Citrus Sinensis ID: 039048

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ
cCECccccccHHHHHHHHHHHHHHccccccccccCECccccEECcccccccccEEEEEccccccccccccccccccEEEEEEEEcccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEECcccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccEEEEEECccccccccccccCEEEEEEECcccccccEEEEEEEccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccCEEcccccccccccEEEECccccc
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPD****************FRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD*********SGNILPGTVVDTHICHPTEFDFYLNSHAGI*
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VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein argonaute 5 Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.probableQ9SJK3
Protein argonaute 1C Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.probableQ6K972

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4F3T, chain A
Confidence level:very confident
Coverage over the Query: 1-61,77-352,366-482
View the alignment between query and template
View the model in PyMOL