Citrus Sinensis ID: 039048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ
cEEEcccccHHHHHHHHHHHHHHHccccccccccEEEccccEEEcccccccccEEEEEccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccccEEEEEEEccccEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEccccc
ccccccccccHHHHHHHHHHHHHHcHHHcccccccccccccEEcccccccccEEEEEEEcccccccccccccccccEEEEEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEcccccccccccccccccccEEEEccccccccHHHcccEEEEEEEEEEEccccccHHHHHHHHcHccccccHHHHHHHHHHccccEEEEEccccccEEEEEEcccccccEEEEEEEcccEEEEEEEEEcccccccccHHHHHHEEEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHHEEEEccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEEcccccccccccccccccccccEEcccccccccccEEEEcccccc
vsitpevtskKINRQIISQLINLYRltnlggripaydgmksiytagplpfeskefiiklpdsdprpssstrprkerQFRVVIRLASKPDLYTLQQFLRrrhfevpyEVIQVLDVVLraapsekhtvvgrsffstdlgpmgqlgdgvEYWRGYFqslrptqmglslnidvsarsfyepilATEFVQYYCRdlsrplsdQVRLKVKKALKGIKVVLTHMEYNksykitgissqpmSQLIIKRVCETElgivsqccqprqasrLNMQYFENVALKINVKVGGRNTVLVDAVqkriplvtdrptiifgadvthpqpgedsspsIAAVVASmdwpevtkyRGLVSAQAHHEEIIQDLYkstqdpqrglvhGGMIRELLIAFRRstnfkphriifyrdgvsegqFSQVLLHEMNAIRQACAsleegyappvTFVVVQKrhhtrlfpadhnrrdltdrsgnilpgtvvdthichptefdfylnshagiq
vsitpevtskkinRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLpdsdprpssstrprkerqfrvvirlaskpdlyTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKhtvvgrsffstdlgpmgQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSrplsdqvrLKVKKALKGIKVVLTHMEYNKsykitgissqpmSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVdavqkriplvtdrptIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTrlfpadhnrrdltdrsgnILPGTVVDTHICHPTEFDFYLNSHAGIQ
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLpdsdprpssstrprKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ
***********INRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIK*******************FRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT***********IAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLN******
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPD****************FRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA*************ILPGTVVDTHICHPTEFDFYLNSHAGI*
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPD**************RQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDS**********RKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD*********SGNILPGTVVDTHICHPTEFDFYLNSHA***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLIIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
Q9SJK3997 Protein argonaute 5 OS=Ar yes no 0.485 0.234 0.816 1e-120
O04379 1048 Protein argonaute 1 OS=Ar no no 0.483 0.222 0.779 1e-113
Q6K972 1011 Protein argonaute 1C OS=O yes no 0.495 0.236 0.779 1e-111
Q7XSA2 1118 Protein argonaute 1B OS=O no no 0.5 0.215 0.763 1e-110
Q851R2 1058 Protein argonaute MEL1 OS no no 0.506 0.230 0.784 1e-110
Q6EU14 1082 Protein argonaute 1A OS=O no no 0.5 0.222 0.759 1e-109
Q7Y0011049 Protein argonaute 12 OS=O no no 0.504 0.231 0.730 1e-108
Q5Z5B2 1038 Protein argonaute 1D OS=O no no 0.495 0.230 0.746 1e-108
Q9XGW1 988 Protein argonaute 10 OS=A no no 0.497 0.242 0.742 1e-108
Q69VD5979 Protein argonaute PNH1 OS no no 0.495 0.244 0.742 1e-107
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 215/245 (87%)

Query: 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 297
           IKR+CETELGIVSQCCQPRQ ++LN QY ENVALKINVK GGRNTVL DA+++ IPL+TD
Sbjct: 653 IKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITD 712

Query: 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQ 357
           RPTII GADVTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK  Q
Sbjct: 713 RPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQ 772

Query: 358 DPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417
           DPQRGLVH G+IRE  IAFRR+T   P RIIFYRDGVSEGQFSQVLLHEM AIR+AC SL
Sbjct: 773 DPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSL 832

Query: 418 EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNS 477
           +E Y P VTFV+VQKRHHTRLFP  H  RD+TD+SGNI PGTVVDT ICHP EFDFYLNS
Sbjct: 833 QENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNS 892

Query: 478 HAGIQ 482
           HAGIQ
Sbjct: 893 HAGIQ 897
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 0.5 0.232 0.877 1e-127
297734872 1032 unnamed protein product [Vitis vinifera] 0.495 0.231 0.877 1e-127
224054242 904 argonaute protein group [Populus trichoc 0.493 0.263 0.877 1e-127
224106886 987 argonaute protein group [Populus trichoc 0.504 0.246 0.853 1e-122
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.495 0.242 0.838 1e-120
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.495 0.242 0.838 1e-120
255565533 987 eukaryotic translation initiation factor 0.504 0.246 0.857 1e-119
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.485 0.233 0.828 1e-119
4510428 997 Argonaute (AGO1)-like protein [Arabidops 0.485 0.234 0.816 1e-118
30683679 997 Argonaute family protein [Arabidopsis th 0.485 0.234 0.816 1e-118
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/245 (87%), Positives = 229/245 (93%)

Query: 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 297
           IKR+CETELGIVSQCCQP QAS+LN QYFENVALKINVKVGGRNTVL DA+Q++IPLV+D
Sbjct: 694 IKRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSD 753

Query: 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQ 357
            PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ H EEIIQDLYK+T 
Sbjct: 754 LPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTA 813

Query: 358 DPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417
           DP +G+ HGGMIRELLIAFRRST +KP RIIFYRDGVSEGQFSQVLLHEM++IR+ACASL
Sbjct: 814 DPHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASL 873

Query: 418 EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNS 477
           EEGY PPVTFVVVQKRHHTR FP+DH  RDLTDRSGNILPGTVVDT ICHPTEFDFYLNS
Sbjct: 874 EEGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNS 933

Query: 478 HAGIQ 482
           HAGIQ
Sbjct: 934 HAGIQ 938

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.508 0.245 0.816 4.5e-176
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.506 0.230 0.784 3.4e-167
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.582 0.287 0.669 3.3e-158
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.508 0.247 0.742 2.4e-153
FB|FBgn0262739 984 AGO1 "Argonaute-1" [Drosophila 0.468 0.229 0.520 5.7e-94
RGD|1304583 798 Ago4 "argonaute RISC catalytic 0.489 0.295 0.526 1e-90
UNIPROTKB|Q9HCK5 861 EIF2C4 "Protein argonaute-4" [ 0.489 0.274 0.526 2.4e-90
UNIPROTKB|F1SV64 861 EIF2C4 "Uncharacterized protei 0.489 0.274 0.526 2.4e-90
UNIPROTKB|F1P3Z1 847 EIF2C4 "Protein argonaute-4" [ 0.489 0.278 0.522 4.1e-90
UNIPROTKB|F1LUQ5 860 Eif2c4 "Protein Eif2c4" [Rattu 0.489 0.274 0.526 5.7e-90
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1068 (381.0 bits), Expect = 4.5e-176, Sum P(2) = 4.5e-176
 Identities = 200/245 (81%), Positives = 215/245 (87%)

Query:   238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 297
             IKR+CETELGIVSQCCQPRQ ++LN QY ENVALKINVK GGRNTVL DA+++ IPL+TD
Sbjct:   653 IKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITD 712

Query:   298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQ 357
             RPTII GADVTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK  Q
Sbjct:   713 RPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQ 772

Query:   358 DPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417
             DPQRGLVH G+IRE  IAFRR+T   P RIIFYRDGVSEGQFSQVLLHEM AIR+AC SL
Sbjct:   773 DPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSL 832

Query:   418 EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNS 477
             +E Y P VTFV+VQKRHHTRLFP  H  RD+TD+SGNI PGTVVDT ICHP EFDFYLNS
Sbjct:   833 QENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNS 892

Query:   478 HAGIQ 482
             HAGIQ
Sbjct:   893 HAGIQ 897
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0262739 AGO1 "Argonaute-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1304583 Ago4 "argonaute RISC catalytic component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6K972AGO1C_ORYSJNo assigned EC number0.77950.49580.2363yesno
Q9SJK3AGO5_ARATHNo assigned EC number0.81630.48540.2347yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022116001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-124
pfam02171296 pfam02171, Piwi, Piwi domain 3e-78
smart00950301 smart00950, Piwi, This domain is found in the prot 4e-72
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 9e-72
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 2e-42
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 5e-40
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 3e-31
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 5e-22
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-08
pfam02170114 pfam02170, PAZ, PAZ domain 0.002
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  368 bits (948), Expect = e-124
 Identities = 134/247 (54%), Positives = 166/247 (67%), Gaps = 21/247 (8%)

Query: 238 IKRVCETELGIVSQCCQPRQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVT 296
           IKR+ +TELGI +QC   ++ ++  N QYF NVALKIN+K+GG N  L        PL+T
Sbjct: 139 IKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEP---DIRPLLT 195

Query: 297 DRPTIIFGADVTHPQPGE-DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKS 355
             PT++ GADVTHP PG+   +PSIAAVVAS+DW    +Y   V  Q+H +EII DL   
Sbjct: 196 KEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHL-AQYPASVRLQSHRQEIIDDL--- 251

Query: 356 TQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACA 415
                       M+RELL AF+++T   P RII+YRDGVSEGQF+QVL  E+ AIR+ACA
Sbjct: 252 ----------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACA 301

Query: 416 SLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYL 475
            L  GY P +TF+VVQKRHHTR FP D +  D   ++GN+ PGTVVD  I HP EFDFYL
Sbjct: 302 KLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYL 359

Query: 476 NSHAGIQ 482
            SHAGIQ
Sbjct: 360 CSHAGIQ 366

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
PLN03202900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.83
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 97.15
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 96.77
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 96.01
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 95.25
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 91.09
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 89.61
TIGR00194574 uvrC excinuclease ABC, C subunit. This family cons 82.94
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.4e-97  Score=830.74  Aligned_cols=462  Identities=42%  Similarity=0.666  Sum_probs=390.6

Q ss_pred             CeecCC----CCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCCcceEEEEcCCCCC------------
Q 039048            1 VSITPE----VTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDP------------   64 (482)
Q Consensus         1 V~I~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~~~~~~V~~~~~~~------------   64 (482)
                      |+|+|+    ..+++++|+|++++++++.. .+.+..+||||+++|||+.+||+++.++.|+++++++            
T Consensus        69 V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~  147 (900)
T PLN03202         69 VSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGN  147 (900)
T ss_pred             EEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCccceEECccCCCCCceEEEEeccccccccccccccccc
Confidence            578863    34577889999999987653 4655679999999999999999877788898875311            


Q ss_pred             CCCCCC------CCCCCceEEEEEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCCCC-ccccccccccCCCC
Q 039048           65 RPSSST------RPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEK-HTVVGRSFFSTDLG  137 (482)
Q Consensus        65 ~~~~~~------~~~~~~~f~V~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps~~-~~~vgrsFF~~~~~  137 (482)
                      +++.++      ...+.+.|+|+|++++++++++|.+||.|.....+.++|||||||||+.|+.. ++.+||+||.++..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~  227 (900)
T PLN03202        148 GSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPK  227 (900)
T ss_pred             CCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCc
Confidence            111000      01246889999999999999999999999977788999999999999999865 88999999986644


Q ss_pred             CcccCCCceeeeeeeeeeeeecccceeeeeecceeeeeccccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEee
Q 039048          138 PMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHM  217 (482)
Q Consensus       138 ~~~~lg~Gle~wrG~fqSvRp~~~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~  217 (482)
                      ...+||+|+|+|+|||+||||++++|+|||||+|++||++++|+++|.++.+.  ......++.+++++|+|++|.++|.
T Consensus       228 ~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lkGl~V~t~~~  305 (900)
T PLN03202        228 NFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNV--RDPFQIDWSKAKRMLKNLRVKVSPS  305 (900)
T ss_pred             ccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCc--CCccchhHHHHHHHhcCCEEEEecC
Confidence            55689999999999999999999999999999999999999999999987532  1111235678999999999999996


Q ss_pred             cCceeeEEecccCCccc-------------------chh-----------------------------------------
Q 039048          218 EYNKSYKITGISSQPMS-------------------QLI-----------------------------------------  237 (482)
Q Consensus       218 ~~~r~ykI~gl~~~~~~-------------------~~~-----------------------------------------  237 (482)
                      +  +.|+|.+|+..++.                   +++                                         
T Consensus       306 ~--k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~  383 (900)
T PLN03202        306 N--QEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLV  383 (900)
T ss_pred             C--ceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEcc
Confidence            3  67899888642221                   000                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 039048          238 --------------------------------------------------------------------------------  237 (482)
Q Consensus       238 --------------------------------------------------------------------------------  237 (482)
                                                                                                      
T Consensus       384 ~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~  463 (900)
T PLN03202        384 SLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFF  463 (900)
T ss_pred             CCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 039048          238 --------------------------------------------------------------------------------  237 (482)
Q Consensus       238 --------------------------------------------------------------------------------  237 (482)
                                                                                                      
T Consensus       464 p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l  543 (900)
T PLN03202        464 PRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQI  543 (900)
T ss_pred             CCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccC
Q 039048          238 --------------------------IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKR  291 (482)
Q Consensus       238 --------------------------iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~  291 (482)
                                                ||++||+++||+||||...   +.++||++||+||||+||||+||.+..+....
T Consensus       544 ~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~  620 (900)
T PLN03202        544 QSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPS  620 (900)
T ss_pred             HHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeeccccccc
Confidence                                      9999999999999999664   35789999999999999999999886543345


Q ss_pred             CCCcCCCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHH
Q 039048          292 IPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRE  371 (482)
Q Consensus       292 ~p~~~~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~  371 (482)
                      +|++.+.+|||||+||+||+||....|||||||||+|++.+++|++.+++|.+++|+|++|.....+    ..+++|+++
T Consensus       621 i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~  696 (900)
T PLN03202        621 IPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRE  696 (900)
T ss_pred             CccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHH
Confidence            7887778999999999999998655799999999999778999999999999999999987321111    124889999


Q ss_pred             HHHHHHHHc-CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCC
Q 039048          372 LLIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTD  450 (482)
Q Consensus       372 ~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~  450 (482)
                      +|+.|++.+ +.+|++|||||||||||||++|+++|+++|++||++++++|+|+||||||+||||+|||+.+        
T Consensus       697 ~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------  768 (900)
T PLN03202        697 LLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------  768 (900)
T ss_pred             HHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------
Confidence            999999876 59999999999999999999999999999999999998899999999999999999999863        


Q ss_pred             CCCCCCCCeEEcCcccCCCcccEEEeeCcccC
Q 039048          451 RSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ  482 (482)
Q Consensus       451 ~~~N~~pGTvVD~~vt~p~~~dFyL~Sh~~lq  482 (482)
                      +.+||+||||||++||+|.+||||||||.++|
T Consensus       769 ~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q  800 (900)
T PLN03202        769 SPDNVPPGTVVDNKICHPRNNDFYMCAHAGMI  800 (900)
T ss_pred             CCCCCCCceEeccccccCCcceEEEecccccc
Confidence            35899999999999999999999999999997

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>TIGR00194 uvrC excinuclease ABC, C subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 2e-66
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 2e-66
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 9e-27
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 5e-24
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 5e-18
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-17
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 7e-14
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 8e-14
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-13
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 3e-13
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 8e-05
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 1e-04
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/245 (55%), Positives = 158/245 (64%), Gaps = 19/245 (7%)
Query: 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 297
           +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N +L+   Q R P V  
Sbjct: 534 VKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQ 590
Query: 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQ 357
           +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q H +EIIQDL     
Sbjct: 591 QPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL----- 644
Query: 358 DPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417
                     M+RELLI F +ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC  L
Sbjct: 645 --------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL 696
Query: 418 EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNS 477
           E+ Y P +TF+VVQKRHHTRLF  D N R    +SGNI  GT VDT I HPTEFDFYL S
Sbjct: 697 EKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCS 754
Query: 478 HAGIQ 482
           HAGIQ
Sbjct: 755 HAGIQ 759
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 5e-81
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 2e-54
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 2e-73
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-69
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 3e-31
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 3e-59
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 4e-42
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 5e-08
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 5e-40
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 2e-33
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 5e-33
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 3e-16
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 5e-16
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 1e-15
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 1e-07
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 4e-07
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  267 bits (684), Expect = 5e-81
 Identities = 134/245 (54%), Positives = 157/245 (64%), Gaps = 19/245 (7%)

Query: 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 297
           +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N +L+    +  P V  
Sbjct: 534 VKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLP---QGRPPVFQ 590

Query: 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQ 357
           +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q H +EIIQDL     
Sbjct: 591 QPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL----- 644

Query: 358 DPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417
                     M+RELLI F +ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC  L
Sbjct: 645 --------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL 696

Query: 418 EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNS 477
           E+ Y P +TF+VVQKRHHTRLF  D N  +   +SGNI  GT VDT I HPTEFDFYL S
Sbjct: 697 EKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVDTKITHPTEFDFYLCS 754

Query: 478 HAGIQ 482
           HAGIQ
Sbjct: 755 HAGIQ 759
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.34
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.32
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.31
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.24
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 97.79
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 97.73
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 96.93
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 95.56
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 87.03
3qir_A148 PIWI-like protein 2; structural genomics consortiu 86.78
2nrr_A159 Uvrabc system protein C; UVRC, endonuclase, NER, h 83.38
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=7.5e-105  Score=891.63  Aligned_cols=455  Identities=48%  Similarity=0.774  Sum_probs=396.8

Q ss_pred             CeecCCCCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEE
Q 039048            1 VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRV   80 (482)
Q Consensus         1 V~I~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~~~~~~V~~~~~~~~~~~~~~~~~~~~f~V   80 (482)
                      |+|+|+..+++++|+||+++++++....|++..+||||+++|||+++||+++..+++.+...++        +++++|+|
T Consensus        61 V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~--------~~~~~~~V  132 (861)
T 4f3t_A           61 LDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE--------GKDRIFKV  132 (861)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC---------------CEEE
T ss_pred             EEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCC--------CCCcEEEE
Confidence            6899998899999999999999875556887778999999999999999865544444322111        35678999


Q ss_pred             EEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCCCCccccccccccCCCCCcccCCCceeeeeeeeeeeeecc
Q 039048           81 VIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQ  160 (482)
Q Consensus        81 ~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps~~~~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSvRp~~  160 (482)
                      +|++++++++++|.+||+|.....++++||||||||||.|+.++..+|||||.++.+...+||+|+|+|+||||||||++
T Consensus       133 ~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~  212 (861)
T 4f3t_A          133 SIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSL  212 (861)
T ss_dssp             EEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECS
T ss_pred             EEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecC
Confidence            99999999999999999999888889999999999999999899999999998765445789999999999999999999


Q ss_pred             cceeeeeecceeeeeccccHHHHHHHHhhc-----cCCCCCHHHHHHHHHHhcCcEEEEEeecC-ceeeEEecccCCccc
Q 039048          161 MGLSLNIDVSARSFYEPILATEFVQYYCRD-----LSRPLSDQVRLKVKKALKGIKVVLTHMEY-NKSYKITGISSQPMS  234 (482)
Q Consensus       161 ~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~k~LkglkV~~~h~~~-~r~ykI~gl~~~~~~  234 (482)
                      ++|+|||||||++||++++|+|+|.++++.     ..+++++.++.+++++|+|++|+++|++. .|+|+|.+|+..+++
T Consensus       213 ~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~  292 (861)
T 4f3t_A          213 WKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPAS  292 (861)
T ss_dssp             SSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETT
T ss_pred             CccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCC
Confidence            999999999999999999999999998532     13456778899999999999999999754 478999999754432


Q ss_pred             c--------------hh---------------------------------------------------------------
Q 039048          235 Q--------------LI---------------------------------------------------------------  237 (482)
Q Consensus       235 ~--------------~~---------------------------------------------------------------  237 (482)
                      .              ++                                                               
T Consensus       293 ~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~  372 (861)
T 4f3t_A          293 HQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATAR  372 (861)
T ss_dssp             TCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCC
T ss_pred             CcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHcc
Confidence            2              11                                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 039048          238 --------------------------------------------------------------------------------  237 (482)
Q Consensus       238 --------------------------------------------------------------------------------  237 (482)
                                                                                                      
T Consensus       373 ~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~  452 (861)
T 4f3t_A          373 SAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKV  452 (861)
T ss_dssp             CHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCC
T ss_pred             CHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccce
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 039048          238 --------------------------------------------------------------------------------  237 (482)
Q Consensus       238 --------------------------------------------------------------------------------  237 (482)
                                                                                                      
T Consensus       453 W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~~~~Y~  532 (861)
T 4f3t_A          453 WAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYA  532 (861)
T ss_dssp             EEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSSCTHHH
T ss_pred             eEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCCccHHH
Confidence                                                                                            


Q ss_pred             -hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCC
Q 039048          238 -IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS  316 (482)
Q Consensus       238 -iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~  316 (482)
                       ||++||+++||+||||+.+++.|.++||+.||++|||+||||+||.+.+.   ..|.+...+|||||+||+||+|++..
T Consensus       533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~  609 (861)
T 4f3t_A          533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK  609 (861)
T ss_dssp             HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred             HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence             99999999999999999999998899999999999999999999998653   23555568999999999999998767


Q ss_pred             CCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCCCc
Q 039048          317 SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSE  396 (482)
Q Consensus       317 ~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGVse  396 (482)
                      .||+||||||+| .++++|.+.+++|.+++|+|++|             ++|++++|+.|++.++.+|++||||||||||
T Consensus       610 ~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVse  675 (861)
T 4f3t_A          610 KPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSE  675 (861)
T ss_dssp             CCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCG
T ss_pred             CceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCCh
Confidence            899999999999 89999999999999999999999             9999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEEe
Q 039048          397 GQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLN  476 (482)
Q Consensus       397 gq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL~  476 (482)
                      |||++|+++|+++|++||.+++++|+|+||||||+||||+|||+.+.++  ..++.+||+||||||++||||.+|||||+
T Consensus       676 gq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~  753 (861)
T 4f3t_A          676 GQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLC  753 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEE
Confidence            9999999999999999999998899999999999999999999986532  24678999999999999999999999999


Q ss_pred             eCcccC
Q 039048          477 SHAGIQ  482 (482)
Q Consensus       477 Sh~~lq  482 (482)
                      ||+++|
T Consensus       754 Sh~~~q  759 (861)
T 4f3t_A          754 SHAGIQ  759 (861)
T ss_dssp             CSCCCS
T ss_pred             EEeccc
Confidence            999987
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 482
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 3e-52
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 4e-45
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 1e-40
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-09
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 9e-09
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 0.003
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  179 bits (455), Expect = 3e-52
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 53/246 (21%)

Query: 238 IKRVCETELGIVSQCCQPRQASRLN-MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVT 296
           +KR    +  I SQ    R     N      NVA ++  K G     L +        + 
Sbjct: 128 VKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE--------IE 178

Query: 297 DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKST 356
            +     G D++       +  ++A         E+ +Y  L S  A  E++ +      
Sbjct: 179 GKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----- 232

Query: 357 QDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACAS 416
                       I ++     +    K  +I+ +RDG            E+ A ++    
Sbjct: 233 -----------AIGDVFSLLEKLGFKKGSKIVVHRDGRLYR-------DEVAAFKKYG-- 272

Query: 417 LEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLN 476
             E Y   +  + + KR++ R F            +   + G           +      
Sbjct: 273 --ELYGYSLELLEIIKRNNPRFFS-----------NEKFIKGYFYK----LSEDSVILAT 315

Query: 477 SHAGIQ 482
            +   +
Sbjct: 316 YNQVYE 321
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.19
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 98.13
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 97.99
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Hypothetical protein AF1318
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=6.4e-42  Score=342.37  Aligned_cols=206  Identities=14%  Similarity=0.107  Sum_probs=168.6

Q ss_pred             hhhhhhhccCcceeeeccccccccc-HHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCC
Q 039048          238 IKRVCETELGIVSQCCQPRQASRLN-MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS  316 (482)
Q Consensus       238 iK~~~~~~~gi~tQci~~~~~~k~~-~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~  316 (482)
                      ||++++  .||+||||..+++.+.+ .++++||++|||+||||+||.++..    .|.   .+|||||+||+|+.     
T Consensus        34 iK~~l~--~gIptQ~v~~~tl~~~~~~~~~~nI~lqin~KlGG~pw~l~~~----~~~---~~~miIG~dv~h~~-----   99 (316)
T d1w9ha1          34 LKSYLI--NSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRID-----   99 (316)
T ss_dssp             HHHHHH--TTSCEEEEETTCC-----HHHHHHHHHHHHHHTTCBCCEECCC----GGG---TTCEEEEEEEEESS-----
T ss_pred             HHHHhc--cCCCCEEEehhhccCcchHHHHHHHHHHHHHHhCCcceEeccC----CCC---CCeEEEEEEEecCC-----
Confidence            999865  59999999999997655 5667999999999999999999753    121   46999999999964     


Q ss_pred             CCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcC-CCCceEEEEEcCCC
Q 039048          317 SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTN-FKPHRIIFYRDGVS  395 (482)
Q Consensus       317 ~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~P~~IiiyRDGVs  395 (482)
                      .++++|+++++| .+++.|.+.+..|..++|++++|             +++|+++|..|++.++ .+|++||+||||++
T Consensus       100 ~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~l~~~~~~~~~~~p~~Ii~~r~g~~  165 (316)
T d1w9ha1         100 NVNLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVSGKR  165 (316)
T ss_dssp             SSEEEEEEEEEE-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCCEEEEEEESSC
T ss_pred             CCeeeEEEEEEc-CCCCEEEEEEEEecCCCchHHHH-------------HHHHHHHHHHHHHHhCCCCCcceEEEECCcc
Confidence            468999999999 99999999999999999999998             9999999999998875 68899999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEE
Q 039048          396 EGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYL  475 (482)
Q Consensus       396 egq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL  475 (482)
                      +|+++..++.|.++|++++.+...++.|+|+||+|+||||+|||+.+.       ...||+|||+||.  +++..++||+
T Consensus       166 ~~~~~~e~~~~~~ai~~~~~~~~~~~~pk~~~I~V~Kr~~~R~f~~~~-------~~~np~~GTvVd~--~~~~~~~~~~  236 (316)
T d1w9ha1         166 PKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN-------NRFHPYEGTKVKL--SSKRYLLTLL  236 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEC--------------CCSSSCEEES--SSSEEEECCB
T ss_pred             cchHHHHHHHHHHHHHHHHHhhccCCCccEEEEEEEeecccccccccc-------cCcCCCCCCEEec--CCCeeeeEec
Confidence            999887777777777777777777899999999999999999998653       3479999999994  4555666666


Q ss_pred             eeCcc
Q 039048          476 NSHAG  480 (482)
Q Consensus       476 ~Sh~~  480 (482)
                      .+|..
T Consensus       237 ~~~~~  241 (316)
T d1w9ha1         237 QPYLK  241 (316)
T ss_dssp             CTTC-
T ss_pred             ceeEe
Confidence            65543
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure