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.81  E-value=4e-20  Score=157.73  Aligned_cols=53  Identities=23%  Similarity=0.503  Sum_probs=50.8

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV  264 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i  264 (295)
                      .+++||++|+||+|++|.++++||++|+||+||+|++|+|++++++|+|||.+
T Consensus       141 g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~G~PAk~i  193 (193)
T d3bswa1         141 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM  193 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCCCC
T ss_pred             ccceeeccccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEEEEeCCEEC
Confidence            37899999999999999999999999999999999999999999999999864

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=2.9e-20  Score=163.91  Aligned_cols=170  Identities=15%  Similarity=0.166  Sum_probs=126.5

Q ss_pred             CCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHH
Q 039045           10 SPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLD   89 (295)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~   89 (295)
                      +++..+.+.+.+++...+.|.+.+++|++++.++||++.++++ .+|.||+|++.++||+||+|+....           
T Consensus        54 ~~~~~~~~i~~e~~~~~~~i~~~~~~Dl~a~~~rDpa~~~~~~-~~L~~~Gf~Al~~yRiah~l~~~~~-----------  121 (241)
T d1ssqa_          54 MPAISLREIIEEAYQSNPSIIDCAACDIQAVRHRDPAVELWST-PLLYLKGFHAIQSYRITHYLWNQNR-----------  121 (241)
T ss_dssp             BCHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHCTTCCCTHH-HHHHCHHHHHHHHHHHHHHHHTTTC-----------
T ss_pred             cchhhHHHHHHHHHhcCHHHHHHHHHHHHHHHccCccccceee-eeehhhhHHHHHHHhhhhhhhhhhh-----------
Confidence            3444466677777777788999999999999999999999887 5999999999999999999965421           


Q ss_pred             hccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChh-HHHHHhhccccceeeEeCCCc
Q 039045           90 TFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRP-LALALQSRISDVFAVDIHPAA  168 (295)
Q Consensus        90 ~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~-~~~~~~~~~~~~~~v~Ig~~a  168 (295)
                           +.+...+.                                +..+..+.-...+ ....-+.++.+..++.||+++
T Consensus       122 -----~~la~~i~--------------------------------~~~~~~~g~~I~~~~~Ig~g~~i~h~~givig~~~  164 (241)
T d1ssqa_         122 -----KSLALYLQ--------------------------------NQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETS  164 (241)
T ss_dssp             -----HHHHHHHH--------------------------------HHHHHHHSCEECTTCEECSSCEESSCTTCEECTTC
T ss_pred             -----HHHHHHHH--------------------------------HHHhhheeeccccCCEEccCcccCccceEEEeccc
Confidence                 11111122                                2222222211111 011113456667799999999


Q ss_pred             eecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          169 KIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       169 ~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      .||+++.|.+  ++++|..        ++||+||.||.|++|.+        +++||+++.||+|++|.++  |.+++++
T Consensus       165 ~ig~~~~i~~--~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg--------~v~IG~~a~IgAgsvV~kd--Vp~~~vv  232 (241)
T d1ssqa_         165 VIENDVSILQ--GVTLGGTGKESGDRHPKVREGVMIGAGAKILG--------NIEVGKYAKIGANSVVLNP--VPEYATA  232 (241)
T ss_dssp             EECTTCEECT--TCEEECCSSSCSSCSCEECTTCEECTTCEEES--------SCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             eecCCeeecc--cccccccccCCCCCCCccCCCeEECCCCEEcC--------CcEECCCCEECCCCEECCC--CCCCCEE
Confidence            9999999999  7787754        68999999999999875        6999999999999999998  4666644

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.78  E-value=4.1e-19  Score=152.51  Aligned_cols=106  Identities=30%  Similarity=0.352  Sum_probs=78.8

Q ss_pred             eeEeCCCceecC-------ceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCC--------------------------
Q 039045          161 AVDIHPAAKIGK-------GILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK--------------------------  207 (295)
Q Consensus       161 ~v~Ig~~a~IG~-------~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~--------------------------  207 (295)
                      ++.||++++|+.       .+.+++  .+.|++++.||++|.|+++|+|...+.                          
T Consensus        29 nV~IG~~~~I~~~~~~~~~~~~i~~--~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~  106 (203)
T d1mr7a_          29 NVEVGEYSYYDSKNGETFDKQILYH--YPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLD  106 (203)
T ss_dssp             TEEECTTCEEECSSSCCGGGGEESC--CGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred             CEEECCCcEEcCCcCcccCceEEee--eCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccc
Confidence            455555555432       223333  445566667777777777776632110                          


Q ss_pred             -CCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          208 -ASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       208 -~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                       .....+++||++|+||++|+|+++++||++|+||+||+|++|||++++++|+|||+++++.
T Consensus       107 ~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r~  168 (203)
T d1mr7a_         107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRF  168 (203)
T ss_dssp             GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEESS
T ss_pred             cccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEeccC
Confidence             0012468999999999999999999999999999999999999999999999999999864

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=7.2e-19  Score=151.62  Aligned_cols=57  Identities=35%  Similarity=0.508  Sum_probs=54.6

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .+++||++|+||++|+|+++++||++|+||+||+|++|+|++++++|+|||+++++.
T Consensus       107 g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk~ik~R~  163 (208)
T d1xata_         107 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKRF  163 (208)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEESS
T ss_pred             CCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEEEecCCEEEeccC
Confidence            468999999999999999999999999999999999999999999999999999864

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.76  E-value=1.7e-18  Score=153.78  Aligned_cols=55  Identities=36%  Similarity=0.404  Sum_probs=52.0

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      .+++||++|+||.+++|.++++||++|+||++|+|++|||++++++|+||++.+.
T Consensus       138 g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kdVp~~~i~~G~PA~~~g~  192 (259)
T d1j2za_         138 GHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGL  192 (259)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEEEE
T ss_pred             ccccccccceecceeeeecccEeccceeeeeeeeeccccccceeEEecccccccc
Confidence            4588999999999999999999999999999999999999999999999999753

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=1.2e-18  Score=146.87  Aligned_cols=55  Identities=36%  Similarity=0.636  Sum_probs=52.3

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG  266 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~  266 (295)
                      .++.||++||||.+++|+++++||++++||+||+|++|+|++++++|+|||++|+
T Consensus       141 ~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~G~Pak~~k~  195 (196)
T d1g97a1         141 YKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKD  195 (196)
T ss_dssp             CCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCCCCCCCCC
T ss_pred             eeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEEecCCEEecC
Confidence            3577999999999999999999999999999999999999999999999999875

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.70  E-value=5.8e-17  Score=144.12  Aligned_cols=108  Identities=26%  Similarity=0.299  Sum_probs=88.7

Q ss_pred             eeeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECC
Q 039045          160 FAVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       160 ~~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ..+.||+++.|+.++.|+.++     .++||+++.|.+++.|+++|.||.......    ..+++||++|+||.++.|.+
T Consensus        82 ~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~  161 (262)
T d2jf2a1          82 TRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQ  161 (262)
T ss_dssp             CEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceecc
Confidence            357899999999999887643     167787777777777777766665433221    25799999999999999999


Q ss_pred             CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK  267 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~  267 (295)
                      +++||++++||++|+|++|||++++++|+||+..+..
T Consensus       162 ~v~IG~~a~igagS~Vtkdvp~~~~~~G~PA~~~~~n  198 (262)
T d2jf2a1         162 FCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVN  198 (262)
T ss_dssp             TCEECTTCEECSSCEECSBBCTTEEEEEBTEEEEEEC
T ss_pred             ccEeehhceeeccceEeecCCcccccCCCCceeeeee
Confidence            9999999999999999999999999999999997643

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=2.9e-17  Score=136.76  Aligned_cols=57  Identities=39%  Similarity=0.634  Sum_probs=52.9

Q ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .+++|+++|+||.+++|+++++||++|+||++|+|++  ++|++++++|+|||++++..
T Consensus        89 ~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~  147 (172)
T d1xhda_          89 HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELT  147 (172)
T ss_dssp             ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             cccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcEEECCCC
Confidence            3578999999999999999999999999999999995  69999999999999998765

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=1.5e-17  Score=138.54  Aligned_cols=106  Identities=25%  Similarity=0.367  Sum_probs=78.7

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEcc---------CCEECCCCC-------------------CCCCC
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILH---------HVTLGGTGK-------------------ASGDR  212 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~---------gv~Igg~~~-------------------~~~~~  212 (295)
                      ...||++++|+++++|..  +++||++|.||++|.|..         ++.++....                   .....
T Consensus        10 ~~~I~~~~~I~~~a~I~g--~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
T d1v3wa_          10 KPRIHPSAFVDENAVVIG--DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH   87 (173)
T ss_dssp             CCEECTTCEECTTSEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE
T ss_pred             CCEECcCcEECCCCEEeC--ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeee
Confidence            345777777777777765  667777777666666542         222221110                   00013


Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE  268 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~  268 (295)
                      .+.||++|+||++|+|.++++||++|+||+||+|++  +||++++++|+|||++++.+
T Consensus        88 ~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~  145 (173)
T d1v3wa_          88 GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLT  145 (173)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             eeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCC
Confidence            489999999999999999999999999999999996  59999999999999998764

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.65  E-value=5.3e-16  Score=136.38  Aligned_cols=95  Identities=26%  Similarity=0.387  Sum_probs=87.1

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ..+|.-+|+||++++|++  +.+||+.|.||+||.|+.|+.|||.....+.++++|+|+|+||++|.|.+|+.||++++|
T Consensus       125 ps~VNigA~ig~~~midt--~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi  202 (274)
T d3tdta_         125 PSYVNIGAYVDEGTMVDT--WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVI  202 (274)
T ss_dssp             SEEECTTCEECTTCEECT--TEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             eeEeccccEEcCCcEEcc--cceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEe
Confidence            345666778889999988  999999999999999999999999888778889999999999999999999999999999


Q ss_pred             CCCCEEcCC---------------CCCCcEEE
Q 039045          241 GAGSVVLID---------------VPARATAV  257 (295)
Q Consensus       241 gagsvV~~~---------------Vp~~~~v~  257 (295)
                      |+|++|+++               ||++++++
T Consensus       203 ~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv  234 (274)
T d3tdta_         203 SMGVYLGQSTRIYDRETGEIHYGRVPAGSVVV  234 (274)
T ss_dssp             CTTCEECTTCCEEETTTCCEESSEECTTEEEE
T ss_pred             ccceEEeccccceeccCCcEeccccCCCCEEe
Confidence            999999995               99998886

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.6e-16  Score=133.25  Aligned_cols=54  Identities=31%  Similarity=0.564  Sum_probs=49.5

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc-cCcEEecC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG-NPARLVGG  266 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G-~PA~~i~~  266 (295)
                      ++.||++|+||.++.|+++++||++|+||++|+|.+|||++++++| .|++.++.
T Consensus       143 ~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~vg~~~~~~~~~  197 (201)
T d2oi6a1         143 KTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEG  197 (201)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTT
T ss_pred             ccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEEecccceEccC
Confidence            5799999999999999999999999999999999999999999665 88877753

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.62  E-value=3.5e-15  Score=126.65  Aligned_cols=119  Identities=27%  Similarity=0.358  Sum_probs=97.8

Q ss_pred             eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045          161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV  240 (295)
Q Consensus       161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I  240 (295)
                      ...|||++.|++++.|..+.++.|+++++|+++|.|++++.|+......  ++++||++|.|++++++.++++||++|+|
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~--~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~I  151 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIE--HECVIGEFSHVSVGAKCAGNVKIGKNCFL  151 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccc--eeeeccccccccccccccccceeeccccC
Confidence            3458999888888888776677777777777777777777776544333  47899999999999999999999999999


Q ss_pred             CCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045          241 GAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESM  281 (295)
Q Consensus       241 gagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~  281 (295)
                      |++|+|.+++. ....++|.-+.+.+..++...+.+.|++.|
T Consensus       152 G~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~G~PAk~i  193 (193)
T d3bswa1         152 GINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM  193 (193)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCCCC
T ss_pred             CceeeEcCCeEECCCCEECCCCEECcCCCCCcEEEEeCCEEC
Confidence            99999999974 455678889999999888888899999864

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.4e-15  Score=128.46  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=82.2

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------------  229 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------------  229 (295)
                      ||+++.|+++++++.|.++.||+++.|+.+|+|.++.            .++||++|.||++++|.              
T Consensus        57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~------------~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~  124 (200)
T d1krra_          57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY------------TVTIGDNVLIAPNVTLSVTGHPVHHELRKNG  124 (200)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSS------------CEEECSSCEECSSCEEESEECCSSTTTCTTC
T ss_pred             CCCCCEEcCCEEEecCCccEECCccEECceEEEecCC------------CcEeCCCccccceeEEecccccceecccccc
Confidence            7788888888877766667776666666666665432            34677777777777663              


Q ss_pred             ----CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          230 ----GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       230 ----~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                          .+++||++|+||++++|.+++. ....++|.-+.+.+..+....+.+.|++.++..
T Consensus       125 ~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv~G~PArvik~~  184 (200)
T d1krra_         125 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREI  184 (200)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             eeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcEEEEeCCEEEEeC
Confidence                5689999999999999999864 555677889999888887777889999877654

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=8.3e-16  Score=129.53  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=92.9

Q ss_pred             ccccceeeEeCCCceecCceEEcCCcCeEECC--CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCC
Q 039045          155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGE--TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNV  232 (295)
Q Consensus       155 ~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~--~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v  232 (295)
                      .+..+|.+++|.++.||++++|++  +++|.+  .+.||++|.|+++|+|+.        +..+++.+....++.+.+++
T Consensus        60 ~i~~p~~~~~G~ni~IG~~~~I~~--~~~I~d~~~I~IG~~~~Ig~~v~I~~--------~~~~~~~~~~~~~~~~~~~v  129 (182)
T d1ocxa_          60 YIEPTFRCDYGYNIFLGNNFFANF--DCVMLDVCPIRIGDNCMLAPGVHIYT--------ATHPIDPVARNSGAELGKPV  129 (182)
T ss_dssp             EECSCEEESSSTTEEECSSEEECS--SEEEECSSCEEECTTCEECTTCEEEC--------EECCSSHHHHTTTCBEECCE
T ss_pred             EEECCEEEEeccceeECCccEECC--CcEEecCCeEEECCCeEECcCceEee--------cccccceeeeeccceEccee
Confidence            355667888999999999999988  788854  458899999999999874        34556666667777777788


Q ss_pred             EECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045          233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH  283 (295)
Q Consensus       233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~  283 (295)
                      +||++|+||++++|.++|. ....++|..+.+.+..+....+.++|++.++.
T Consensus       130 ~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~~~i~~G~PAk~ir~  181 (182)
T d1ocxa_         130 TIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             EECceEeeCceeeccCcEEECCCCEECCCCEEccCCCCCeEEEeeCCEEEee
Confidence            8888888888888888864 45566788888888887777778999987654

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.44  E-value=5e-14  Score=120.87  Aligned_cols=107  Identities=15%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             eEeCCCceecCceEEc--CCcCeEECCCcEEcCCcEEccCCEECCCCCCC---------CCCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFD--HATGVVIGETAVIGNNVSILHHVTLGGTGKAS---------GDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~--~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~---------~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      +.||+++.||++++|.  .+..++||++|.|+++|+|..+..++..+...         ....+.||++|+||.+++|.+
T Consensus        41 V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g  120 (210)
T d1qrea_          41 VTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHG  120 (210)
T ss_dssp             EEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEE
T ss_pred             eEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecccccccccccccc
Confidence            4455555555555552  12355566665555555553222221111000         001244555555555555554


Q ss_pred             CCEECCCCEECCCCEEc------------------------CCCCCCcEEEcc-CcEEecCCC
Q 039045          231 NVKIGEGAKVGAGSVVL------------------------IDVPARATAVGN-PARLVGGKE  268 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~------------------------~~Vp~~~~v~G~-PA~~i~~~~  268 (295)
                      +++||++|+||++++|.                        +.||+++++.|+ |++.+++..
T Consensus       121 ~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g~~~~~~i~~~~  183 (210)
T d1qrea_         121 PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVT  183 (210)
T ss_dssp             EEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCCBCC
T ss_pred             CCcccCCcEeeCCccccccccccCcEEecCcEecCcEeCCCcEECCCcEEeCCCcccccccCC
Confidence            55555555555554443                        235666777764 666666554

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.41  E-value=3.6e-13  Score=119.20  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      +++||++|++++++.+.+.++||++|+||+++.|.+.+. ....++|.-+.+.+..+....+.+.|++.+..+
T Consensus       126 ~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~~~G~PA~~~~~n  198 (262)
T d2jf2a1         126 DCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVN  198 (262)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEEEEC
T ss_pred             ccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceEeecCCcccccCCCCceeeeee
Confidence            455555555566666677888999999999999988864 445566677888888877777789999877655

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.39  E-value=7.2e-13  Score=116.87  Aligned_cols=69  Identities=17%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      +.||+++.++.++.+.++++||++|+||.+++|.+.+. ....++|.-+.+.+..+....+.+.|++...
T Consensus       122 ~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kdVp~~~i~~G~PA~~~g  191 (259)
T d1j2za_         122 CVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRG  191 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEEE
T ss_pred             ecccceeeeeccccccccccccccceecceeeeecccEeccceeeeeeeeeccccccceeEEeccccccc
Confidence            34455555555566677899999999999999999964 4445566788888888777777899998653

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.9e-13  Score=97.55  Aligned_cols=74  Identities=19%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             ccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045          157 SDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       157 ~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ..+..++|..++.||+++.|++  +++|+++++||+||.|++++.|.         +++||+++.|++++.| .+++||+
T Consensus         4 ~dP~~~~I~g~v~IG~~~~I~~--~~~i~g~~~IG~~v~Ig~~~~i~---------~~~Ig~~~~I~~~s~i-~~~~Ig~   71 (78)
T d1fxja1           4 RDPARFDLRGTLTHGRDVEIDT--NVIIEGNVTLGHRVKIGTGCVIK---------NSVIGDDCEISPYTVV-EDANLAA   71 (78)
T ss_dssp             SCGGGEEEEEEEEECSSCEECT--TEEEEEEEEECTTCEECTTCEEE---------SCEECTTCEECTTCEE-ESEEECT
T ss_pred             ECCCeEEEeccEEECCCCEECC--ccEEeCCcEECCCCEECCCeEEe---------cCEECCCCEEcCCcEE-ECCEECC
Confidence            3455667888888888888888  88888888999999999999995         6899999999999988 5799999


Q ss_pred             CCEECC
Q 039045          237 GAKVGA  242 (295)
Q Consensus       237 ~~~Iga  242 (295)
                      +|.||+
T Consensus        72 ~~~IGP   77 (78)
T d1fxja1          72 ACTIGP   77 (78)
T ss_dssp             TCEESC
T ss_pred             CCEECc
Confidence            999986

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.11  E-value=1.6e-11  Score=104.38  Aligned_cols=55  Identities=16%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          230 GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                      ++++||++|+||++|+|.+++. ....++|.-+.+.+..+....+.++|++.++..
T Consensus       112 g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r  167 (203)
T d1mr7a_         112 GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (203)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             cCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEecc
Confidence            5789999999999999999864 555667888888888777777889999988764

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.10  E-value=3e-10  Score=99.37  Aligned_cols=109  Identities=19%  Similarity=0.255  Sum_probs=77.7

Q ss_pred             ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------
Q 039045          159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------  230 (295)
Q Consensus       159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------  230 (295)
                      ..+..+-.+++|++|+.+.   +.++.-++.||++|+|.++++||.        .+.||++|.|++|+.|++        
T Consensus       106 vPga~VR~GayI~~~vVlm---ps~VNigA~ig~~~midt~a~vgs--------~aqIG~~vhis~g~~igGvlep~~~~  174 (274)
T d3tdta_         106 VPPATVRQGAFIARNTVLM---PSYVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQAN  174 (274)
T ss_dssp             CTTCEEBTTCEECTTCEEC---SEEECTTCEECTTCEECTTEEECT--------TCEECTTCEECTTCEECCSBTTBCSS
T ss_pred             CCCceeccCcEECCCcEEe---eeEeccccEEcCCcEEcccceecc--------eeEECCCeEECCCcEEEeccccCCCC
Confidence            3455566667777777665   357777889999999999999984        679999999999999987        


Q ss_pred             CCEECCCCEECCCCEEcCCCC--CCcE-----EEccCcEEecCCCCCCCCCCCCC
Q 039045          231 NVKIGEGAKVGAGSVVLIDVP--ARAT-----AVGNPARLVGGKEKTSSNEECPG  278 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp--~~~~-----v~G~PA~~i~~~~~~~~~~~~p~  278 (295)
                      +++|+|+|.||++|.|.++|.  .+++     +++.+-+++.....+..+...|+
T Consensus       175 p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~  229 (274)
T d3tdta_         175 PTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPA  229 (274)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECT
T ss_pred             CcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCC
Confidence            456999999999999998853  4433     33444455444433333333443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.4e-11  Score=86.41  Aligned_cols=62  Identities=27%  Similarity=0.384  Sum_probs=42.7

Q ss_pred             CCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045          178 HATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI  248 (295)
Q Consensus       178 ~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~  248 (295)
                      ....+.|..++.||++|.|+++++|.+        +++||+||+||+||.| .+++||++|.|+++|++..
T Consensus         5 dP~~~~I~g~v~IG~~~~I~~~~~i~g--------~~~IG~~v~Ig~~~~i-~~~~Ig~~~~I~~~s~i~~   66 (78)
T d1fxja1           5 DPARFDLRGTLTHGRDVEIDTNVIIEG--------NVTLGHRVKIGTGCVI-KNSVIGDDCEISPYTVVED   66 (78)
T ss_dssp             CGGGEEEEEEEEECSSCEECTTEEEEE--------EEEECTTCEECTTCEE-ESCEECTTCEECTTCEEES
T ss_pred             CCCeEEEeccEEECCCCEECCccEEeC--------CcEECCCCEECCCeEE-ecCEECCCCEEcCCcEEEC
Confidence            334455656666666666666666664        4677778888888777 4777888888888777753

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.09  E-value=1.3e-10  Score=95.79  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEcc---------CCEECCCCCC--CCCCCCEECCCCEECCCCEECC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILH---------HVTLGGTGKA--SGDRHPKIGDGVLIGAGATILG  230 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~---------gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~  230 (295)
                      ..||++++|++++.|..  +++||++|.|+.+|+|+.         ++.++.....  ....+++||+++.++.++.+ +
T Consensus        13 ~~Ig~~~~I~~~a~I~~--~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~-~   89 (172)
T d1xhda_          13 PKIASSAFIADYVTITG--DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL-H   89 (172)
T ss_dssp             CEECTTCEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE-E
T ss_pred             CEECCCcEECCCCEEeC--CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc-c
Confidence            45777777777776665  677777777666666542         2333222111  11234788999998888887 6


Q ss_pred             CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEec--CCCCCCCCCCCCCccccc
Q 039045          231 NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG--GKEKTSSNEECPGESMDH  283 (295)
Q Consensus       231 ~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~--~~~~~~~~~~~p~~~~~~  283 (295)
                      +++|+++++||++++|.+++- ....++|.-+.+..  +.+....+.+.|++.++.
T Consensus        90 ~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~  145 (172)
T d1xhda_          90 SCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRE  145 (172)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             ccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcEEECC
Confidence            778888999988888888753 44455566666653  234555557889987654

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.06  E-value=5.6e-10  Score=92.58  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045          230 GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMD  282 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~  282 (295)
                      +++.||++|+||.++.|.+++. ....++|.-+.+.+..+....+.+.|++..+
T Consensus       141 ~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~G~Pak~~k  194 (196)
T d1g97a1         141 YKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINK  194 (196)
T ss_dssp             CCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCCCCCCCC
T ss_pred             eeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEEecCCEEec
Confidence            4567899999999999999964 4445677788888888888877899998765

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=1e-10  Score=96.32  Aligned_cols=113  Identities=18%  Similarity=0.211  Sum_probs=85.5

Q ss_pred             eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045          164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------  228 (295)
Q Consensus       164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------  228 (295)
                      .|.+.+|+++++|++  +++|+.+++||++|.|+++++|++...     .++||+++.++..+.+               
T Consensus         7 ~g~~~~I~~~~~I~~--~a~I~g~v~IG~~~~Ig~~~~I~~~~~-----~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1v3wa_           7 NGKKPRIHPSAFVDE--NAVVIGDVVLEEKTSVWPSAVLRGDIE-----QIYVGKYSNVQDNVSIHTSHGYPTEIGEYVT   79 (173)
T ss_dssp             TTBCCEECTTCEECT--TSEEEEEEEECTTCEECTTCEEEEEEE-----EEEECTTCEECTTCEEECBTTBCEEECSSCE
T ss_pred             CCCCCEECcCcEECC--CCEEeCceEECCCCEECCCcccccccc-----ccccccccccccccccccccCCCcccCccee
Confidence            578899999999998  889999999999999999999975321     2455555555555443               


Q ss_pred             ------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecC--CCCCCCCCCCCCccccc
Q 039045          229 ------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGG--KEKTSSNEECPGESMDH  283 (295)
Q Consensus       229 ------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~  283 (295)
                            .+++.||++|+||++++|.+++- ....++|.-+.+.+.  .++...+.++|++.++.
T Consensus        80 ~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~  143 (173)
T d1v3wa_          80 IGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQ  143 (173)
T ss_dssp             ECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             eeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecC
Confidence                  24689999999999999998853 666777888888753  34555667899986543

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.83  E-value=4.7e-09  Score=89.17  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=73.7

Q ss_pred             EeCCCceecCceEEcCC--------------cCeEECCCcEEcCCcEEccCCEECCCCCCCC-CCCCEECCCCE------
Q 039045          163 DIHPAAKIGKGILFDHA--------------TGVVIGETAVIGNNVSILHHVTLGGTGKASG-DRHPKIGDGVL------  221 (295)
Q Consensus       163 ~Ig~~a~IG~~v~I~~~--------------~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~-~~~~~IG~~v~------  221 (295)
                      .++|++.||+++++...              ....+.+.+.||++|.|+++++|...+.... ...+.+...+.      
T Consensus        16 I~~pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (208)
T d1xata_          16 VSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPA   95 (208)
T ss_dssp             CCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGG
T ss_pred             cCCCCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeeccccccccccc
Confidence            36778888877776531              1223344567777777777777633221110 01111111111      


Q ss_pred             ---ECCCCEECCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045          222 ---IGAGATILGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT  284 (295)
Q Consensus       222 ---IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~  284 (295)
                         ...+..+.++++||++|+||++|+|.+++. ....++|.-+.+.+..+....+.+.|++.++..
T Consensus        96 ~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk~ik~R  162 (208)
T d1xata_          96 FAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  162 (208)
T ss_dssp             GGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             ccccccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEEEecCCEEEecc
Confidence               112333456677888888888888877753 445667778888888888888889999988765

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.81  E-value=3e-09  Score=84.08  Aligned_cols=81  Identities=22%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC----------CCCCCEECCCCEECCCCEECCC
Q 039045          162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS----------GDRHPKIGDGVLIGAGATILGN  231 (295)
Q Consensus       162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~----------~~~~~~IG~~v~IGa~a~I~~~  231 (295)
                      ..|++++.|+ +..+.   +.+||++|.||+++.|.+++.+++.....          ...+++||++|+|+ +++|..+
T Consensus        15 s~Ig~g~~I~-~~~i~---~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~-~~iIg~~   89 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKIH---HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK-RAIIDKN   89 (135)
T ss_dssp             EEECTTCEEE-EEEEE---SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE-SEEECTT
T ss_pred             CEECCCCEEe-CCEEe---ccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEec-cceecCC
Confidence            3455555554 23332   46788888888888887766665432211          11234555555553 4555555


Q ss_pred             CEECCCCEECCCCEEc
Q 039045          232 VKIGEGAKVGAGSVVL  247 (295)
Q Consensus       232 v~IG~~~~IgagsvV~  247 (295)
                      ++||++|+++.++.+.
T Consensus        90 ~~IG~g~~i~~~~~~~  105 (135)
T d1yp2a1          90 ARIGDNVKIINKDNVQ  105 (135)
T ss_dssp             CEECTTCEECCSSCCS
T ss_pred             CEECCCcEECCCcccc
Confidence            5555555555544443

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=98.74  E-value=1.3e-08  Score=86.28  Aligned_cols=75  Identities=23%  Similarity=0.182  Sum_probs=41.8

Q ss_pred             EeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC-------------
Q 039045          163 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL-------------  229 (295)
Q Consensus       163 ~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~-------------  229 (295)
                      .||++++|.+++.|..  .++||++|+||++|+|..+          ....++||++|.|+.+++|.             
T Consensus        24 ~I~~~a~I~p~A~i~g--~V~IG~~~~Igp~~vIrgd----------~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~   91 (210)
T d1qrea_          24 VIDPTAYIDPQASVIG--EVTIGANVMVSPMASIRSD----------EGMPIFVGDRSNVQDGVVLHALETINEEGEPIE   91 (210)
T ss_dssp             EECTTCEECTTCEEEE--SEEECTTCEECTTCEEEES----------SSCCEEECTTCEECTTCEEEECCSBCTTSCBCG
T ss_pred             ccCCCCEECCCCEEec--ceEECCCCEEccCeeeecc----------cCCceEEcccceeeeeeEeccceeecccccccc
Confidence            4777777777766654  4666666666666555210          00134555555555555551             


Q ss_pred             ----------CCCEECCCCEECCCCEEcCC
Q 039045          230 ----------GNVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       230 ----------~~v~IG~~~~IgagsvV~~~  249 (295)
                                .+++||++|+||.++.|..+
T Consensus        92 ~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~  121 (210)
T d1qrea_          92 DNIVEVDGKEYAVYIGNNVSLAHQSQVHGP  121 (210)
T ss_dssp             GGCEEETTEEESEEECTTCEECTTCEEEEE
T ss_pred             CccccccccccceeeccccccccccccccC
Confidence                      24566666666666666543

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.73  E-value=2e-08  Score=79.14  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCC----------CEECCCCEECCCCEECCCCEECC
Q 039045          167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRH----------PKIGDGVLIGAGATILGNVKIGE  236 (295)
Q Consensus       167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~----------~~IG~~v~IGa~a~I~~~v~IG~  236 (295)
                      ++.||+||+|..   .+| .+++||++|.|++++.|...........          +.+++++.||.+|.| +++.||+
T Consensus        14 ~s~Ig~g~~I~~---~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I-~~~iIg~   88 (135)
T d1yp2a1          14 DSVIGEGCVIKN---CKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHI-KRAIIDK   88 (135)
T ss_dssp             EEEECTTCEEEE---EEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEE-ESEEECT
T ss_pred             eCEECCCCEEeC---CEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEe-ccceecC
Confidence            477888888853   334 4688888888888888875433322110          234566888888888 4888888


Q ss_pred             CCEECCCCEEcCCC
Q 039045          237 GAKVGAGSVVLIDV  250 (295)
Q Consensus       237 ~~~IgagsvV~~~V  250 (295)
                      +|.||+|+++..+.
T Consensus        89 ~~~IG~g~~i~~~~  102 (135)
T d1yp2a1          89 NARIGDNVKIINKD  102 (135)
T ss_dssp             TCEECTTCEECCSS
T ss_pred             CCEECCCcEECCCc
Confidence            88888888887764

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.35  E-value=2.1e-07  Score=83.38  Aligned_cols=48  Identities=21%  Similarity=0.047  Sum_probs=33.1

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccC
Q 039045          213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP  260 (295)
Q Consensus       213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~P  260 (295)
                      +++|++++.|+.++.|.++++|++++.|++.+....++++..++.|+.
T Consensus       266 ~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~~~l~g~~~i~G~~  313 (320)
T d2f9ca1         266 RVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGED  313 (320)
T ss_dssp             EEEECSSCEEESSEEECSEEEECSSCEEECCSSCCEEECSSEEECSSC
T ss_pred             ceEECCCcEEcccCEEeCCCEECCCeEEEEecCCeEEccCCcEEcCcc
Confidence            466777777777777777777777777777776666677666666654

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=97.98  E-value=5.2e-06  Score=74.01  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=20.1

Q ss_pred             CCEECCCCEECCCC-EECCCCEECCCCEECCCCEEcCC
Q 039045          213 HPKIGDGVLIGAGA-TILGNVKIGEGAKVGAGSVVLID  249 (295)
Q Consensus       213 ~~~IG~~v~IGa~a-~I~~~v~IG~~~~IgagsvV~~~  249 (295)
                      ++.||+++.|+.++ .|.++++|++++.|+.++.|..+
T Consensus       247 ~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~  284 (320)
T d2f9ca1         247 HVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQ  284 (320)
T ss_dssp             EEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSE
T ss_pred             ceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCC
Confidence            45555555554443 34444556666666666666555

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=4.2e-06  Score=69.00  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             cceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC--------CCCCEECCCCEECCCCEEC
Q 039045          158 DVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG--------DRHPKIGDGVLIGAGATIL  229 (295)
Q Consensus       158 ~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~--------~~~~~IG~~v~IGa~a~I~  229 (295)
                      ++..++|+++++||+++.|++  +++|++++.||++|.|+++++|+.......        .....+++++.++.++.+.
T Consensus         5 dp~~~~i~~~v~IG~~v~Ig~--~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~   82 (201)
T d2oi6a1           5 DPARFDLRGTLTHGRDVEIDT--NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLR   82 (201)
T ss_dssp             CGGGEEEEEEEEECSSCEECT--TEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEEC
T ss_pred             CCCeEEECceEEECCCCEECC--CCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccc
Confidence            344556777777777777766  666666666666666666666653221110        1234555555555555555


Q ss_pred             CCCEECCCCEECCCCEEc
Q 039045          230 GNVKIGEGAKVGAGSVVL  247 (295)
Q Consensus       230 ~~v~IG~~~~IgagsvV~  247 (295)
                      .++.+++.+.++....+.
T Consensus        83 ~~~~~~~~~~i~~~~~~~  100 (201)
T d2oi6a1          83 PGAELLEGAHVGNFVEMK  100 (201)
T ss_dssp             TTCEECTTCEEEEEEEEE
T ss_pred             cceeeeeeeeecceeeee
Confidence            555666655555544443