Citrus Sinensis ID: 039073

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MLKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQKIV
Secondary Structure (PSIPRED)
cEEEEEEEEEccccccccccccccccEEEEEccccccHHHHHHHHHccccccEEccccccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccEEEcccccEEEcccccEEEccccccccccccccccccccccEEEEEcccEEcccccccccccccccccEEccccccccccEEHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEccccccccccccccccccccccccEEcHHHHHHHHccccHHccccccccccEEEcEcccccEEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHEEEEHHHEEEEccccHHHHccccccccccccccccccccccEEEcHHHHHHHHHHHHHcccccccHHHHHcccccEEcHHHHHHEEEEEHHcccccHHHHHHHHHHHHHccccHHHccccccccccHccc
Coil and Loop (DISEMBL)
MLKVFLLALKNktpklnsraakngdvfsvwnydgkisyEDLINATEEFHIKYCigtggygsvykaelpdgkVVALKKLhqsetedsAFVKSFQNEAHVLSTSVAHALSYlhhdctlsivhrdissnnilldsnLEAFVADFGTArllhvdssnrpyewaltdtlpqvnKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMgthpgellsslssssgpkimlidvldqrlsppvnqkiv
Flexible Loop (DISEMBL)
MLKVFLLALKnktpklnsraakngdvfsvWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIdvldqrlsppvnqkiv
Low Complexity Region (SEG)
MLKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEllsslssssGPKIMLIDVLDQRLSPPVNQKIV
Disordered region (IsUnstruct)
***VFLLALK**********AKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLH*******AFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG*************IMLIDV**************
Disordered Region (DISOPRED)
MLKVFLLAL*******************VWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQS*****A***SFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQ*LS********
Disordered Region (DISEMBL)
MLKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQKIV
Disordered Region (DISPRO)
MLKVFLLALKNKT*****************NYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV****RPYEW*****LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSP*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQKIV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.782	0.192	0.383	4e-39
Q9LP24	1120	Probable leucine-rich rep	no	no	0.801	0.183	0.370	3e-37
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.770	0.179	0.298	9e-25
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.638	0.135	0.298	2e-22
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.638	0.135	0.298	2e-22
Q9SX31	708	Proline-rich receptor-lik	no	no	0.649	0.235	0.314	6e-22
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.638	0.137	0.298	1e-21
C0LGF4	591	LRR receptor-like serine/	no	no	0.700	0.304	0.300	2e-21
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.642	0.163	0.320	3e-21
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.801	0.205	0.298	6e-21

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 145/287 (50%), Gaps = 86/287 (29%)

Query: 24   GDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKL----- 78
            G+  S++++DGK+ Y+++I AT EF  KY IGTGG+G VYKA+LP+  ++A+KKL     
Sbjct: 751  GETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTD 809

Query: 79   -----------------------------------HQSET-------EDSAFVKSFQN-- 94
                                               H+  T       E  +  K  +N  
Sbjct: 810  SSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDD 869

Query: 95   EAHVLS--------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL 146
            EA  L           VAHALSY+HHD + +IVHRDISS NILL  + EA ++DFGTA+L
Sbjct: 870  EAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGEDYEAKISDFGTAKL 929

Query: 147  LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD 206
            L  DSSN    W+          + G   Y A               ELAY M VTEKCD
Sbjct: 930  LKPDSSN----WS---------AVAGTYGYVA--------------PELAYAMKVTEKCD 962

Query: 207  VYSFGVVALKVLMGTHPGELLSSLSSSSGPKIM-LIDVLDQRLSPPV 252
            VYSFGV+ L+V+ G HPG+L+S+LSSS     + L  + D RL  P 
Sbjct: 963  VYSFGVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPT 1009

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 142/289 (49%), Gaps = 83/289 (28%)

Query: 22   KNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD------------ 69
            + G+  S+++ DGK  Y+D+I +T EF   + IGTGGY  VY+A L D            
Sbjct: 825  ETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKVYRANLQDTIIAVKRLHDTI 884

Query: 70   --------------GKVVALKKL-------------HQSET-------EDSAFVKSFQN- 94
                           +V AL ++             H+  T       E  +  K   N 
Sbjct: 885  DEEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKLLAND 944

Query: 95   -EAHVLS--------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
             EA  L+          VAHALSY+HHD    IVHRDISS NILLD++  A ++DFGTA+
Sbjct: 945  EEAKRLTWTKRINVVKGVAHALSYMHHDRITPIVHRDISSGNILLDNDYTAKISDFGTAK 1004

Query: 146  LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC 205
            LL  DSSN    W+          + G   Y A               E AYTM VTEKC
Sbjct: 1005 LLKTDSSN----WS---------AVAGTYGYVA--------------PEFAYTMKVTEKC 1037

Query: 206  DVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQ 254
            DVYSFGV+ L++++G HPG+L+SSLSSS G  + L  + D+R+  P  Q
Sbjct: 1038 DVYSFGVLILELIIGKHPGDLVSSLSSSPGEALSLRSISDERVLEPRGQ 1086

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 122/285 (42%), Gaps = 87/285 (30%)

Query: 25   DVFSVWNYDGK-ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLH---Q 80
            DV   + +  K  +Y+ L++AT  F     +G G  G+VYKAE+  G+V+A+KKL+   +
Sbjct: 775  DVMDSYYFPKKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGE 834

Query: 81   SETEDSAFVKSFQ----------------------------------------------- 93
              + D++F                                                    
Sbjct: 835  GASSDNSFRAEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQLQRGEKNCL 894

Query: 94   ---NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
               N  + ++   A  L YLHHDC   IVHRDI SNNILLD   +A V DFG A+L+ + 
Sbjct: 895  LDWNARYRIALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLS 954

Query: 151  SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF 210
             S              ++ + G   Y A               E AYTM VTEKCD+YSF
Sbjct: 955  YSK------------SMSAVAGSYGYIA--------------PEYAYTMKVTEKCDIYSF 988

Query: 211  GVVALKVLMGTHP-------GELLSSLSSSSGPKIMLIDVLDQRL 248
            GVV L+++ G  P       G+L++ +  S    I  I++ D RL
Sbjct: 989  GVVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTIEMFDARL 1033

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 102/241 (42%), Gaps = 77/241 (31%)

Query: 35   KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKL-HQSETEDSAFVKSFQ 93
            K+++ DL+ AT  FH    +G+GG+G VYKA+L DG VVA+KKL H S   D  F    +
Sbjct: 875  KLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEME 934

Query: 94   NEAHV---------------------------------------------------LSTS 102
                +                                                   ++  
Sbjct: 935  TIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDRKKTGIKLNWPARRKIAIG 994

Query: 103  VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
             A  L++LHH+C   I+HRD+ S+N+LLD NLEA V+DFG ARL+              D
Sbjct: 995  AARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSA-----------MD 1043

Query: 163  TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
            T   V+ + G   Y    +Y               +   + K DVYS+GVV L++L G  
Sbjct: 1044 THLSVSTLAGTPGYVPPEYY--------------QSFRCSTKGDVYSYGVVLLELLTGKQ 1089

Query: 223  P 223
            P
Sbjct: 1090 P 1090

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 102/241 (42%), Gaps = 77/241 (31%)

Query: 35   KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKL-HQSETEDSAFVKSFQ 93
            K+++ DL+ AT  FH    +G+GG+G VYKA+L DG VVA+KKL H S   D  F    +
Sbjct: 875  KLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEME 934

Query: 94   NEAHV---------------------------------------------------LSTS 102
                +                                                   ++  
Sbjct: 935  TIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDRKKIGIKLNWPARRKIAIG 994

Query: 103  VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
             A  L++LHH+C   I+HRD+ S+N+LLD NLEA V+DFG ARL+              D
Sbjct: 995  AARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSA-----------MD 1043

Query: 163  TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
            T   V+ + G   Y    +Y               +   + K DVYS+GVV L++L G  
Sbjct: 1044 THLSVSTLAGTPGYVPPEYY--------------QSFRCSTKGDVYSYGVVLLELLTGKQ 1089

Query: 223  P 223
            P
Sbjct: 1090 P 1090

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SX31|PERK9_ARATH Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 103/242 (42%), Gaps = 75/242 (30%)

Query: 31  NYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLH----QSETEDS 86
           N     SYE+L+ AT  F  +  +G GG+G VYK  LPDG+VVA+K+L     Q + E  
Sbjct: 360 NSKALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFK 419

Query: 87  AFVKSFQNEAHV---------------------------------------------LST 101
           A V++     H                                              ++ 
Sbjct: 420 AEVETLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDLYFHLHGEKSVLDWATRVKIAA 479

Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
             A  L+YLH DC   I+HRDI S+NILL+ N +A V+DFG ARL            AL 
Sbjct: 480 GAARGLAYLHEDCHPRIIHRDIKSSNILLEDNFDARVSDFGLARL------------ALD 527

Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
                  ++IG   Y A               E A +  +TEK DV+SFGVV L+++ G 
Sbjct: 528 CNTHITTRVIGTFGYMA--------------PEYASSGKLTEKSDVFSFGVVLLELITGR 573

Query: 222 HP 223
            P
Sbjct: 574 KP 575

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 102/241 (42%), Gaps = 77/241 (31%)

Query: 35   KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKL-HQSETEDSAFVKSFQ 93
            K+++ DL+ AT  FH    IG+GG+G VYKA L DG  VA+KKL H S   D  F+   +
Sbjct: 870  KLTFADLLQATNGFHNDSLIGSGGFGDVYKAILKDGSAVAIKKLIHVSGQGDREFMAEME 929

Query: 94   NEAHV---------------------------------------------------LSTS 102
                +                                                   ++  
Sbjct: 930  TIGKIKHRNLVPLLGYCKVGDERLLVYEFMKYGSLEDVLHDPKKAGVKLNWSTRRKIAIG 989

Query: 103  VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
             A  L++LHH+C+  I+HRD+ S+N+LLD NLEA V+DFG ARL+              D
Sbjct: 990  SARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSA-----------MD 1038

Query: 163  TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
            T   V+ + G   Y    +Y               +   + K DVYS+GVV L++L G  
Sbjct: 1039 THLSVSTLAGTPGYVPPEYY--------------QSFRCSTKGDVYSYGVVLLELLTGKR 1084

Query: 223  P 223
            P
Sbjct: 1085 P 1085

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 110/263 (41%), Gaps = 83/263 (31%)

Query: 15  KLNSRAAKNGDVFSVWNYDGKISY--EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKV 72
           ++ S A   G   S+  + G + Y  +D+I   E  + ++ IG GG+G+VYK  + DGKV
Sbjct: 271 EIKSLAKDVGGGASIVMFHGDLPYSSKDIIKKLEMLNEEHIIGCGGFGTVYKLAMDDGKV 330

Query: 73  VALKKLHQSETEDSAFVKSFQNEAHVLST------------------------------- 101
            ALK++ +    +  F + F+ E  +L +                               
Sbjct: 331 FALKRILKL---NEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLLYDYLPGGSL 387

Query: 102 ---------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD 140
                                  A  LSYLHHDC+  I+HRDI S+NILLD NLEA V+D
Sbjct: 388 DEALHERGEQLDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSD 447

Query: 141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV 200
           FG A+LL  + S              +  I+     Y    Y Q                
Sbjct: 448 FGLAKLLEDEES-------------HITTIVAGTFGYLAPEYMQSGR------------- 481

Query: 201 VTEKCDVYSFGVVALKVLMGTHP 223
            TEK DVYSFGV+ L+VL G  P
Sbjct: 482 ATEKTDVYSFGVLVLEVLSGKRP 504

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 101/243 (41%), Gaps = 78/243 (32%)

Query: 33  DGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLH----QSETEDSAF 88
           D ++SY+DL+++T  F     IG GG+G VYKA LPDGK VA+KKL     Q E E  A 
Sbjct: 719 DKELSYDDLLDSTNSFDQANIIGCGGFGMVYKATLPDGKKVAIKKLSGDCGQIEREFEAE 778

Query: 89  VKSFQNEAH------------------------------------------------VLS 100
           V++     H                                                 ++
Sbjct: 779 VETLSRAQHPNLVLLRGFCFYKNDRLLIYSYMENGSLDYWLHERNDGPALLKWKTRLRIA 838

Query: 101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL 160
              A  L YLH  C   I+HRDI S+NILLD N  + +ADFG ARL+       PYE  +
Sbjct: 839 QGAAKGLLYLHEGCDPHILHRDIKSSNILLDENFNSHLADFGLARLMS------PYETHV 892

Query: 161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG 220
           +  L      +G + Y                 E     V T K DVYSFGVV L++L  
Sbjct: 893 STDL------VGTLGYIP--------------PEYGQASVATYKGDVYSFGVVLLELLTD 932

Query: 221 THP 223
             P
Sbjct: 933 KRP 935

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 123/298 (41%), Gaps = 92/298 (30%)

Query: 16  LNSRAAKNGDVFSVWNYDG----KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGK 71
           + +R+ +N      W          + +D++++ +E +I   IG GG G VYK  +P G 
Sbjct: 657 IKARSLRNASEAKAWRLTAFQRLDFTCDDVLDSLKEDNI---IGKGGAGIVYKGTMPKGD 713

Query: 72  VVALKKL---HQSETEDSAFVKSFQ----------------------------------- 93
           +VA+K+L       + D  F    Q                                   
Sbjct: 714 LVAVKRLATMSHGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSL 773

Query: 94  --------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVA 139
                         N  + ++   A  L YLHHDC+  IVHRD+ SNNILLDSN EA VA
Sbjct: 774 GEVLHGKKGGHLHWNTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVA 833

Query: 140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM 199
           DFG A+ L  DS           T   ++ I G   Y A               E AYT+
Sbjct: 834 DFGLAKFLQ-DSG----------TSECMSAIAGSYGYIA--------------PEYAYTL 868

Query: 200 VVTEKCDVYSFGVVALKVLMGTHP-GELLSSL-------SSSSGPKIMLIDVLDQRLS 249
            V EK DVYSFGVV L+++ G  P GE    +       S +   K  ++ V+D RLS
Sbjct: 869 KVDEKSDVYSFGVVLLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVLKVIDLRLS 926

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
296082878	1699	unnamed protein product [Vitis vinifera]	0.848	0.128	0.552	9e-71
296087789	975	unnamed protein product [Vitis vinifera]	0.813	0.214	0.552	5e-68
359484066	843	PREDICTED: probable LRR receptor-like se	0.867	0.264	0.486	1e-67
296085303	789	unnamed protein product [Vitis vinifera]	0.867	0.282	0.486	1e-67
297738138	577	unnamed protein product [Vitis vinifera]	0.875	0.389	0.520	2e-66
359484068	868	PREDICTED: probable leucine-rich repeat	0.887	0.262	0.472	1e-65
296085307	874	unnamed protein product [Vitis vinifera]	0.887	0.260	0.472	2e-65
359484063	1003	PREDICTED: probable LRR receptor-like se	0.856	0.219	0.478	2e-65
147845534	1445	hypothetical protein VITISV_010230 [Viti	0.856	0.152	0.475	6e-65
225452751	878	PREDICTED: probable leucine-rich repeat	0.848	0.248	0.481	1e-63

>gi|296082878|emb|CBI22179.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 142/257 (55%), Positives = 173/257 (67%), Gaps = 39/257 (15%)

Query: 12   KTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGK 71
            K   L +   KNGD+FS+W+YDG I+Y+D+I ATE+F IKYCIGTGGYGSVY+A+LP GK
Sbjct: 1415 KNQLLETTKVKNGDLFSIWDYDGVIAYQDIIQATEDFDIKYCIGTGGYGSVYRAQLPSGK 1474

Query: 72   VVALKKLHQSETEDSAFVKSFQNEAHVLS------------TSVAHALSYLHHDCTLSIV 119
            VVALKKLH  E  D  ++KSF+NE  +L+             S+A+ALSY+HHDC L I+
Sbjct: 1475 VVALKKLHGWERGDPTYLKSFENEVQMLTRIRHRNIRVNVVKSIANALSYMHHDCDLPII 1534

Query: 120  HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL 179
            HRDISSNNILLDS LEAFV+DFGTARLL  DSSNR               ++G   Y A 
Sbjct: 1535 HRDISSNNILLDSKLEAFVSDFGTARLLDNDSSNRTL-------------LVGTYGYIA- 1580

Query: 180  WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIM 239
                          ELAYTMVVTEKCD+YSFG+VAL+ +MG HPGE ++SLSSSS     
Sbjct: 1581 -------------PELAYTMVVTEKCDIYSFGMVALETMMGMHPGEFVTSLSSSSTQNTT 1627

Query: 240  LIDVLDQRLSPPVNQKI 256
            L DVLD RLS P + ++
Sbjct: 1628 LKDVLDSRLSSPKSTQV 1644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087789|emb|CBI35045.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 171/248 (68%), Gaps = 39/248 (15%)

Query: 21  AKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQ 80
            + GD+FSVW+YDG I+Y+D+I +TE F IKYC+G GGYGSVY+A+LP GKVVALKKLH 
Sbjct: 320 TRRGDLFSVWDYDGTIAYQDIIQSTENFDIKYCVGVGGYGSVYRAQLPCGKVVALKKLHG 379

Query: 81  SETEDSAFVKSFQNEAHVLS------------TSVAHALSYLHHDCTLSIVHRDISSNNI 128
            E E+  ++KSF+NEA +LS             S+AHALSY+HHDC+  I+HRDISSNN+
Sbjct: 380 WEREEPTYLKSFENEAQILSKIRHRNIRLNVVKSIAHALSYMHHDCSPPIIHRDISSNNV 439

Query: 129 LLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNL 188
           LL+S LEAFV+DFGTARLL  DSS          TL     ++G   Y A          
Sbjct: 440 LLNSQLEAFVSDFGTARLLDPDSS--------IQTL-----LVGTYGYIA---------- 476

Query: 189 MPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRL 248
                ELAYTM VT+KCDVYSFGVVAL+ +MG HP E+++SLSSSSG  I+L DVLD RL
Sbjct: 477 ----PELAYTMTVTKKCDVYSFGVVALETMMGKHPREVITSLSSSSGQDILLRDVLDPRL 532

Query: 249 SPPVNQKI 256
           + P N ++
Sbjct: 533 ALPENPQV 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 179/306 (58%), Gaps = 83/306 (27%)

Query: 7   LALKNKTPKLNSR--AAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYK 64
           L L  KT K+ ++    KNGD+FSVWNYDGKI+YED+I ATE+F IKYCIGTGGYGSVYK
Sbjct: 510 LLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATEDFDIKYCIGTGGYGSVYK 569

Query: 65  AELPDGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------- 97
           A+LP G VVALKKLH  E +++ ++KSFQNE                             
Sbjct: 570 AQLPTGNVVALKKLHGWERDEAIYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIY 629

Query: 98  ----------VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNNILL 130
                     VLS                  S+ HA+ Y+HHDCT  I+HRDISSNNILL
Sbjct: 630 NYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILL 689

Query: 131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMP 190
           DS L+AF++DFGTARLLH DSSN+               + G   Y A            
Sbjct: 690 DSKLDAFLSDFGTARLLHPDSSNQTL-------------LAGTYGYIA------------ 724

Query: 191 FHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSP 250
              ELAYTMVVTEKCDVYSFGVVAL+ +MG HPGEL + LSSSS   IML ++LD RL  
Sbjct: 725 --PELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPS 782

Query: 251 PVNQKI 256
           P +Q++
Sbjct: 783 PQDQQV 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 179/306 (58%), Gaps = 83/306 (27%)

Query: 7   LALKNKTPKLNSR--AAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYK 64
           L L  KT K+ ++    KNGD+FSVWNYDGKI+YED+I ATE+F IKYCIGTGGYGSVYK
Sbjct: 456 LLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATEDFDIKYCIGTGGYGSVYK 515

Query: 65  AELPDGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------- 97
           A+LP G VVALKKLH  E +++ ++KSFQNE                             
Sbjct: 516 AQLPTGNVVALKKLHGWERDEAIYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIY 575

Query: 98  ----------VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNNILL 130
                     VLS                  S+ HA+ Y+HHDCT  I+HRDISSNNILL
Sbjct: 576 NYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILL 635

Query: 131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMP 190
           DS L+AF++DFGTARLLH DSSN+               + G   Y A            
Sbjct: 636 DSKLDAFLSDFGTARLLHPDSSNQTL-------------LAGTYGYIA------------ 670

Query: 191 FHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSP 250
              ELAYTMVVTEKCDVYSFGVVAL+ +MG HPGEL + LSSSS   IML ++LD RL  
Sbjct: 671 --PELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPS 728

Query: 251 PVNQKI 256
           P +Q++
Sbjct: 729 PQDQQV 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738138|emb|CBI27339.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/267 (52%), Positives = 179/267 (67%), Gaps = 42/267 (15%)

Query: 6   LLALKNKTPKLNSRAA---KNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSV 62
           LL  + KT KL    A   +NGD+FS+W+YDGKI+YED+I ATE+F IKYCIGTGGYGSV
Sbjct: 284 LLIWRRKTRKLQPEEATTTQNGDIFSIWDYDGKIAYEDIIEATEDFDIKYCIGTGGYGSV 343

Query: 63  YKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------TSVAHALSYL 110
           Y+A+L +GK VALKKLH  E+++  ++KSF NE  VLS             S+A+ALSY+
Sbjct: 344 YRAKLTNGKEVALKKLHTLESQNPTYMKSFTNEVRVLSKIRHRNIRVNVVKSIANALSYM 403

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
           H+DC   ++HRDISS NILLDS   A V+DFGTARLL  DSSN+        TL     +
Sbjct: 404 HNDCIPPLLHRDISSGNILLDSEFRAVVSDFGTARLLDPDSSNQ--------TL-----L 450

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSL 230
            G   Y A               ELAYTMVVTEKCDVYSFGV+ L+++MG HP EL++ L
Sbjct: 451 AGTYGYVA--------------PELAYTMVVTEKCDVYSFGVLTLEIMMGKHPRELVTIL 496

Query: 231 SSSSGPKIMLIDVLDQRLSPPVNQKIV 257
           S+SS   IML+D+LD RL+P ++ +++
Sbjct: 497 STSSSQNIMLVDILDPRLAPHIDPEVI 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484068|ref|XP_002271708.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/309 (47%), Positives = 179/309 (57%), Gaps = 81/309 (26%)

Query: 2   LKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGS 61
           L + LL+ K +  +  + + KNGD+FSVWNYDGKI+YED+I ATE+F IKYCIGTGGYGS
Sbjct: 532 LGILLLSRKTRRNQTKATSTKNGDIFSVWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGS 591

Query: 62  VYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH------------------------ 97
           VYKA+LP G VVALKKLH  E +++ ++KSFQNE                          
Sbjct: 592 VYKAQLPTGNVVALKKLHGWERDEATYLKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMF 651

Query: 98  -------------VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNN 127
                        VLS                  S+ HAL Y+HHD T  I+HRD+SSNN
Sbjct: 652 LIYKYMERGSLYCVLSNEVEALELDWIKRVNVIKSIVHALCYMHHDSTPPIIHRDVSSNN 711

Query: 128 ILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHN 187
           ILLD  L+AF++DFGTARLLH DSSN+        TL     + G   Y A         
Sbjct: 712 ILLDFKLDAFLSDFGTARLLHPDSSNQ--------TL-----LAGTYGYIA--------- 749

Query: 188 LMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQR 247
                 ELAYTM VTEKCDVYSFGVVAL+ +MG HP EL + LSSSS   IML D+LD R
Sbjct: 750 -----PELAYTMAVTEKCDVYSFGVVALETMMGRHPRELFTLLSSSSAQNIMLTDILDSR 804

Query: 248 LSPPVNQKI 256
           L  P ++++
Sbjct: 805 LPSPQDRQV 813

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085307|emb|CBI29039.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/309 (47%), Positives = 179/309 (57%), Gaps = 81/309 (26%)

Query: 2   LKVFLLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGS 61
           L + LL+ K +  +  + + KNGD+FSVWNYDGKI+YED+I ATE+F IKYCIGTGGYGS
Sbjct: 538 LGILLLSRKTRRNQTKATSTKNGDIFSVWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGS 597

Query: 62  VYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH------------------------ 97
           VYKA+LP G VVALKKLH  E +++ ++KSFQNE                          
Sbjct: 598 VYKAQLPTGNVVALKKLHGWERDEATYLKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMF 657

Query: 98  -------------VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNN 127
                        VLS                  S+ HAL Y+HHD T  I+HRD+SSNN
Sbjct: 658 LIYKYMERGSLYCVLSNEVEALELDWIKRVNVIKSIVHALCYMHHDSTPPIIHRDVSSNN 717

Query: 128 ILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHN 187
           ILLD  L+AF++DFGTARLLH DSSN+        TL     + G   Y A         
Sbjct: 718 ILLDFKLDAFLSDFGTARLLHPDSSNQ--------TL-----LAGTYGYIA--------- 755

Query: 188 LMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQR 247
                 ELAYTM VTEKCDVYSFGVVAL+ +MG HP EL + LSSSS   IML D+LD R
Sbjct: 756 -----PELAYTMAVTEKCDVYSFGVVALETMMGRHPRELFTLLSSSSAQNIMLTDILDSR 810

Query: 248 LSPPVNQKI 256
           L  P ++++
Sbjct: 811 LPSPQDRQV 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484063|ref|XP_002270651.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 174/301 (57%), Gaps = 81/301 (26%)

Query: 10  KNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD 69
           +N+T     +  KNGD+FS+WNYDGKI+YED+I ATE+F IKYCIGTGGYG+VYKA+LP 
Sbjct: 675 QNQTKTPLKKNEKNGDIFSIWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGTVYKAQLPT 734

Query: 70  GKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------------- 97
           G VVALKKLH  E +++ + KSFQNE                                  
Sbjct: 735 GNVVALKKLHGWERDEATYFKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMFLIYKYMER 794

Query: 98  -----VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE 135
                VLS                  S+ HAL Y+HHD TL I+HRDISS+NILLDS L+
Sbjct: 795 GSLFGVLSNEVEALELDWIKRVNVVKSIVHALCYMHHDYTLPIIHRDISSSNILLDSKLD 854

Query: 136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVEL 195
           AF++DFGTARLLH DSSN+               + G   Y A               EL
Sbjct: 855 AFLSDFGTARLLHHDSSNQTV-------------LAGTYGYIA--------------PEL 887

Query: 196 AYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQK 255
           AYTMVVTEKCDVYSFGVVAL+ +MG HP EL + LSSSS   IML D+LD RL  P +Q+
Sbjct: 888 AYTMVVTEKCDVYSFGVVALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPSPQDQQ 947

Query: 256 I 256
           +
Sbjct: 948 V 948

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845534|emb|CAN78497.1| hypothetical protein VITISV_010230 [Vitis vinifera]

 Score =  253 bits (646), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/301 (47%), Positives = 173/301 (57%), Gaps = 81/301 (26%)

Query: 10  KNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD 69
           +N+T     +  KNGD+FS+WNYDGKI+YED+I ATE+F IKYCIGTGGYG+VYKA+LP 
Sbjct: 582 QNQTKTPLKKNEKNGDIFSIWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGTVYKAQLPT 641

Query: 70  GKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------------- 97
           G VVALKKLH  E +++ + KSFQNE                                  
Sbjct: 642 GNVVALKKLHGWERDEATYXKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMFLIYKYMER 701

Query: 98  -----VLST-----------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE 135
                VLS                  S+ HAL Y+HHD T  I+HRDISS+NILLDS L+
Sbjct: 702 GSLFGVLSNEVEALELDWIKRVNVVKSIVHALCYMHHDYTXPIIHRDISSSNILLDSKLD 761

Query: 136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVEL 195
           AF++DFGTARLLH DSSN+               + G   Y A               EL
Sbjct: 762 AFLSDFGTARLLHHDSSNQTV-------------LAGTYGYIA--------------PEL 794

Query: 196 AYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQK 255
           AYTMVVTEKCDVYSFGVVAL+ +MG HP EL + LSSSS   IML D+LD RL  P +Q+
Sbjct: 795 AYTMVVTEKCDVYSFGVVALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPSPQDQQ 854

Query: 256 I 256
           +
Sbjct: 855 V 855

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/301 (48%), Positives = 177/301 (58%), Gaps = 83/301 (27%)

Query: 10  KNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD 69
           KN+ PK  +   KNGD+FS+W+YDG I+Y+D+I ATE+F IKYCIGTGGYGSVY+A+LP 
Sbjct: 552 KNQLPK--TTKVKNGDLFSIWDYDGVIAYQDIIQATEDFDIKYCIGTGGYGSVYRAQLPS 609

Query: 70  GKVVALKKLHQSETEDSAFVKSF------------------------------------- 92
           GKVVALKKLH  E +D  ++KSF                                     
Sbjct: 610 GKVVALKKLHGWERDDPTYLKSFENEVQMLSRIQHRNIVKLHGFCLHNKCMFLVYKYMEK 669

Query: 93  -------QNEAHVLS----------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE 135
                  ++E  V+             +A+ALSY+HHD TL I+HRDISSNNILLDS LE
Sbjct: 670 GSLYCMLRDEVEVVQLDWIKRVNVVKGIANALSYMHHDSTLPIIHRDISSNNILLDSKLE 729

Query: 136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVEL 195
           AFVADFGTARLL  DSSN+        TL     + G   Y A               EL
Sbjct: 730 AFVADFGTARLLDPDSSNQ--------TL-----LAGTYGYIA--------------PEL 762

Query: 196 AYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQK 255
           AYTMVVTEKCDVYSFG+VAL+ +MG HPG+L++SLS+SS   I L DVLD RLS P   +
Sbjct: 763 AYTMVVTEKCDVYSFGMVALETIMGKHPGDLVTSLSASSTQNITLKDVLDSRLSSPKGPQ 822

Query: 256 I 256
           +
Sbjct: 823 V 823

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.198	0.045	0.686	1.3e-36
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.517	0.127	0.308	6.3e-24
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.229	0.053	0.508	1.5e-23
TAIR|locus:2206179	592	FEI1 "FEI 1" [Arabidopsis thal	0.194	0.084	0.64	3.6e-23
TAIR|locus:2058759	589	FEI2 "FEI 2" [Arabidopsis thal	0.194	0.084	0.62	9.9e-22
UNIPROTKB|Q942F3	1121	P0480C01.18-1 "cDNA clone:J033	0.287	0.066	0.426	2.1e-20
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.171	0.036	0.590	1.4e-19
TAIR|locus:2019255	1106	AT1G74360 [Arabidopsis thalian	0.214	0.049	0.527	2.4e-19
TAIR|locus:2155700	456	AT5G65530 [Arabidopsis thalian	0.369	0.208	0.342	9.2e-19
TAIR|locus:2180617	1005	AT5G25930 [Arabidopsis thalian	0.221	0.056	0.482	9.8e-19

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query:   103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
             VAHALSY+HHD    IVHRDISS NILLD++  A ++DFGTA+LL  DSSN
Sbjct:   962 VAHALSYMHHDRITPIVHRDISSGNILLDNDYTAKISDFGTAKLLKTDSSN 1012

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
 Identities = 46/149 (30%), Positives = 83/149 (55%)

Query:     7 LALKNKTPKLNSR--AAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYK 64
             +  + +T ++     +   G+  S++++DGK+ Y+++I AT EF  KY IGTGG+G VYK
Sbjct:   732 ICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYK 791

Query:    65 AELPDGKVVALKKLHQSETEDSAFV-----KSFQNEAHVLST----SVAHALSYLHHDCT 115
             A+LP+  ++A+KKL+  ET DS+       + F NE   L+     +V     +  H   
Sbjct:   792 AKLPNA-IMAVKKLN--ETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRN 848

Query:   116 LSIVHRDISSNNI--LLDSNLEAFVADFG 142
               +V+  +   ++  +L+++ EA   D+G
Sbjct:   849 TFLVYEYMERGSLRKVLENDDEAKKLDWG 877

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
 Identities = 30/59 (50%), Positives = 37/59 (62%)

Query:    94 NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
             N  + ++   A  L YLHHDC   IVHRDI SNNILLD   +A V DFG A+L+ +  S
Sbjct:   898 NARYRIALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYS 956

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2206179 FEI1 "FEI 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query:   104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
             A  LSYLHHDC+  I+HRDI S+NILLD NLEA V+DFG A+LL  + S+
Sbjct:   412 AKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESH 461

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2058759 FEI2 "FEI 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 9.9e-22, Sum P(3) = 9.9e-22
 Identities = 31/50 (62%), Positives = 39/50 (78%)

Query:   104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
             A  L+YLHHDC+  I+HRDI S+NILLD NLEA V+DFG A+LL  + S+
Sbjct:   409 AKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESH 458

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q942F3 P0480C01.18-1 "cDNA clone:J033069J12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 147 (56.8 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
 Identities = 32/75 (42%), Positives = 43/75 (57%)

Query:    36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKL-HQSETEDSAFVKSFQN 94
             ++  DL+ AT  FHI   IG+GG+G VYKA+L DGKVVA+KKL H S   D  F    + 
Sbjct:   795 LTLADLVEATNGFHIACQIGSGGFGDVYKAQLKDGKVVAIKKLIHVSGQGDREFTAEMET 854

Query:    95 EAHVLSTSVAHALSY 109
                +   ++   L Y
Sbjct:   855 IGKIKHRNLVPLLGY 869

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query:   104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
             A  L++LHH+C+  I+HRD+ S+N+LLD NLEA V+DFG ARL+
Sbjct:   991 ARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLM 1034

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2019255 AT1G74360 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query:    99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
             ++T VA  L +LHH+C  SIVHRD+ ++N+LLD +  A V DFG ARLL+V  S+
Sbjct:   918 IATDVARGLVFLHHECYPSIVHRDVKASNVLLDKHGNARVTDFGLARLLNVGDSH 972

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2155700 AT5G65530 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 9.2e-19, Sum P(3) = 9.2e-19
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query:     1 MLKVFLLALKNKTPKLNSRAAKNGDVFSV------WNYDGKISYEDLINATEEFHIKYCI 54
             +L  + L  K K PKL+  +  + D   +      W      ++++L+ AT+ F+ +  I
Sbjct:    94 LLASYELTRKKKQPKLSPCSENDFDCDQILVAKPSWR---NFTFDELVAATDNFNPENMI 150

Query:    55 GTGGYGSVYKAELPDGKVVALKKL--HQSETED--SAFVKSFQNEAHV 98
             G GG+  VYK  LPDG+ VA+KKL  H  E E+  S F+      AHV
Sbjct:   151 GKGGHAEVYKGVLPDGETVAIKKLTRHAKEVEERVSDFLSELGIIAHV 198

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2180617 AT5G25930 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 9.8e-19, Sum P(3) = 9.8e-19
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query:    99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
             ++   A  L Y+HHDCT +I+HRD+ S+NILLDS   A +ADFG A+LL +  +  P+
Sbjct:   796 IAVGAAQGLCYMHHDCTPAIIHRDVKSSNILLDSEFNAKIADFGLAKLL-IKQNQEPH 852

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031862001 SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (722 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-17
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-16
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-15
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-14
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-12
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-11
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	3e-11
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-11
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-10
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-09
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-09
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	6e-09
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	8e-09
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-08
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-08
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-07
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	3e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-07
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	6e-07
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	6e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-06
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-06
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	5e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	5e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-05
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	3e-05
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	4e-05
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	4e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	5e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	5e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	5e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	5e-05
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	6e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	8e-05
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	8e-05
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	8e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-04
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	1e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-04
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-04
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	4e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	4e-04
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-04
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	5e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	5e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	5e-04
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	6e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	6e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	7e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	7e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	7e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	7e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	8e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	8e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	8e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	0.001
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	0.001
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	0.001
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.001
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	0.001
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.002
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.002
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.002
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.002
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.002
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.002
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.002
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	0.002
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	0.002
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	0.002
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	0.002
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	0.002
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.002
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	0.002
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.002
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	0.003
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.003
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.003
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.003
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.003
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.004
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 76.8 bits (190), Expect = 9e-17
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 81/226 (35%)

Query: 48  FHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSA------------------- 87
           + I   +G G +G VY A +   GK+VA+K + + + +                      
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 88  -FVKSFQNEAHV-----------------------------LSTSVAHALSYLHHDCTLS 117
                F++E  +                                 +  AL YLH   +  
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLH---SKG 117

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
           IVHRD+   NILLD +    +ADFG AR L        +              +G   Y 
Sbjct: 118 IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTF--------------VGTPEYM 163

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           A           P   E+       +  D++S GV+  ++L G  P
Sbjct: 164 A-----------P---EVLLGKGYGKAVDIWSLGVILYELLTGKPP 195

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 46/225 (20%), Positives = 78/225 (34%), Gaps = 83/225 (36%)

Query: 53  CIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------- 101
            +G G +GSVY A   D G+++A+K + +   +    +++ + E  +LS+          
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSV-ELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 102 ---------------------SVAH----------------------ALSYLHHDCTLSI 118
                                S++                        L+YLH   +  I
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLH---SNGI 122

Query: 119 VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA 178
           VHRDI   NIL+DS+    +ADFG A+ L              +T      + G   + A
Sbjct: 123 VHRDIKGANILVDSDGVVKLADFGCAKRLG-----------DIETGEGTGSVRGTPYWMA 171

Query: 179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                      P   E+          D++S G   +++  G  P
Sbjct: 172 -----------P---EVIRGEEYGRAADIWSLGCTVIEMATGKPP 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 71.5 bits (176), Expect = 9e-15
 Identities = 53/232 (22%), Positives = 80/232 (34%), Gaps = 90/232 (38%)

Query: 48  FHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------- 99
           + +   +G+G +G+VYKA     GK+VA+K L +   E S   ++ + E  +L       
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRS-EKSKKDQTARREIRILRRLSHPN 59

Query: 100 --------------------------------------------STSVAHALSYLHHDCT 115
                                                       +  +   L YLH    
Sbjct: 60  IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHS--- 116

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL----PQVNKII 171
             I+HRD+   NILLD N    +ADFG A+ L   SS+         T     P+V  ++
Sbjct: 117 NGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSL---TTFVGTPWYMAPEV--LL 171

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           G   Y                           K DV+S GV+  ++L G  P
Sbjct: 172 GGNGY-------------------------GPKVDVWSLGVILYELLTGKPP 198

Length = 260

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 81/214 (37%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSA--------------------FVKSF 92
           +G GG+G+VY A     GK VA+K + + ++                            F
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 93  Q------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRD 122
           +                              +E   +   +   L YLH      I+HRD
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHS---NGIIHRD 117

Query: 123 ISSNNILLDS-NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWF 181
           +   NILLDS N +  +ADFG ++LL  D S              +  I+G  +Y A   
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKLLTSDKS-------------LLKTIVGTPAYMAPEV 164

Query: 182 YFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL 215
              +                +EK D++S GV+  
Sbjct: 165 LLGKGY-------------YSEKSDIWSLGVILY 185

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 53/227 (23%), Positives = 79/227 (34%), Gaps = 81/227 (35%)

Query: 47  EFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDS------------------- 86
            F I   IG GG+G VYKA     GK VA+K +     E                     
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60

Query: 87  AFVKSFQ----------------------------NEAHV--LSTSVAHALSYLHHDCTL 116
            +  S+                              E+ +  +   +   L YLH   + 
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SN 117

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
            I+HRDI + NILL S+ E  + DFG         S +     L+DT    N ++G   +
Sbjct: 118 GIIHRDIKAANILLTSDGEVKLIDFGL--------SAQ-----LSDT-KARNTMVGTPYW 163

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            A           P   E+        K D++S G+ A+++  G  P
Sbjct: 164 MA-----------P---EVINGKPYDYKADIWSLGITAIELAEGKPP 196

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 46/217 (21%), Positives = 71/217 (32%), Gaps = 87/217 (40%)

Query: 54  IGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------- 98
           +G G +G VYK  L          VA+K L +  +E+    + F  EA +          
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEE--REEFLEEASIMKKLSHPNIV 64

Query: 99  ----------------------------------LSTS--------VAHALSYLHHDCTL 116
                                             L+          +A  + YL    + 
Sbjct: 65  RLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLE---SK 121

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
           + VHRD+++ N L+  NL   ++DFG +R ++ D   R         LP        I +
Sbjct: 122 NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGK---LP--------IKW 170

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
            A               E       T K DV+SFGV+
Sbjct: 171 MAP--------------ESLKDGKFTSKSDVWSFGVL 193

Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 53/231 (22%), Positives = 83/231 (35%), Gaps = 85/231 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLH---------QSETE-------DSAF 88
            +      +G G  G VYK    P GK+ ALKK+H         Q   E       +S +
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60

Query: 89  VKSFQN------EAHV---------------------------LSTSVAHALSYLHHDCT 115
           V           E  +                           ++  +   L YLH    
Sbjct: 61  VVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTK-- 118

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
             I+HRDI  +N+L++S  E  +ADFG +++             L +TL Q N  +G ++
Sbjct: 119 RHIIHRDIKPSNLLINSKGEVKIADFGISKV-------------LENTLDQCNTFVGTVT 165

Query: 176 YYALWFYFQRHNLM-P--FHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           Y            M P     E +Y+       D++S G+  L+  +G  P
Sbjct: 166 Y------------MSPERIQGE-SYSY----AADIWSLGLTLLECALGKFP 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 48/223 (21%), Positives = 72/223 (32%), Gaps = 100/223 (44%)

Query: 54  IGTGGYGSVYKAEL--PDGKV---VALKKLHQSETEDSAFVKSFQNEA------------ 96
           +G G +G VYK +L    GK    VA+K L +  +E    ++ F  EA            
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQ--IEEFLREARIMRKLDHPNVV 64

Query: 97  --------------------------------HVLSTS--------VAHALSYLHHDCTL 116
                                             LS S        +A  + YL      
Sbjct: 65  KLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLES---K 121

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVNKI 170
           + +HRD+++ N L+  NL   ++DFG +R L+ D   R      P  W      P+    
Sbjct: 122 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRW----MAPE---- 173

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
              +                           T K DV+SFGV+
Sbjct: 174 --SLKEG----------------------KFTSKSDVWSFGVL 192

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 54/221 (24%), Positives = 77/221 (34%), Gaps = 84/221 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVK-------------- 90
           E F I   +G G YGSVYKA     G+VVA+K +   E +    +K              
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVV-PVEEDLQEIIKEISILKQCDSPYIV 61

Query: 91  ----SFQNEAH------------------------------VLSTSVAHALSYLHHDCTL 116
               S+                                    +       L YLH   + 
Sbjct: 62  KYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SN 118

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
             +HRDI + NILL+   +A +ADFG +               LTDT+ + N +IG    
Sbjct: 119 KKIHRDIKAGNILLNEEGQAKLADFGVSG-------------QLTDTMAKRNTVIGT--- 162

Query: 177 YALWFYFQRHNLMPFHV--ELAYTMVVTEKCDVYSFGVVAL 215
              W        M   V  E+ Y      K D++S G+ A+
Sbjct: 163 -PFW--------MAPEVIQEIGY----NNKADIWSLGITAI 190

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 54/153 (35%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAF----------VKSFQNEAHVL--- 99
           IG G YG VYKA     G++VALKK+ + E E   F          ++  ++  +++   
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKI-RMENEKEGFPITAIREIKLLQKLRHP-NIVRLK 64

Query: 100 -------STSVAHALSYLHHDCT----------------------LS---------IVHR 121
                    S+     Y+ HD T                      L          I+HR
Sbjct: 65  EIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHR 124

Query: 122 DISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           DI  +NIL++++    +ADFG AR     +S  
Sbjct: 125 DIKGSNILINNDGVLKLADFGLARPYTKRNSAD 157

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 46/224 (20%), Positives = 71/224 (31%), Gaps = 101/224 (45%)

Query: 54  IGTGGYGSVYKAEL----PDGKV-VALKKLHQSETEDSAFVKSFQNEA------------ 96
           +G G +G VYK  L       +V VA+K L +  +E    ++ F  EA            
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQ--IEEFLREARIMRKLDHPNIV 64

Query: 97  ---------------------------------HVLSTS--------VAHALSYLHHDCT 115
                                              LS S        +A  + YL     
Sbjct: 65  KLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES--- 121

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVNK 169
            + +HRD+++ N L+  NL   ++DFG +R L+ D   +      P  W      P+   
Sbjct: 122 KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRW----MAPE--- 174

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
               +                           T K DV+SFGV+
Sbjct: 175 ---SLKE----------------------GKFTSKSDVWSFGVL 193

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 52/263 (19%), Positives = 89/263 (33%), Gaps = 73/263 (27%)

Query: 47  EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----- 101
            + I   +G G +G VY A   D K+VALK L +     S  V+ F  E  +L++     
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 102 SVAHALSYLHHDCTLSIV------------------------------------------ 119
           ++     +   + +L +V                                          
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH 118

Query: 120 -----HRDISSNNILLDSNLEAFV-ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
                HRDI   NILLD +       DFG A+LL    S               +  +G 
Sbjct: 119 SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALP-------STSVGT 171

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSS 233
             Y A           P  +        +   D++S G+   ++L G  P E   + S++
Sbjct: 172 PGYMA-----------PEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSAT 220

Query: 234 SGPKIMLIDVLDQRLSPPVNQKI 256
           S    +++++    L+ P++   
Sbjct: 221 SQTLKIILELPTPSLASPLSPSN 243

Length = 384

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 73/236 (30%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----------KLHQSETEDSA------ 87
           ++F     IG G + +V  A E    K  A+K           K+   + E         
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNG 60

Query: 88  ---FVK---SFQNEAHV---------------------LSTSVA--------HALSYLHH 112
               +K   +FQ+E ++                     L              AL YLH 
Sbjct: 61  HPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLH- 119

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
             +  I+HRD+   NILLD ++   + DFGTA++L              ++ P+ NK   
Sbjct: 120 --SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLD------------PNSSPESNKGDA 165

Query: 173 CISYYALWFYFQRHNLM---PFHV--ELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                 +    +R         +V  EL       +  D+++ G +  ++L G  P
Sbjct: 166 TNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPP 221

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 83/253 (32%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVK-------------- 90
           E++ +   IG+G YG VYKA ++  G++VA+K +     +D   ++              
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62

Query: 91  -----------------------SFQNEAHVLSTS-----VAH-------ALSYLHHDCT 115
                                  S Q+   V         +A+        L+YLH    
Sbjct: 63  VAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHE--- 119

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
              +HRDI   NILL  + +  +ADFG +               LT T+ +    IG   
Sbjct: 120 TGKIHRDIKGANILLTEDGDVKLADFGVSAQ-------------LTATIAKRKSFIGT-- 164

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV------LMGTHPGELLSS 229
               W       + P    +        KCD+++ G+ A+++      +   HP   L  
Sbjct: 165 --PYW-------MAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFL 215

Query: 230 LSSSSGPKIMLID 242
           +S S+ P   L D
Sbjct: 216 ISKSNFPPPKLKD 228

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 57/156 (36%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDS---------AFVKSFQNEAH-----V 98
           IG G YG+VYKA +L  G+ VALKK+    +E+          A +K  ++  H     +
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRL 66

Query: 99  LSTSVAHALS-----YL---HHDCTLS--------------------------------- 117
           L               L   H D  L+                                 
Sbjct: 67  LDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH 126

Query: 118 -IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
            IVHRD+   NIL+ S+ +  +ADFG AR+   + +
Sbjct: 127 RIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 56/150 (37%)

Query: 47  EFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----- 100
            + +   IG G +G VYK   L  G  VA+K++   E      +KS   E  +L      
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQI-SLEKIKEEALKSIMQEIDLLKNLKHP 59

Query: 101 ----------------------------------------------TSVAHALSYLHHDC 114
                                                           V   L+YLH   
Sbjct: 60  NIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQ- 118

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTA 144
              ++HRDI + NIL   +    +ADFG A
Sbjct: 119 --GVIHRDIKAANILTTKDGVVKLADFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 91/225 (40%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLH-QSETEDSA-----------------FVKSFQ- 93
           IG G  G VYKA +   GK VA+KK+  + + ++                   +  S+  
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV 86

Query: 94  ---------------------------NEAHV--LSTSVAHALSYLHHDCTLSIVHRDIS 124
                                      NE  +  +   V   L YLH   + +++HRDI 
Sbjct: 87  GDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIK 143

Query: 125 SNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVNKIIGCISYYA 178
           S+NILL  +    +ADFG A  L  + S R      PY  A     P+V K         
Sbjct: 144 SDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMA-----PEVIK--------- 189

Query: 179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                 R +         Y      K D++S G++ +++  G  P
Sbjct: 190 ------RKD---------YGP----KVDIWSLGIMCIEMAEGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 56/235 (23%), Positives = 78/235 (33%), Gaps = 95/235 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
           E F +  CIG G +G VYKA +    +VVA+K +   E ED   ++  Q E   LS    
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDE--IEDIQQEIQFLSQCRS 58

Query: 102 --------------------------SVA---------------------HALSYLHHDC 114
                                     S                         L YLH + 
Sbjct: 59  PYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEG 118

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVN 168
               +HRDI + NILL    +  +ADFG +  L    S R      P+  A     P+V 
Sbjct: 119 K---IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMA-----PEV- 169

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
             I    Y                          EK D++S G+ A+++  G  P
Sbjct: 170 --IKQSGY-------------------------DEKADIWSLGITAIELAKGEPP 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 54.4 bits (132), Expect = 8e-09
 Identities = 50/231 (21%), Positives = 75/231 (32%), Gaps = 89/231 (38%)

Query: 50  IKYCIGTGGYGSVYKAE-LPDGKVVALKKLH-----QSETEDS----------------A 87
           I   IG G +G VY      DGK+  LK++      + E ED+                 
Sbjct: 4   IIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIK 63

Query: 88  FVKSF------------------------QNEAHVL---------STSVAHALSYLHHDC 114
           + +SF                        Q +                +  AL YLH   
Sbjct: 64  YYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR- 122

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
              I+HRDI   NI L SN    + DFG +++L             + T+     ++G  
Sbjct: 123 --KILHRDIKPQNIFLTSNGLVKLGDFGISKVL-------------SSTVDLAKTVVGTP 167

Query: 175 SYYA--LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Y +  L    Q     P+            K D++S G V  ++    HP
Sbjct: 168 YYLSPELC---QN---KPY----------NYKSDIWSLGCVLYELCTLKHP 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 55/230 (23%), Positives = 81/230 (35%), Gaps = 83/230 (36%)

Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGKVVALKK--------LHQSETEDSAFVKSFQNEAH 97
           +F I   IG G +G V+K     D +V A+K+          + E  D A V +  + ++
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 98  VL-------------------STSVAH-------------------------ALSYLHHD 113
           ++                        H                          L++LH  
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK 120

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
               I+HRDI S N+ LD+     + D G A+LL  D++N              N I+G 
Sbjct: 121 ---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLS-DNTNF------------ANTIVG- 163

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
             YY          L P   EL       EK DV++ GVV  +   G HP
Sbjct: 164 TPYY----------LSP---ELCEDKPYNEKSDVWALGVVLYECCTGKHP 200

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL        VHRD+++ N L+  +L   ++DFG +R ++ D            
Sbjct: 114 IAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD------------ 158

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                        YY      +    +P      E     + T K DV+SFGV+
Sbjct: 159 ------------DYY----RKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVL 196

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 36/154 (23%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL     ++ VHRD+++ NIL++SNL   V+DFG +R L  D+S+  Y  +L  
Sbjct: 115 IAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGG 171

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGT 221
            +P        I+Y                         T   DV+S+G+V  +V+  G 
Sbjct: 172 KIPIRWTAPEAIAYRKF----------------------TSASDVWSYGIVMWEVMSYGE 209

Query: 222 HPGELLSSLSSSSGPKIMLIDVLDQ--RLSPPVN 253
            P   +S+          +I+ ++Q  RL PP++
Sbjct: 210 RPYWDMSNQD--------VINAIEQDYRLPPPMD 235

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 49/245 (20%), Positives = 85/245 (34%), Gaps = 90/245 (36%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKLH--QSETEDSA------------------FVKSF 92
           +G G  G V K    P GK++A+K +    +E                       F  +F
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF 68

Query: 93  QNEAHV------------------------------LSTSVAHALSYLHHDCTLSIVHRD 122
            N   +                              ++ +V   L+YLH      I+HRD
Sbjct: 69  YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEK--HKIIHRD 126

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY 182
           +  +NIL++S  +  + DFG +  L V+S       A T         +G  SY A    
Sbjct: 127 VKPSNILVNSRGQIKLCDFGVSGQL-VNSL------AKTF--------VGTSSYMA---- 167

Query: 183 FQRHNLMPFHVE-LAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLI 241
                  P  ++   Y++    K D++S G+  +++  G  P          + P   + 
Sbjct: 168 -------PERIQGNDYSV----KSDIWSLGLSLIELATGRFP------YPPENDPPDGIF 210

Query: 242 DVLDQ 246
           ++L  
Sbjct: 211 ELLQY 215

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD-----SSN 153
           ++  VA  ++YL      + +HRD+++ NIL+  +L   VADFG ARL+  D        
Sbjct: 109 MACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKK 165

Query: 154 RPYEW 158
            PY+W
Sbjct: 166 IPYKW 170

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 47/223 (21%), Positives = 73/223 (32%), Gaps = 95/223 (42%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEA--------- 96
           +E  +   IG G +G V   +   G+ VA+K L     +DS   ++F  EA         
Sbjct: 6   KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLK----DDSTAAQAFLAEASVMTTLRHP 60

Query: 97  --------------------------------------------HVLSTSVAHALSYLHH 112
                                                          +  V   + YL  
Sbjct: 61  NLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE 120

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTAR--LLHVDSSNRPYEWALTDTLPQVNKI 170
               + VHRD+++ N+L+  +L A V+DFG A+      DS   P +W    T P+    
Sbjct: 121 K---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKW----TAPE---- 169

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                  AL     R                + K DV+SFG++
Sbjct: 170 -------AL-----REK------------KFSTKSDVWSFGIL 188

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 53/197 (26%), Positives = 75/197 (38%), Gaps = 81/197 (41%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKK--------------------------- 77
           ++F I   IG G YG VYKA   D G++VALKK                           
Sbjct: 7   DKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHR 66

Query: 78  ----LHQSETEDS----------AFVKSFQ-----------------NEAHVLS--TSVA 104
               L +  T+            AF   F+                 +E H+ S    + 
Sbjct: 67  NIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLL 126

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
             L+Y H     + +HRDI  +NILL++  +  +ADFG ARL + + S RPY        
Sbjct: 127 EGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES-RPY-------- 174

Query: 165 PQVNKIIGCISYYALWF 181
              NK+I       LW+
Sbjct: 175 --TNKVI------TLWY 183

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 56/154 (36%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKL---HQSETE------------------------- 84
           IG G YG VYKA +   G++VA+KK+    +SE                           
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 85  -----DSAFVKSF--QNEAHVLSTSVAH---------------ALSYLHHDCTLSIVHRD 122
                D   V  F   +   ++                      L++ H      I+HRD
Sbjct: 67  FRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRD 123

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           +   N+L+++     +ADFG AR     S  RPY
Sbjct: 124 LKPENLLINTEGVLKLADFGLARSF--GSPVRPY 155

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 55/146 (37%)

Query: 54  IGTGGYGSVYKAEL-PDGKVVALKKL------------H-QSETE-----DSAFV----K 90
           +G GG+G V   ++    +  ALK +            H  SE E     +  F+    +
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 91  SFQNEAHV-----------------------------LSTSVAHALSYLHHDCTLSIVHR 121
           +F+++ ++                                 V  A  YLH+     I++R
Sbjct: 61  TFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHN---RGIIYR 117

Query: 122 DISSNNILLDSNLEAFVADFGTARLL 147
           D+   N+LLDSN    + DFG A+ L
Sbjct: 118 DLKPENLLLDSNGYVKLVDFGFAKKL 143

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           + E  + S  +  AL +LH    L I++RDI   NILLDSN    + DFG ++  H D  
Sbjct: 104 EQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV 160

Query: 153 NRPYEWALT 161
            R Y +  T
Sbjct: 161 ERAYSFCGT 169

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 55/154 (35%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLH----------------------QSE-------- 82
           IG G +G V+KA +   G+ VALKK+                       Q          
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 83  -TEDSAFVKSFQNEAHVLSTSVAH-------------------ALSYLHHDCTLSIVHRD 122
               S FV   +     LS  +                      ++Y+H      I+HRD
Sbjct: 68  FPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRD 124

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           +   N+L+ ++    +ADFG ARL   +   R Y
Sbjct: 125 LKPANLLISADGVLKIADFGLARLFSEEEP-RLY 157

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
             L YLH      I+HRD+  NN+L+ S+    +ADFG AR
Sbjct: 113 RGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 57/155 (36%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQS-ETEDS--------------------AFVKS 91
           +G G YG V K      G++VA+KK  +S + ED                        ++
Sbjct: 9   VGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEA 68

Query: 92  F--------------QNEAHVLSTS---------------VAHALSYLH-HDCTLSIVHR 121
           F              +    +L  S               +  A++Y H H+    I+HR
Sbjct: 69  FRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN----IIHR 124

Query: 122 DISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           DI   NIL+  +    + DFG AR L       P 
Sbjct: 125 DIKPENILVSESGVLKLCDFGFARALR-ARPASPL 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 25/125 (20%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++  +   ++YLH      IVHRDI  +N+L++S     +ADFG +R+            
Sbjct: 173 VARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRI------------ 217

Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            L  T+   N  +G I+Y +     +R N      +L +        D++S GV  L+  
Sbjct: 218 -LAQTMDPCNSSVGTIAYMSP----ERIN-----TDLNHGAYDGYAGDIWSLGVSILEFY 267

Query: 219 MGTHP 223
           +G  P
Sbjct: 268 LGRFP 272

Length = 353

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 31/131 (23%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +  AL YLH   +  I+HRDI  +NILLD      + DF  A  +  D+           
Sbjct: 109 IVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT----------- 154

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
                    G   Y A     ++           Y++ V    D +S GV A + L G  
Sbjct: 155 ---LTTSTSGTPGYMAPEVLCRQG----------YSVAV----DWWSLGVTAYECLRGKR 197

Query: 223 PGELLSSLSSS 233
           P    S     
Sbjct: 198 PYRGHSRTIRD 208

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 33/157 (21%)

Query: 67  LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
           +P G V AL  L+     +   V++F  +       +   L+YLH+     I+HRDI   
Sbjct: 88  VPGGSVAAL--LNNYGAFEETLVRNFVRQ-------ILKGLNYLHNR---GIIHRDIKGA 135

Query: 127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRH 186
           NIL+D+     ++DFG ++ L  +S +       T T      + G + + A        
Sbjct: 136 NILVDNKGGIKISDFGISKKLEANSLS-------TKTNGARPSLQGSVFWMA-------- 180

Query: 187 NLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              P   E+      T K D++S G + +++L G HP
Sbjct: 181 ---P---EVVKQTSYTRKADIWSLGCLVVEMLTGKHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 41/124 (33%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWA 159
           AL Y+H      ++HRDI + NIL+ +     + DFG A LL+ +SS R      PY  A
Sbjct: 113 ALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMA 169

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                P+V  I     Y                           K D++S G+   ++  
Sbjct: 170 -----PEV--ITEGKYYDT-------------------------KADIWSLGITIYEMAT 197

Query: 220 GTHP 223
           G  P
Sbjct: 198 GNPP 201

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            L YLH   + +++HRD+  +NIL++SN +  + DFG AR
Sbjct: 115 GLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 40/152 (26%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL       +VHR++++ NILL S+    +ADFG A LL+ D     Y      
Sbjct: 118 IAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFY------ 168

Query: 163 TLPQVNKIIGCISYYAL-WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-- 219
                ++    I + AL    F R+               T + DV+S+GV   +++   
Sbjct: 169 -----SEHKTPIKWMALESILFGRY---------------THQSDVWSYGVTVWEMMSYG 208

Query: 220 -----GTHPGE---LLSSLSSSSGPKIMLIDV 243
                G  P E   LL      + P+I  IDV
Sbjct: 209 AEPYAGMRPHEVPDLLEKGERLAQPQICTIDV 240

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 41/121 (33%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD------SS 152
           ++  +A  ++YL    + + +HRD+++ NIL+  NL   +ADFG ARL+  D       +
Sbjct: 108 MAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGA 164

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV 212
             P +W    T P                            E A     T K DV+SFG+
Sbjct: 165 KFPIKW----TAP----------------------------EAANYGRFTIKSDVWSFGI 192

Query: 213 V 213
           +
Sbjct: 193 L 193

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 55/144 (38%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLH-----------QSETE-------DSAFV----K 90
           +G G +G V    +   GK+ A+K L             + TE       +  F+     
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 91  SFQNEAHV---------------------LSTSVAH--------ALSYLHHDCTLSIVHR 121
           +FQ E  +                      S   A         AL YLH   +L I++R
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLH---SLGIIYR 117

Query: 122 DISSNNILLDSNLEAFVADFGTAR 145
           D+   NILLD++    + DFG A+
Sbjct: 118 DLKPENILLDADGHIKLTDFGLAK 141

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD-SSNRPYEWAL 160
           SV  A+ YLH +    I+HRDI + NI ++   +  + DFG A    VD ++N+ Y WA 
Sbjct: 190 SVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAA-CFPVDINANKYYGWAG 245

Query: 161 T 161
           T
Sbjct: 246 T 246

Length = 391

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 51/226 (22%), Positives = 76/226 (33%), Gaps = 82/226 (36%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKL------------------------------HQSE 82
           IG G    VY A  LP+ + VA+K++                              + S 
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF 68

Query: 83  TED--------------------SAFVKSFQNE---AHVLSTSVAHALSYLHHDCTLSIV 119
                                  S++ +   +E   A VL   V   L YLH +     +
Sbjct: 69  VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLK-EVLKGLEYLHSN---GQI 124

Query: 120 HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNK-IIGCISYYA 178
           HRDI + NILL  +    +ADFG +  L              D   +V K  +G   + A
Sbjct: 125 HRDIKAGNILLGEDGSVKIADFGVSASLADG----------GDRTRKVRKTFVGTPCWMA 174

Query: 179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG 224
                Q H          Y      K D++SFG+ A+++  G  P 
Sbjct: 175 PEVMEQVH---------GY----DFKADIWSFGITAIELATGAAPY 207

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 95  EAHV--LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           E+ V  L   +   L YLH +    I+HRD+  +N+LL       +ADFG AR   
Sbjct: 107 ESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYG 159

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 52/160 (32%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL--LHVDSSNRPY 156
            S  VA  + YL    +  +VHRD+++ NIL+  +  A V+DFG AR+  + VD+S  P 
Sbjct: 105 FSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPV 161

Query: 157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK 216
           +W   + L                    +H               + K DV+S+GV+  +
Sbjct: 162 KWTAPEAL--------------------KHKKF------------SSKSDVWSYGVLLWE 189

Query: 217 VLMGTHPGELLSSLSSSSGPKIMLIDVLDQ-----RLSPP 251
           V           S   +  PK+ L +V +      R+ PP
Sbjct: 190 VF----------SYGRAPYPKMSLKEVKECVEKGYRMEPP 219

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 57/149 (38%)

Query: 53  CIGTGGYGSVYKA-ELPDGKVVALKKLH--QSETEDSAFVKSFQNEAHVLST-------- 101
            +G G +G VY   ++  G+ +A+K++       E    V + + E  +L          
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68

Query: 102 -----------------------------------SVA--------HALSYLHHDCTLSI 118
                                              +V           + YLH +    I
Sbjct: 69  YYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN---MI 125

Query: 119 VHRDISSNNILLDSNLEAFVADFGTARLL 147
           VHRDI   NIL DS     + DFG ++ L
Sbjct: 126 VHRDIKGANILRDSAGNVKLGDFGASKRL 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 44/130 (33%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR-------- 154
           +A  + YL     ++ VHRD+++ NIL++SNLE  V+DFG +R+L  D            
Sbjct: 116 IAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKI 172

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
           P  W    T P+       I+Y                         T   DV+SFG+V 
Sbjct: 173 PIRW----TAPEA------IAYRKF----------------------TSASDVWSFGIVM 200

Query: 215 LKVL-MGTHP 223
            +V+  G  P
Sbjct: 201 WEVMSFGERP 210

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 51/142 (35%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDS----------AFVKSFQNEAHVLSTS 102
           IG G YG VYKA +   G++VALKK+ + ETED           + +K   +   V    
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKI-RLETEDEGVPSTAIREISLLKELNHPNIVRLLD 65

Query: 103 VAHALS-------YLHHD-------------------------------C-TLSIVHRDI 123
           V H+ +       +L  D                               C +  ++HRD+
Sbjct: 66  VVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDL 125

Query: 124 SSNNILLDSNLEAFVADFGTAR 145
              N+L+D      +ADFG AR
Sbjct: 126 KPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 57/163 (34%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE----- 157
           +A  + YL        VHRD+++ NIL++SNL   V+DFG +R   ++ S   Y      
Sbjct: 115 IASGMKYLSEMNY---VHRDLAARNILVNSNLVCKVSDFGLSR--RLEDSEATYTTKGGK 169

Query: 158 ----WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
               W    T P+       I+Y        R                T   DV+SFG+V
Sbjct: 170 IPIRW----TAPEA------IAY--------RK--------------FTSASDVWSFGIV 197

Query: 214 ALKVL-MGTHPGELLSSLSSSSGPKIMLIDVLDQ--RLSPPVN 253
             +V+  G  P   +S+          +I  ++   RL PP++
Sbjct: 198 MWEVMSYGERPYWDMSNQ--------DVIKAVEDGYRLPPPMD 232

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 8/59 (13%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL--HVDSSNRPYEWALTD 162
           AL Y+H   + +++HRD+  +NILL+S+    +ADFG AR L    ++   P    LTD
Sbjct: 119 ALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENP---VLTD 171

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
            L+YLH   +  IVHRDI   NI LD N    + DFG A  L
Sbjct: 111 GLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKL 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
           +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 115 IASGMKYL---SDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 159

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 26/125 (20%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++ S+  AL YLH    LS++HRD+  +N+L++ N +  + DFG +  L VDS       
Sbjct: 108 IAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL-VDS------- 157

Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            +  T+       GC  Y A     +R N  P   +  Y +    K DV+S G+  +++ 
Sbjct: 158 -VAKTID-----AGCKPYMAP----ERIN--PELNQKGYDV----KSDVWSLGITMIELA 201

Query: 219 MGTHP 223
            G  P
Sbjct: 202 TGRFP 206

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           L YLH   +  I+HRDI   N+L++SN    + DFG AR+   D S
Sbjct: 116 LKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES 158

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 101 TSVAHALSYLHH--DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           T +  AL   H+  D   +++HRD+   NI LD+N    + DFG A++L  DSS
Sbjct: 112 TQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 37/156 (23%), Positives = 55/156 (35%), Gaps = 60/156 (38%)

Query: 48  FHIKYCIGTGGYGSVYKAE-LPDGKVVALKK-----LHQSETEDS------------AFV 89
           F +   +G G YGSVYK + L D +  ALK+     + Q E ED+              +
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI 61

Query: 90  KSFQNEAHVLSTS--------------------------------------VAHALSYLH 111
            S+  EA +                                          +   L  LH
Sbjct: 62  ISY-KEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
                 I+HRD+ S NILL +N    + D G +++L
Sbjct: 121 ---EQKILHRDLKSANILLVANDLVKIGDLGISKVL 153

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 48/160 (30%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++ SV   LSYLH   +  I+HRDI  +NILL    +  + DFG +  L           
Sbjct: 110 IAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL----------- 155

Query: 159 ALTDTLPQVNKIIGCI---SYYALWFYFQRHNLMPFHVE-LAYTMVVTEKCDVYSFGVVA 214
                   VN + G     S+Y          + P  ++   Y++      DV+S G+  
Sbjct: 156 --------VNSLAGTFTGTSFY----------MAPERIQGKPYSI----TSDVWSLGLTL 193

Query: 215 LKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQ--RLSPPV 252
           L+V     P            P +  I++L     +  P 
Sbjct: 194 LEVAQNRFP------FPPEGEPPLGPIELLSYIVNMPNPE 227

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 91  SFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           S  N  + ++  +A  + YL    +L+ VHRD+++ N L+ ++    +ADFG +R L+
Sbjct: 127 SIANLLY-MAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY 180

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           L YLH     + VHRDI   NIL+D+N    +ADFG A+
Sbjct: 115 LEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAK 150

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 37/119 (31%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PY 156
               L+YLH +    ++HRDI   NILL  N E  + DFG +  L      R      PY
Sbjct: 122 TLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPY 178

Query: 157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL 215
             A     P+V   I C                    + +Y      + DV+S G+ A+
Sbjct: 179 WMA-----PEV---IACDEQP----------------DASYDA----RSDVWSLGITAI 209

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 48 FHIKYCIGTGGYGSVYKA---ELPDGKVVALKKLHQSETE 84
          + I+ CIG G YG VYKA      DGK  A+KK    + +
Sbjct: 2  YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQ 41

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV 149
             L+Y H      I+HRD+   NIL++ +    +ADFG AR   +
Sbjct: 109 RGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFGI 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRP 155
           +A  +SYL     + +VHRD+++ N+L+ S     + DFG ARLL       H D    P
Sbjct: 118 IAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVP 174

Query: 156 YEWALTDTL 164
            +W   +++
Sbjct: 175 IKWMALESI 183

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 10/73 (13%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL-----HV--DS 151
           ++  +A  +SYLH      ++H+DI++ N ++D  L+  + D   +R L     H   D+
Sbjct: 122 MAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDN 178

Query: 152 SNRPYEWALTDTL 164
            NRP +W   ++L
Sbjct: 179 ENRPVKWMALESL 191

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 59/176 (33%)

Query: 41  LINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVV----ALKKLHQS-------ETEDSAF 88
           ++  TE   +K  +G+G +G+VYK   +P+G+ V    A+K L+++       E  D A 
Sbjct: 3   ILKETELKRVK-VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 61

Query: 89  VKSFQNEAHV-------LSTSVAHALSYLHHDCTLS------------------------ 117
           + +  +  H+       LS ++      + H C L                         
Sbjct: 62  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKG 121

Query: 118 --------IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEW 158
                   +VHRD+++ N+L+ S     + DFG ARLL       + D    P +W
Sbjct: 122 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKW 177

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 80/224 (35%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSA---------------------FVKS 91
           +G G YGSVYK    P G  +A+K++ + E ++S                      F  +
Sbjct: 9   LGKGNYGSVYKVLHRPTGVTMAMKEI-RLELDESKFNQIIMELDILHKAVSPYIVDFYGA 67

Query: 92  FQNEAHV--------------------------------LSTSVAHALSYLHHDCTLSIV 119
           F  E  V                                ++ +V   L +L  +   +I+
Sbjct: 68  FFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNII 125

Query: 120 HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL 179
           HRD+   N+L++ N +  + DFG        S N      L  +L + N  IGC SY A 
Sbjct: 126 HRDVKPTNVLVNGNGQVKLCDFGV-------SGN------LVASLAKTN--IGCQSYMAP 170

Query: 180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
               +R      +    YT+    + DV+S G+  L++ +G +P
Sbjct: 171 ----ERIKSGGPNQNPTYTV----QSDVWSLGLSILEMALGRYP 206

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 63/164 (38%)

Query: 46  EEFHIKYC--IGTGGYGSVYKAE---LPD--GKVVALKKLHQSETEDSAFVKSFQNEAHV 98
           EE H+K+   +G G +GSV       L D  G+VVA+KKL  S  E    ++ F+ E  +
Sbjct: 2   EERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEH---LRDFEREIEI 58

Query: 99  LSTSVAH--------------------ALSYLHHDC------------------------ 114
           L  S+ H                     + YL +                          
Sbjct: 59  LK-SLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQI 117

Query: 115 --------TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
                   +   VHRD+++ NIL++S     + DFG  ++L  D
Sbjct: 118 CKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD 161

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 58/263 (22%), Positives = 92/263 (34%), Gaps = 80/263 (30%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQS---ETEDSAFVK----------- 90
           ++F     IG G +G V   +  D G + A+KKL +S   E E  A V+           
Sbjct: 1   DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADN 60

Query: 91  --------SFQNEAH---------------------VLSTSVAH--------ALSYLHHD 113
                   SFQ+E +                       +             A+  +H  
Sbjct: 61  PWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIH-- 118

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
             L  +HRDI  +N+LLD+     ++DFG    L        Y   L+  LP        
Sbjct: 119 -KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYR-ILSHALPSNFLDFIS 176

Query: 174 --ISYYALWFYFQRHNLMPFHVELAYTMVVT---------------EKCDVYSFGVVALK 216
             +S       ++R+        LAY+ V T               ++CD +S GV+  +
Sbjct: 177 KPMSSKRKAETWKRNRRA-----LAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYE 231

Query: 217 VLMGTHPGELLSSLSSSSGPKIM 239
           +L+G  P    S     +  KI+
Sbjct: 232 MLVGYPP--FCSDNPQETYRKII 252

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           AL+YL    +   VHRDI++ N+L+ S     + DFG +R L  +S
Sbjct: 119 ALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES 161

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 49/141 (34%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKLH-QSETE--------DSAFVKSFQNEAHVLSTSV 103
           IG G YG VYKA     G+VVALKK+   +ETE        + + +K   +   V    V
Sbjct: 8   IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDV 67

Query: 104 AHA-------LSYLHHD-------CTLS-------------------------IVHRDIS 124
            H          +LH D         LS                         ++HRD+ 
Sbjct: 68  IHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK 127

Query: 125 SNNILLDSNLEAFVADFGTAR 145
             N+L+++     +ADFG AR
Sbjct: 128 PQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 32/115 (27%)

Query: 100 STSVAHALSYL--HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE 157
              +A  +SYL         +VHRD+++ N+L+ +     + DFG A+LL VD      E
Sbjct: 115 CVQIAKGMSYLEEKR-----LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAE 169

Query: 158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV 212
                 +P        I + AL     R              + T K DV+S+GV
Sbjct: 170 GG---KVP--------IKWMALESILHR--------------IYTHKSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
             ++YLH +    I+HRDI + NIL+D+     +ADFG AR       N   
Sbjct: 126 EGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKG 174

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 32/132 (24%)

Query: 94  NEAHVLST--SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           NE  + +   SV  ALSYLH      ++HRDI S++ILL S+    ++DFG         
Sbjct: 116 NEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFG--------- 163

Query: 152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG 211
               +   ++  +P+   ++G       W   +  + +P+  E+          D++S G
Sbjct: 164 ----FCAQVSKEVPKRKSLVGT----PYWMAPEVISRLPYGTEV----------DIWSLG 205

Query: 212 VVALKVLMGTHP 223
           ++ ++++ G  P
Sbjct: 206 IMVIEMIDGEPP 217

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           AL YLH +    IVHRD++ NNI+L  + +  + DFG A+
Sbjct: 125 ALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAK 162

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP--YEWALT 161
           AL+YLH      I+HRD+ + NI LD    A + DFG A  L     + P  Y W+ T
Sbjct: 197 ALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLD-AHPDTPQCYGWSGT 250

Length = 392

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 91/236 (38%)

Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 8   EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 67

Query: 95  EAHV-------LSTSVAHALSYLHHDCTLS------------------------------ 117
             HV       L+++V      +   C L                               
Sbjct: 68  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEE 127

Query: 118 --IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTLPQVN 168
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++    
Sbjct: 128 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILH-- 185

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGTHP 223
                        Y                   T + DV+S+GV   +++  G+ P
Sbjct: 186 -----------RIY-------------------THQSDVWSYGVTVWELMTFGSKP 211

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 60/177 (33%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKL-----------HQSETEDSAFVK----------- 90
           I  G YG V+ A+    G + A+K +            Q  TE     +           
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60

Query: 91  SFQNEAHV---------------------LSTSVAH--------ALSYLHHDCTLSIVHR 121
           SFQ + ++                     L   VA         AL YLH   +  I+HR
Sbjct: 61  SFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLH---SNGIIHR 117

Query: 122 DISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA 178
           D+  +NIL+DSN    + DFG   L  V    R  +  L D   +  +I+G   Y A
Sbjct: 118 DLKPDNILIDSNGHLKLTDFG---LSKVGLVRR--QINLNDDEKEDKRIVGTPDYIA 169

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           L Y+H      ++HRD+  +N+L++ + E  + DFG AR L
Sbjct: 120 LKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGL 157

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           ++E  V    +  AL +LH    L I++RDI   NILLDS     + DFG ++    +  
Sbjct: 104 ESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE 160

Query: 153 NRPYEWALT 161
            R Y +  T
Sbjct: 161 ERAYSFCGT 169

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 55/254 (21%), Positives = 90/254 (35%), Gaps = 71/254 (27%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSE---TEDSAFVK----------- 90
           ++F +   IG G +G V+   +   G+V A+K L +S+       A V+           
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADS 60

Query: 91  --------SFQNEAH---------------------VLSTSVAH--------ALSYLHHD 113
                   SFQ+E H                     V     A         AL  +H  
Sbjct: 61  PWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVH-- 118

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
             L  +HRDI  +NIL+D++    +ADFG  + ++       Y     + L + N ++  
Sbjct: 119 -KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLV-- 175

Query: 174 ISYYALWFYFQRHNLMPFHV--------ELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                   + QR       V        E+        +CD +S GV+  ++L G  P  
Sbjct: 176 ----RRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPP-- 229

Query: 226 LLSSLSSSSGPKIM 239
             S     +  KI+
Sbjct: 230 FYSDTLQETYNKII 243

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 48 FHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETED 85
          +     +G G YG VYKA +   G++VALKK+     E+
Sbjct: 1  YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEE 39

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+
Sbjct: 107 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 35/136 (25%)

Query: 94  NEAHVLSTSVAHALSYLH-HDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLHVDS 151
           +E  +LS  V  +L   H HD    I+HRDI S NI L  N + A + DFG AR L    
Sbjct: 99  SEDQILSWFVQISLGLKHIHD--RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQL---- 152

Query: 152 SNRPYEWALTDTLPQVNKIIGCIS--YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYS 209
            N   E A T           C+   YY          L P   E+        K D++S
Sbjct: 153 -NDSMELAYT-----------CVGTPYY----------LSP---EICQNRPYNNKTDIWS 187

Query: 210 FGVVALKVLMGTHPGE 225
            G V  ++    HP E
Sbjct: 188 LGCVLYELCTLKHPFE 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 44/139 (31%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 109 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 165

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV 212
             P +W    T P+                            LAY      K DV++FGV
Sbjct: 166 KFPIKW----TAPE---------------------------SLAYNKFSI-KSDVWAFGV 193

Query: 213 VALKVL---MGTHPGELLS 228
           +  ++    M  +PG  LS
Sbjct: 194 LLWEIATYGMSPYPGIDLS 212

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)

Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLH---QSETEDSAFVKSFQNEAHVLSTS 102
           ++ +   IG G +G+V K     DGK++  K++     +E E    V    +E ++L   
Sbjct: 1   DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLV----SEVNILRE- 55

Query: 103 VAHALSYLHHDCTLSIVHRDI 123
                  L H   +    R I
Sbjct: 56  -------LKHPNIVRYYDRII 69

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           V  AL YLH    L IV+RD+   N+LLDS+    + DFG A+ +
Sbjct: 110 VVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRV 151

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           A   +  +A AL YLH   +L+IV+RD+   NILLDS     + DFG  +
Sbjct: 98  ARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 54/221 (24%), Positives = 78/221 (35%), Gaps = 83/221 (37%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------ 100
           IG G +G V+K  +    KVVA+K +   E ED   ++  Q E  VLS            
Sbjct: 12  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDE--IEDIQQEITVLSQCDSPYVTKYYG 69

Query: 101 -------------------------------TSVA-------HALSYLHHDCTLSIVHRD 122
                                          T +A         L YLH +     +HRD
Sbjct: 70  SYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRD 126

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY 182
           I + N+LL  + E  +ADFG A               LTDT  + N  +G       W  
Sbjct: 127 IKAANVLLSEHGEVKLADFGVAG-------------QLTDTQIKRNTFVGT----PFW-- 167

Query: 183 FQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                + P   E+        K D++S G+ A+++  G  P
Sbjct: 168 -----MAP---EVIKQSAYDSKADIWSLGITAIELAKGEPP 200

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           S+ +   + YL    +   +HRD+++ NIL++S     ++DFG A++L  D 
Sbjct: 115 SSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           +V  ALS+LH      ++HRDI S++ILL S+    ++DFG
Sbjct: 123 AVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            +  V   L+YLH      I+HRD+ ++N+L+D++    ++DFG ++
Sbjct: 113 FTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           A   +  VA A+ YLH   +L+I++RD+   NILLDS     + DFG
Sbjct: 98  ARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFG 141

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 56/242 (23%), Positives = 83/242 (34%), Gaps = 89/242 (36%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------- 101
           IG G +G VYK  +    +VVA+K +   E ED   ++  Q E  VLS            
Sbjct: 12  IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDE--IEDIQQEITVLSQCDSPYITRYYG 69

Query: 102 ---------------------------------------SVAHALSYLHHDCTLSIVHRD 122
                                                   +   L YLH +     +HRD
Sbjct: 70  SYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSE---RKIHRD 126

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY 182
           I + N+LL    +  +ADFG A               LTDT  + N  +G   + A    
Sbjct: 127 IKAANVLLSEQGDVKLADFGVAG-------------QLTDTQIKRNTFVGTPFWMAPEVI 173

Query: 183 FQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT------HPGELLSSLSSSSGP 236
            Q           AY      K D++S G+ A+++  G       HP  +L  +  +S P
Sbjct: 174 KQS----------AYDF----KADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPP 219

Query: 237 KI 238
            +
Sbjct: 220 TL 221

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRPYEWALTDTLP 165
           LSYLH +    I+HRD+   N+L+DS  +   +ADFG A  L             T    
Sbjct: 116 LSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAK---------GTGAGE 163

Query: 166 QVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              +++G I++ A           P   E+         CDV+S G V +++     P
Sbjct: 164 FQGQLLGTIAFMA-----------P---EVLRGEQYGRSCDVWSVGCVIIEMATAKPP 207

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           ++E    S  +  AL +LH    L IV+RDI   NILLDS     + DFG ++    +  
Sbjct: 104 EDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK 160

Query: 153 NRPYEWALT 161
            R Y +  T
Sbjct: 161 ERTYSFCGT 169

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 52/151 (34%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVK----------- 90
           N  E+F +   IG+G YG VYKA  +  G++ A+K +     ED A V+           
Sbjct: 6   NPQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKH 65

Query: 91  --------------------------SFQNEAHV-----------LSTSVAHALSYLHHD 113
                                     S Q+  HV           +S      L YLH  
Sbjct: 66  SNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSK 125

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
                +HRDI   NILL  N    +ADFG +
Sbjct: 126 ---GKMHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 91  SFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           S+ +  HV +  +A  + YL    +L+ VHRD+++ N L+  NL   +ADFG +R L+
Sbjct: 136 SYSSLLHV-ALQIASGMKYL---SSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLY 189

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL 146
            L+YLH       +HRDI + NILL       +ADFG+A L
Sbjct: 127 GLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASL 164

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL------HVDSSNRP 155
           +   AL+YL     L I+HRD+  +NILLD N    + DFG +  L        D+  RP
Sbjct: 115 ATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRP 172

Query: 156 Y 156
           Y
Sbjct: 173 Y 173

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++YLH++C   +VHRDI  NN++L  N    + DFG AR L
Sbjct: 115 VAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++  VA  ++YL      + +HRD+++ N+L+  N    VADFG AR++
Sbjct: 108 MAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL 146
           L +LH +C   IVHRD+   NIL+ S  +  +ADFG AR+
Sbjct: 121 LDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARI 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++  +A  ++Y+     ++ +HRD+ + NIL+  NL   +ADFG ARL+
Sbjct: 107 MAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++  VA  ++Y+     ++ +HRD+ S NIL+   L   +ADFG ARL+
Sbjct: 107 MAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 43/146 (29%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG------TARLLHVDSSNRPYEWA 159
            L +LH++    I+HRD+  NNILL +     + DFG      + RL    S   P+  A
Sbjct: 140 GLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMA 196

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV-- 217
                P+V   I C                    E  Y      +CDV+S G+ A+++  
Sbjct: 197 -----PEV---IAC--------------------EQQYDYSYDARCDVWSLGITAIELGD 228

Query: 218 ----LMGTHPGELLSSLSSSSGPKIM 239
               L   HP + L  +  +  P ++
Sbjct: 229 GDPPLFDMHPVKTLFKIPRNPPPTLL 254

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 43/156 (27%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + +L    +   +HRD+++ N+L+  +    +ADFG AR +H       Y      
Sbjct: 141 VARGMEFL---ASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIH---HIDYYRKTTNG 194

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
            LP        + + A    F R              V T + DV+SFGV+  ++     
Sbjct: 195 RLP--------VKWMAPEALFDR--------------VYTHQSDVWSFGVLLWEIF---- 228

Query: 223 PGELLSSLSSSSGPKI---MLIDVLDQ--RLSPPVN 253
                 +L  S  P I    L  +L +  R+  P N
Sbjct: 229 ------TLGGSPYPGIPVEELFKLLKEGYRMEKPQN 258

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA-RLLHVDS 151
           ++ ++  AL YL       ++HRD+  +NILLD++    + DFG + RL  VDS
Sbjct: 119 MTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRL--VDS 168

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++ +  AL YLH   +  IV+RD+   NILLD      + DFG A+ L 
Sbjct: 107 ASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR 152

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 90  KSF-QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           +SF +  A   +  +A AL YLH   +L+I++RD+   NILLDS     + DFG
Sbjct: 91  RSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFG 141

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 80  QSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVA 139
            +E  D   + S+      ++T +A  + YL    +L+ VHRD+++ N L+  N    +A
Sbjct: 118 AAEKADVVTI-SYSTLIF-MATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIA 172

Query: 140 DFGTARLLH 148
           DFG +R L+
Sbjct: 173 DFGMSRNLY 181

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           A   +  +A AL YLH   +++IV+RD+   NILLDS     + DFG  +
Sbjct: 98  ARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           +A ++   +   L YLH      I+HRD+ + NI ++   +  + D G A+
Sbjct: 158 QALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQ 205

Length = 357

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 44/146 (30%)

Query: 77  KLHQSETEDSAFVKSFQNEAHVLSTS--VAHALSYLHHDCTLSIVHRDISSNNILLDSNL 134
              + + E     K       ++S S  VA  + +L    +   +HRD+++ NILL  N 
Sbjct: 154 SDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFL---ASRKCIHRDLAARNILLSENN 210

Query: 135 EAFVADFGTARLLHVD-------SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHN 187
              + DFG AR ++ D        +  P +W   +++                  F +  
Sbjct: 211 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESI------------------FDK-- 250

Query: 188 LMPFHVELAYTMVVTEKCDVYSFGVV 213
                       V T + DV+SFGV+
Sbjct: 251 ------------VYTTQSDVWSFGVL 264

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 40/157 (25%)

Query: 75  LKKLHQSETEDSAFVKSFQNEAHVLS-------TSVAHALSYLHHDCTLSIVHRDISSNN 127
           L+K    ET D AF K     + + S       + VA  + YL        +HRD+++ N
Sbjct: 94  LRKSRVLET-DPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARN 149

Query: 128 ILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHN 187
           +L+  NL + +ADFG +R   V                 V K +G +     W   +   
Sbjct: 150 VLVGENLASKIADFGLSRGEEV----------------YVKKTMGRLP--VRWMAIE--- 188

Query: 188 LMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGTHP 223
                  L Y+ V T K DV+SFGV+  +++ +G  P
Sbjct: 189 ------SLNYS-VYTTKSDVWSFGVLLWEIVSLGGTP 218

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
           E   ++      L+YLH      ++HRDI + NILL    +  +ADFG+A
Sbjct: 122 EIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSA 168

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 45 TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKL 78
             F I+  IG G +  VYKA  L DG+VVALKK+
Sbjct: 1  LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKV 35

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL 146
           L Y+H   +  +VHRD+  +NIL++ N +  + DFG AR+
Sbjct: 121 LKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARI 157

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL 146
            L Y+H   + +++HRD+  +N+LL++N +  + DFG AR+
Sbjct: 118 GLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARI 155

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           +A  ++YL        VHRD+++ N ++  +L   + DFG  R +
Sbjct: 128 IADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 34/115 (29%)

Query: 101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL 160
           T +A  + YL    + S +HRD+++ N +L+ N+   VADFG ++               
Sbjct: 119 TDIASGMEYL---SSKSFIHRDLAARNCMLNENMNVCVADFGLSK--------------- 160

Query: 161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGV 212
                   KI     Y   ++   R   MP     +E     V T K DV+SFGV
Sbjct: 161 --------KI-----YNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGV 202

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 52/151 (34%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVK----------- 90
           N   ++ +   +G+G YG VYKA  L  G++ A+K +     +D + ++           
Sbjct: 6   NPQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKH 65

Query: 91  --------------------------SFQNEAHV-----------LSTSVAHALSYLHHD 113
                                     S Q+  HV           +       L+YLH  
Sbjct: 66  CNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLH-- 123

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
            +   +HRDI   NILL  N +  +ADFG A
Sbjct: 124 -SKGKMHRDIKGANILLTDNGDVKLADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 54/263 (20%), Positives = 83/263 (31%), Gaps = 89/263 (33%)

Query: 54  IGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------ 100
           IG GG G VY A  P   + VALKK+ +  +E+    K F  EA + +            
Sbjct: 10  IGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYS 69

Query: 101 ----------------------------------------TSVAHALSYLHHDC------ 114
                                                   TSV   LS  H  C      
Sbjct: 70  ICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYV 129

Query: 115 -TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD-----SSNRPYEWALTDTLPQVN 168
            +  ++HRD+  +NILL    E  + D+G A    ++       +         ++    
Sbjct: 130 HSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG 189

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS 228
           KI+G   Y A               E    +  +E  D+Y+ GV+  ++L  + P     
Sbjct: 190 KIVGTPDYMA--------------PERLLGVPASESTDIYALGVILYQMLTLSFP----- 230

Query: 229 SLSSSSGPKIMLIDVLDQRLSPP 251
                 G KI         +  P
Sbjct: 231 -YRRKKGRKIS----YRDVILSP 248

Length = 932

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 22/76 (28%)

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT-------------DTL 164
           ++HRDI S NI L  N +  + DFG+ARLL       P  +A T             + +
Sbjct: 121 VLHRDIKSKNIFLTQNGKVKLGDFGSARLL-----TSPGAYACTYVGTPYYVPPEIWENM 175

Query: 165 PQVNK----IIGCISY 176
           P  NK     +GCI Y
Sbjct: 176 PYNNKSDIWSLGCILY 191

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            +  VA  + YL        +HRD+++ NIL+  N  A +ADFG +R
Sbjct: 129 FAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSR 172

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 32/126 (25%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
            +  VA  + YL        +HRD+++ NIL+  N  A +ADFG +R   V         
Sbjct: 117 FAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------- 164

Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
                   V K +G +     W   +          L Y+ V T   DV+S+GV+  +++
Sbjct: 165 -------YVKKTMGRLP--VRWMAIE---------SLNYS-VYTTNSDVWSYGVLLWEIV 205

Query: 219 -MGTHP 223
            +G  P
Sbjct: 206 SLGGTP 211

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 30/121 (24%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A AL +LH   +L I++RD+   NILLD      + DFG ++   +D   + Y +    
Sbjct: 107 LALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKAYSFC--- 159

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
                    G + Y A     +R +              T+  D +SFGV+  ++L G+ 
Sbjct: 160 ---------GTVEYMAPEVVNRRGH--------------TQSADWWSFGVLMFEMLTGSL 196

Query: 223 P 223
           P
Sbjct: 197 P 197

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 52/156 (33%)

Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD-------SS 152
           S  VA  + +L    +   +HRD+++ NILL  N    + DFG AR ++ D       S+
Sbjct: 180 SFQVARGMEFL---ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSA 236

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV 212
             P +W   +++                                +  V T + DV+SFGV
Sbjct: 237 RLPLKWMAPESI--------------------------------FDKVYTTQSDVWSFGV 264

Query: 213 VALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRL 248
           +  ++           SL +S  P + + +   QRL
Sbjct: 265 LLWEIF----------SLGASPYPGVQINEEFCQRL 290

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           +  +A+ + YL        +HRD+++ NILL S+ +  + DFG  R L
Sbjct: 103 AVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRAL 147

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 35/125 (28%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL      + +HRD+++ N +L  ++   VADFG ++ ++     R        
Sbjct: 122 IALGMEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQ------- 171

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVVALKVL- 218
                    G I+             MP     +E     V T K DV++FGV   ++  
Sbjct: 172 ---------GRIAK------------MPVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT 210

Query: 219 MGTHP 223
            G  P
Sbjct: 211 RGQTP 215

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 34/123 (27%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +   L YLH +     +HRDI + N+LL    +  +ADFG A               LTD
Sbjct: 110 ILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAG-------------QLTD 153

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV--ELAYTMVVTEKCDVYSFGVVALKVLMG 220
           T  + N  +G                 PF +  E+        K D++S G+ A+++  G
Sbjct: 154 TQIKRNTFVG----------------TPFWMAPEVIQQSAYDSKADIWSLGITAIELAKG 197

Query: 221 THP 223
             P
Sbjct: 198 EPP 200

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 49/147 (33%)

Query: 47  EFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLST---- 101
           +F I   +G GGYG V+ A+  D G++VALK++ +S       V+    E  +L+T    
Sbjct: 2   DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSE 61

Query: 102 -------------SVAHALSY---------------LHHDCT----------------LS 117
                         +  A+ Y               L  D                  L 
Sbjct: 62  WLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELG 121

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTA 144
            +HRD+   N L+D++    + DFG +
Sbjct: 122 YIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           +S +V   L+YL       I+HRD+  +NIL++S  E  + DFG +  L  DS
Sbjct: 104 ISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI-DS 153

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            +L ++H +    I HRDI   NIL+  ++   +ADFG+ R ++   S  PY
Sbjct: 111 KSLDHMHRN---GIFHRDIKPENILIKDDILK-LADFGSCRGIY---SKPPY 155

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           AL Y+H   T ++ HRD+   NIL +++ +  + DFG AR+   D+
Sbjct: 115 ALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDT 157

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 61  SVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVH 120
           S++   +P G +    K + + TE         N     +  +   +SYLH +    IVH
Sbjct: 82  SIFMEHMPGGSIKDQLKSYGALTE---------NVTRKYTRQILEGVSYLHSNM---IVH 129

Query: 121 RDISSNNILLDSNLEAFVADFGTARLLH 148
           RDI   NIL DS     + DFG ++ L 
Sbjct: 130 RDIKGANILRDSVGNVKLGDFGASKRLQ 157

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.98
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.97
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.97
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.97
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.97
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.97
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.96
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.96
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.96
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.96
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.96
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.95
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.95
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.95
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.95
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.95
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.95
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.95
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.95
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.95
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.95
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.95
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.95
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.95
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.95
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.95
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.95
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.95
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.95
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.95
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.95
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.95
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.94
PTZ00284	467	protein kinase; Provisional	99.94
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.94
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.94
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.94
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.94
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.94
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.94
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.94
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.94
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.94
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.94
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.94
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.94
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.94
PTZ00283	496	serine/threonine protein kinase; Provisional	99.94
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.94
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.94
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.94
KOG0198	313	consensus MEKK and related serine/threonine protei	99.94
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.94
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.94
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.94
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.94
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.94
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.94
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.94
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.94
PHA03212	391	serine/threonine kinase US3; Provisional	99.94
KOG0578	550	consensus p21-activated serine/threonine protein k	99.94
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.94
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.94
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.94
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.94
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.94
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.94
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.94
PTZ00036	440	glycogen synthase kinase; Provisional	99.93
KOG0610	459	consensus Putative serine/threonine protein kinase	99.93
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.93
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.93
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.93
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.93
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.93
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.93
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.93
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.93
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.93
KOG3653	534	consensus Transforming growth factor beta/activin	99.93
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.93
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.93
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.93
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.93
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.93
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.93
KOG0589	426	consensus Serine/threonine protein kinase [General	99.93
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.93
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.93
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.93
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.93
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.93
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.92
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.92
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.92
PHA02988	283	hypothetical protein; Provisional	99.92
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.92
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.92
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.92
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.92
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.92
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.92
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.92
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.92
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.92
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.92
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.92
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.92
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.92
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.92
PHA03207	392	serine/threonine kinase US3; Provisional	99.92
PTZ00267	478	NIMA-related protein kinase; Provisional	99.92
PHA03211	461	serine/threonine kinase US3; Provisional	99.92
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.92
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.92
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.91
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.91
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.91
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.91
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.91
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.91
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.91
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.91
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.91
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.91
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.91
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.91
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.91
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.91
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.91
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.91
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.91
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.91
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.91
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.91
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.91
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.91
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.91
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.91
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.91
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.91
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.91
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.91
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.91
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.91
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.91
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.91
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.91
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.91
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.91
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.91
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.91
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.91
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.91
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.9
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.9
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.9
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.9
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.9
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.9
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.9
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.9
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.9
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.9
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.9
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.9
KOG0586	596	consensus Serine/threonine protein kinase [General	99.9
PHA03209	357	serine/threonine kinase US3; Provisional	99.9
PHA03210	501	serine/threonine kinase US3; Provisional	99.9
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.9
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.9
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.9
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.9
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.9
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.9
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.9
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.9
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.9
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.9
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.9
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.9
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.9
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.9
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.9
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.9
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.9
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.9
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.9
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.9
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.9
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.9
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.9
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.9
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.9
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.9
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.9
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.9
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.9
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.9
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.9
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.9
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.9
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.9
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.9
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.9
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.9
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.9
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.9
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.9
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.9
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.9
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.89
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.89
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.89
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.89
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.89
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.89
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.89
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.89
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.89
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.89
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.89
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.89
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.89
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.89
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.89
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.89
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.89
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.89
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.89
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.89
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.89
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.89
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.89
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.89
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.89
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.89
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.89
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.89
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.89
PLN00009	294	cyclin-dependent kinase A; Provisional	99.89
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.89
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.89
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.89
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.89
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.89
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.89
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.89
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.89
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.89
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.89
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.89
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.89
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.89
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.89
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.89
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.89
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.89
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.89
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.89
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.89
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.89
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.89
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.89
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.89
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.89
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.89
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.89
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.89
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.89
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.89
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.89
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.89
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.89
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.89
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.88
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.88
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.88
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.88
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.88
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.88
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.88
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.88
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.88
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.88
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.88
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.88
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.88
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.88
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.88
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.88
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.88
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.88
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.88
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.88
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.88
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.88
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.88
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.88
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.88
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.88
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.88
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.88
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.87
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.87
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.87
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.87
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.87
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.87
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.87
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.87
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.87
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.87
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.87
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.87
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.87
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.87
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.87
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.87
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.87
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.87
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.87
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.87
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.87
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.87
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.86
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.86
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.86
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.86
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.86
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.86
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.86
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.86
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.86
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.85
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.85
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.85
KOG0584	632	consensus Serine/threonine protein kinase [General	99.85
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.85
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.85
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.85
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.85
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.85
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.85
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.84
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.84
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.83
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.83
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.83
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.83
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.83
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.83
KOG1152	772	consensus Signal transduction serine/threonine kin	99.83
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.82
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.82
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.81
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.8
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.78
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.77
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.77
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.75
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.73
PRK09188	365	serine/threonine protein kinase; Provisional	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.72
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.71
PLN00181	793	protein SPA1-RELATED; Provisional	99.71
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.71
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.69
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.68
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.66
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.63
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.62
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.6
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.57
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.56
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.55
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.47
PRK12274	218	serine/threonine protein kinase; Provisional	99.45
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.44
smart00090	237	RIO RIO-like kinase.	99.43
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.42
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.37
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.26
PRK14879	211	serine/threonine protein kinase; Provisional	99.16
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.15
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.13
PRK10345	210	hypothetical protein; Provisional	99.1
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.06
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.95
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.94
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.91
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.85
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.81
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.74
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.58
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.31
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.25
KOG3087	229	consensus Serine/threonine protein kinase [General	98.22
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.15
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.09
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.03
KOG1243	690	consensus Protein kinase [General function predict	98.01
COG4248	637	Uncharacterized protein with protein kinase and he	97.94
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.88
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.86
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.83
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.68
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.65
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.36
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.28
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.27
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.23
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.19
PRK09902	216	hypothetical protein; Provisional	97.09
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.97
KOG1235	538	consensus Predicted unusual protein kinase [Genera	96.5
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.4
PF01636	239	APH: Phosphotransferase enzyme family This family	95.89
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	95.65
PRK05231	319	homoserine kinase; Provisional	95.35
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	94.84
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	94.56
PRK09550	401	mtnK methylthioribose kinase; Reviewed	93.5
KOG2268	465	consensus Serine/threonine protein kinase [Signal	93.08
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	92.9
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	92.13
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	91.78
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	91.24
KOG2270	520	consensus Serine/threonine protein kinase involved	91.02
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	90.88
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	90.85
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	90.64
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	90.28
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	90.03
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	89.44
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	89.32
PRK10271	188	thiK thiamine kinase; Provisional	89.04
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	88.9
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	88.71
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	87.07
KOG0576	829	consensus Mitogen-activated protein kinase kinase	87.0
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	86.52
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	85.43
COG4499	434	Predicted membrane protein [Function unknown]	85.27
PLN02236	344	choline kinase	85.13
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	84.76
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	84.2
KOG1236	565	consensus Predicted unusual protein kinase [Genera	83.86
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	82.54
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	82.48
PRK06148	1013	hypothetical protein; Provisional	81.98

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-35  Score=247.55  Aligned_cols=156  Identities=28%  Similarity=0.442  Sum_probs=132.4

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      ....++|++++.||.|+||+||.++. .+++.||+|++++........++....|..+|..                   
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kL  100 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKL  100 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeE
Confidence            34578899999999999999999954 5799999999998766655556666777766433                   


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      +|+.||.|||+.   +|+||||||+|||+|.+|+++|+|||+++..-.
T Consensus       101 ylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~  177 (357)
T KOG0598|consen  101 YLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK  177 (357)
T ss_pred             EEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhccc
Confidence                                            799999999999   999999999999999999999999999996543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             ...+||+-|||              ||++.+.+|+..+|+||+|+++|||++|.+||.+.
T Consensus       178 ~~~~t-------------~tfcGT~eYmA--------------PEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~  228 (357)
T KOG0598|consen  178 DGDAT-------------RTFCGTPEYMA--------------PEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE  228 (357)
T ss_pred             CCCcc-------------ccccCCccccC--------------hHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc
Confidence            32221             23689999999              77788888999999999999999999999999875

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=252.50  Aligned_cols=171  Identities=25%  Similarity=0.412  Sum_probs=132.6

Q ss_pred             HhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .....||.+++.||+|+|++|++| +..++++||||++.+.-.-.+..++-...|..+                      
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            566889999999999999999999 456899999999987644444334444444333                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.+|+.||+|||++   ||+||||||||||+|.+++++|+|||.++.++
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccCC
Confidence                                          455899999999999   99999999999999999999999999999887


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .........-.............||..|.+              ||++.....+..+|+|+|||++|+|+.|++||.+.+
T Consensus       226 ~~~~~~~~~~~~~~a~s~~~SFVGTAeYVS--------------PElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N  291 (604)
T KOG0592|consen  226 PSQKSQENPVDPNQASSRRSSFVGTAEYVS--------------PELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN  291 (604)
T ss_pred             hhhccccCccCcccccCcccceeeeecccC--------------HHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc
Confidence            554332110000001111234789999999              666666777999999999999999999999999764


Q ss_pred             c
Q 039073          229 S  229 (257)
Q Consensus       229 ~  229 (257)
                      .
T Consensus       292 e  292 (604)
T KOG0592|consen  292 E  292 (604)
T ss_pred             H
Confidence            3

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-33  Score=231.55  Aligned_cols=166  Identities=26%  Similarity=0.373  Sum_probs=140.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|+..+.||.|+||+|.+++.+ +|..+|+|++.+...-+..+++...+|..+|                       
T Consensus        42 ~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lym  121 (355)
T KOG0616|consen   42 SLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYM  121 (355)
T ss_pred             chhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEE
Confidence            3567999999999999999999654 6889999999988776666677777777663                       


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                  +.||+.|++|||++   +|++|||||||||+|++|++|++|||+++..... 
T Consensus       122 vmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-  197 (355)
T KOG0616|consen  122 VMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-  197 (355)
T ss_pred             EEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecCc-
Confidence                                        34899999999999   9999999999999999999999999999876422 


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLS  231 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~~  231 (257)
                                     .-.+|||+.|+|              ||.+.+.+++..+|.||||+++|||+.|.+||..-+.  
T Consensus       198 ---------------T~TlCGTPeYLA--------------PEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~--  246 (355)
T KOG0616|consen  198 ---------------TWTLCGTPEYLA--------------PEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP--  246 (355)
T ss_pred             ---------------EEEecCCccccC--------------hHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh--
Confidence                           123789999999              8999999999999999999999999999999986433  


Q ss_pred             CCCCCcchhhhhhcccCC
Q 039073          232 SSSGPKIMLIDVLDQRLS  249 (257)
Q Consensus       232 ~~~~~~~~~~~i~~~~l~  249 (257)
                           ...+.+|+..++.
T Consensus       247 -----~~iY~KI~~~~v~  259 (355)
T KOG0616|consen  247 -----IQIYEKILEGKVK  259 (355)
T ss_pred             -----HHHHHHHHhCccc
Confidence                 3355666665553

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=245.72  Aligned_cols=188  Identities=22%  Similarity=0.319  Sum_probs=144.1

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      ....++|++++.||+|+||.||+|+. .+|..+|+|+++++..-....++..+.|..+|+.                   
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            44688999999999999999999954 5799999999999877666678888888877544                   


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      +++-|++.+|.+   |++||||||+|+|||..|++||+|||++.....
T Consensus       217 YLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~  293 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDK  293 (550)
T ss_pred             EEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchhhh
Confidence                                            688899999999   999999999999999999999999999865422


Q ss_pred             CCC-----------------CCCcccc---ccC--------------CCcccccccccccchhhhHhhhcCCCCchhhhh
Q 039073          150 DSS-----------------NRPYEWA---LTD--------------TLPQVNKIIGCISYYALWFYFQRHNLMPFHVEL  195 (257)
Q Consensus       150 ~~~-----------------~~~~~~~---~~~--------------~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~  195 (257)
                      ...                 .......   ...              ...+.....||+.|+|              ||+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiA--------------PEV  359 (550)
T KOG0605|consen  294 KHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIA--------------PEV  359 (550)
T ss_pred             hhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccc--------------hHH
Confidence            100                 0000000   000              1122345689999999              888


Q ss_pred             hhcCCCCCccchhhHHHHHHHHHhCCCCCcccccccCCCCCcchhhhhhcccCCCCCC
Q 039073          196 AYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVN  253 (257)
Q Consensus       196 ~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  253 (257)
                      +.+..|+..+|+||+||++||||.|.+||.+.+       +...+.+|++-+..=.+|
T Consensus       360 ll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~t-------p~~T~rkI~nwr~~l~fP  410 (550)
T KOG0605|consen  360 LLGKGYGKECDWWSLGCIMYEMLVGYPPFCSET-------PQETYRKIVNWRETLKFP  410 (550)
T ss_pred             HhcCCCCccccHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhhccCC
Confidence            888889999999999999999999999998642       333455555555433333

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.98  E-value=1.8e-32  Score=233.38  Aligned_cols=152  Identities=30%  Similarity=0.512  Sum_probs=127.3

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH--------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--------------------  101 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--------------------  101 (257)
                      ....+|++.+.||.|+||+||+|++ .++..||||.+.+.... ....+....|+.+|..                    
T Consensus         7 ~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~-~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~   85 (429)
T KOG0595|consen    7 RVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLN-KKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIY   85 (429)
T ss_pred             cccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccC-HHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEE
Confidence            4467899999999999999999955 47899999999876543 3345667777777443                    


Q ss_pred             -------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC------CCeEEeeccCc
Q 039073          102 -------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSN------LEAFVADFGTA  144 (257)
Q Consensus       102 -------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~------~~~~l~dfg~~  144 (257)
                                                     |++.|+++||++   +|+||||||.||||+.+      -.+||+|||++
T Consensus        86 lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfA  162 (429)
T KOG0595|consen   86 LVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFA  162 (429)
T ss_pred             EEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccchh
Confidence                                           899999999999   99999999999999764      35799999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +......-              ....+|++.|||              ||++....|+.|+|+||+|+++|++++|++||
T Consensus       163 R~L~~~~~--------------a~tlcGSplYMA--------------PEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf  214 (429)
T KOG0595|consen  163 RFLQPGSM--------------AETLCGSPLYMA--------------PEVIMSQQYDAKADLWSIGTILYQCLTGKPPF  214 (429)
T ss_pred             hhCCchhH--------------HHHhhCCccccC--------------HHHHHhccccchhhHHHHHHHHHHHHhCCCCc
Confidence            98864322              234799999999              77777777899999999999999999999999


Q ss_pred             cc
Q 039073          225 EL  226 (257)
Q Consensus       225 ~~  226 (257)
                      +.
T Consensus       215 ~a  216 (429)
T KOG0595|consen  215 DA  216 (429)
T ss_pred             cc
Confidence            93

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.97  E-value=5.7e-32  Score=222.73  Aligned_cols=158  Identities=27%  Similarity=0.383  Sum_probs=126.7

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------------------  101 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----------------------  101 (257)
                      ++.|+.+..+|+|+||+||+++++ +|+.||||++..+.. +....+-..+|++.|..                      
T Consensus         1 MekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esed-d~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLV   79 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESED-DPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLV   79 (396)
T ss_pred             CcHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCc-cHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEE
Confidence            467999999999999999999654 799999999986543 23334445666665332                      


Q ss_pred             -----------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          102 -----------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       102 -----------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                   |++.|+.|+|++   +++|||||||||+++.+|.+||+|||+|+....+..
T Consensus        80 FE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd  156 (396)
T KOG0593|consen   80 FEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGD  156 (396)
T ss_pred             eeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCcc
Confidence                                         899999999999   999999999999999999999999999997753221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccccccC
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSS  232 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~~~  232 (257)
                      .             ...-..|..|.|||++.+.             ..|+.++||||+||++.||++|.+.|.+-+++++
T Consensus       157 ~-------------YTDYVATRWYRaPELLvGD-------------tqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQ  210 (396)
T KOG0593|consen  157 N-------------YTDYVATRWYRAPELLVGD-------------TQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQ  210 (396)
T ss_pred             h-------------hhhhhhhhhccChhhhccc-------------CcCCCcccchhhhHHHHHHhcCCcCCCCcchHHH
Confidence            1             1224568888895555433             4478999999999999999999999999887765

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-31  Score=238.25  Aligned_cols=157  Identities=25%  Similarity=0.371  Sum_probs=134.6

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      -....++|.+++.||+|+||+|++++.+ +++.+|||++++...-....++..+.|.++                     
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE  442 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC
Confidence            3556789999999999999999999664 688999999998866555557777777776                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++..|+.||.|||++   +|++||||-+|||+|.+|++||+|||+++..-
T Consensus       443 ~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             eEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccccC
Confidence                                          344799999999999   99999999999999999999999999999754


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......             ...+||+-|+|              ||++.+..|+..+|+|||||++|||+.|+.||.+.
T Consensus       520 ~~g~~T-------------sTfCGTpey~a--------------PEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd  571 (694)
T KOG0694|consen  520 GQGDRT-------------STFCGTPEFLA--------------PEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD  571 (694)
T ss_pred             CCCCcc-------------ccccCChhhcC--------------hhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            322221             33799999999              88888889999999999999999999999999864

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.4e-32  Score=220.93  Aligned_cols=155  Identities=28%  Similarity=0.379  Sum_probs=125.0

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ...+|+++++||.|+||.||++ ...+|..+|.|.++-... +....+....|+.+|                       
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~m-d~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evl   95 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMM-DAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVL   95 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhc-cHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhh
Confidence            3457899999999999999999 567899999999974332 222233344444332                       


Q ss_pred             ----------------------------------HHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073          100 ----------------------------------STSVAHALSYLHHDCTLS--IVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus       100 ----------------------------------~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                        ..|++.||..||.. .++  |+||||||.||+++.+|.+||+|||+
T Consensus        96 nivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL  174 (375)
T KOG0591|consen   96 NIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGL  174 (375)
T ss_pred             HHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchh
Confidence                                              22899999999983 234  99999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      ++.+....+.             .....||+.||+              ||.+...+|+.++||||+||++|||+.-++|
T Consensus       175 ~r~l~s~~tf-------------A~S~VGTPyYMS--------------PE~i~~~~Y~~kSDiWslGCllyEMcaL~~P  227 (375)
T KOG0591|consen  175 GRFLSSKTTF-------------AHSLVGTPYYMS--------------PERIHESGYNFKSDIWSLGCLLYEMCALQSP  227 (375)
T ss_pred             HhHhcchhHH-------------HHhhcCCCcccC--------------HHHHhcCCCCcchhHHHHHHHHHHHHhcCCC
Confidence            9987654332             234689999999              7788888899999999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |.+-
T Consensus       228 F~g~  231 (375)
T KOG0591|consen  228 FYGD  231 (375)
T ss_pred             cccc
Confidence            9874

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.7e-31  Score=235.07  Aligned_cols=151  Identities=27%  Similarity=0.470  Sum_probs=130.1

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .+|+..+.||+|+|+.+|.++. .+|..||+|++.+.........+...+|+++                          
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5699999999999999999977 7899999999987655555556666666665                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +.+||+.|+.|||++   +|+|||||-.|++++++.++||+|||+|.....+..+
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Er  174 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGER  174 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCcccc
Confidence                                     445999999999999   9999999999999999999999999999988765444


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .             ..+|||+.|.|              ||++.....+..+||||+||++|-|+.|++||+.
T Consensus       175 k-------------~TlCGTPNYIA--------------PEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFet  220 (592)
T KOG0575|consen  175 K-------------KTLCGTPNYIA--------------PEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFET  220 (592)
T ss_pred             c-------------ceecCCCcccC--------------hhHhccCCCCCchhhhhhhhHHHhhhhCCCCccc
Confidence            3             23799999999              5666666679999999999999999999999984

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.97  E-value=4.2e-31  Score=214.04  Aligned_cols=157  Identities=25%  Similarity=0.370  Sum_probs=126.2

Q ss_pred             cccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|..++.+|+|.||+||+| +..+|+.||||+++.....+. .-....+|+..                          
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdG-i~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDG-INRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccC-ccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            57999999999999999999 557899999999987643321 11223344443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|++|||.+   .|+||||||.|+|++++|.+|++|||+++.+..+...
T Consensus        81 Efm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   81 EFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             EeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence                                     233799999999999   9999999999999999999999999999987654433


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccccccC
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSS  232 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~~~  232 (257)
                      .+.             ..-|..|.|||++++++.|             +..+|+||.||++.||+-|.+-|.|.+++++
T Consensus       158 ~~~-------------~V~TRWYRAPELLfGsr~Y-------------g~~VDmWavGCI~AELllr~P~fpG~sDidQ  210 (318)
T KOG0659|consen  158 QTH-------------QVVTRWYRAPELLFGSRQY-------------GTGVDMWAVGCIFAELLLRVPFFPGDSDIDQ  210 (318)
T ss_pred             ccc-------------ceeeeeccChHHhccchhc-------------CCcchhhhHHHHHHHHHccCCCCCCCchHHH
Confidence            221             2457889998888888654             8899999999999999999999998776553

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.6e-31  Score=231.43  Aligned_cols=160  Identities=28%  Similarity=0.433  Sum_probs=130.0

Q ss_pred             hhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHH---------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS---------------------  100 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------------------  100 (257)
                      ...+.|+.+++||+|+||.||+| +..+|++||+|++...... +.+..-..+|+.+|.                     
T Consensus       114 r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~-~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~s  192 (560)
T KOG0600|consen  114 RRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEK-EGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGS  192 (560)
T ss_pred             cchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCC-CcchHHHHHHHHHHHhcCCCcccceeeEEEecCCce
Confidence            34677999999999999999999 5578999999999876533 234555667777643                     


Q ss_pred             --------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          101 --------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       101 --------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                      .|++.||+|||++   ||+|||||..|||||++|.+||+|||+|+++.
T Consensus       193 iYlVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~  269 (560)
T KOG0600|consen  193 IYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYT  269 (560)
T ss_pred             EEEEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeecc
Confidence                                            3899999999999   99999999999999999999999999999876


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......            +....-|..|.+||++.+...             |+..+|+||.||++.||+.|++.|++-+
T Consensus       270 ~~~~~~------------~T~rVvTLWYRpPELLLG~t~-------------Yg~aVDlWS~GCIl~El~~gkPI~~G~t  324 (560)
T KOG0600|consen  270 PSGSAP------------YTSRVVTLWYRPPELLLGATS-------------YGTAVDLWSVGCILAELFLGKPILQGRT  324 (560)
T ss_pred             CCCCcc------------cccceEEeeccChHHhcCCcc-------------cccceeehhhhHHHHHHHcCCCCcCCcc
Confidence            554321            122445888999666655544             5889999999999999999999999866


Q ss_pred             ccc
Q 039073          229 SLS  231 (257)
Q Consensus       229 ~~~  231 (257)
                      ++.
T Consensus       325 Eve  327 (560)
T KOG0600|consen  325 EVE  327 (560)
T ss_pred             HHH
Confidence            433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-31  Score=229.47  Aligned_cols=191  Identities=39%  Similarity=0.584  Sum_probs=152.0

Q ss_pred             CCCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------
Q 039073           32 YDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------   99 (257)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------   99 (257)
                      ....|+++++..+|++|.-...||+|+||.||+|...+|+.||||++.......   .++|.+|+.++            
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~---~~eF~~Ei~~ls~l~H~Nlv~Ll  137 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG---EREFLNEVEILSRLRHPNLVKLL  137 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc---hhHHHHHHHHHhcCCCcCcccEE
Confidence            456799999999999999999999999999999999988999999887654431   24477777663            


Q ss_pred             ------------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073          100 ------------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus       100 ------------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                                +.++|+||+|||+.+.+.|+|||||+.||++|.++.+|
T Consensus       138 GyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aK  217 (361)
T KOG1187|consen  138 GYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAK  217 (361)
T ss_pred             EEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEE
Confidence                                                      33799999999999888899999999999999999999


Q ss_pred             EeeccCcccccc-CCCCCCccccccCCCcccccc-cccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          138 VADFGTARLLHV-DSSNRPYEWALTDTLPQVNKI-IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       138 l~dfg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      |+|||+++..+. ....              ... .||.+|++              ||....+..+.++||||||+++.
T Consensus       218 lsDFGLa~~~~~~~~~~--------------~~~~~gt~gY~~--------------PEy~~~g~lt~KsDVySFGVvll  269 (361)
T KOG1187|consen  218 LSDFGLAKLGPEGDTSV--------------STTVMGTFGYLA--------------PEYASTGKLTEKSDVYSFGVVLL  269 (361)
T ss_pred             ccCccCcccCCccccce--------------eeecCCCCccCC--------------hhhhccCCcCcccccccchHHHH
Confidence            999999976653 2211              111 68999999              77777777899999999999999


Q ss_pred             HHHhCCCCCccccccc--------CCCCCcchhhhhhcccCC-CCCC
Q 039073          216 KVLMGTHPGELLSSLS--------SSSGPKIMLIDVLDQRLS-PPVN  253 (257)
Q Consensus       216 ell~G~~Pf~~~~~~~--------~~~~~~~~~~~i~~~~l~-~~~~  253 (257)
                      |+++|+.|.+......        ........+.+|+|++|. ...+
T Consensus       270 Elitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~  316 (361)
T KOG1187|consen  270 ELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYP  316 (361)
T ss_pred             HHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCC
Confidence            9999999888532110        111122267889999987 4444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.97  E-value=7.9e-31  Score=221.30  Aligned_cols=148  Identities=31%  Similarity=0.503  Sum_probs=124.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++.+....||+|+.|+||++.+ ++++.+|+|++...  .+++..+.+.+|+++                          
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~--~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~  156 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN--IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISIC  156 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc--CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEee
Confidence            4677889999999999999955 57999999999542  233445566677666                          


Q ss_pred             --------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                ++.+|++||.|||+ +   +|+||||||+|+|+++.|.+||+|||+++......
T Consensus       157 mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~  233 (364)
T KOG0581|consen  157 MEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSI  233 (364)
T ss_pred             hhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhhh
Confidence                                      44589999999996 6   99999999999999999999999999998765431


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     .+...||..|||              ||.+.+..|+.++||||||+.++|+++|+.||...
T Consensus       234 ---------------a~tfvGT~~YMs--------------PERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  234 ---------------ANTFVGTSAYMS--------------PERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             ---------------cccccccccccC--------------hhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence                           134679999999              77888888999999999999999999999999764

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-31  Score=232.50  Aligned_cols=169  Identities=30%  Similarity=0.451  Sum_probs=139.7

Q ss_pred             cccCCCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------
Q 039073           29 VWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------   98 (257)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------   98 (257)
                      ....+...+.++|....+...+...||+|+||+||+|++- | .||||++.......+ ..+.|+.|+.+          
T Consensus       375 ~~~r~~s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~-qlqaFKnEVa~lkkTRH~NIl  451 (678)
T KOG0193|consen  375 GKNRQASDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPE-QLQAFKNEVAVLKKTRHENIL  451 (678)
T ss_pred             cccccCCccccccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHH-HHHHHHHHHHHHhhcchhhhe
Confidence            4445566778999999999999999999999999999874 3 399999987665554 68899999876          


Q ss_pred             -----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           99 -----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        99 -----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                               +++||++|+.|||..   +|+|||||..||++.++++++
T Consensus       452 LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVk  528 (678)
T KOG0193|consen  452 LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVK  528 (678)
T ss_pred             eeehhhcCCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEE
Confidence                                                     455999999999999   999999999999999999999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      |+|||++..-..-.           ..+.+....|...|||||+.+...           ..+|+..+||||||+++|||
T Consensus       529 IgDFGLatvk~~w~-----------g~~q~~qp~gsilwmAPEvIRmqd-----------~nPfS~qSDVYaFGiV~YEL  586 (678)
T KOG0193|consen  529 IGDFGLATVKTRWS-----------GEQQLEQPHGSLLWMAPEVIRMQD-----------DNPFSFQSDVYAFGIVWYEL  586 (678)
T ss_pred             Eecccceeeeeeec-----------cccccCCCccchhhhcHHHHhhcc-----------cCCCCcccchhhhhHHHHHH
Confidence            99999987543221           112234456888999988876332           34589999999999999999


Q ss_pred             HhCCCCCc
Q 039073          218 LMGTHPGE  225 (257)
Q Consensus       218 l~G~~Pf~  225 (257)
                      ++|..||.
T Consensus       587 ltg~lPys  594 (678)
T KOG0193|consen  587 LTGELPYS  594 (678)
T ss_pred             HhCcCCcC
Confidence            99999998

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2e-31  Score=227.13  Aligned_cols=155  Identities=30%  Similarity=0.431  Sum_probs=122.5

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHH----HHHHHHHHHHHHH------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSA----FVKSFQNEAHVLS------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~----~~~~~~~e~~~l~------------------  100 (257)
                      ..+.|.+.+.||.|+||.|-+| +.++|+.||||++.++......    -....++|+++|.                  
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            4667899999999999999999 6678999999999876433211    1234567777743                  


Q ss_pred             ---------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC---CCeEEeeccCc
Q 039073          101 ---------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSN---LEAFVADFGTA  144 (257)
Q Consensus       101 ---------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~---~~~~l~dfg~~  144 (257)
                                                       .|++.|+.|||++   ||+||||||+|||+..+   ..+||+|||+|
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlA  326 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLA  326 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEecccchh
Confidence                                             4999999999999   99999999999999766   67899999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +.......              +...|||+.|.|||++..-..-           .+..++|+||+||++|-+++|.+||
T Consensus       327 K~~g~~sf--------------m~TlCGTpsYvAPEVl~~kg~~-----------~~~~kVDiWSlGcvLfvcLsG~pPF  381 (475)
T KOG0615|consen  327 KVSGEGSF--------------MKTLCGTPSYVAPEVLASKGVE-----------YYPSKVDIWSLGCVLFVCLSGYPPF  381 (475)
T ss_pred             hcccccee--------------hhhhcCCccccChhheecCCee-----------cccchheeeeccceEEEEeccCCCc
Confidence            98752221              3457999999996555333211           1245889999999999999999999


Q ss_pred             cc
Q 039073          225 EL  226 (257)
Q Consensus       225 ~~  226 (257)
                      ..
T Consensus       382 S~  383 (475)
T KOG0615|consen  382 SE  383 (475)
T ss_pred             cc
Confidence            85

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=228.69  Aligned_cols=152  Identities=31%  Similarity=0.495  Sum_probs=129.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      +++|.+.+.||+|+||+||+|+. .+.+.||+|.+.+...... ..+...+|++++                        
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k-~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vV   79 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEK-ELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVV   79 (808)
T ss_pred             CcchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchH-HHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEE
Confidence            46899999999999999999955 4788999999988765443 356777777763                        


Q ss_pred             --------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          100 --------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       100 --------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                +.+++.||.|||+.   +|+|||+||.||+++..+.+|++|||+++.+......
T Consensus        80 te~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~v  156 (808)
T KOG0597|consen   80 TEYAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSV  156 (808)
T ss_pred             ehhhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccCcee
Confidence                                      33799999999999   9999999999999999999999999999987543322


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   ...+.||+.|||              ||...+.+|+..+|+||+||++||+++|++||...
T Consensus       157 -------------ltsikGtPlYmA--------------PElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~  203 (808)
T KOG0597|consen  157 -------------LTSIKGTPLYMA--------------PELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR  203 (808)
T ss_pred             -------------eeeccCcccccC--------------HHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH
Confidence                         245789999999              77778888999999999999999999999999853

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-31  Score=227.76  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=127.7

Q ss_pred             HhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ...+++|.+.++||+|+||.||+|+ ..+|..||||++++.....++.+.  .+|+..                      
T Consensus         6 ~~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~n--LREvksL~kln~hpniikL~Evi~d~~~   83 (538)
T KOG0661|consen    6 VIFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMN--LREVKSLRKLNPHPNIIKLKEVIRDNDR   83 (538)
T ss_pred             hhHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHH--HHHHHHHHhcCCCCcchhhHHHhhccCc
Confidence            3457899999999999999999995 457999999999876544433221  133322                      


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..||++||+++|.+   |+.|||+||||||+.....+||+|||+|+..
T Consensus        84 ~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   84 ILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             eEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEeccccccccc
Confidence                                           233999999999999   9999999999999998889999999999977


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              ...-..|..|.|||++..+.+             |+.++|+||+||+++|+.+-++.|.|.
T Consensus       161 ~SkpP--------------YTeYVSTRWYRAPEvLLrs~~-------------Ys~pvD~wA~GcI~aEl~sLrPLFPG~  213 (538)
T KOG0661|consen  161 RSKPP--------------YTEYVSTRWYRAPEVLLRSGY-------------YSSPVDMWAVGCIMAELYSLRPLFPGA  213 (538)
T ss_pred             ccCCC--------------cchhhhcccccchHHhhhccc-------------cCCchHHHHHHHHHHHHHHhcccCCCC
Confidence            54332              233567889999666544443             588999999999999999999999998


Q ss_pred             ccccCC
Q 039073          228 SSLSSS  233 (257)
Q Consensus       228 ~~~~~~  233 (257)
                      +++++.
T Consensus       214 sE~Dqi  219 (538)
T KOG0661|consen  214 SEIDQI  219 (538)
T ss_pred             cHHHHH
Confidence            876653

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.96  E-value=3.4e-29  Score=218.62  Aligned_cols=162  Identities=33%  Similarity=0.536  Sum_probs=128.8

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------  101 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------  101 (257)
                      .++....+++.+.+.+|.|+||+||+|.+.....||||++......... .+.|.+|+.++.+                 
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~  112 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTSPP  112 (362)
T ss_pred             cceecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            3444555566777789999999999999875444999999887655554 6788888887443                 


Q ss_pred             -------------------------------------HHHHHHHHHhhCCCCC-eEeeCCCCCCeEEcCCC-CeEEeecc
Q 039073          102 -------------------------------------SVAHALSYLHHDCTLS-IVHRDISSNNILLDSNL-EAFVADFG  142 (257)
Q Consensus       102 -------------------------------------~i~~~l~~LH~~~~~~-i~H~dLkp~nill~~~~-~~~l~dfg  142 (257)
                                                           +|+.|+.|||++   + |+||||||+|+|++.++ ++||+|||
T Consensus       113 ~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFG  189 (362)
T KOG0192|consen  113 GSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFG  189 (362)
T ss_pred             CceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCc
Confidence                                                 899999999999   7 99999999999999997 99999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      +++........             .....||+.|||||++...            ...|+.++||||||+++|||++|+.
T Consensus       190 lsr~~~~~~~~-------------~~~~~GT~~wMAPEv~~~~------------~~~~~~K~DvySFgIvlWEl~t~~~  244 (362)
T KOG0192|consen  190 LSREKVISKTS-------------MTSVAGTYRWMAPEVLRGE------------KSPYTEKSDVYSFGIVLWELLTGEI  244 (362)
T ss_pred             cceeecccccc-------------ccCCCCCccccChhhhcCC------------CCcCCccchhhhHHHHHHHHHHCCC
Confidence            99876533211             1225789999995444311            4568999999999999999999999


Q ss_pred             CCccccc
Q 039073          223 PGELLSS  229 (257)
Q Consensus       223 Pf~~~~~  229 (257)
                      ||.....
T Consensus       245 Pf~~~~~  251 (362)
T KOG0192|consen  245 PFEDLAP  251 (362)
T ss_pred             CCCCCCH
Confidence            9997653

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.7e-29  Score=211.61  Aligned_cols=157  Identities=29%  Similarity=0.397  Sum_probs=121.8

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHH------------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQ------------------------------   93 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~------------------------------   93 (257)
                      .-.|...+.+|.|+||.||+|... ++..||||+.-....-.+...+-..                              
T Consensus        23 ~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVle  102 (364)
T KOG0658|consen   23 EISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLE  102 (364)
T ss_pred             EEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence            345778899999999999999654 5789999998654322211111000                              


Q ss_pred             ----------H------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccCccccccC
Q 039073           94 ----------N------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLHVD  150 (257)
Q Consensus        94 ----------~------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~~~~~~~~  150 (257)
                                +            +++++..|+++|+.|||+.   +|+||||||.|+|+|.+ |.+||+|||.|+.....
T Consensus       103 ymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~  179 (364)
T KOG0658|consen  103 YMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKG  179 (364)
T ss_pred             hchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccC
Confidence                      0            2334566999999999998   99999999999999965 89999999999988665


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSL  230 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~  230 (257)
                      +...+              -+.|..|.|||+++++..             |+.+.||||.||++.||+.|++-|.|.+..
T Consensus       180 epniS--------------YicSRyYRaPELifga~~-------------Yt~~IDiWSaGCV~aELl~g~plFpG~s~~  232 (364)
T KOG0658|consen  180 EPNIS--------------YICSRYYRAPELIFGATE-------------YTTSIDIWSAGCVMAELLKGQPLFPGDSSV  232 (364)
T ss_pred             CCcee--------------EEEeccccCHHHHcCccc-------------cCceeEEhhhhHHHHHHhcCCcccCCCCHH
Confidence            54432              245778999777776655             488999999999999999999999987654


Q ss_pred             c
Q 039073          231 S  231 (257)
Q Consensus       231 ~  231 (257)
                      +
T Consensus       233 d  233 (364)
T KOG0658|consen  233 D  233 (364)
T ss_pred             H
Confidence            4

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=2.6e-29  Score=225.20  Aligned_cols=148  Identities=24%  Similarity=0.389  Sum_probs=119.7

Q ss_pred             ccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++++.||+|+||+|.+| ..++++.||||+++....    +....+.|+.+                           
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~----f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~H  262 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR----FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNH  262 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH----HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccc
Confidence            8999999999999999999 556899999999986532    22223333333                           


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC--CCeEEeeccCcc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN--LEAFVADFGTAR  145 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~--~~~~l~dfg~~~  145 (257)
                                                     ++.||++||.+||+.   +|||+||||||||+...  ..+||+|||.+.
T Consensus       263 lciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc  339 (586)
T KOG0667|consen  263 LCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSC  339 (586)
T ss_pred             eeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccccc
Confidence                                           455999999999998   99999999999999744  368999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ......                ..-+-+..|.|              ||++.|.+|+.+.|||||||+++||++|.+.|.
T Consensus       340 ~~~q~v----------------ytYiQSRfYRA--------------PEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfp  389 (586)
T KOG0667|consen  340 FESQRV----------------YTYIQSRFYRA--------------PEVILGLPYDTAIDMWSLGCILAELFTGEPLFP  389 (586)
T ss_pred             ccCCcc----------------eeeeecccccc--------------chhhccCCCCCccceeehhhhHHhHhcCccccC
Confidence            654221                11245677888              899999999999999999999999999999999


Q ss_pred             cccccc
Q 039073          226 LLSSLS  231 (257)
Q Consensus       226 ~~~~~~  231 (257)
                      |.+..+
T Consensus       390 G~ne~D  395 (586)
T KOG0667|consen  390 GDNEYD  395 (586)
T ss_pred             CCCHHH
Confidence            876544

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.96  E-value=1.6e-28  Score=216.49  Aligned_cols=165  Identities=25%  Similarity=0.379  Sum_probs=121.0

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||+||+|.. .+++.||+|++.............+..|+.+                          
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            5799999999999999999955 4689999999975433223333444555444                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~  157 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRT  157 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcccccccccc
Confidence                                     334899999999999   9999999999999999999999999998754321100


Q ss_pred             CCcc-----cccc-----------------CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          154 RPYE-----WALT-----------------DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       154 ~~~~-----~~~~-----------------~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      ....     ....                 .........+||+.|+|              ||.+.+..++.++|+||||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~a--------------PE~~~~~~~~~~~DvwSlG  223 (363)
T cd05628         158 EFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIA--------------PEVFMQTGYNKLCDWWSLG  223 (363)
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccCCccccC--------------HHHHcCCCCCCchhhhhhH
Confidence            0000     0000                 00000123478999999              5666666678999999999


Q ss_pred             HHHHHHHhCCCCCccc
Q 039073          212 VVALKVLMGTHPGELL  227 (257)
Q Consensus       212 ~~l~ell~G~~Pf~~~  227 (257)
                      |++|||++|+.||.+.
T Consensus       224 vil~ell~G~~Pf~~~  239 (363)
T cd05628         224 VIMYEMLIGYPPFCSE  239 (363)
T ss_pred             HHHHHHHhCCCCCCCC
Confidence            9999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=210.37  Aligned_cols=155  Identities=25%  Similarity=0.331  Sum_probs=119.8

Q ss_pred             ccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      ..+|+..+.||+|+||+||+|. ..+|+.||+|++......+- .-....+                             
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG-~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEG-VPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccC-CCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            5668888899999999999995 45799999999975432100 0000111                             


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           95 --------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        95 --------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                      .++.+..|++.|++|||++   +|+||||||.|+++++.|.+||+|||
T Consensus        89 ~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFG  165 (323)
T KOG0594|consen   89 IGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFG  165 (323)
T ss_pred             cceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccc
Confidence                                            1333556999999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      +++....+...             .....+|..|.|||++.++..             |+..+||||+||+++||+++++
T Consensus       166 lAra~~ip~~~-------------yt~evvTlWYRaPEvLlGs~~-------------Ys~~vDiWs~GcIfaEm~~~~~  219 (323)
T KOG0594|consen  166 LARAFSIPMRT-------------YTPEVVTLWYRAPEVLLGSTS-------------YSTSVDIWSLGCIFAEMFTRRP  219 (323)
T ss_pred             hHHHhcCCccc-------------ccccEEEeeccCHHHhcCCCc-------------CCCCcchHhHHHHHHHHHhCCC
Confidence            99865433221             123467888999666655543             5889999999999999999999


Q ss_pred             CCccccc
Q 039073          223 PGELLSS  229 (257)
Q Consensus       223 Pf~~~~~  229 (257)
                      -|.+.++
T Consensus       220 LFpG~se  226 (323)
T KOG0594|consen  220 LFPGDSE  226 (323)
T ss_pred             CCCCCcH
Confidence            9998765

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-28  Score=215.82  Aligned_cols=155  Identities=25%  Similarity=0.373  Sum_probs=121.1

Q ss_pred             HhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccc-cH-HHHHHHHHHHHH--------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETE-DS-AFVKSFQNEAHV--------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~-~~-~~~~~~~~e~~~--------------------   98 (257)
                      .....+|++.+.||+|+||+|+.|. ..++..||+|++...... .. ...+...+|+.+                    
T Consensus        13 ~~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~   92 (370)
T KOG0583|consen   13 QLSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATP   92 (370)
T ss_pred             ccccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecC
Confidence            3456789999999999999999994 457899999987664211 11 122233344433                    


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccCcc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTAR  145 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~~~  145 (257)
                                                      +.+|++.|++|||.+   ||+||||||+|+++|.+ +++||+|||++.
T Consensus        93 ~~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~s~  169 (370)
T KOG0583|consen   93 TKIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGLSA  169 (370)
T ss_pred             CeEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEecccccc
Confidence                                            455999999999999   99999999999999999 999999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-C-CCccchhhHHHHHHHHHhCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-V-TEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~-~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      ........             ....+||+.|+|||+              +.+.. | +.++|+||+|++||.|++|+.|
T Consensus       170 ~~~~~~~~-------------l~t~cGsp~Y~aPEv--------------l~~~~~Y~g~~aDvWS~GViLy~ml~G~~P  222 (370)
T KOG0583|consen  170 ISPGEDGL-------------LKTFCGSPAYAAPEV--------------LSGKGTYSGKAADVWSLGVILYVLLCGRLP  222 (370)
T ss_pred             ccCCCCCc-------------ccCCCCCcccCCHHH--------------hCCCCCcCCchhhhhhhHHHHHHHHhCCCC
Confidence            77411111             234689999999554              55444 4 5899999999999999999999


Q ss_pred             Ccc
Q 039073          224 GEL  226 (257)
Q Consensus       224 f~~  226 (257)
                      |+.
T Consensus       223 F~d  225 (370)
T KOG0583|consen  223 FDD  225 (370)
T ss_pred             CCC
Confidence            997

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.96  E-value=5.9e-29  Score=207.31  Aligned_cols=160  Identities=26%  Similarity=0.337  Sum_probs=124.5

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH---------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN---------------------------   94 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~---------------------------   94 (257)
                      +..++|+.++.|++|+||.||+|++ +++.+||+|+++..... +.+--...+                           
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek-~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~  151 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEK-EGFPITSLREINILLKARHPNIVEVKEVVVGSNMDK  151 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccccc-CCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccce
Confidence            3456789999999999999999955 57999999999865321 111112223                           


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           95 --------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        95 --------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                |+..|..|++.|+.|||++   .|+||||||+|+|+...|.+|++|||+|+.+.
T Consensus       152 iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~yg  228 (419)
T KOG0663|consen  152 IYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYG  228 (419)
T ss_pred             eeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhc
Confidence                                      3334556999999999999   99999999999999999999999999999875


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .+...             .....=|..|.|||++.+..-             |++..|+||+||++.|++.+++-|.|.+
T Consensus       229 sp~k~-------------~T~lVVTLWYRaPELLLG~~t-------------yst~iDMWSvGCI~aE~l~~kPlf~G~s  282 (419)
T KOG0663|consen  229 SPLKP-------------YTPLVVTLWYRAPELLLGAKT-------------YSTAVDMWSVGCIFAELLTQKPLFPGKS  282 (419)
T ss_pred             CCccc-------------CcceEEEeeecCHHHhcCCcc-------------cCcchhhhhHHHHHHHHHhcCCCCCCCc
Confidence            44211             223455888999665544432             6999999999999999999999999877


Q ss_pred             cccC
Q 039073          229 SLSS  232 (257)
Q Consensus       229 ~~~~  232 (257)
                      .+++
T Consensus       283 E~dQ  286 (419)
T KOG0663|consen  283 EIDQ  286 (419)
T ss_pred             hHHH
Confidence            6553

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3.7e-28  Score=214.04  Aligned_cols=165  Identities=25%  Similarity=0.384  Sum_probs=120.8

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|+||+||+|.. .+++.||||++.............+..|+.+                          
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            4799999999999999999965 4689999999976433223334445555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  157 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRT  157 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceeccccccc
Confidence                                     334899999999999   9999999999999999999999999998764322110


Q ss_pred             CCccccc-------------c------------CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchh
Q 039073          154 RPYEWAL-------------T------------DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVY  208 (257)
Q Consensus       154 ~~~~~~~-------------~------------~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Diw  208 (257)
                      .......             .            ..........||+.|+|              ||+..+..++.++|+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Diw  223 (364)
T cd05599         158 EFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIA--------------PEVFLQTGYNKECDWW  223 (364)
T ss_pred             cccccccccccccccccccccccccccccchhhcccccccccccCccccC--------------HHHHcCCCCCCeeeee
Confidence            0000000             0            00000112468999999              5555556678999999


Q ss_pred             hHHHHHHHHHhCCCCCccc
Q 039073          209 SFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       209 SlG~~l~ell~G~~Pf~~~  227 (257)
                      ||||++|||++|..||...
T Consensus       224 SlG~il~el~~G~~Pf~~~  242 (364)
T cd05599         224 SLGVIMYEMLVGYPPFCSD  242 (364)
T ss_pred             cchhHHHHhhcCCCCCCCC
Confidence            9999999999999999754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-28  Score=211.71  Aligned_cols=168  Identities=26%  Similarity=0.359  Sum_probs=127.6

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH-------H----HHHHHHHHHHHHHH------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS-------A----FVKSFQNEAHVLST------  101 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~-------~----~~~~~~~e~~~l~~------  101 (257)
                      +-..-.+.|++.+.||.|.||+|-+|.. .+++.||||++.+......       +    -.+...+|+.++.+      
T Consensus        91 ~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   91 QDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             ccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            3345578899999999999999999965 4799999999975432111       0    12456677776443      


Q ss_pred             -----------------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073          102 -----------------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus       102 -----------------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                     +++.||+|||.+   ||+||||||.|+|++++|
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~g  247 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSDG  247 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCCC
Confidence                                                           699999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      ++||+|||++...+........        -.+....||+.|+|||+|...-.          ....+.+.||||+|++|
T Consensus       248 ~VKIsDFGVs~~~~~~~~~~~d--------~~L~~tvGTPAF~APE~c~~~~~----------~~~~g~a~DiWalGVTL  309 (576)
T KOG0585|consen  248 TVKISDFGVSNEFPQGSDEGSD--------DQLSRTVGTPAFFAPELCSGGNS----------FSYSGFALDIWALGVTL  309 (576)
T ss_pred             cEEeeccceeeecccCCccccH--------HHHhhcCCCccccchHhhcCCCC----------ccccchhhhhhhhhhhH
Confidence            9999999999877544221110        11233689999999887754221          11136899999999999


Q ss_pred             HHHHhCCCCCcccc
Q 039073          215 LKVLMGTHPGELLS  228 (257)
Q Consensus       215 ~ell~G~~Pf~~~~  228 (257)
                      |.++.|+.||.+..
T Consensus       310 YCllfG~~PF~~~~  323 (576)
T KOG0585|consen  310 YCLLFGQLPFFDDF  323 (576)
T ss_pred             HHhhhccCCcccch
Confidence            99999999998643

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.1e-29  Score=233.64  Aligned_cols=187  Identities=26%  Similarity=0.343  Sum_probs=143.9

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH--------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--------------  101 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--------------  101 (257)
                      ...++.-..+||++.+.||+|+||.|..+.+ .++++||+|++.+...-.......|..|..+++.              
T Consensus        66 ~v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQ  145 (1317)
T KOG0612|consen   66 KVKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQ  145 (1317)
T ss_pred             HHHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhc
Confidence            4566777789999999999999999999955 5799999999987433322334566666655322              


Q ss_pred             -------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073          102 -------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus       102 -------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                           .|+-||.-+|++   |++||||||+|||||..|+++|+|||.+
T Consensus       146 D~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFGsC  222 (1317)
T KOG0612|consen  146 DERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFGSC  222 (1317)
T ss_pred             CccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccchhH
Confidence                                                 688999999999   9999999999999999999999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      -.+.......+            ....|||.|.+||++......         .+.|+..+|+||+||++|||+.|..||
T Consensus       223 lkm~~dG~V~s------------~~aVGTPDYISPEvLqs~~~~---------~g~yG~ecDwWSlGV~~YEMlyG~TPF  281 (1317)
T KOG0612|consen  223 LKMDADGTVRS------------SVAVGTPDYISPEVLQSQGDG---------KGEYGRECDWWSLGVFMYEMLYGETPF  281 (1317)
T ss_pred             HhcCCCCcEEe------------ccccCCCCccCHHHHHhhcCC---------ccccCCccchhhhHHHHHHHHcCCCcc
Confidence            87765443322            336799999998887544321         255899999999999999999999999


Q ss_pred             cccccccCCCCCcchhhhhhcccCCCCCCC
Q 039073          225 ELLSSLSSSSGPKIMLIDVLDQRLSPPVNQ  254 (257)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~  254 (257)
                      ..-+=       ...+-+|++++=.-.+|+
T Consensus       282 Yadsl-------veTY~KIm~hk~~l~FP~  304 (1317)
T KOG0612|consen  282 YADSL-------VETYGKIMNHKESLSFPD  304 (1317)
T ss_pred             hHHHH-------HHHHHHHhchhhhcCCCc
Confidence            85422       224556777655545553

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.95  E-value=3.8e-28  Score=214.79  Aligned_cols=163  Identities=26%  Similarity=0.365  Sum_probs=121.6

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .+....++|++.+.||+|+||.||++... +++.||+|++.+.........+.+..|+.+                    
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK  116 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            34445688999999999999999999654 688999999865322222222334444433                    


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||+|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~  193 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD  193 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccceecc
Confidence                                          445899999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......            .....||+.|+|||++.....          ...++.++|+||+||++|+|++|+.||.+.
T Consensus       194 ~~~~~~------------~~~~~gt~~Y~aPE~~~~~~~----------~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         194 ETGMVR------------CDTAVGTPDYISPEVLKSQGG----------DGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             cCCcee------------cccCCCCcccCCHHHHhccCC----------CCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            221100            123468999999666533210          112578999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.95  E-value=5.6e-28  Score=209.74  Aligned_cols=151  Identities=27%  Similarity=0.390  Sum_probs=117.2

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||+|... +++.||||++.+..............|..+                           
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            5889999999999999999654 688999999875432222222223333222                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~  157 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVT  157 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCc
Confidence                                     344899999999999   9999999999999999999999999998753221111


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....||+.|+|              ||.+.+..++.++|+|||||++|||++|+.||.+.
T Consensus       158 -------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~  204 (323)
T cd05616         158 -------------TKTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  204 (323)
T ss_pred             -------------cccCCCChhhcC--------------HHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence                         123468999999              66666667899999999999999999999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=9.8e-29  Score=210.76  Aligned_cols=170  Identities=26%  Similarity=0.410  Sum_probs=144.3

Q ss_pred             hhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL----------------------   99 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l----------------------   99 (257)
                      +.-.+|++.+.||.|.||+|-+| ++..|+.||||.+++.+..+++.+-.+.+|++++                      
T Consensus        50 nlkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIv  129 (668)
T KOG0611|consen   50 NLKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIV  129 (668)
T ss_pred             chhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEE
Confidence            34578999999999999999999 5578999999999999888888888888888873                      


Q ss_pred             -----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073          100 -----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus       100 -----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                   .+||..|+-|||.+   +++|||||-+|||+|.+++++|+|||++..+...
T Consensus       130 ivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~  206 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYADK  206 (668)
T ss_pred             EEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhccc
Confidence                                         44999999999999   9999999999999999999999999999877544


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      ..              +...||++.|.+              ||.+.|.+| ++.+|-||+|++||-++.|..||++.  
T Consensus       207 kf--------------LqTFCGSPLYAS--------------PEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~--  256 (668)
T KOG0611|consen  207 KF--------------LQTFCGSPLYAS--------------PEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR--  256 (668)
T ss_pred             cH--------------HHHhcCCcccCC--------------ccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc--
Confidence            32              234689999999              888888887 68999999999999999999999986  


Q ss_pred             ccCCCCCcch-hhhhhcccCCCC
Q 039073          230 LSSSSGPKIM-LIDVLDQRLSPP  251 (257)
Q Consensus       230 ~~~~~~~~~~-~~~i~~~~l~~~  251 (257)
                            ++.. ..+|-+..+++|
T Consensus       257 ------Dhk~lvrQIs~GaYrEP  273 (668)
T KOG0611|consen  257 ------DHKRLVRQISRGAYREP  273 (668)
T ss_pred             ------hHHHHHHHhhcccccCC
Confidence                  3333 356666666644

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=9.8e-29  Score=221.26  Aligned_cols=151  Identities=26%  Similarity=0.364  Sum_probs=123.6

Q ss_pred             ccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..-|++++.||.|+.|+|..|+ ..+|+.+|||++.+...-....-..+.+|+-+                         
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv   90 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV   90 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence            4568999999999999999994 56899999999977632222223344444433                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +.+||+.|+.|||+.   +|+||||||+|+++|....+||+|||+|.......-
T Consensus        91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gkl  167 (786)
T KOG0588|consen   91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKL  167 (786)
T ss_pred             EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecccCCcc
Confidence                                      445999999999998   999999999999999999999999999987654332


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                    +...||++.|.|              ||++.|.+| +.++||||+|++||.|++|+.||++
T Consensus       168 --------------LeTSCGSPHYA~--------------PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD  214 (786)
T KOG0588|consen  168 --------------LETSCGSPHYAA--------------PEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD  214 (786)
T ss_pred             --------------ccccCCCcccCC--------------chhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC
Confidence                          234689999999              777777777 6899999999999999999999985

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.95  E-value=6.6e-28  Score=209.38  Aligned_cols=151  Identities=25%  Similarity=0.379  Sum_probs=117.6

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||+|... +++.||+|++...........+.+..|.++                           
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            5889999999999999999654 688999999875432222223344444433                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKT  157 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCc
Confidence                                     334899999999999   9999999999999999999999999998643211110


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....||..|+|              ||.+.+..++.++|+||+||++|+|++|+.||.+.
T Consensus       158 -------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (324)
T cd05587         158 -------------TRTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  204 (324)
T ss_pred             -------------eeeecCCccccC--------------hhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence                         123468999999              66666666789999999999999999999999754

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1e-28  Score=217.25  Aligned_cols=189  Identities=22%  Similarity=0.320  Sum_probs=146.0

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      +......|++++.||.|+.++||++...+.+.||+|++... ..+.+.+..|..|+..|.+                   
T Consensus       356 i~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~-~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~  434 (677)
T KOG0596|consen  356 IKVKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLL-EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGY  434 (677)
T ss_pred             EEECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHh-hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCce
Confidence            34556779999999999999999998888888999888654 3455668899999988654                   


Q ss_pred             ---------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 ---------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ---------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                       |++.|+.++|.+   ||+|.||||.|+++- .|.+||+|||+|...+
T Consensus       435 lYmvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~  510 (677)
T KOG0596|consen  435 LYMVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGIANAIQ  510 (677)
T ss_pred             EEEEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeechhcccC
Confidence                                             899999999999   999999999999985 5789999999999887


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...+...           -...+||..||+||.+++-..-.   -.--....+++++||||+||+||+|+.|++||....
T Consensus       511 ~DTTsI~-----------kdsQvGT~NYMsPEAl~~~~s~~---~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~  576 (677)
T KOG0596|consen  511 PDTTSIV-----------KDSQVGTVNYMSPEALTDMSSSR---ENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII  576 (677)
T ss_pred             cccccee-----------eccccCcccccCHHHHhhccccc---cCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH
Confidence            6543321           24568999999999987654321   000112236899999999999999999999998653


Q ss_pred             cccCCCCCcchhhhhhcccCCCCCCC
Q 039073          229 SLSSSSGPKIMLIDVLDQRLSPPVNQ  254 (257)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~l~~~~~~  254 (257)
                      +      ...++..|.||....++|+
T Consensus       577 n------~~aKl~aI~~P~~~Iefp~  596 (677)
T KOG0596|consen  577 N------QIAKLHAITDPNHEIEFPD  596 (677)
T ss_pred             H------HHHHHHhhcCCCccccccC
Confidence            2      2335666777766555553

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.95  E-value=8e-28  Score=213.45  Aligned_cols=164  Identities=24%  Similarity=0.389  Sum_probs=120.5

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------------   99 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------------   99 (257)
                      +|++.+.||+|+||+||+|.. .+++.||+|++.............+..|+.++                          
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            689999999999999999954 57889999999765433333445566665552                          


Q ss_pred             -------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073          100 -------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus       100 -------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                               ..|++.||.|||..   +|+||||||+||+++.++.++|+|||++..........
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~  158 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSK  158 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccc
Confidence                                     33899999999999   99999999999999999999999999976432111000


Q ss_pred             Ccc---------------c-------------------cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC
Q 039073          155 PYE---------------W-------------------ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV  200 (257)
Q Consensus       155 ~~~---------------~-------------------~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~  200 (257)
                      ...               +                   .............||..|+|              ||.+.+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a--------------PE~~~~~~  224 (381)
T cd05626         159 YYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIA--------------PEVLLRKG  224 (381)
T ss_pred             cccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccC--------------HHHHcCCC
Confidence            000               0                   00000000123468999999              55555666


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          201 VTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       201 ~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ++.++||||+||++|||++|+.||...
T Consensus       225 ~~~~~DiwSlG~il~elltG~~Pf~~~  251 (381)
T cd05626         225 YTQLCDWWSVGVILFEMLVGQPPFLAP  251 (381)
T ss_pred             CCCccceeehhhHHHHHHhCCCCCcCC
Confidence            789999999999999999999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.95  E-value=1.1e-27  Score=204.28  Aligned_cols=150  Identities=25%  Similarity=0.375  Sum_probs=117.7

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      .|+..+.||+|+||.||++.. .+|+.||+|.+.............+.+|+.+                           
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            378889999999999999965 5799999999875433222222334455444                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET  157 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe
Confidence                                      334899999999999   999999999999999999999999999876432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    .....|+..|+|              ||.+.+..++.++|+||+||++|+|++|+.||...
T Consensus       158 --------------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  204 (285)
T cd05631         158 --------------VRGRVGTVGYMA--------------PEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKR  204 (285)
T ss_pred             --------------ecCCCCCCCccC--------------HhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCC
Confidence                          112458899999              56666666789999999999999999999999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.2e-28  Score=207.72  Aligned_cols=166  Identities=27%  Similarity=0.441  Sum_probs=133.9

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      +-.++....++|++...||.|..+.||+| ..+.+..||||++...+....  +..+++|+..                 
T Consensus        17 ~~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~--ld~l~kE~~~msl~~HPNIv~~~~sFv   94 (516)
T KOG0582|consen   17 SEKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNND--LDALRKEVQTMSLIDHPNIVTYHCSFV   94 (516)
T ss_pred             ccccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhh--HHHHHHHHHHhhhcCCCCcceEEEEEE
Confidence            33445566789999999999999999999 567789999999987665443  6677777765                 


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          +.+++++||.|||.+   |.+|||+|+.||||+++|.++|+|||
T Consensus        95 v~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFg  171 (516)
T KOG0582|consen   95 VDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFG  171 (516)
T ss_pred             ecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCce
Confidence                                                334899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++..+..+..+....         .+...||+.|||||++++.            ...|+.|+||||||++..|+++|+.
T Consensus       172 vsa~l~~~G~R~~~r---------f~tfvgtp~wmAPEvl~q~------------~~GYdfKaDIwSfGITA~ELA~G~a  230 (516)
T KOG0582|consen  172 VSASLFDSGDRQVTR---------FNTFVGTPCWMAPEVLMQQ------------LHGYDFKADIWSFGITACELAHGHA  230 (516)
T ss_pred             eeeeecccCceeeEe---------eccccCcccccChHHhhhc------------ccCccchhhhhhhhHHHHHHhcCCC
Confidence            988776544332211         1346799999998876433            2247999999999999999999999


Q ss_pred             CCcccc
Q 039073          223 PGELLS  228 (257)
Q Consensus       223 Pf~~~~  228 (257)
                      ||....
T Consensus       231 Pf~k~p  236 (516)
T KOG0582|consen  231 PFSKYP  236 (516)
T ss_pred             CcccCC
Confidence            998653

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.2e-28  Score=214.30  Aligned_cols=165  Identities=26%  Similarity=0.385  Sum_probs=119.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|+||.||++.. .+++.||||++...........+.+..|+++                          
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4799999999999999999965 5789999999865432222233445555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.||+|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~  157 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDS  157 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence                                     344899999999999   9999999999999999999999999998643211000


Q ss_pred             C---------Ccc-------ccccCC------------------CcccccccccccchhhhHhhhcCCCCchhhhhhhcC
Q 039073          154 R---------PYE-------WALTDT------------------LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM  199 (257)
Q Consensus       154 ~---------~~~-------~~~~~~------------------~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~  199 (257)
                      .         ...       ......                  ........||+.|+|              ||.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a--------------PE~~~~~  223 (377)
T cd05629         158 AYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIA--------------PEIFLQQ  223 (377)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccC--------------HHHHccC
Confidence            0         000       000000                  000012468999999              5555566


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          200 VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       200 ~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .++.++|+||+||++|||++|..||.+.
T Consensus       224 ~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (377)
T cd05629         224 GYGQECDWWSLGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             CCCCceeeEecchhhhhhhcCCCCCCCC
Confidence            6789999999999999999999999753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.1e-27  Score=205.03  Aligned_cols=149  Identities=27%  Similarity=0.351  Sum_probs=118.2

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+                          
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            47999999999999999999664 689999999865432222223344445443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|++|||++   +++||||||+||+++.++.++|+|||++.......  
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~--  155 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT--  155 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccCCc--
Confidence                                     334899999999999   99999999999999999999999999987543211  


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....|++.|+|              ||...+..++.++||||+||++|+|++|+.||.+.
T Consensus       156 --------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~  201 (291)
T cd05612         156 --------------WTLCGTPEYLA--------------PEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD  201 (291)
T ss_pred             --------------ccccCChhhcC--------------HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                          12458889999              55566666788999999999999999999999764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.95  E-value=8.9e-28  Score=213.14  Aligned_cols=164  Identities=26%  Similarity=0.392  Sum_probs=120.3

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------------   99 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------------   99 (257)
                      +|++.+.||+|+||.||+|.. .+++.||+|++.............+..|+.++                          
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            689999999999999999965 57889999999764333333345566665553                          


Q ss_pred             -------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073          100 -------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus       100 -------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                               ..|++.||+|||++   +|+||||||+||+++.++.++|+|||++..........
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~  158 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  158 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCcccccccccc
Confidence                                     33899999999999   99999999999999999999999999975432110000


Q ss_pred             Cc---------------cc-------------------cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC
Q 039073          155 PY---------------EW-------------------ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV  200 (257)
Q Consensus       155 ~~---------------~~-------------------~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~  200 (257)
                      ..               .+                   .............||+.|+|              ||++.+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a--------------PE~~~~~~  224 (382)
T cd05625         159 YYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIA--------------PEVLLRTG  224 (382)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCC--------------HHHhcCCC
Confidence            00               00                   00000000123468999999              66666666


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          201 VTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       201 ~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ++.++|+||+||++|||++|+.||.+.
T Consensus       225 ~~~~~DiwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         225 YTQLCDWWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             CCCeeeEEechHHHHHHHhCCCCCCCC
Confidence            789999999999999999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.95  E-value=8.9e-28  Score=209.09  Aligned_cols=150  Identities=26%  Similarity=0.372  Sum_probs=120.5

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+                         
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            578999999999999999999664 688999999875433222234455555544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.||+|||++   +++||||||+||+++.++.++|+|||++....... 
T Consensus        97 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-  172 (329)
T PTZ00263         97 LEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT-  172 (329)
T ss_pred             EcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc-
Confidence                                      334899999999999   99999999999999999999999999987553211 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     ....|++.|+|              ||...+..++.++|+|||||++|+|++|+.||.+.
T Consensus       173 ---------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  218 (329)
T PTZ00263        173 ---------------FTLCGTPEYLA--------------PEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD  218 (329)
T ss_pred             ---------------ceecCChhhcC--------------HHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence                           12468899999              55566666788999999999999999999999754

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.95  E-value=1.2e-27  Score=211.66  Aligned_cols=167  Identities=26%  Similarity=0.356  Sum_probs=124.7

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      ..+.++....++|++.+.||+|+||.||++... +++.||+|++...........+.+..|..+                
T Consensus        33 ~~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~  112 (371)
T cd05622          33 NKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF  112 (371)
T ss_pred             hHHhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            345566667799999999999999999999664 688999999864322222222233333333                


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~a  189 (371)
T cd05622         113 QDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (371)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCce
Confidence                                              445899999999999   9999999999999999999999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ..........            .....||+.|+|||++.....          ...++.++|+||+||++|||++|+.||
T Consensus       190 ~~~~~~~~~~------------~~~~~gt~~y~aPE~l~~~~~----------~~~~~~~~DiwSlGvilyell~G~~Pf  247 (371)
T cd05622         190 MKMNKEGMVR------------CDTAVGTPDYISPEVLKSQGG----------DGYYGRECDWWSVGVFLYEMLVGDTPF  247 (371)
T ss_pred             eEcCcCCccc------------ccCcccCccccCHHHHhccCC----------CccCCCccceeehhHHHHHHHhCCCCC
Confidence            7653221110            123568999999666533210          112578999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       248 ~~~  250 (371)
T cd05622         248 YAD  250 (371)
T ss_pred             CCC
Confidence            854

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.4e-28  Score=202.44  Aligned_cols=153  Identities=27%  Similarity=0.369  Sum_probs=127.9

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~---------------------  101 (257)
                      -+++|++++.||+|.||+|-++ +..+++.||||++++.-.-....+..-..|.++|..                     
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCF  245 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCF  245 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEE
Confidence            4788999999999999999999 556899999999987644433345555566655432                     


Q ss_pred             ------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          102 ------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       102 ------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                    +|+.||.|||++   +|+.||||-+|.++|.+|++||+|||+++..-...
T Consensus       246 VMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  246 VMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             EEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhccccc
Confidence                                          699999999999   99999999999999999999999999998653322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ..             ....|||+-|+|              ||++...-|++.+|+|.+|+++|||++|+.||..
T Consensus       323 ~t-------------~kTFCGTPEYLA--------------PEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn  370 (516)
T KOG0690|consen  323 DT-------------TKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYN  370 (516)
T ss_pred             ce-------------eccccCChhhcC--------------chhhccccccceeehhhhhHHHHHHHhccCcccc
Confidence            21             133689999999              7778888899999999999999999999999974

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.4e-28  Score=207.67  Aligned_cols=154  Identities=34%  Similarity=0.497  Sum_probs=127.5

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~---------------------  101 (257)
                      +...|.....||+|+||.||+| ...+++.||+|++.......  .+...++|+.+++.                     
T Consensus        11 ~~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d--eIediqqei~~Ls~~~~~~it~yygsyl~g~~Lwi   88 (467)
T KOG0201|consen   11 PELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED--EIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWI   88 (467)
T ss_pred             cccccccchhccccccceeeeeeeccccceEEEEEechhhcch--hhHHHHHHHHHHHhcCcchHHhhhhheeecccHHH
Confidence            3455778899999999999999 45689999999997654333  25566666666443                     


Q ss_pred             ------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          102 ------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       102 ------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                    +++.|+.|+|.+   +.+|||||+.||++..+|.++++|||++...+...
T Consensus        89 iMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~  165 (467)
T KOG0201|consen   89 IMEYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTV  165 (467)
T ss_pred             HHHHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechh
Confidence                                          699999999999   99999999999999999999999999998776544


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      .+.             ....||+.|||              ||++.+..|+.++||||||++.+||++|.+|+...-.
T Consensus       166 ~rr-------------~tfvGTPfwMA--------------PEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP  216 (467)
T KOG0201|consen  166 KRR-------------KTFVGTPFWMA--------------PEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP  216 (467)
T ss_pred             hcc-------------ccccccccccc--------------hhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc
Confidence            332             34689999999              7777777789999999999999999999999986543

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.95  E-value=1.2e-27  Score=211.64  Aligned_cols=162  Identities=26%  Similarity=0.358  Sum_probs=121.6

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .....++|++.+.||+|+||.||++.. .+++.||+|++.............+..|+.+                     
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~  117 (370)
T cd05596          38 LRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKY  117 (370)
T ss_pred             CCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            344578899999999999999999965 4788999999865332222222334444443                     


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.....
T Consensus       118 ~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~  194 (370)
T cd05596         118 LYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDA  194 (370)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeeccC
Confidence                                         334899999999999   999999999999999999999999999875532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....            .....||+.|+|||++....          ....++.++|+|||||++|||++|+.||.+.
T Consensus       195 ~~~~~------------~~~~~gt~~y~aPE~~~~~~----------~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         195 NGMVR------------CDTAVGTPDYISPEVLKSQG----------GDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             CCccc------------CCCCCCCcCeECHHHhccCC----------CCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            21100            12246899999966653321          1123688999999999999999999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=2.3e-27  Score=206.03  Aligned_cols=151  Identities=26%  Similarity=0.393  Sum_probs=116.9

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||+|.. .+|+.||+|++...........+.+..|..+                           
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            478899999999999999965 4789999999875432222222333333332                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~  157 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVT  157 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCCCCcc
Confidence                                     344899999999999   9999999999999999999999999998753221110


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....||..|+|              ||.+.+..++.++|+||+||++|+|++|+.||.+.
T Consensus       158 -------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         158 -------------TRTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             -------------ccCccCCccccC--------------HHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence                         122458899999              56666666789999999999999999999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.9e-28  Score=195.93  Aligned_cols=153  Identities=30%  Similarity=0.438  Sum_probs=126.9

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++++.||+|-||.||.| +.+++..||+|++.+.........+.+.+|+++                        
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            4678999999999999999999 556788999999976654433333444444433                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+.|||..   +++|||+||+|+|++.++.++++|||-+...+.
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~  176 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  176 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeecCC
Confidence                                         233899999999999   999999999999999999999999998776552


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      +.               ....+||..|++              ||+..+..++..+|+|++|++.||++.|.+||...+
T Consensus       177 ~k---------------R~tlcgt~dyl~--------------pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~  226 (281)
T KOG0580|consen  177 NK---------------RKTLCGTLDYLP--------------PEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS  226 (281)
T ss_pred             CC---------------ceeeecccccCC--------------HhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh
Confidence            22               133789999999              888999999999999999999999999999998653

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-27  Score=194.74  Aligned_cols=153  Identities=24%  Similarity=0.386  Sum_probs=119.0

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------------  101 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------------  101 (257)
                      ++.+.+..||.|+.|.|+++.. .+|...|||.+.......  ..+.+..++.++..                       
T Consensus        92 ndl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nke--e~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~Ic  169 (391)
T KOG0983|consen   92 NDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKE--ENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFIC  169 (391)
T ss_pred             HHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHH--HHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHH
Confidence            4445667799999999999954 579999999998754332  24555555554221                       


Q ss_pred             -----------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          102 -----------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       102 -----------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                   .++.||.||.+.+  +|+|||+||.|||+|..|++|++|||++..+..+..
T Consensus       170 MelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983|consen  170 MELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeecccc
Confidence                                         4889999998765  999999999999999999999999999987654322


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .              ....|++.|||||.+.         |+.  ...|+-++||||||++++|++||+.||.+.
T Consensus       248 h--------------trsAGC~~YMaPERid---------p~~--~~kYDiRaDVWSlGITlveLaTg~yPy~~c  297 (391)
T KOG0983|consen  248 H--------------TRSAGCAAYMAPERID---------PPD--KPKYDIRADVWSLGITLVELATGQYPYKGC  297 (391)
T ss_pred             c--------------ccccCCccccCccccC---------CCC--CCccchhhhhhhhccchhhhhcccCCCCCC
Confidence            1              2346899999977643         222  334799999999999999999999999973

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.95  E-value=1.2e-27  Score=211.77  Aligned_cols=166  Identities=23%  Similarity=0.357  Sum_probs=119.9

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|+. .+++.||+|++...........+.+.+|+.+                          
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            4799999999999999999965 4689999999875432222223445555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||.|||++   +|+||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~  157 (376)
T cd05598          81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (376)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccc
Confidence                                     234899999999999   9999999999999999999999999997533210000


Q ss_pred             CC-------c--------ccc---------------ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCC
Q 039073          154 RP-------Y--------EWA---------------LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTE  203 (257)
Q Consensus       154 ~~-------~--------~~~---------------~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~  203 (257)
                      ..       .        ...               ............||+.|+|              ||.+.+..++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~  223 (376)
T cd05598         158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIA--------------PEVLLRTGYTQ  223 (376)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccC--------------HHHHcCCCCCc
Confidence            00       0        000               0000000113468999999              56666666789


Q ss_pred             ccchhhHHHHHHHHHhCCCCCcccc
Q 039073          204 KCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       204 ~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ++||||+||++|||++|+.||.+..
T Consensus       224 ~~DiwSlGvilyell~G~~Pf~~~~  248 (376)
T cd05598         224 LCDWWSVGVILYEMLVGQPPFLADT  248 (376)
T ss_pred             ceeeeeccceeeehhhCCCCCCCCC
Confidence            9999999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.95  E-value=1.6e-27  Score=209.88  Aligned_cols=165  Identities=24%  Similarity=0.402  Sum_probs=120.1

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++.. .+++.||+|++.............+..|..+                          
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4799999999999999999965 4689999999975432222223444444443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~  157 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRT  157 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCccccccccc
Confidence                                     344899999999999   9999999999999999999999999998754321100


Q ss_pred             CCc---------ccccc-------------CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          154 RPY---------EWALT-------------DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       154 ~~~---------~~~~~-------------~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      ...         .....             ..........||+.|+|              ||.+.+..++.++|+||+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A--------------PE~~~~~~~~~~~DiwSlG  223 (360)
T cd05627         158 EFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIA--------------PEVFMQTGYNKLCDWWSLG  223 (360)
T ss_pred             ccccccccCCcccccccccccccccccccccccccccccCCCccccC--------------HHHHcCCCCCCcceecccc
Confidence            000         00000             00000123468999999              5666666678999999999


Q ss_pred             HHHHHHHhCCCCCccc
Q 039073          212 VVALKVLMGTHPGELL  227 (257)
Q Consensus       212 ~~l~ell~G~~Pf~~~  227 (257)
                      |++|||++|+.||.+.
T Consensus       224 vilyel~tG~~Pf~~~  239 (360)
T cd05627         224 VIMYEMLIGYPPFCSE  239 (360)
T ss_pred             ceeeecccCCCCCCCC
Confidence            9999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.9e-27  Score=208.16  Aligned_cols=165  Identities=25%  Similarity=0.406  Sum_probs=121.4

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|... +++.||||++.............+..|+.+                          
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            47999999999999999999664 789999999975432222223344444443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||+|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  157 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDR  157 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcc
Confidence                                     334899999999998   9999999999999999999999999998765433200


Q ss_pred             CCc----------------cccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          154 RPY----------------EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       154 ~~~----------------~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      ...                ...............||..|+|              ||.+.+..++.++|||||||++|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~el  223 (350)
T cd05573         158 EYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIA--------------PEVLRGTPYGLECDWWSLGVILYEM  223 (350)
T ss_pred             cccccccccccccccccccccccccccccccccccCccccC--------------HHHHcCCCCCCceeeEecchhhhhh
Confidence            000                0000000011233568999999              5666666678999999999999999


Q ss_pred             HhCCCCCccc
Q 039073          218 LMGTHPGELL  227 (257)
Q Consensus       218 l~G~~Pf~~~  227 (257)
                      ++|+.||...
T Consensus       224 l~g~~Pf~~~  233 (350)
T cd05573         224 LYGFPPFYSD  233 (350)
T ss_pred             ccCCCCCCCC
Confidence            9999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.9e-27  Score=207.16  Aligned_cols=149  Identities=27%  Similarity=0.405  Sum_probs=119.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|... +++.||+|++.............+..|+.+                          
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            47999999999999999999765 688999999976433222233445555444                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||.|||++   +++||||||+||+++.++.++|+|||++......   
T Consensus        81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~---  154 (333)
T cd05600          81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY---  154 (333)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccccc---
Confidence                                     334899999999999   9999999999999999999999999998754321   


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....|++.|+|              ||...+..++.++|+||+||++|||++|+.||.+.
T Consensus       155 -------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  201 (333)
T cd05600         155 -------------ANSVVGSPDYMA--------------PEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS  201 (333)
T ss_pred             -------------cCCcccCccccC--------------hhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC
Confidence                         123468899999              56666666789999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.95  E-value=2e-27  Score=206.32  Aligned_cols=145  Identities=26%  Similarity=0.347  Sum_probs=113.1

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||++.. .+|+.||+|+++............+..|+.+                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999965 5789999999976433222223444455544                                


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........      
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~------  151 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGAT------  151 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCc------
Confidence                               334899999999999   9999999999999999999999999998743221110      


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                             .....||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||..
T Consensus       152 -------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~  197 (323)
T cd05571         152 -------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             -------ccceecCccccC--------------hhhhcCCCCCccccCcccchhhhhhhcCCCCCCC
Confidence                   123468999999              5556666678999999999999999999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=3.4e-27  Score=205.64  Aligned_cols=158  Identities=27%  Similarity=0.387  Sum_probs=117.1

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++... +++.||+|.+.............+..|..+                          
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            57999999999999999999654 688999999865322222222233333332                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.||.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence                                      344899999999999   999999999999999999999999999876533221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..            .....|+..|+|||++.....         ....++.++|+||+|+++|+|++|+.||...
T Consensus       158 ~~------------~~~~~gt~~y~aPE~~~~~~~---------~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         158 VQ------------SSVAVGTPDYISPEILQAMED---------GMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             ee------------eccccCCcccCCHHHHhcccc---------CCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            10            012468999999666543210         0123578999999999999999999999754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.95  E-value=5.5e-27  Score=203.59  Aligned_cols=150  Identities=27%  Similarity=0.385  Sum_probs=116.4

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |++.+.||+|+||.||+|.. .+++.||||+++..........+.+..|.++                            
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            67889999999999999965 4789999999975432222223344444332                            


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDR  157 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCc
Confidence                                     344899999999999   9999999999999999999999999987643221111


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....|++.|+|              ||...+..++.++|+|||||++|+|++|+.||.+.
T Consensus       158 -------------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~  204 (324)
T cd05589         158 -------------TSTFCGTPEFLA--------------PEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD  204 (324)
T ss_pred             -------------ccccccCccccC--------------HhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC
Confidence                         122468899999              55555666788999999999999999999999854

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.94  E-value=3.6e-27  Score=206.29  Aligned_cols=151  Identities=25%  Similarity=0.389  Sum_probs=119.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-C-CCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-D-GKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~-~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... + +..||+|++...........+.+..|+.+                       
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~  107 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLY  107 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEE
Confidence            4567999999999999999999643 3 46899999865433333334455555554                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus       108 lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~  184 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR  184 (340)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecCCC
Confidence                                        344899999999999   9999999999999999999999999998754321


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .                ....||+.|+|              ||...+..++.++|+||+||++|||++|+.||.+.
T Consensus       185 ~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  231 (340)
T PTZ00426        185 T----------------YTLCGTPEYIA--------------PEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN  231 (340)
T ss_pred             c----------------ceecCChhhcC--------------HHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence            1                12468999999              55555556788999999999999999999999864

>PTZ00284 protein kinase; Provisional

Probab=99.94  E-value=4.7e-27  Score=213.83  Aligned_cols=156  Identities=19%  Similarity=0.258  Sum_probs=115.8

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHH--HHHHH-----------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAF--VKSFQ-----------------------   93 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~--~~~~~-----------------------   93 (257)
                      ++....++|++.+.||+|+||+||+|.. .+++.||||+++.........  ...+.                       
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            3444578999999999999999999965 468889999986421110000  00000                       


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCC----------
Q 039073           94 ----------------------------NEAHVLSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNL----------  134 (257)
Q Consensus        94 ----------------------------~e~~~l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~----------  134 (257)
                                                  .++..+..|++.||.|||+ .   +|+||||||+||+++.++          
T Consensus       203 ~~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~~~~~  279 (467)
T PTZ00284        203 ETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPVTNRA  279 (467)
T ss_pred             CCceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccccccc
Confidence                                        1122355689999999996 6   999999999999998765          


Q ss_pred             ------CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchh
Q 039073          135 ------EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVY  208 (257)
Q Consensus       135 ------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Diw  208 (257)
                            .++|+|||.+......                .....||..|+|              ||.+.+..++.++|||
T Consensus       280 ~~~~~~~vkl~DfG~~~~~~~~----------------~~~~~gt~~Y~A--------------PE~~~~~~~~~~~Diw  329 (467)
T PTZ00284        280 LPPDPCRVRICDLGGCCDERHS----------------RTAIVSTRHYRS--------------PEVVLGLGWMYSTDMW  329 (467)
T ss_pred             cCCCCceEEECCCCccccCccc----------------cccccCCccccC--------------cHHhhcCCCCcHHHHH
Confidence                  4899999987532211                122568999999              6666666688999999


Q ss_pred             hHHHHHHHHHhCCCCCcccc
Q 039073          209 SFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       209 SlG~~l~ell~G~~Pf~~~~  228 (257)
                      ||||++|||++|++||++..
T Consensus       330 SlGvil~elltG~~pf~~~~  349 (467)
T PTZ00284        330 SMGCIIYELYTGKLLYDTHD  349 (467)
T ss_pred             HHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999998643

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.94  E-value=8.7e-27  Score=200.31  Aligned_cols=153  Identities=25%  Similarity=0.380  Sum_probs=116.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------   97 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-------------------------   97 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++........  ...+.+|+.                         
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   80 (303)
T cd07869           3 KADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGT--PFTAIREASLLKGLKHANIVLLHDIIHTKETLTL   80 (303)
T ss_pred             ccccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccccc--chhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEE
Confidence            3578999999999999999999765 788999999875432111  112223332                         


Q ss_pred             --------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           98 --------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        98 --------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                .+..|++.|+.|||++   +++||||||+||+++.++.++|+|||++.......
T Consensus        81 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  157 (303)
T cd07869          81 VFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVPS  157 (303)
T ss_pred             EEECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCCC
Confidence                                      2455899999999999   99999999999999999999999999986543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....++..|+|||++...             ..++.++|+||+||++|+|++|+.||.+.
T Consensus       158 ~~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         158 HT-------------YSNEVVTLWYRPPDVLLGS-------------TEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             cc-------------CCCCcccCCCCChHHHcCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            11             1124578899995554322             23578899999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-27  Score=199.95  Aligned_cols=162  Identities=24%  Similarity=0.352  Sum_probs=126.7

Q ss_pred             HHHhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------  101 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------  101 (257)
                      +.......|...+.||.|++|.|..|. ..+|..||||++...... ....++..+|+.++..                 
T Consensus        16 ~~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~-~~~akRtlRElklLr~~~HeNIi~l~di~~p~~   94 (359)
T KOG0660|consen   16 ELFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFEN-QIDAKRTLRELKLLRHLRHENIIGLLDIFRPPS   94 (359)
T ss_pred             eEEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhc-hHHHHHHHHHHHHHHHhcCCCcceEEeeccccc
Confidence            444556677778999999999999994 458999999999754332 2335666677666432                 


Q ss_pred             --------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073          102 --------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus       102 --------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                            |++.|+.|+|+.   +++||||||.|++++.+..+|++|||+
T Consensus        95 ~~~f~DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGL  171 (359)
T KOG0660|consen   95 RDKFNDVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGL  171 (359)
T ss_pred             ccccceeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccc
Confidence                                                  899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      |+..... ....          .......|..|.|||++..             ...|+...||||.||++.||++|++-
T Consensus       172 AR~~~~~-~~~~----------~mTeYVaTRWYRAPElll~-------------~~~Yt~aiDiWSvGCI~AEmL~gkpl  227 (359)
T KOG0660|consen  172 ARYLDKF-FEDG----------FMTEYVATRWYRAPELLLN-------------SSEYTKAIDIWSVGCILAEMLTGKPL  227 (359)
T ss_pred             eeecccc-Cccc----------chhcceeeeeecCHHHHhc-------------cccccchhhhhhhhHHHHHHHcCCCC
Confidence            9977543 1110          1233467889999665533             33468999999999999999999999


Q ss_pred             Cccccc
Q 039073          224 GELLSS  229 (257)
Q Consensus       224 f~~~~~  229 (257)
                      |.|...
T Consensus       228 FpG~d~  233 (359)
T KOG0660|consen  228 FPGKDY  233 (359)
T ss_pred             CCCCch
Confidence            998653

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-27  Score=208.42  Aligned_cols=159  Identities=27%  Similarity=0.431  Sum_probs=127.7

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      .+.|....+.+.+.+.||+|.||.|+.|.+.....||+|.++......    +.|.+|+.+                   
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~----~~f~~Ea~iMk~L~H~~lV~l~gV~~~~  273 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSP----EAFLREAQIMKKLRHEKLVKLYGVCTKQ  273 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccCh----hHHHHHHHHHHhCcccCeEEEEEEEecC
Confidence            556666777788999999999999999999877789999998764443    455567666                   


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.|||+|++||+++   +++||||...|||++++..+||+|||++
T Consensus       274 ~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLA  350 (468)
T KOG0197|consen  274 EPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLA  350 (468)
T ss_pred             CceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccc
Confidence                                              344999999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHP  223 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~P  223 (257)
                      +....+.-...            ....-...|.|              ||.+....++.++||||||+++||+.| |+.|
T Consensus       351 r~~~d~~Y~~~------------~~~kfPIkWtA--------------PEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~p  404 (468)
T KOG0197|consen  351 RLIGDDEYTAS------------EGGKFPIKWTA--------------PEALNYGKFSSKSDVWSFGVLLWELFTYGRVP  404 (468)
T ss_pred             cccCCCceeec------------CCCCCCceecC--------------HHHHhhCCcccccceeehhhhHHHHhccCCCC
Confidence            94332221110            01112346888              778888889999999999999999998 9999


Q ss_pred             Cccccc
Q 039073          224 GELLSS  229 (257)
Q Consensus       224 f~~~~~  229 (257)
                      +.+.+.
T Consensus       405 y~~msn  410 (468)
T KOG0197|consen  405 YPGMSN  410 (468)
T ss_pred             CCCCCH
Confidence            998753

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=6.2e-28  Score=206.28  Aligned_cols=156  Identities=26%  Similarity=0.367  Sum_probs=125.4

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .....+|.++..||.|+||+|.+|+.+ +...||||++++.-.-....++.-..|.++                      
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            344567999999999999999999655 577899999987632221112222222222                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +|.+|+.||-|||+.   ||+.||||-+|+++|++|+++|+|||+++.--
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni  501 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  501 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccccccc
Confidence                                          345799999999999   99999999999999999999999999998643


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             ....+||+.|+|              ||++...+|+..+|+||+|++||||+.|++||++.
T Consensus       502 ~~~~T-------------TkTFCGTPdYiA--------------PEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  502 FDGVT-------------TKTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             cCCcc-------------eeeecCCCcccc--------------cceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence            33221             134789999999              89999999999999999999999999999999985

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.94  E-value=9e-27  Score=202.61  Aligned_cols=146  Identities=24%  Similarity=0.407  Sum_probs=113.8

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|.. .+++.||+|+++..........+.+..|..+                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999965 4688999999986543333333444444443                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|++|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT-----  152 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc-----
Confidence                                344899999999999   9999999999999999999999999998743211111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||+.|+|              ||...+..++.++|+||+||++|+|++|+.||+..
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~  199 (327)
T cd05617         153 --------TSTFCGTPNYIA--------------PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDII  199 (327)
T ss_pred             --------eecccCCcccCC--------------HHHHCCCCCCchheeehhHHHHHHHHhCCCCCCcc
Confidence                    122468999999              66666666789999999999999999999999754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.94  E-value=8.2e-27  Score=201.95  Aligned_cols=146  Identities=27%  Similarity=0.408  Sum_probs=111.3

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|.. .+++.||+|+++..........+....|..+                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999965 4688999999875432211112222222222                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~-----  152 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGK-----  152 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCc-----
Confidence                                445899999999999   9999999999999999999999999998754221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~  199 (316)
T cd05592         153 --------ASTFCGTPDYIA--------------PEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE  199 (316)
T ss_pred             --------cccccCCccccC--------------HHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence                    123568999999              55566666789999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.94  E-value=8.8e-27  Score=203.04  Aligned_cols=158  Identities=30%  Similarity=0.391  Sum_probs=116.7

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++... +++.||+|++.+...........+..|..+                          
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            57999999999999999999654 688899999864322211112223333322                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~  157 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  157 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheecccCCc
Confidence                                      344899999999999   999999999999999999999999999865432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..            .....||+.|+|||++.....         ....++.++|+|||||++|||++|+.||...
T Consensus       158 ~~------------~~~~~gt~~y~aPE~~~~~~~---------~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         158 VQ------------SSVAVGTPDYISPEILQAMED---------GKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             ce------------ecccccCccccCHHHHhcccc---------CCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence            10            112468999999766542210         1223688999999999999999999999754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.94  E-value=2.1e-26  Score=200.57  Aligned_cols=146  Identities=26%  Similarity=0.413  Sum_probs=113.5

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|.. .+++.||+|++++...........+..|..+                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4699999999999965 4688999999986543333333444444433                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~-----  152 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT-----  152 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc-----
Confidence                                334899999999999   9999999999999999999999999998753221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||.+.+..++.++|+||+||++|+|++|+.||+..
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (329)
T cd05618         153 --------TSTFCGTPNYIA--------------PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  199 (329)
T ss_pred             --------cccccCCccccC--------------HHHHcCCCCCCccceecccHHHHHHhhCCCCCccC
Confidence                    122468999999              56666666788999999999999999999999743

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1e-26  Score=202.60  Aligned_cols=158  Identities=29%  Similarity=0.408  Sum_probs=117.2

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++.. .+++.||+|++.+.........+.+..|..+                          
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            5799999999999999999965 4689999999864322222222333333332                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence                                      344899999999999   999999999999999999999999999865432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..            .....||+.|+|||++.....         ....++.++|+||+||++|+|++|+.||.+.
T Consensus       158 ~~------------~~~~~gt~~y~aPE~~~~~~~---------~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         158 VQ------------SNVAVGTPDYISPEILQAMED---------GKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             cc------------ccceeccccccCHHHHhhccc---------cccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence            10            012458999999666532110         0123578999999999999999999999753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.94  E-value=9.3e-27  Score=202.66  Aligned_cols=146  Identities=26%  Similarity=0.355  Sum_probs=113.5

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||++.. .+++.||+|++.............+..|+.+                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999965 4789999999976433222233445555544                                


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........      
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~------  151 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAAT------  151 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCcccc------
Confidence                               344899999999999   9999999999999999999999999998753221110      


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                             .....||+.|+|              ||.+.+..++.++|+||+||++|+|++|+.||...
T Consensus       152 -------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~  198 (328)
T cd05593         152 -------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (328)
T ss_pred             -------cccccCCcCccC--------------hhhhcCCCCCccCCccccchHHHHHhhCCCCCCCC
Confidence                   122468999999              55555666789999999999999999999999653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=1.7e-26  Score=201.09  Aligned_cols=155  Identities=26%  Similarity=0.319  Sum_probs=115.7

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||+|.. .+++.||||++........ ....+.+|+.+                           
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVS-DATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccch-hHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            588999999999999999965 4789999999864321111 12233344333                           


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++......
T Consensus        80 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  156 (338)
T cd07859          80 YVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVAFND  156 (338)
T ss_pred             EEEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccccccccc
Confidence                                        445899999999999   9999999999999999999999999998754322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....          ......|+..|+|||++...            ...++.++|+|||||++|||++|++||.+.
T Consensus       157 ~~~~~----------~~~~~~~t~~y~aPE~~~~~------------~~~~~~~~DvwSlGvvl~el~tg~~pf~~~  211 (338)
T cd07859         157 TPTAI----------FWTDYVATRWYRAPELCGSF------------FSKYTPAIDIWSIGCIFAEVLTGKPLFPGK  211 (338)
T ss_pred             cCccc----------cccCCCCCCCcCCHHHHhcc------------ccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            11100          01224688999996654321            134688999999999999999999999754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.94  E-value=1.7e-26  Score=196.59  Aligned_cols=153  Identities=26%  Similarity=0.358  Sum_probs=118.4

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++... +++.||+|++....... .....+.+|+.+                          
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENE-EVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccc-cchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEE
Confidence            47999999999999999999765 68899999987543221 112233334333                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++.........
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  156 (287)
T cd07848          80 EYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNA  156 (287)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCcccccccccc
Confidence                                     344899999999999   9999999999999999999999999998765322211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .            .....|+..|+|              ||...+..++.++|+||+||++|||++|++||.+.+
T Consensus       157 ~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~  205 (287)
T cd07848         157 N------------YTEYVATRWYRS--------------PELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGES  205 (287)
T ss_pred             c------------ccccccccccCC--------------cHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCC
Confidence            0            112457889999              555555667889999999999999999999998643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.94  E-value=9e-27  Score=202.03  Aligned_cols=146  Identities=27%  Similarity=0.403  Sum_probs=111.9

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||+|+.. +++.||+|+++..........+.+..|.++                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999664 688999999875432222222333333333                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~-----  152 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT-----  152 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCcc-----
Confidence                                344899999999999   9999999999999999999999999998753221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....|+..|+|              ||...+..++.++|+||+||++|+|++|+.||...
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~  199 (321)
T cd05591         153 --------TTTFCGTPDYIA--------------PEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD  199 (321)
T ss_pred             --------ccccccCccccC--------------HHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC
Confidence                    122468899999              55556666789999999999999999999999854

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.5e-26  Score=211.70  Aligned_cols=161  Identities=26%  Similarity=0.327  Sum_probs=122.8

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH--------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA--------------------   96 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~--------------------   96 (257)
                      ..+.....++|.+.+.||+|+||.||+|.. .+|+.||||++........ ....+..|+                    
T Consensus        24 ~~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~-~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~  102 (496)
T PTZ00283         24 EATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEA-DKNRAQAEVCCLLNCDFFSIVKCHEDFAK  102 (496)
T ss_pred             cccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHH-HHHHHHHHHHHHhcCCCCcEEEeecceec
Confidence            345556678999999999999999999964 5799999999865432211 112222222                    


Q ss_pred             -------------------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           97 -------------------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        97 -------------------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                 ..+..|++.||.|||+.   +++||||||+||+++.+
T Consensus       103 ~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~  179 (496)
T PTZ00283        103 KDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSN  179 (496)
T ss_pred             ccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCC
Confidence                                                       22445899999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.++|+|||+++..........           .....||+.|+|              ||...+..++.++|||||||+
T Consensus       180 ~~vkL~DFGls~~~~~~~~~~~-----------~~~~~Gt~~Y~a--------------PE~~~~~~~s~k~DVwSlGvi  234 (496)
T PTZ00283        180 GLVKLGDFGFSKMYAATVSDDV-----------GRTFCGTPYYVA--------------PEIWRRKPYSKKADMFSLGVL  234 (496)
T ss_pred             CCEEEEecccCeeccccccccc-----------cccccCCcceeC--------------HHHhCCCCCCcHHHHHHHHHH
Confidence            9999999999876532211100           123468999999              566666667899999999999


Q ss_pred             HHHHHhCCCCCccc
Q 039073          214 ALKVLMGTHPGELL  227 (257)
Q Consensus       214 l~ell~G~~Pf~~~  227 (257)
                      +|||++|+.||.+.
T Consensus       235 lyeLltG~~Pf~~~  248 (496)
T PTZ00283        235 LYELLTLKRPFDGE  248 (496)
T ss_pred             HHHHHHCCCCCCCC
Confidence            99999999999753

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.94  E-value=2.4e-26  Score=201.95  Aligned_cols=154  Identities=23%  Similarity=0.243  Sum_probs=119.2

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------------   97 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------------   97 (257)
                      ....++|++.+.||+|+||.||++.. .+++.||||++........ ..+.+.+|+.                       
T Consensus        13 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   91 (355)
T cd07874          13 FTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT-HAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL   91 (355)
T ss_pred             hhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChH-HHHHHHHHHHHHHHhCCCchhceeeeeeccccc
Confidence            45678999999999999999999965 4688999999875422211 1222222222                       


Q ss_pred             -------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           98 -------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        98 -------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                     .++.|++.||.|||++   +++||||||+||+++.++.++|+|||++..
T Consensus        92 ~~~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          92 EEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             cccceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCccccc
Confidence                                           2455899999999999   999999999999999999999999999875


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ......              .....||..|+|              ||...+..++.++|+|||||++|+|++|+.||.+
T Consensus       169 ~~~~~~--------------~~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  220 (355)
T cd07874         169 AGTSFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG  220 (355)
T ss_pred             CCCccc--------------cCCccccCCccC--------------HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            432211              112457889999              5555566678899999999999999999999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       221 ~  221 (355)
T cd07874         221 R  221 (355)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.94  E-value=1.2e-26  Score=201.94  Aligned_cols=152  Identities=30%  Similarity=0.436  Sum_probs=114.4

Q ss_pred             ccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccc-cHHHHHHHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETE-DSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~-----------------------   98 (257)
                      +|++.+.||+|+||.||+++.    .+++.||+|++.+.... .....+.+..|..+                       
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            588999999999999999954    36889999998653211 11112233334333                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.....
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence                                         344899999999999   999999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....            .....||..|+|||+              +.+. .++.++|||||||++|||++|+.||...
T Consensus       158 ~~~~~------------~~~~~gt~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  210 (332)
T cd05614         158 EEKER------------TYSFCGTIEYMAPEI--------------IRGKGGHGKAVDWWSLGILIFELLTGASPFTLE  210 (332)
T ss_pred             cCCCc------------cccccCCccccCHHH--------------hcCCCCCCCccccccchhhhhhhhcCCCCCCCC
Confidence            22111            122468999999554              4433 2578999999999999999999999743

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.94  E-value=2.1e-26  Score=200.45  Aligned_cols=146  Identities=25%  Similarity=0.413  Sum_probs=113.3

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||++.. .+++.||+|+++............+..|..+                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4699999999999965 4688999999976543333333444444443                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~-----  152 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT-----  152 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCc-----
Confidence                                344899999999999   9999999999999999999999999998643211111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||...+..++.++|+||+||++|+|++|+.||+..
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  199 (329)
T cd05588         153 --------TSTFCGTPNYIA--------------PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  199 (329)
T ss_pred             --------cccccCCccccC--------------HHHHcCCCCCCccceechHHHHHHHHHCCCCcccc
Confidence                    122468999999              55556666788999999999999999999999754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=5.1e-27  Score=199.90  Aligned_cols=153  Identities=29%  Similarity=0.485  Sum_probs=117.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|...+.||+|+||.||++... +|...|||.+.......   .+.+.+|+.+                         
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~---~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~   92 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT---SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYN   92 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh---HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeE
Confidence            566889999999999999999654 58999999997652111   3334444443                         


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLH  148 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~  148 (257)
                                                   +.+||++||.|||++   |++|+||||+|||++. ++.+||+|||+++...
T Consensus        93 i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~  169 (313)
T KOG0198|consen   93 IFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLE  169 (313)
T ss_pred             eeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCccccccc
Confidence                                         455899999999999   9999999999999999 7999999999988665


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......          .......||+.|||              ||++..+ .....+||||+||++.||+||+.||...
T Consensus       170 ~~~~~~----------~~~~~~~Gtp~~ma--------------PEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~  225 (313)
T KOG0198|consen  170 SKGTKS----------DSELSVQGTPNYMA--------------PEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF  225 (313)
T ss_pred             cccccc----------cccccccCCccccC--------------chhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh
Confidence            311000          00123579999999              5555532 2345999999999999999999999863

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.94  E-value=1.5e-26  Score=197.53  Aligned_cols=152  Identities=22%  Similarity=0.309  Sum_probs=114.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||.|+||.||+|.. .+++.||+|+++.......  ...+.+|+.+                         
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGA--PCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCc--chhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            56799999999999999999965 4788999999864321111  1122233322                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.||+|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        82 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~  158 (288)
T cd07871          82 FEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK  158 (288)
T ss_pred             EeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc
Confidence                                      445899999999999   999999999999999999999999999875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....++..|+|||++..             ...++.++|+||+||++|+|++|+.||.+.
T Consensus       159 ~-------------~~~~~~~~~y~aPE~~~~-------------~~~~~~~~DiwslG~~l~~l~~g~~pf~~~  207 (288)
T cd07871         159 T-------------YSNEVVTLWYRPPDVLLG-------------STEYSTPIDMWGVGCILYEMATGRPMFPGS  207 (288)
T ss_pred             c-------------ccCceecccccChHHhcC-------------CcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1             112357889999554422             133688999999999999999999999753

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.94  E-value=2.2e-26  Score=202.58  Aligned_cols=153  Identities=25%  Similarity=0.274  Sum_probs=119.2

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH------------------------   97 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~------------------------   97 (257)
                      ...++|++.+.||+|+||.||++.. .+|+.||+|++....... .....+.+|+.                        
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   96 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQ-THAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLE   96 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccch-hHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcc
Confidence            4568999999999999999999965 468999999986532211 11222223322                        


Q ss_pred             ------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           98 ------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        98 ------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                    .+..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus        97 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876          97 EFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             ccceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence                                          2455899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....||..|+|              ||.+.+..++.++|+||+||++|+|++|+.||.+.
T Consensus       174 ~~~~~--------------~~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         174 CTNFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             ccCcc--------------CCCCcccCCCCC--------------chhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            32111              122457889999              66666666789999999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.3e-26  Score=200.28  Aligned_cols=143  Identities=28%  Similarity=0.392  Sum_probs=111.4

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||+|+||.||+|... +++.||+|++.............+..|+.+                                  
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            689999999999654 688999999875432222234445555544                                  


Q ss_pred             -----------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccccc
Q 039073           99 -----------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT  161 (257)
Q Consensus        99 -----------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  161 (257)
                                       +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........        
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~--------  149 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDK--------  149 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCc--------
Confidence                             334899999999999   9999999999999999999999999998753221111        


Q ss_pred             CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       162 ~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                           .....||+.|+|              ||...+..++.++|+||+||++|+|++|+.||.+
T Consensus       150 -----~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~  195 (312)
T cd05585         150 -----TNTFCGTPEYLA--------------PELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD  195 (312)
T ss_pred             -----cccccCCcccCC--------------HHHHcCCCCCCccceechhHHHHHHHhCCCCcCC
Confidence                 123468999999              5555556678999999999999999999999975

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.94  E-value=2.2e-26  Score=196.27  Aligned_cols=151  Identities=26%  Similarity=0.385  Sum_probs=114.5

Q ss_pred             cccccceeeeecCceeEEEEEe-C-CCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-P-DGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~-~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      ++|++.+.||+|+||.||+|.. . +++.||+|+++........ ...+.+                             
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGM-PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCc-hHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            4799999999999999999965 3 4678999988643211100 000111                             


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           95 -------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        95 -------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                     ++..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+
T Consensus        80 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T cd07862          80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGL  156 (290)
T ss_pred             CCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccc
Confidence                                           1223556899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +........              .....|+..|+|              ||...+..++.++|+||+||++|||++|++|
T Consensus       157 ~~~~~~~~~--------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~~  208 (290)
T cd07862         157 ARIYSFQMA--------------LTSVVVTLWYRA--------------PEVLLQSSYATPVDLWSVGCIFAEMFRRKPL  208 (290)
T ss_pred             eEeccCCcc--------------cccccccccccC--------------hHHHhCCCCCCccchHHHHHHHHHHHcCCCC
Confidence            875532211              123467899999              5555555578899999999999999999999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+..
T Consensus       209 f~~~~  213 (290)
T cd07862         209 FRGSS  213 (290)
T ss_pred             cCCCC
Confidence            98643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.94  E-value=1.4e-26  Score=201.00  Aligned_cols=146  Identities=25%  Similarity=0.349  Sum_probs=112.8

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||++.. .+|+.||+|++.............+..|+.+                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999965 4789999999975432222223344444443                                


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........      
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~------  151 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT------  151 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCc------
Confidence                               334899999999999   9999999999999999999999999987643221111      


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                             .....|+..|+|              ||.+.+..++.++|+|||||++|||++|+.||...
T Consensus       152 -------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  198 (323)
T cd05595         152 -------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             -------cccccCCcCcCC--------------cccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC
Confidence                   122468899999              66666666789999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.94  E-value=1.7e-26  Score=200.30  Aligned_cols=146  Identities=27%  Similarity=0.425  Sum_probs=111.2

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||+|... +++.||+|++...........+.+..|..+                                
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999664 688999999875422211122233333222                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.||+|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~-----  152 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT-----  152 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc-----
Confidence                                345899999999999   9999999999999999999999999998753221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||+.|+|              ||...+..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (320)
T cd05590         153 --------TSTFCGTPDYIA--------------PEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE  199 (320)
T ss_pred             --------ccccccCccccC--------------HHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence                    122468999999              55555666788999999999999999999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.94  E-value=3.2e-26  Score=201.85  Aligned_cols=153  Identities=24%  Similarity=0.259  Sum_probs=118.5

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH------------------------   97 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~------------------------   97 (257)
                      ...++|++.+.||+|+||.||++.. .+++.||||++........ ..+.+.+|+.                        
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~   99 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQT-HAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE   99 (364)
T ss_pred             chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCch-hHHHHHHHHHHHHhcCCCCccccceeeccccccc
Confidence            4468899999999999999999965 4688999999875322111 1122222222                        


Q ss_pred             ------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           98 ------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        98 ------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                    .++.|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       100 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  176 (364)
T cd07875         100 EFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTA  176 (364)
T ss_pred             ccCeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCcccc
Confidence                                          2455899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....||..|+|              ||...+..++.++|+|||||++|+|++|+.||.+.
T Consensus       177 ~~~~~--------------~~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         177 GTSFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             CCCCc--------------ccCCcccCCcCC--------------HHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence            32211              122457889999              55556666788999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-27  Score=203.98  Aligned_cols=153  Identities=25%  Similarity=0.386  Sum_probs=123.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..+.|..-+.||+|+||.|+-++. .+|++||.|++.+-......-..-...|..+                        
T Consensus       183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL  262 (591)
T ss_pred             cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence            367789999999999999999965 4799999999865432221112223333333                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.+|+.||+.||..   +|+.|||||+|||+|..|+++|+|+|+|..++.
T Consensus       263 VLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             EEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence                                         455899999999999   999999999999999999999999999987764


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....              ....||.+|||              ||++....|+..+|+||+||++|||+.|+.||..-
T Consensus       340 g~~~--------------~~rvGT~GYMA--------------PEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~  389 (591)
T KOG0986|consen  340 GKPI--------------RGRVGTVGYMA--------------PEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQR  389 (591)
T ss_pred             CCcc--------------ccccCcccccC--------------HHHHcCCcccCCccHHHHHhHHHHHHcccCchhhh
Confidence            4322              23579999999              77788888999999999999999999999999753

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=3e-26  Score=204.02  Aligned_cols=155  Identities=23%  Similarity=0.282  Sum_probs=114.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHH-HH--------------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAF-VK--------------------------------   90 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~-~~--------------------------------   90 (257)
                      ..+|++.+.||+|+||.||++.. .+++.||+|+........+.. .+                                
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~~~L~  170 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLY  170 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCCCCHH
Confidence            36799999999999999999955 578999999764321110000 00                                


Q ss_pred             HH--------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccC
Q 039073           91 SF--------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD  162 (257)
Q Consensus        91 ~~--------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  162 (257)
                      .+        ..++..+..|++.||.|||++   +|+||||||+||+++.++.++|+|||++.........         
T Consensus       171 ~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~---------  238 (391)
T PHA03212        171 CYLAAKRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINAN---------  238 (391)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccccccccc---------
Confidence            00        012223556899999999999   9999999999999999999999999998643211110         


Q ss_pred             CCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       163 ~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                         ......||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||....
T Consensus       239 ---~~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~  287 (391)
T PHA03212        239 ---KYYGWAGTIATNA--------------PELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKD  287 (391)
T ss_pred             ---ccccccCccCCCC--------------hhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcc
Confidence               0123468999999              555666667899999999999999999998876543

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-26  Score=204.27  Aligned_cols=152  Identities=27%  Similarity=0.439  Sum_probs=126.2

Q ss_pred             HhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++...|..-++||+|+.|.||.| +..+++.||||++....-...   +.+.+|+.+                      
T Consensus       269 ~dP~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~k---eLilnEi~Vm~~~~H~NiVnfl~Sylv~deL  345 (550)
T KOG0578|consen  269 GDPRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKK---ELLLNEILVMRDLHHPNIVNFLDSYLVGDEL  345 (550)
T ss_pred             CChhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCch---hhhHHHHHHHHhccchHHHHHHHHhccccee
Confidence            345677888899999999999999 566799999999976543332   223344333                      


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +.+++++||+|||..   +|+|||||.+||+++.+|.+||+|||++......
T Consensus       346 WVVMEym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~  422 (550)
T KOG0578|consen  346 WVVMEYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEE  422 (550)
T ss_pred             EEEEeecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccc
Confidence                                        445799999999999   9999999999999999999999999999887654


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....             ....||+.|||              ||+.....|+.++||||||++++||+.|++||-.
T Consensus       423 ~~KR-------------~TmVGTPYWMA--------------PEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln  471 (550)
T KOG0578|consen  423 QSKR-------------STMVGTPYWMA--------------PEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN  471 (550)
T ss_pred             cCcc-------------ccccCCCCccc--------------hhhhhhcccCccccchhhhhHHHHHhcCCCCccC
Confidence            4322             23689999999              8888888899999999999999999999999974

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.94  E-value=1.4e-26  Score=201.23  Aligned_cols=146  Identities=25%  Similarity=0.348  Sum_probs=112.2

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||++.. .+|+.||+|++.............+..|+++                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999965 5789999999976433222223344444443                                


Q ss_pred             -------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 -------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                         ++.|++.||.|||+ .   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-----  152 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT-----  152 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc-----
Confidence                               34489999999996 7   9999999999999999999999999998753221110     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||...+..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~  199 (325)
T cd05594         153 --------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  199 (325)
T ss_pred             --------cccccCCcccCC--------------HHHHccCCCCCccccccccceeeeeccCCCCCCCC
Confidence                    122468999999              55566666789999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.94  E-value=2.8e-26  Score=198.64  Aligned_cols=146  Identities=27%  Similarity=0.403  Sum_probs=110.6

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||+|... +|+.||+|.++...............|..+                                
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999664 688999999875422111112222333222                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|++|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNR-----  152 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCc-----
Confidence                                344899999999999   9999999999999999999999999997643211110     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||...+..++.++|+||+||++|||++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~  199 (316)
T cd05620         153 --------ASTFCGTPDYIA--------------PEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD  199 (316)
T ss_pred             --------eeccCCCcCccC--------------HHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence                    123468999999              56666666789999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.1e-26  Score=198.91  Aligned_cols=152  Identities=24%  Similarity=0.317  Sum_probs=117.0

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ....++|++.+.||.|+||.||+|.. .+++.||||++....... ...+.+.+|+.+                      
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07878          11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSL-IHARRTYRELRLLKHMKHENVIGLLDVFTPATSI   89 (343)
T ss_pred             hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhh-HHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Confidence            34578999999999999999999965 578899999987532211 111222233222                      


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~  166 (343)
T cd07878          90 ENFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLAR  166 (343)
T ss_pred             cccCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCccce
Confidence                                             445899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ......                ....|+..|+|||+              ..+ ..++.++||||+||++|+|++|+.||
T Consensus       167 ~~~~~~----------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~el~~g~~pf  216 (343)
T cd07878         167 QADDEM----------------TGYVATRWYRAPEI--------------MLNWMHYNQTVDIWSVGCIMAELLKGKALF  216 (343)
T ss_pred             ecCCCc----------------CCccccccccCchH--------------hcCCccCCchhhhHhHHHHHHHHHHCCCCC
Confidence            543211                12357889999554              433 23688999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       217 ~~~  219 (343)
T cd07878         217 PGN  219 (343)
T ss_pred             CCC
Confidence            753

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.94  E-value=9.4e-27  Score=202.52  Aligned_cols=159  Identities=25%  Similarity=0.362  Sum_probs=120.1

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++.. .+++.||+|+++..........+.+..|+.+                          
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4799999999999999999965 4789999999976433222223344444433                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.||.|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  157 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM  157 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCCCCc
Confidence                                      334899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..            .....||..|+|||++......        ....++.++|+|||||++|+|++|+.||...
T Consensus       158 ~~------------~~~~~gt~~y~aPE~~~~~~~~--------~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  212 (330)
T cd05601         158 VN------------SKLPVGTPDYIAPEVLTTMNGD--------GKGTYGVECDWWSLGVIAYEMIYGRSPFHEG  212 (330)
T ss_pred             ee------------eecccCCccccCHHHhcccccc--------ccCCCCCcceeecccceeeeeccCCCCCCCC
Confidence            10            1123588999997766432110        1334688999999999999999999999753

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.94  E-value=3.1e-26  Score=199.00  Aligned_cols=146  Identities=28%  Similarity=0.367  Sum_probs=110.1

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH----------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA----------------------------------   96 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~----------------------------------   96 (257)
                      +.||+|+||.||+|... +++.||+|++.............+..|.                                  
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999654 6788999998653221111112222221                                  


Q ss_pred             ------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           97 ------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        97 ------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                        ..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~-----  152 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGT-----  152 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCC-----
Confidence                              11445899999999999   9999999999999999999999999998743221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||+.|+|              ||.+.+..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         153 --------TSTFCGTPEYLA--------------PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             --------cccccCCccccC--------------HHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence                    123468999999              55566666789999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=7.2e-26  Score=194.04  Aligned_cols=108  Identities=24%  Similarity=0.363  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccch
Q 039073           98 VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY  177 (257)
Q Consensus        98 ~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  177 (257)
                      .++.|++.|++|||+.   +++||||||+||+++.++.++|+|||+++...........      .........||+.|+
T Consensus       130 ~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~------~~~~~~~~~gt~~y~  200 (294)
T PHA02882        130 NIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEY------SKEQKDLHRGTLYYA  200 (294)
T ss_pred             HHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCccccc------ccccccccCCCcccc
Confidence            3567999999999999   9999999999999999999999999998866432211100      000112246899999


Q ss_pred             hhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       178 ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      |              ||...+..++.++||||+||++|||++|+.||.+.+
T Consensus       201 a--------------pe~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~  237 (294)
T PHA02882        201 G--------------LDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFG  237 (294)
T ss_pred             C--------------HHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            9              666667778999999999999999999999998763

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.94  E-value=2.7e-26  Score=199.23  Aligned_cols=146  Identities=29%  Similarity=0.391  Sum_probs=110.8

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH---------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH---------------------------------   97 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~---------------------------------   97 (257)
                      +.||+|+||+||+|... +|+.||+|++.............+..|..                                 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999664 79999999987543222111222222221                                 


Q ss_pred             -------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           98 -------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        98 -------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                         .++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKT-----  152 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCc-----
Confidence                               1345899999999999   9999999999999999999999999998643221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||+.|+|              ||...+..++.++|+|||||++|+|++|+.||...
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  199 (323)
T cd05575         153 --------TSTFCGTPEYLA--------------PEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (323)
T ss_pred             --------cccccCChhhcC--------------hhhhcCCCCCccccccccchhhhhhhcCCCCCCCC
Confidence                    123468999999              55555666788999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.94  E-value=3.2e-26  Score=198.49  Aligned_cols=146  Identities=27%  Similarity=0.367  Sum_probs=110.3

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH---------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH---------------------------------   97 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~---------------------------------   97 (257)
                      +.||+|+||+||+|... +++.||+|++.............+..|..                                 
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999664 68899999986543222111222222221                                 


Q ss_pred             -------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           98 -------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        98 -------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                         .++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEET-----  152 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCc-----
Confidence                               1445899999999999   9999999999999999999999999998743211111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....|++.|+|              ||...+..++.++|+|||||++|||++|+.||...
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (321)
T cd05603         153 --------TSTFCGTPEYLA--------------PEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (321)
T ss_pred             --------cccccCCcccCC--------------HHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC
Confidence                    122468899999              55555556788999999999999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.94  E-value=9.7e-26  Score=214.49  Aligned_cols=165  Identities=28%  Similarity=0.455  Sum_probs=122.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||+|++...........+.+.+|+.+                         
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLV   80 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYT   80 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEE
Confidence            368999999999999999999654 689999999875433333333444444443                         


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                           +..|++.||+|||+.   +++||||||+||+++.++.++|+||
T Consensus        81 MEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDF  157 (932)
T PRK13184         81 MPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDW  157 (932)
T ss_pred             EEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEec
Confidence                                                 234789999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCC-----CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          142 GTARLLHVDSSNR-----PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       142 g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      |++..........     .................||+.|+|              ||...+..++.++|+||+||++||
T Consensus       158 GLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmA--------------PE~l~g~~~S~kSDIWSLGVILyE  223 (932)
T PRK13184        158 GAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMA--------------PERLLGVPASESTDIYALGVILYQ  223 (932)
T ss_pred             CcceecccccccccccccccccccccccccCCCCCCCCCCCC--------------HHHhcCCCCCcHhHHHHHHHHHHH
Confidence            9998663221100     000000011111233568999999              666666667899999999999999


Q ss_pred             HHhCCCCCcc
Q 039073          217 VLMGTHPGEL  226 (257)
Q Consensus       217 ll~G~~Pf~~  226 (257)
                      |++|+.||..
T Consensus       224 LLTG~~PF~~  233 (932)
T PRK13184        224 MLTLSFPYRR  233 (932)
T ss_pred             HHHCCCCCCC
Confidence            9999999975

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.94  E-value=2.5e-26  Score=199.51  Aligned_cols=146  Identities=31%  Similarity=0.403  Sum_probs=111.0

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|.. .+|+.||+|++.............+..|...                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999999965 4789999999875422221222233333221                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~-----  152 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT-----  152 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCC-----
Confidence                                344899999999999   9999999999999999999999999998643211111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....|+..|+|              ||.+.+..++.++|+||+||++|+|++|+.||...
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (325)
T cd05604         153 --------TTTFCGTPEYLA--------------PEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR  199 (325)
T ss_pred             --------cccccCChhhCC--------------HHHHcCCCCCCcCccccccceehhhhcCCCCCCCC
Confidence                    123468999999              56666666788999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.93  E-value=8.7e-26  Score=203.97  Aligned_cols=154  Identities=26%  Similarity=0.372  Sum_probs=114.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHH----------------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAF----------------------------------   88 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~----------------------------------   88 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++..........                                  
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEE
Confidence            456899999999999999999965 468899999875321100000                                  


Q ss_pred             -------------HHHH--------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccc
Q 039073           89 -------------VKSF--------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARL  146 (257)
Q Consensus        89 -------------~~~~--------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~  146 (257)
                                   ....        ..++..++.|++.||.|||++   +|+||||||+||+++.++ .++|+|||+++.
T Consensus       144 lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~~  220 (440)
T PTZ00036        144 VVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAKN  220 (440)
T ss_pred             EEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccchh
Confidence                         0000        012334566999999999999   999999999999999665 699999999986


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .......              ....||+.|+|||+              +.+. .++.++|+||+||++|||++|++||.
T Consensus       221 ~~~~~~~--------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwSlGvil~elltG~~pf~  272 (440)
T PTZ00036        221 LLAGQRS--------------VSYICSRFYRAPEL--------------MLGATNYTTHIDLWSLGCIIAEMILGYPIFS  272 (440)
T ss_pred             ccCCCCc--------------ccCCCCcCccCHHH--------------hcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            5422211              12357889999554              4332 36889999999999999999999998


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +.+
T Consensus       273 ~~~  275 (440)
T PTZ00036        273 GQS  275 (440)
T ss_pred             CCC
Confidence            643

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=5.9e-26  Score=194.01  Aligned_cols=171  Identities=26%  Similarity=0.323  Sum_probs=131.6

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      ....++|++++.||.|..|+||+++.. ++..+|+|++.+............+.|.++|+.                   
T Consensus        73 ~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~  152 (459)
T KOG0610|consen   73 SLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYS  152 (459)
T ss_pred             ccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecccee
Confidence            344678999999999999999999775 568999999988766655556666777766443                   


Q ss_pred             ----------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          102 ----------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       102 ----------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                        +|+-||+|||-+   ||+.|||||||||+.++|++-|+||-++...
T Consensus       153 cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  153 CLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             EEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccC
Confidence                                              799999999999   9999999999999999999999999987654


Q ss_pred             ccCCCCC--------------------Ccccc-----c------------------cCCCcccccccccccchhhhHhhh
Q 039073          148 HVDSSNR--------------------PYEWA-----L------------------TDTLPQVNKIIGCISYYALWFYFQ  184 (257)
Q Consensus       148 ~~~~~~~--------------------~~~~~-----~------------------~~~~~~~~~~~gt~~y~ape~~~~  184 (257)
                      ....+..                    .....     .                  ..+--.-+...||--|+|      
T Consensus       230 ~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlA------  303 (459)
T KOG0610|consen  230 PVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLA------  303 (459)
T ss_pred             CCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCcccccccccccccc------
Confidence            3211000                    00000     0                  000001234568888999      


Q ss_pred             cCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          185 RHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       185 ~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                              ||++.|...+..+|+|+||+++|||+.|..||.|.++
T Consensus       304 --------PEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~  340 (459)
T KOG0610|consen  304 --------PEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNN  340 (459)
T ss_pred             --------ceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCc
Confidence                    8899999999999999999999999999999998643

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=8.6e-26  Score=192.58  Aligned_cols=150  Identities=25%  Similarity=0.382  Sum_probs=116.4

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||++.. .+++.||+|++.............+.+|+.+                           
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            488899999999999999965 4789999999875432222222233344443                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||+.   +++|+||+|+||++++++.++|+|||++........
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET  157 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc
Confidence                                      334899999999999   999999999999999999999999999876432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    .....|+..|+|              ||...+..++.++|+||+|+++|++++|+.||.+.
T Consensus       158 --------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~  204 (285)
T cd05605         158 --------------IRGRVGTVGYMA--------------PEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQR  204 (285)
T ss_pred             --------------cccccCCCCccC--------------cHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCC
Confidence                          012357889999              55555556788999999999999999999999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.93  E-value=6.8e-26  Score=196.25  Aligned_cols=146  Identities=28%  Similarity=0.416  Sum_probs=110.3

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|... +++.||||+++...............|..+                                
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999664 688999999875422111111222222222                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK-----  152 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc-----
Confidence                                445899999999999   9999999999999999999999999998643211110     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|              ||.+.+..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (316)
T cd05619         153 --------TCTFCGTPDYIA--------------PEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH  199 (316)
T ss_pred             --------eeeecCCccccC--------------HHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence                    123468899999              56666666789999999999999999999999753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.93  E-value=6.8e-26  Score=197.64  Aligned_cols=100  Identities=30%  Similarity=0.423  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhh
Q 039073          100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL  179 (257)
Q Consensus       100 ~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  179 (257)
                      +.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...........           .....++..|+| 
T Consensus       180 ~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~-----------~~~~~~~~~y~a-  244 (338)
T cd05102         180 SFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR-----------KGSARLPLKWMA-  244 (338)
T ss_pred             HHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhc-----------ccCCCCCccccC-
Confidence            45899999999999   999999999999999999999999999875432211000           011234678999 


Q ss_pred             hHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       180 e~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                   ||.+.+..++.++|||||||++|||++ |..||.+.
T Consensus       245 -------------PE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~  280 (338)
T cd05102         245 -------------PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  280 (338)
T ss_pred             -------------cHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCC
Confidence                         555556667899999999999999997 99999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.6e-26  Score=200.90  Aligned_cols=166  Identities=20%  Similarity=0.354  Sum_probs=130.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..-|++++.||+|.|++|-+|++ -+|.+||||++.+.+..... ...+.+|++.                         
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~s-t~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLi   95 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLS-TGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLI   95 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhh-hhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEE
Confidence            34588999999999999999954 58999999999988766543 2344455543                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE-cCCCCeEEeeccCccccccC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL-DSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill-~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                 +..||+.|+.|||..   .++||||||+|+++ ..-|-+||.|||++..+.+.
T Consensus        96 LELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG  172 (864)
T KOG4717|consen   96 LELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPG  172 (864)
T ss_pred             EEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCc
Confidence                                       334899999999988   99999999999876 56688999999998776544


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCC-CccchhhHHHHHHHHHhCCCCCccccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVT-EKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~-~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      ..              ++..||+..|.|              ||++.|-.|+ +.+||||+|++||-+++|++||+..++
T Consensus       173 ~k--------------L~TsCGSLAYSA--------------PEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAND  224 (864)
T KOG4717|consen  173 KK--------------LTTSCGSLAYSA--------------PEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAND  224 (864)
T ss_pred             ch--------------hhcccchhhccC--------------chhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccc
Confidence            32              244689999999              5666666564 689999999999999999999996543


Q ss_pred             ccCCCCCcchhhhhhcccCC
Q 039073          230 LSSSSGPKIMLIDVLDQRLS  249 (257)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~l~  249 (257)
                             -+.+.+|+|=++.
T Consensus       225 -------SETLTmImDCKYt  237 (864)
T KOG4717|consen  225 -------SETLTMIMDCKYT  237 (864)
T ss_pred             -------hhhhhhhhccccc
Confidence                   3355667776654

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.93  E-value=7.9e-26  Score=195.90  Aligned_cols=146  Identities=27%  Similarity=0.376  Sum_probs=111.7

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||+||+|... +++.||+|+++............+..|.++                                
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999664 688999999975432222223333333333                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          +..|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.........     
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-----  152 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT-----  152 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc-----
Confidence                                334899999999999   9999999999999999999999999998643211111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....|+..|+|              ||...+..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~  199 (318)
T cd05570         153 --------TSTFCGTPDYIA--------------PEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD  199 (318)
T ss_pred             --------ccceecCccccC--------------HHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence                    112458889999              56666666789999999999999999999999754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-26  Score=191.36  Aligned_cols=181  Identities=22%  Similarity=0.367  Sum_probs=143.0

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++++.||+|++++|..+++ ++.++||+|++++.-..+.+.+...+.|..+                       
T Consensus       247 l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrl  326 (593)
T KOG0695|consen  247 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRL  326 (593)
T ss_pred             cccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceE
Confidence            3468899999999999999999965 5799999999987655544444444444443                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+|.-||.|||++   ||+.||||-.|+++|+.|++||+|||+++..-.
T Consensus       327 ffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~l~  403 (593)
T KOG0695|consen  327 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             EEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcCCC
Confidence                                         333699999999999   999999999999999999999999999987544


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      +....             ...+||+.|.|              ||.+.+..|+..+|+|++|++++||+.|+.||+....
T Consensus       404 ~gd~t-------------stfcgtpnyia--------------peilrgeeygfsvdwwalgvlmfemmagrspfdivgm  456 (593)
T KOG0695|consen  404 PGDTT-------------STFCGTPNYIA--------------PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGM  456 (593)
T ss_pred             CCccc-------------ccccCCCcccc--------------hhhhcccccCceehHHHHHHHHHHHHcCCCCcceecC
Confidence            33322             23689999999              8888888899999999999999999999999997663


Q ss_pred             ccCCCCC-cchhhhhhcccCCCCCC
Q 039073          230 LSSSSGP-KIMLIDVLDQRLSPPVN  253 (257)
Q Consensus       230 ~~~~~~~-~~~~~~i~~~~l~~~~~  253 (257)
                      -..+.+. +.-++-|+...|+.|.+
T Consensus       457 ~n~d~ntedylfqvilekqiriprs  481 (593)
T KOG0695|consen  457 DNPDMNTEDYLFQVILEKQIRIPRS  481 (593)
T ss_pred             CCcccchhHHHHHHHhhhcccccce
Confidence            3333333 33346667777776654

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.93  E-value=8.1e-26  Score=196.24  Aligned_cols=146  Identities=26%  Similarity=0.422  Sum_probs=110.7

Q ss_pred             eeeeecCceeEEEEEe----CCCCEEEEEEcCccccc-cHHHHHHHHHHHHH----------------------------
Q 039073           52 YCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETE-DSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~----------------------------   98 (257)
                      +.||+|+||.||++..    .+++.||+|+++..... .......+..|+.+                            
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            6799999999999964    35889999998753221 11112233344433                            


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........  
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--  156 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTV--  156 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCc--
Confidence                                   334899999999999   9999999999999999999999999998643221111  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                 .....|+..|+|              ||...+..++.++|+||+||++|||++|+.||...
T Consensus       157 -----------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~  203 (323)
T cd05584         157 -----------THTFCGTIEYMA--------------PEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE  203 (323)
T ss_pred             -----------ccccCCCccccC--------------hhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC
Confidence                       122468999999              55555555688999999999999999999999754

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-27  Score=209.61  Aligned_cols=158  Identities=29%  Similarity=0.439  Sum_probs=125.0

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHH-----------------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE-----------------------   95 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e-----------------------   95 (257)
                      +.|..+++...-++.||.|+.|-||+|+.. +..||||+++..+..+...+..+..+                       
T Consensus       117 e~WeiPFe~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa  195 (904)
T KOG4721|consen  117 ELWEIPFEEISELEWLGSGAQGAVFLGRLH-NETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCA  195 (904)
T ss_pred             hhccCCHHHhhhhhhhccCcccceeeeecc-CceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccc
Confidence            456666666677889999999999999885 56699999976543332222211110                       


Q ss_pred             ------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           96 ------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        96 ------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                        ......+|+.|+.|||.+   .|+|||||..||||..+..+||+|||.++......+.    
T Consensus       196 ~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STk----  268 (904)
T KOG4721|consen  196 QGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTK----  268 (904)
T ss_pred             cccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhh----
Confidence                              011345899999999999   9999999999999999999999999998876544322    


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                ....||..|||              ||++...+.+.++|||||||+||||+||..||..+.
T Consensus       269 ----------MSFaGTVaWMA--------------PEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVd  315 (904)
T KOG4721|consen  269 ----------MSFAGTVAWMA--------------PEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVD  315 (904)
T ss_pred             ----------hhhhhhHhhhC--------------HHHhhcCCcccccceehhHHHHHHHHhcCCCccccc
Confidence                      34689999999              788888889999999999999999999999998654

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.93  E-value=1.1e-25  Score=191.55  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=111.4

Q ss_pred             eeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||+|+||+||++.. .+++.||+|++...........+.+..|+.+                                  
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            68999999999965 4788999999875433322222334444443                                  


Q ss_pred             ---------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           99 ---------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        99 ---------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                           +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........    
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~----  153 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK----  153 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc----
Confidence                                 334899999999999   9999999999999999999999999998755322111    


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                               .....|+..|+|              ||...+..++.++|+||+||++|+|++|+.||...
T Consensus       154 ---------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  200 (280)
T cd05608         154 ---------TKGYAGTPGFMA--------------PELLQGEEYDFSVDYFALGVTLYEMIAARGPFRAR  200 (280)
T ss_pred             ---------ccccCCCcCccC--------------HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                     122457889999              66666666788999999999999999999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.93  E-value=1.9e-25  Score=197.59  Aligned_cols=152  Identities=28%  Similarity=0.349  Sum_probs=114.6

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||++.. .+++.||||++...... ....+.+.+|+++                           
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   79 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQN-LVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEI   79 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccc-hHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceE
Confidence            588999999999999999965 47899999998643211 1112233333332                           


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..|++.||.|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        80 ~lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~  156 (372)
T cd07853          80 YVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             EEEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeecccC
Confidence                                        345899999999999   9999999999999999999999999998765322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....            .....++..|+|||++              .+. .++.++|+||+||++|||++|+.||.+..
T Consensus       157 ~~~~------------~~~~~~~~~y~aPE~~--------------~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  209 (372)
T cd07853         157 ESKH------------MTQEVVTQYYRAPEIL--------------MGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS  209 (372)
T ss_pred             cccc------------CCCCCcCCCcCCHHHH--------------cCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC
Confidence            1110            1123567889995544              332 25789999999999999999999997643

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.93  E-value=8.6e-26  Score=208.21  Aligned_cols=167  Identities=22%  Similarity=0.327  Sum_probs=126.8

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCC-CCEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      .....++++.+.|.+|+|+.||.|.... |..||+|++...   ++...+...+|++++..                   
T Consensus        33 ~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~---de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~  109 (738)
T KOG1989|consen   33 TVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN---DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRS  109 (738)
T ss_pred             EECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC---CHHHHHHHHHHHHHHHHhcCCCceeeEecccccccc
Confidence            3446678999999999999999997655 499999999754   44446677777776433                   


Q ss_pred             ------------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEe
Q 039073          102 ------------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVA  139 (257)
Q Consensus       102 ------------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~  139 (257)
                                                                ++++|+++||.. .+.|+|||||-||+||..++..|||
T Consensus       110 ~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLC  188 (738)
T KOG1989|consen  110 SNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLC  188 (738)
T ss_pred             CCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeC
Confidence                                                      799999999988 6669999999999999999999999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||.+.................+.+.    ..-|+.|.+||+           ...-.+.++++|+|||+|||+||-|+.
T Consensus       189 DFGSatt~~~~~~~~~e~~~ve~eI~----k~TTp~YRsPEM-----------IDlysg~pI~eKsDIWALGclLYkLCy  253 (738)
T KOG1989|consen  189 DFGSATTKILSPTSAQEVNYVEEEIE----KYTTPQYRSPEM-----------IDLYSGLPIGEKSDIWALGCLLYKLCY  253 (738)
T ss_pred             cccccccccCCCccHHHHHHHHHHHH----hhCCccccChHH-----------HhhhcCCCCcchhHHHHHHHHHHHHHH
Confidence            99987754332211111001111110    123788999887           345567779999999999999999999


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      ...||+.-
T Consensus       254 ~t~PFe~s  261 (738)
T KOG1989|consen  254 FTTPFEES  261 (738)
T ss_pred             hCCCcCcC
Confidence            99999864

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-25  Score=194.50  Aligned_cols=185  Identities=28%  Similarity=0.425  Sum_probs=135.4

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ....++.+.+|+|.||+||+|+.. ++.||||++....      .+.|++|.++                          
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~~------kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~  281 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQE------KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRM  281 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhcc-CceeEEEecCHHH------HHHHHhHHHHHhccCccchhHHHhhchhccCCcccc
Confidence            445567788999999999999885 5889999996432      3455555554                          


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCC------CCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDC------TLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~------~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                    ++..++.||+|||+..      .+.|+|||||..|||+.++.++.|+|||
T Consensus       282 eywLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFG  361 (534)
T KOG3653|consen  282 EYWLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFG  361 (534)
T ss_pred             ceeEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccc
Confidence                                          4457999999999653      4679999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++..+........       +    ....||.+|||||++-+.-+++.  ++.+      .+.||||+|.++||+++...
T Consensus       362 LAl~~~p~~~~~d-------~----~~qVGT~RYMAPEvLEgainl~d--~~Af------kr~DvYamgLVLWEi~SRC~  422 (534)
T KOG3653|consen  362 LALRLEPGKPQGD-------T----HGQVGTRRYMAPEVLEGAINLQD--RDAF------KRIDVYAMGLVLWEIASRCT  422 (534)
T ss_pred             eeEEecCCCCCcc-------h----hhhhhhhhhcCHHHHhhhccccc--HHHH------HHHHHHHHHHHHHHHHhhcc
Confidence            9988764332211       1    23579999999998877766653  2222      37899999999999998643


Q ss_pred             CCc--------c--cccccCCCCCcchhhhhhcccCCCCCCCC
Q 039073          223 PGE--------L--LSSLSSSSGPKIMLIDVLDQRLSPPVNQK  255 (257)
Q Consensus       223 Pf~--------~--~~~~~~~~~~~~~~~~i~~~~l~~~~~~~  255 (257)
                      -++        .  .+.+..++-..+.-.-++..|.||.+|..
T Consensus       423 ~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~  465 (534)
T KOG3653|consen  423 DADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDA  465 (534)
T ss_pred             cccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhh
Confidence            332        1  12345555455555566788888877653

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.93  E-value=3.1e-25  Score=191.83  Aligned_cols=153  Identities=29%  Similarity=0.499  Sum_probs=114.8

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCC----EEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGK----VVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ..+|++.+.||+|+||.||+|.+. ++.    .||+|+++....  ....+.+..|+.+                     
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~   83 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTSTV   83 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCc
Confidence            456999999999999999999643 343    489999864322  1223344444433                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++....
T Consensus        84 ~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~  160 (316)
T cd05108          84 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  160 (316)
T ss_pred             eeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcccccccccc
Confidence                                          344899999999999   99999999999999999999999999998664


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....++..|++              ||...+..++.++|+||||+++||+++ |+.||++.
T Consensus       161 ~~~~~~~-----------~~~~~~~~~y~a--------------pE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~  215 (316)
T cd05108         161 ADEKEYH-----------AEGGKVPIKWMA--------------LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  215 (316)
T ss_pred             CCCccee-----------ccCCccceeecC--------------hHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            3221100           011223567999              566666667899999999999999997 99999764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.93  E-value=2e-25  Score=190.04  Aligned_cols=150  Identities=28%  Similarity=0.404  Sum_probs=113.1

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH---HH------HHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS---AF------VKSFQ-----------------------   93 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~---~~------~~~~~-----------------------   93 (257)
                      +|++.+.||+|+||.||+|.. .+++.||+|.++.......   ..      .+.+.                       
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            588999999999999999965 4789999998864321110   00      00000                       


Q ss_pred             ---------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           94 ---------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        94 ---------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                 .++..++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++..
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCcccc
Confidence                                       01222455899999999999   999999999999999999999999999875


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......              ....|+..|+|              ||...+..++.++|+||+||++|+|++|++||.+
T Consensus       158 ~~~~~~~--------------~~~~~~~~y~a--------------PE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~  209 (288)
T cd07863         158 YSCQMAL--------------TPVVVTLWYRA--------------PEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCG  209 (288)
T ss_pred             ccCcccC--------------CCccccccccC--------------chHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCC
Confidence            5322110              12356888999              5555555678999999999999999999999965


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       210 ~  210 (288)
T cd07863         210 N  210 (288)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.93  E-value=2.9e-25  Score=189.42  Aligned_cols=150  Identities=25%  Similarity=0.398  Sum_probs=116.5

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|+..+.||+|+||.||++.. .+++.||+|.+.............+..|+.+                           
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            477889999999999999955 4789999999875433322222334444443                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++........
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT  157 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc
Confidence                                      334899999999998   999999999999999999999999998865432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    .....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       158 --------------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~  204 (285)
T cd05630         158 --------------IKGRVGTVGYMA--------------PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  204 (285)
T ss_pred             --------------ccCCCCCccccC--------------hHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence                          012357889999              55565666788999999999999999999999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.93  E-value=3.1e-25  Score=189.13  Aligned_cols=149  Identities=25%  Similarity=0.377  Sum_probs=115.9

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |+..+.||.|+||+||+|.. .+++.||+|.+.............+..|+.+                            
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            67789999999999999965 4789999999875433222222334444444                            


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.|+.|||+.   +++||||+|+||+++.++.++|+|||++........ 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-  157 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES-  157 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc-
Confidence                                     334899999999999   999999999999999999999999998865432111 


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....|+..|+|              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       158 -------------~~~~~g~~~~~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~  204 (285)
T cd05632         158 -------------IRGRVGTVGYMA--------------PEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGR  204 (285)
T ss_pred             -------------ccCCCCCcCccC--------------hHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence                         012357889999              56666666788999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.93  E-value=1.6e-25  Score=196.61  Aligned_cols=155  Identities=28%  Similarity=0.439  Sum_probs=117.6

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|+..+.||+|+||.||+|.. .+++.||||++....  .......+.+|+++                        
T Consensus        72 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  149 (353)
T PLN00034         72 SLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH--EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQV  149 (353)
T ss_pred             CHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC--cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEE
Confidence            346678889999999999999965 478999999986532  22223445555554                        


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.........  
T Consensus       150 v~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~--  224 (353)
T PLN00034        150 LLEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP--  224 (353)
T ss_pred             EEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceeccccccc--
Confidence                                   344899999999999   9999999999999999999999999998765322110  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                                 .....|+..|+|||++....         ..+...+.++|||||||++|||++|+.||.
T Consensus       225 -----------~~~~~gt~~y~aPE~~~~~~---------~~~~~~~~~~DvwslGvil~el~~g~~pf~  274 (353)
T PLN00034        225 -----------CNSSVGTIAYMSPERINTDL---------NHGAYDGYAGDIWSLGVSILEFYLGRFPFG  274 (353)
T ss_pred             -----------ccccccCccccCcccccccc---------ccCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence                       12246889999977653211         112223568999999999999999999997

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.8e-26  Score=186.29  Aligned_cols=162  Identities=24%  Similarity=0.303  Sum_probs=128.5

Q ss_pred             HHHhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCcccc-----ccHHHHHHHHHHHHHH--------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSET-----EDSAFVKSFQNEAHVL--------------   99 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l--------------   99 (257)
                      +-....++|+..+.||.|..+.|.++ +.++|+.+|+|++.....     ......+.-.+|+.+|              
T Consensus        11 aa~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D   90 (411)
T KOG0599|consen   11 AAKGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQD   90 (411)
T ss_pred             hHhhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeee
Confidence            34455778889999999999999888 667899999999864321     1222334445566553              


Q ss_pred             --------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073          100 --------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus       100 --------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                            .+|+.+|++|||..   +|+||||||+||++|.+-+++|+||
T Consensus        91 ~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isDF  167 (411)
T KOG0599|consen   91 VYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISDF  167 (411)
T ss_pred             eccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEecc
Confidence                                                  33899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++........              +...|||++|+|||-+.|+-+...        ..|+..+|+||+|+++|.++.|.
T Consensus       168 GFa~~l~~Gek--------------LrelCGTPgYLAPEtikC~m~e~~--------pGYs~EVD~Wa~GVImyTLLaGc  225 (411)
T KOG0599|consen  168 GFACQLEPGEK--------------LRELCGTPGYLAPETIKCSMYENH--------PGYSKEVDEWACGVIMYTLLAGC  225 (411)
T ss_pred             ceeeccCCchh--------------HHHhcCCCcccChhheeeecccCC--------CCccchhhHHHHHHHHHHHHcCC
Confidence            99988765543              345899999999888777643221        23788999999999999999999


Q ss_pred             CCCcc
Q 039073          222 HPGEL  226 (257)
Q Consensus       222 ~Pf~~  226 (257)
                      +||-.
T Consensus       226 pPFwH  230 (411)
T KOG0599|consen  226 PPFWH  230 (411)
T ss_pred             CchhH
Confidence            99963

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=3.7e-26  Score=199.85  Aligned_cols=152  Identities=24%  Similarity=0.432  Sum_probs=127.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------------------  101 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----------------------  101 (257)
                      .++|+.++.+|+|+||.++.+++ .+++.|++|++......... ......|+.++++                      
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~-r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPE-RRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchh-hHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            57899999999999999999955 46889999999876544332 2355566665443                      


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      |++.|+.|||+.   .|+|||||+.||+++.++.++|+|||+++....
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence                                            899999999988   999999999999999999999999999998876


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             ....||+.|++              ||...+.+|+.++||||+||.+|||++-+++|.+.
T Consensus       159 ~~~~a-------------~tvvGTp~Ymc--------------PEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~  209 (426)
T KOG0589|consen  159 EDSLA-------------STVVGTPYYMC--------------PEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS  209 (426)
T ss_pred             chhhh-------------heecCCCcccC--------------HHHhCCCCCCccCcchhhcchHHHHHhcccccCcc
Confidence            54222             23679999999              78888888999999999999999999999999965

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-27  Score=188.90  Aligned_cols=153  Identities=24%  Similarity=0.363  Sum_probs=123.4

Q ss_pred             hhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ..++.|++-+.||+|.|+.|+++ +.++|+.+|+|++...+.... ..+.+.+|+++                       
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~y   86 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR-DFQKLEREARICRKLQHPNIVRLHDSIQEESFHY   86 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccc-cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeE
Confidence            34678999999999999999999 667899999998865443332 24556666655                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC---CCeEEeeccCcccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN---LEAFVADFGTARLL  147 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~---~~~~l~dfg~~~~~  147 (257)
                                                  ..+||++++.|+|.+   +|+|||+||+|+++.+.   ..+||+|||++...
T Consensus        87 lvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l  163 (355)
T KOG0033|consen   87 LVFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAIEV  163 (355)
T ss_pred             EEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEEEe
Confidence                                        234899999999999   99999999999999654   34899999999977


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....-              .....||+.|||              ||+...-+|+.++|||++|+++|-++.|++||.+.
T Consensus       164 ~~g~~--------------~~G~~GtP~fma--------------PEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~  215 (355)
T KOG0033|consen  164 NDGEA--------------WHGFAGTPGYLS--------------PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  215 (355)
T ss_pred             CCccc--------------cccccCCCcccC--------------HHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc
Confidence            62221              134679999999              67777777899999999999999999999999873

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.93  E-value=6.2e-25  Score=191.35  Aligned_cols=149  Identities=28%  Similarity=0.411  Sum_probs=118.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||.||++... ++..||+|.+....  .......+.+|++++                        
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            578999999999999999999664 68889999887542  222344566666553                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 ..|++.|+.|||+.+  +++|+||||+||+++.++.++|+|||++....... 
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-  158 (331)
T cd06649          82 MEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM-  158 (331)
T ss_pred             eecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccccc-
Confidence                                       337999999999751  69999999999999999999999999987543211 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                    .....|+..|+|              ||...+..++.++|+|||||++|||++|+.||..
T Consensus       159 --------------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         159 --------------ANSFVGTRSYMS--------------PERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             --------------cccCCCCcCcCC--------------HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence                          112457889999              5656666678999999999999999999999964

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-26  Score=180.49  Aligned_cols=172  Identities=26%  Similarity=0.398  Sum_probs=129.5

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .+..+.++......||+|++|.|-+.++ .+|+..|+|.+...-...  ..+....|+.+                    
T Consensus        40 ~~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q--~q~r~L~dldi~~r~~~CPf~V~FyGa~~re  117 (282)
T KOG0984|consen   40 NFEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQ--EQKRLLMDLDIIMRTVDCPFTVHFYGALFRE  117 (282)
T ss_pred             ccccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChH--HHHHHHHhhhhhccCCCCCeEEEeehhhhcc
Confidence            3566677778888999999999988854 579999999997643322  23444444443                    


Q ss_pred             -----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 -----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 -----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                         ++..+.+|+.|||+.  +.++|||+||.||||+.+|.+|++|||+
T Consensus       118 gdvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGI  195 (282)
T KOG0984|consen  118 GDVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGI  195 (282)
T ss_pred             ccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEccccc
Confidence                                               334699999999986  6999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.....+...              ..-.|+..|+|||..-         ||.... .|+-++||||+|+++.||++++.|
T Consensus       196 sG~L~dSiAk--------------t~daGCkpYmaPEri~---------~e~n~~-gY~vksDvWSLGItmiElA~lr~P  251 (282)
T KOG0984|consen  196 SGYLVDSIAK--------------TMDAGCKPYMAPERIN---------PELNQK-GYSVKSDVWSLGITMIEMAILRFP  251 (282)
T ss_pred             ceeehhhhHH--------------HHhcCCCccCChhhcC---------cccCcc-cceeehhhhhhhhhhhhhhhcccc
Confidence            8876543221              1235788999977654         444443 689999999999999999999999


Q ss_pred             CcccccccCCCCCcchhhhhhc
Q 039073          224 GELLSSLSSSSGPKIMLIDVLD  245 (257)
Q Consensus       224 f~~~~~~~~~~~~~~~~~~i~~  245 (257)
                      |+.-  -.    +.+.+.+++.
T Consensus       252 Y~~w--~t----pF~qLkqvVe  267 (282)
T KOG0984|consen  252 YESW--GT----PFQQLKQVVE  267 (282)
T ss_pred             cccc--CC----HHHHHHHHhc
Confidence            9842  11    4455555553

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.5e-26  Score=202.39  Aligned_cols=166  Identities=25%  Similarity=0.371  Sum_probs=128.1

Q ss_pred             cccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------------  101 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------------  101 (257)
                      .-|..++.||-|+||+|.++. ..+...||+|.+++.+.-....+...+.|..+|+.                       
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            347788999999999999994 45677899999988765555556777777777654                       


Q ss_pred             ----------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC--
Q 039073          102 ----------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS--  151 (257)
Q Consensus       102 ----------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~--  151 (257)
                                                  ++..|+++.|.+   |+|||||||+|||||.+|++||+|||++..+.=..  
T Consensus       709 dYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHds  785 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  785 (1034)
T ss_pred             eccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeeccccccceecccc
Confidence                                        588899999999   99999999999999999999999999987652000  


Q ss_pred             -------------CCCCccccccCCC--------------cccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc
Q 039073          152 -------------SNRPYEWALTDTL--------------PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK  204 (257)
Q Consensus       152 -------------~~~~~~~~~~~~~--------------~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~  204 (257)
                                   -....+|......              .....+.||..|+|              ||++....++..
T Consensus       786 kYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyia--------------pevl~r~g~~q~  851 (1034)
T KOG0608|consen  786 KYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIA--------------PEVLARTGYTQL  851 (1034)
T ss_pred             ccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccC--------------hHHhcccCcccc
Confidence                         0011112111111              11235679999999              777788888999


Q ss_pred             cchhhHHHHHHHHHhCCCCCcccc
Q 039073          205 CDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       205 ~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      +|+||.|++||||+.|++||-..+
T Consensus       852 cdwws~gvil~em~~g~~pf~~~t  875 (1034)
T KOG0608|consen  852 CDWWSVGVILYEMLVGQPPFLADT  875 (1034)
T ss_pred             chhhHhhHHHHHHhhCCCCccCCC
Confidence            999999999999999999997543

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.93  E-value=3.5e-25  Score=190.88  Aligned_cols=152  Identities=21%  Similarity=0.310  Sum_probs=114.5

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|.+.+.||+|+||.||+|... +++.||+|.++.......  ...+.+|+.+                         
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGA--PCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCc--chhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            478999999999999999999654 688899999875432111  1122233322                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        83 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  159 (309)
T cd07872          83 FEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK  159 (309)
T ss_pred             EeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCcc
Confidence                                      445899999999999   999999999999999999999999999875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....++..|+|||++...             ..++.++|+||+||++|+|++|+.||.+.
T Consensus       160 ~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~el~tg~~pf~~~  208 (309)
T cd07872         160 T-------------YSNEVVTLWYRPPDVLLGS-------------SEYSTQIDMWGVGCIFFEMASGRPLFPGS  208 (309)
T ss_pred             c-------------cccccccccccCCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1             0123467889995544321             23578999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.93  E-value=9.6e-25  Score=185.40  Aligned_cols=148  Identities=24%  Similarity=0.405  Sum_probs=118.2

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|.. .+++.||+|.+.....  ....+.+..|+.+                          
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDIT--VELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT   78 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCC--hHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence            4688999999999999999954 5788999999865422  2223445556554                          


Q ss_pred             ---------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           99 ---------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        99 ---------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                           ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.......      
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~------  149 (279)
T cd06619          79 EFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI------  149 (279)
T ss_pred             ecCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc------
Confidence                                 334899999999999   99999999999999999999999999987543211      


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                               .....|+..|+|              ||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       150 ---------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  196 (279)
T cd06619         150 ---------AKTYVGTNAYMA--------------PERISGEQYGIHSDVWSLGISFMELALGRFPYPQI  196 (279)
T ss_pred             ---------ccCCCCChhhcC--------------ceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhh
Confidence                     112457889999              66666666789999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-25  Score=195.43  Aligned_cols=156  Identities=27%  Similarity=0.408  Sum_probs=127.4

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH---------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL---------------------   99 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------------------   99 (257)
                      ....+.|++.+.||.|.||.||++.. .+|+.+|+|.+.+.............+|+.++                     
T Consensus        31 ~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~  110 (382)
T KOG0032|consen   31 EDIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDS  110 (382)
T ss_pred             ccccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCe
Confidence            34466799999999999999999955 46999999999876654333344556666653                     


Q ss_pred             ------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC----CCeEEeeccCcc
Q 039073          100 ------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSN----LEAFVADFGTAR  145 (257)
Q Consensus       100 ------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~----~~~~l~dfg~~~  145 (257)
                                                    ..|++.++.|||+.   |++||||||+|+++...    +.++++|||++.
T Consensus       111 ~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~  187 (382)
T KOG0032|consen  111 VYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAK  187 (382)
T ss_pred             EEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCCce
Confidence                                          33899999999998   99999999999999644    469999999999


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .......              ....+||+.|+|              ||+....+|+..+|+||+|+++|.|++|.+||.
T Consensus       188 ~~~~~~~--------------~~~~~Gtp~y~A--------------PEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~  239 (382)
T KOG0032|consen  188 FIKPGER--------------LHTIVGTPEYVA--------------PEVLGGRPYGDEVDVWSIGVILYILLSGVPPFW  239 (382)
T ss_pred             EccCCce--------------EeeecCCccccC--------------chhhcCCCCCcccchhHHHHHHHHHhhCCCCCc
Confidence            8765211              245789999999              667776778999999999999999999999999


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +.+
T Consensus       240 ~~~  242 (382)
T KOG0032|consen  240 GET  242 (382)
T ss_pred             CCC
Confidence            765

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.92  E-value=7e-25  Score=189.48  Aligned_cols=150  Identities=23%  Similarity=0.338  Sum_probs=108.3

Q ss_pred             ceeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHH-----------------------------------
Q 039073           51 KYCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSF-----------------------------------   92 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~-----------------------------------   92 (257)
                      .+.||+|+||.||+|...   +++.||+|.+........ ...+.                                   
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~-~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMS-ACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHH-HHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC
Confidence            468999999999999653   567899998864321110 00000                                   


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE----cCCCCeEEeeccCccc
Q 039073           93 ----------------------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL----DSNLEAFVADFGTARL  146 (257)
Q Consensus        93 ----------------------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill----~~~~~~~l~dfg~~~~  146 (257)
                                            ..++..+..|++.|+.|||++   +++||||||+||++    +.++.++|+|||++..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence                                  012334567999999999999   99999999999999    4567899999999976


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........          .......||+.|+|||+              +.+. .++.++|+||+||++|+|++|++||.
T Consensus       162 ~~~~~~~~----------~~~~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         162 FNSPLKPL----------ADLDPVVVTFWYRAPEL--------------LLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCCCCccc----------cccCCccccccccCCHH--------------HcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence            54322110          01123567899999554              4432 35889999999999999999999997


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +.+
T Consensus       218 ~~~  220 (317)
T cd07868         218 CRQ  220 (317)
T ss_pred             CCc
Confidence            543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=9.7e-26  Score=196.21  Aligned_cols=145  Identities=28%  Similarity=0.384  Sum_probs=106.5

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHH-------------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNE-------------------------------------   95 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e-------------------------------------   95 (257)
                      ||+|+||+||+|... +++.||+|++................|                                     
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            689999999999654 689999999864322111111111111                                     


Q ss_pred             -----------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           96 -----------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        96 -----------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                       +..+..|++.|++|||++   +++||||||+||+++.++.++|+|||++.........     
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~-----  152 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT-----  152 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC-----
Confidence                             122445899999999999   9999999999999999999999999998653221111     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....||..|+|||++...             ..++.++|+||+||++|+|++|+.||.+.
T Consensus       153 --------~~~~~gt~~y~aPE~~~~~-------------~~~~~~~DvwslGvil~elltG~~Pf~~~  200 (330)
T cd05586         153 --------TNTFCGTTEYLAPEVLLDE-------------KGYTKHVDFWSLGVLVFEMCCGWSPFYAE  200 (330)
T ss_pred             --------ccCccCCccccCHHHHcCC-------------CCCCCccceeccccEEEEeccCCCCCCCC
Confidence                    1234689999995554321             12578999999999999999999999753

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PHA02988 hypothetical protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=184.60  Aligned_cols=159  Identities=20%  Similarity=0.252  Sum_probs=120.4

Q ss_pred             CCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHH------------
Q 039073           33 DGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------  100 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~------------  100 (257)
                      ...++.+++     +..-...+++|++|.||+|.. +|+.||||+++..........+.+.+|+.++.            
T Consensus        12 ~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g   85 (283)
T PHA02988         12 IKCIESDDI-----DKYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYG   85 (283)
T ss_pred             ceecCHHHc-----CCCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEee
Confidence            344555555     233336799999999999987 68899999998765555444566667766532            


Q ss_pred             -------------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073          101 -------------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus       101 -------------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                                 .+++.|+.|||+..  +++||||||+||+++.++.++
T Consensus        86 ~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~k  163 (283)
T PHA02988         86 FIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLK  163 (283)
T ss_pred             eEEecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEE
Confidence                                                       37999999999731  788999999999999999999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      ++|||++.......                ....|+..|+|||++...            ...++.++|||||||++|||
T Consensus       164 l~dfg~~~~~~~~~----------------~~~~~~~~y~aPE~~~~~------------~~~~~~k~Di~SlGvil~el  215 (283)
T PHA02988        164 IICHGLEKILSSPP----------------FKNVNFMVYFSYKMLNDI------------FSEYTIKDDIYSLGVVLWEI  215 (283)
T ss_pred             EcccchHhhhcccc----------------ccccCcccccCHHHhhhc------------cccccchhhhhHHHHHHHHH
Confidence            99999987543211                113578889995554321            13468999999999999999


Q ss_pred             HhCCCCCccc
Q 039073          218 LMGTHPGELL  227 (257)
Q Consensus       218 l~G~~Pf~~~  227 (257)
                      ++|+.||...
T Consensus       216 ~~g~~Pf~~~  225 (283)
T PHA02988        216 FTGKIPFENL  225 (283)
T ss_pred             HHCCCCCCCC
Confidence            9999999865

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-25  Score=180.86  Aligned_cols=168  Identities=24%  Similarity=0.351  Sum_probs=125.2

Q ss_pred             HHHhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .+..+.++|.+.+.||+|+|+.||.++ ..++..||+|++......   ..+..++|++.                    
T Consensus        15 tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~---~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~   91 (302)
T KOG2345|consen   15 TVIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQE---DIEEALREIDNHRKFNSPNVLRLVDHQLREE   91 (302)
T ss_pred             cEEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchH---HHHHHHHHHHHHHhhCCcchHHHHHHHHHhh
Confidence            345677899999999999999999995 567889999999765422   23444455443                    


Q ss_pred             ----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEE
Q 039073           99 ----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV  138 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l  138 (257)
                                                              +..++++||.+||+. .+...||||||.||++...+.+.+
T Consensus        92 ~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl  170 (302)
T KOG2345|consen   92 KDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVL  170 (302)
T ss_pred             ccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEE
Confidence                                                    223799999999988 334999999999999999999999


Q ss_pred             eeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH
Q 039073          139 ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL  218 (257)
Q Consensus       139 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell  218 (257)
                      .|||.+...+...........    ++.-.....|..|.|||++.+..+           ..+++++|||||||++|+|+
T Consensus       171 ~D~GS~~~a~i~i~~~~~a~~----lQe~a~e~Ct~pyRAPELf~vk~~-----------~ti~ertDIWSLGCtLYa~m  235 (302)
T KOG2345|consen  171 MDLGSATQAPIQIEGSRQALR----LQEWAEERCTIPYRAPELFNVKSH-----------CTITERTDIWSLGCTLYAMM  235 (302)
T ss_pred             EeccCccccceEeechHHHHH----HHHHHHHhCCCcccCchheecccC-----------cccccccchhhhhHHHHHHH
Confidence            999998866533222111100    111112345888999888654433           33689999999999999999


Q ss_pred             hCCCCCcc
Q 039073          219 MGTHPGEL  226 (257)
Q Consensus       219 ~G~~Pf~~  226 (257)
                      .|..||+.
T Consensus       236 f~~sPfe~  243 (302)
T KOG2345|consen  236 FGESPFER  243 (302)
T ss_pred             HcCCcchH
Confidence            99999984

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=9.7e-25  Score=188.00  Aligned_cols=184  Identities=26%  Similarity=0.363  Sum_probs=134.9

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ...-.+.+.||+|.||+||+|.+. |..||||++....      ..++.+|.++                          
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd------E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~T  282 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD------ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWT  282 (513)
T ss_pred             hheeEEEEEecCccccceeecccc-CCceEEEEecccc------hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceE
Confidence            445678899999999999999985 7789999997533      2455666655                          


Q ss_pred             ------------------------------HHHHHHHHHHHHhh-----CCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 ------------------------------LSTSVAHALSYLHH-----DCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~-----~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                    |+..++.||++||.     +..+.|.|||||..|||+.+++.|.|+|+|+
T Consensus       283 QLwLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGL  362 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  362 (513)
T ss_pred             EEEEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeecee
Confidence                                          33369999999994     3467899999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC---
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG---  220 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G---  220 (257)
                      |............         ..+...||.+|||||++...-+...     ..+   =..+||||||.++||++-.   
T Consensus       363 Av~h~~~t~~idi---------~~N~rVGTKRYMAPEvLdetin~~~-----Fes---yk~ADIYafgLVlWEiarRc~~  425 (513)
T KOG2052|consen  363 AVRHDSDTDTIDI---------PPNPRVGTKRYMAPEVLDETINMKH-----FES---YKRADIYAFGLVLWEIARRCES  425 (513)
T ss_pred             eEEecccCCcccC---------CCCCccceeeccChHHhhhhcChhh-----hhh---hhHHHHHHHHHHHHHHHHHhhc
Confidence            8765443221111         1245789999999999866554322     221   2379999999999998642   


Q ss_pred             -------CCCCcccccccCCCCCcchhhhhhcccCCCCCCC
Q 039073          221 -------THPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQ  254 (257)
Q Consensus       221 -------~~Pf~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~  254 (257)
                             ++||.+.  +..++...++-.-+...+++|+.|.
T Consensus       426 ggi~eey~~Pyyd~--Vp~DPs~eeMrkVVCv~~~RP~ipn  464 (513)
T KOG2052|consen  426 GGIVEEYQLPYYDV--VPSDPSFEEMRKVVCVQKLRPNIPN  464 (513)
T ss_pred             CCEehhhcCCcccC--CCCCCCHHHHhcceeecccCCCCCc
Confidence                   5788765  4444444445455577788877764

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=8.9e-26  Score=197.13  Aligned_cols=154  Identities=24%  Similarity=0.379  Sum_probs=126.8

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCC-EEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~-~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ...+++....||-|+||.|=++...... .+|+|.+++...-+....+....|.+++.                      
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYm  497 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYM  497 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhh
Confidence            3567788899999999999998665433 48999998765555544555555555432                      


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                   ..+++|++|||++   +|+.|||||+|.++|.+|.+||.|||+++......
T Consensus       498 LmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  498 LMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             hHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence                                         1699999999999   99999999999999999999999999999876544


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .+              -..+||+-|.|              ||++.....+..+|.||+|+++||+++|.+||.+..
T Consensus       575 KT--------------wTFcGTpEYVA--------------PEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~d  623 (732)
T KOG0614|consen  575 KT--------------WTFCGTPEYVA--------------PEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVD  623 (732)
T ss_pred             ce--------------eeecCCccccc--------------chhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCc
Confidence            32              23689999999              888988889999999999999999999999999754

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.92  E-value=1e-24  Score=185.24  Aligned_cols=142  Identities=25%  Similarity=0.365  Sum_probs=108.3

Q ss_pred             eeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||+|+||.||++.. .+|+.||+|++................|+++                                  
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            68999999999965 4699999999864322211111222223332                                  


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         ++.|++.|++|||+.   +++|+||||+||+++.++.++|+|||++........       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~-------  150 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT-------  150 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce-------
Confidence                               344899999999999   999999999999999999999999999876532211       


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                             .....|+..|+|              ||...+..++.++|+||+||++|+|++|+.||..
T Consensus       151 -------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~  196 (277)
T cd05607         151 -------ITQRAGTNGYMA--------------PEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKD  196 (277)
T ss_pred             -------eeccCCCCCccC--------------HHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCC
Confidence                   012357889999              5666666678999999999999999999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.92  E-value=2.1e-24  Score=181.27  Aligned_cols=152  Identities=26%  Similarity=0.417  Sum_probs=118.3

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...++|++.+.||.|+||.||+|..++++.||+|.+.......    ..+..|+.+                        
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v   78 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSP----EAFLAEANLMKQLQHPRLVRLYAVVTQEPIYII   78 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcH----HHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEE
Confidence            4567899999999999999999988888999999987654332    233344333                        


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..+++.|+.|||+.   +++|+||+|+||+++.++.++++|||++......
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05067          79 TEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDN  155 (260)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCC
Confidence                                        334899999999998   9999999999999999999999999998765422


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ....            .....++..|++              ||...+..++.++|+||||+++|++++ |+.||.+.
T Consensus       156 ~~~~------------~~~~~~~~~y~~--------------pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  207 (260)
T cd05067         156 EYTA------------REGAKFPIKWTA--------------PEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM  207 (260)
T ss_pred             Cccc------------ccCCcccccccC--------------HHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            1110            011234567888              555555567889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-25  Score=200.78  Aligned_cols=149  Identities=27%  Similarity=0.442  Sum_probs=118.6

Q ss_pred             cccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------------  101 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------------  101 (257)
                      ..|...+.||+|+||.||+|+ ..+|+.||||.+........  ++.+.+|++++.+                       
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~--~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~   90 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRP--RERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTR   90 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccch--HHHHHHHHHHHHHcCchhhhhhcccCCccccCcccc
Confidence            345667789999999999996 56899999999987543332  4556666666443                       


Q ss_pred             -------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEc--CCC--CeEEee
Q 039073          102 -------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLD--SNL--EAFVAD  140 (257)
Q Consensus       102 -------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~--~~~--~~~l~d  140 (257)
                                                           .++.|+.|||++   +|+||||||.||++-  .+|  ..||+|
T Consensus        91 ~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtD  167 (732)
T KOG4250|consen   91 LPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTD  167 (732)
T ss_pred             cceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeec
Confidence                                                 689999999999   999999999999883  334  368999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHHh
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      ||.|+.......              .....||..|++||++              . ...|+..+|.|||||++|+++|
T Consensus       168 fG~Arel~d~s~--------------~~S~vGT~~YLhPel~--------------E~q~~y~~tVDLWS~GvtlY~caT  219 (732)
T KOG4250|consen  168 FGAARELDDNSL--------------FTSLVGTEEYLHPELY--------------ERQKKYTATVDLWSFGVTLYECAT  219 (732)
T ss_pred             ccccccCCCCCe--------------eeeecCchhhcChHHH--------------hhccCcCceeehhhhhhHHHHHhc
Confidence            999998765542              2457899999995554              4 3557999999999999999999


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      |..||--.
T Consensus       220 G~lPF~p~  227 (732)
T KOG4250|consen  220 GELPFIPF  227 (732)
T ss_pred             cCCCCCcC
Confidence            99999743

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.92  E-value=2.6e-24  Score=190.59  Aligned_cols=101  Identities=28%  Similarity=0.442  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      ++.|++.||+|||++   +++||||||+||+++.++.++|+|||++...........           .....++..|+|
T Consensus       217 i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~-----------~~~~~~~~~y~a  282 (374)
T cd05106         217 FSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVV-----------KGNARLPVKWMA  282 (374)
T ss_pred             HHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceee-----------ccCCCCccceeC
Confidence            346799999999999   999999999999999999999999999875532211000           011234567999


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                    ||.+.+..++.++|+|||||++|+|++ |+.||...
T Consensus       283 --------------PE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~  318 (374)
T cd05106         283 --------------PESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGI  318 (374)
T ss_pred             --------------HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccc
Confidence                          555555567899999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-25  Score=198.71  Aligned_cols=153  Identities=27%  Similarity=0.381  Sum_probs=121.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ...|.-++.||.|+||-||.|.. .+...||||++..+.....+.-+.+..|+..                         
T Consensus        25 Eklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLV  104 (948)
T KOG0577|consen   25 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLV  104 (948)
T ss_pred             HHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHH
Confidence            34577789999999999999954 5788999999987655544444455555444                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..+.++||+|||++   +.+|||||..|||+...|.+||+|||.+....+   
T Consensus       105 MEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P---  178 (948)
T KOG0577|consen  105 MEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAP---  178 (948)
T ss_pred             HHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCc---
Confidence                                      334789999999999   999999999999999999999999999876532   


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                    .+..+||+.|||||++..           .--+.|+-++||||+|++..|++..++|...++
T Consensus       179 --------------AnsFvGTPywMAPEVILA-----------MDEGqYdgkvDvWSLGITCIELAERkPPlFnMN  229 (948)
T KOG0577|consen  179 --------------ANSFVGTPYWMAPEVILA-----------MDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  229 (948)
T ss_pred             --------------hhcccCCccccchhHhee-----------ccccccCCccceeeccchhhhhhhcCCCccCch
Confidence                          245789999999555311           112348999999999999999999999987554

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.92  E-value=1.7e-24  Score=188.74  Aligned_cols=150  Identities=28%  Similarity=0.422  Sum_probs=117.4

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|++.+.||+|+||.||++... ++..+|+|.+.....  ......+.+|++++                       
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccC--HHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEE
Confidence            3578999999999999999999665 688899998865422  22234455665543                       


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                  +.+++.|+.|||+.+  +++|+||||+||+++.++.++|+|||++.......
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~  158 (333)
T cd06650          81 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  158 (333)
T ss_pred             EEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc
Confidence                                        337999999999741  79999999999999999999999999987543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .               ....|+..|+|              ||...+..++.++|+|||||++|++++|+.||+.
T Consensus       159 ~---------------~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         159 A---------------NSFVGTRSYMS--------------PERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             c---------------ccCCCCccccC--------------HHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            1               12357889999              5555555678899999999999999999999974

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.92  E-value=3.4e-24  Score=181.83  Aligned_cols=154  Identities=31%  Similarity=0.508  Sum_probs=114.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCC----EEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGK----VVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.+ .++.    .||+|.++.....  .....+..|..+                    
T Consensus         5 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (279)
T cd05109           5 KETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSP--KANKEILDEAYVMAGVGSPYVCRLLGICLTST   82 (279)
T ss_pred             chhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCH--HHHHHHHHHHHHHHhcCCCCCceEEEEEcCCC
Confidence            356799999999999999999964 3444    4899998653221  112233333322                    


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        83 ~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          83 VQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             cEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeec
Confidence                                           345899999999999   9999999999999999999999999998866


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ........           .....++..|++              ||...+..++.++|+|||||++||+++ |..||+.
T Consensus       160 ~~~~~~~~-----------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  214 (279)
T cd05109         160 DIDETEYH-----------ADGGKVPIKWMA--------------LESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG  214 (279)
T ss_pred             ccccceee-----------cCCCccchhhCC--------------HHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            43221100           011223567888              555556667899999999999999998 9999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       215 ~  215 (279)
T cd05109         215 I  215 (279)
T ss_pred             C
Confidence            3

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.9e-24  Score=179.49  Aligned_cols=155  Identities=25%  Similarity=0.383  Sum_probs=117.6

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc--HHHHHHHHHHHHH------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED--SAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~------------------------   98 (257)
                      ++|++.+.||+|++|.||.+.. .+++.|++|.+.......  ....+.+.+|+.+                        
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            5799999999999999999965 468999999886543221  1123345555544                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~  158 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC  158 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceeccccc
Confidence                                       344799999999999   99999999999999999999999999987543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....          ......|+..|+|              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       159 ~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  210 (263)
T cd06625         159 SSGT----------GMKSVTGTPYWMS--------------PEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF  210 (263)
T ss_pred             cccc----------cccCCCcCccccC--------------cceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc
Confidence            1000          0012346778999              55555555789999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.92  E-value=1.6e-24  Score=181.95  Aligned_cols=150  Identities=27%  Similarity=0.435  Sum_probs=116.5

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|...+++.||+|.+......    .+.+..|+.+                         
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS----VQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYII   79 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchh----HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEE
Confidence            45789999999999999999998878888999998754322    2334444443                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..+++.|++|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05072          80 TEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             EecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence                                        334899999999998   9999999999999999999999999998765322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ....            .....++..|+|              ||...+..++.++|+||||+++|+|++ |+.||..
T Consensus       157 ~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~  207 (261)
T cd05072         157 EYTA------------REGAKFPIKWTA--------------PEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPG  207 (261)
T ss_pred             ceec------------cCCCccceecCC--------------HHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCC
Confidence            1110            011234567999              555555557889999999999999998 9999964

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.92  E-value=4.3e-25  Score=191.20  Aligned_cols=145  Identities=26%  Similarity=0.368  Sum_probs=111.3

Q ss_pred             eeeeecCceeEEEEEe----CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      +.||+|+||.||++..    .+|+.||+|++........ ....+..|+.+                             
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVR-DRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCC
Confidence            5799999999999954    3688999999975432211 12233344433                             


Q ss_pred             ----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCc
Q 039073           99 ----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY  156 (257)
Q Consensus        99 ----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  156 (257)
                                            +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.........   
T Consensus        81 ~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~---  154 (318)
T cd05582          81 RGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK---  154 (318)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc---
Confidence                                  344899999999999   9999999999999999999999999998754322111   


Q ss_pred             cccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       157 ~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                .....|+..|+|              ||...+..++.++|+|||||++|||++|+.||...
T Consensus       155 ----------~~~~~g~~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  201 (318)
T cd05582         155 ----------AYSFCGTVEYMA--------------PEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK  201 (318)
T ss_pred             ----------eecccCChhhcC--------------HHHHcCCCCCCccceeccceEeeeeccCCCCCCCC
Confidence                      123468899999              55555666788999999999999999999999754

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.92  E-value=2.4e-24  Score=181.26  Aligned_cols=151  Identities=24%  Similarity=0.347  Sum_probs=117.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|.. .+++.||||.+.............+..|+.+                          
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            5799999999999999999965 4789999998765333333333444444443                          


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence                                         334799999999999   999999999999999999999999998876542


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....             .....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||..
T Consensus       159 ~~~~-------------~~~~~~~~~~~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~  208 (267)
T cd08228         159 KTTA-------------AHSLVGTPYYMS--------------PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             hhHH-------------HhcCCCCccccC--------------hhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcc
Confidence            2110             112357778999              5555555568899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4.5e-26  Score=203.48  Aligned_cols=158  Identities=25%  Similarity=0.374  Sum_probs=126.3

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHHHH--------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--------------------  101 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--------------------  101 (257)
                      ++.+.|++.-.||.|+||+||+|..+ ++-..|-|++.-   ...+.+..+..|+++|+.                    
T Consensus        29 nP~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIet---kseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLw  105 (1187)
T KOG0579|consen   29 NPRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIET---KSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLW  105 (1187)
T ss_pred             CHHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcc---cchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceE
Confidence            44566788889999999999999655 454556676643   233346677777776443                    


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      +++.||.|||+.   +|+|||||..|||++.+|.++|+|||++.....
T Consensus       106 iliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~  182 (1187)
T KOG0579|consen  106 ILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKS  182 (1187)
T ss_pred             EEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchh
Confidence                                            799999999999   999999999999999999999999998764432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .......+||+.|||||+.+         .|.....+|+.++||||||++|.||+-+.+|-..++
T Consensus       183 t-------------~qkRDsFIGTPYWMAPEVvm---------CET~KD~PYDykaDiWSlGITLIEMAqiEPPHheln  239 (1187)
T KOG0579|consen  183 T-------------RQKRDSFIGTPYWMAPEVVM---------CETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN  239 (1187)
T ss_pred             H-------------HhhhccccCCcccccchhee---------eccccCCCchhhhhHHhhhhHHHHHhccCCCccccc
Confidence            2             22235578999999999987         456677789999999999999999999999988654

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.92  E-value=4.5e-26  Score=188.16  Aligned_cols=152  Identities=32%  Similarity=0.458  Sum_probs=124.8

Q ss_pred             hhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      .+.+-|++..+||+|+||.||+| +...|+.+|||.+-...     .++++..|+.+                       
T Consensus        30 ~PEEVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s-----DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLW  104 (502)
T KOG0574|consen   30 PPEEVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT-----DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLW  104 (502)
T ss_pred             ChHHHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc-----hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceE
Confidence            34455889999999999999999 66789999999985432     13444444444                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +.+..+.||+|||..   .-+|||||..|||++.+|+.+|+|||++.....
T Consensus       105 IVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD  181 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTD  181 (502)
T ss_pred             eehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhh
Confidence                                         333678899999999   999999999999999999999999999987643


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      .             +-..+..+||+.|||              ||++....|+..+||||+|++..||+.|++||..+-.
T Consensus       182 T-------------MAKRNTVIGTPFWMA--------------PEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHP  234 (502)
T KOG0574|consen  182 T-------------MAKRNTVIGTPFWMA--------------PEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHP  234 (502)
T ss_pred             h-------------HHhhCccccCccccc--------------HHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccc
Confidence            3             222355789999999              8888888899999999999999999999999986543

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=1.8e-24  Score=192.78  Aligned_cols=154  Identities=24%  Similarity=0.333  Sum_probs=115.7

Q ss_pred             ccccccceeeeecCceeEEEEEe---CCCCEEEEEEcCccccccHHHHHHHH----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL---PDGKVVALKKLHQSETEDSAFVKSFQ----------------------------   93 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~----------------------------   93 (257)
                      ..+|++.+.||.|+||.||++..   .++..|++|.+........+ ++.+.                            
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E-~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  169 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGRE-IDILKTISHRAIINLIHAYRWKSTVCMVMPKYK  169 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHH-HHHHHhcCCCCccceeeeEeeCCEEEEEehhcC
Confidence            45799999999999999999954   24678999988653211110 00000                            


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           94 ---------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        94 ---------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                     .++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++..........    
T Consensus       170 ~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~----  242 (392)
T PHA03207        170 CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTP----  242 (392)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCcccccc----
Confidence                           12223556899999999999   99999999999999999999999999987554322111    


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                             ......||..|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       243 -------~~~~~~gt~~y~a--------------PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  290 (392)
T PHA03207        243 -------QCYGWSGTLETNS--------------PELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK  290 (392)
T ss_pred             -------cccccccccCccC--------------HhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                   0123568999999              55555666788999999999999999999999764

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.92  E-value=4e-24  Score=195.13  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-C-CCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-D-GKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~-~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...|.+.+.||+|++|.||+|... + +..||+|.+.....   .....+..|+.+                        
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~---~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~l  142 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDE---RQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLL  142 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEE
Confidence            334999999999999999999543 4 67788887654321   122333444443                        


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       143 v~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~  219 (478)
T PTZ00267        143 IMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQY  219 (478)
T ss_pred             EEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceec
Confidence                                           334899999999999   9999999999999999999999999998865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .......           .....+||+.|+|              ||...+..++.++|+||+||++|+|++|+.||.+.
T Consensus       220 ~~~~~~~-----------~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~  274 (478)
T PTZ00267        220 SDSVSLD-----------VASSFCGTPYYLA--------------PELWERKRYSKKADMWSLGVILYELLTLHRPFKGP  274 (478)
T ss_pred             CCccccc-----------cccccCCCccccC--------------HhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            4321100           0123568999999              55555666789999999999999999999999754

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=2.6e-24  Score=194.75  Aligned_cols=155  Identities=22%  Similarity=0.300  Sum_probs=113.8

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHH----------------------------------HH
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSA----------------------------------FV   89 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~----------------------------------~~   89 (257)
                      ...|.+.+.||+|+||.||++.+. +++.||||.........+.                                  ..
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~~~L~  247 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLY  247 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccCCCHH
Confidence            447999999999999999999664 6888999964321100000                                  00


Q ss_pred             HHH--------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccccc
Q 039073           90 KSF--------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT  161 (257)
Q Consensus        90 ~~~--------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  161 (257)
                      ..+        ..++..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++..........       
T Consensus       248 ~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~-------  317 (461)
T PHA03211        248 TYLGARLRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTP-------  317 (461)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccccc-------
Confidence            000        112334667999999999999   99999999999999999999999999987653221110       


Q ss_pred             CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       162 ~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                          ......||..|+|              ||...+..++.++|||||||++|||++|..|+...
T Consensus       318 ----~~~~~~GT~~Y~A--------------PE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~  365 (461)
T PHA03211        318 ----FHYGIAGTVDTNA--------------PEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSA  365 (461)
T ss_pred             ----cccccCCCcCCcC--------------HHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccC
Confidence                0123468999999              55555666789999999999999999988766543

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.92  E-value=3.7e-24  Score=179.71  Aligned_cols=151  Identities=29%  Similarity=0.436  Sum_probs=116.9

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|...++..+|+|.+.......    +.+.+|+.+                         
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~----~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~   79 (260)
T cd05070           4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSP----ESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVT   79 (260)
T ss_pred             chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCH----HHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEE
Confidence            456899999999999999999988788889999997644332    233344333                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          80 EYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence                                       344899999999999   99999999999999999999999999987653321


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ...            .....++..|+|              ||...+..++.++|+||||+++|++++ |..||.+.
T Consensus       157 ~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  207 (260)
T cd05070         157 YTA------------RQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             ccc------------ccCCCCCccccC--------------hHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            110            011224557999              555555567889999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.92  E-value=4e-24  Score=181.59  Aligned_cols=153  Identities=27%  Similarity=0.444  Sum_probs=113.7

Q ss_pred             ccccccceeeeecCceeEEEEEeCC------CCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD------GKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .++|++.+.||+|+||.||+|....      ...|++|.+.....  ......+.+|+.+                    
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~--~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   81 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE--PKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ   81 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCC--HHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC
Confidence            4578999999999999999996532      25799999864322  1112233333322                    


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc
Q 039073           99 -----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD  131 (257)
Q Consensus        99 -----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~  131 (257)
                                                                     +..|++.|+.|||+.   +++|+||||+||+++
T Consensus        82 ~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~  158 (283)
T cd05048          82 PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVG  158 (283)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEc
Confidence                                                           445899999999999   999999999999999


Q ss_pred             CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          132 SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       132 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      .++.++|+|||++..........           ......++..|+|              ||...+..++.++|+||||
T Consensus       159 ~~~~~~L~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~sDv~slG  213 (283)
T cd05048         159 EGLTVKISDFGLSRDIYSADYYR-----------VQSKSLLPVRWMP--------------PEAILYGKFTTESDIWSFG  213 (283)
T ss_pred             CCCcEEECCCcceeecccccccc-----------ccCCCcccccccC--------------HHHhccCcCchhhhHHHHH
Confidence            99999999999987543221100           0112345678999              5555555578899999999


Q ss_pred             HHHHHHHh-CCCCCccc
Q 039073          212 VVALKVLM-GTHPGELL  227 (257)
Q Consensus       212 ~~l~ell~-G~~Pf~~~  227 (257)
                      |++|||++ |..||.+.
T Consensus       214 ~il~el~~~g~~p~~~~  230 (283)
T cd05048         214 VVLWEIFSYGLQPYYGF  230 (283)
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            99999998 99999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.92  E-value=3.7e-24  Score=180.19  Aligned_cols=151  Identities=30%  Similarity=0.434  Sum_probs=116.6

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|...++..||+|++.......    +.+..|+.+                         
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~----~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~   79 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP----EAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVT   79 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCH----HHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEE
Confidence            457799999999999999999987766779999997543221    223333332                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..+++.|++|||+.   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          80 EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             EcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence                                       345899999999999   99999999999999999999999999987654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ...            .....++..|++              ||...+..++.++|+||||+++|++++ |+.||...
T Consensus       157 ~~~------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~  207 (262)
T cd05071         157 YTA------------RQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  207 (262)
T ss_pred             ccc------------ccCCcccceecC--------------HhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            110            011234567999              566666667899999999999999999 89999754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=5.9e-24  Score=178.65  Aligned_cols=151  Identities=26%  Similarity=0.372  Sum_probs=117.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|++|.||+|... +|+.||+|.++..........+.+.+|+.+                          
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            68999999999999999999665 799999998865433333223445555444                          


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|+.|||+.   +++|+||+|+||+++.++.++++|||++.....
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence                                         233799999999999   999999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....             .....++..|.|              ||...+..++.++|+||||+++|+|++|+.||..
T Consensus       159 ~~~~-------------~~~~~~~~~y~a--------------pE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  208 (267)
T cd08224         159 KTTA-------------AHSLVGTPYYMS--------------PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             CCcc-------------cceecCCccccC--------------HHHhccCCCCchhcHHHHHHHHHHHHHCCCCccc
Confidence            2111             012346778888              5655566678899999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.91  E-value=5.6e-24  Score=179.48  Aligned_cols=152  Identities=21%  Similarity=0.320  Sum_probs=114.3

Q ss_pred             ccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|..    ..+..||+|.++.....  .....+..|+..                      
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   81 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSD--KQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTM   81 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCH--HHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCc
Confidence            45789999999999999999954    23668999999764322  223345555544                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.|++|||++   +++|+||||+||+++.++.++++|||.+....
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~~  158 (266)
T cd05064          82 MIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDK  158 (266)
T ss_pred             EEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCccccccc
Confidence                                          334899999999999   99999999999999999999999999765432


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......            .....++..|+|              ||...+..++.++|+|||||++||+++ |+.||...
T Consensus       159 ~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~  212 (266)
T cd05064         159 SEAIYT------------TMSGKSPVLWAA--------------PEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             ccchhc------------ccCCCCceeecC--------------HHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence            111000            011234567899              666666667899999999999999875 99999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.91  E-value=7.1e-24  Score=178.47  Aligned_cols=155  Identities=25%  Similarity=0.401  Sum_probs=116.7

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccc--ccHHHHHHHHHHHHH------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSET--EDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~~~~e~~~------------------------   98 (257)
                      .+|++.+.||+|+||.||.|.. .++..||||.+.....  ......+.+.+|+.+                        
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            5799999999999999999965 4689999998854321  112223444445443                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|++|||++   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~  158 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKRLQT  158 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCcccccccc
Confidence                                         344899999999999   999999999999999999999999998875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......          ......|+..|+||              |...+..++.++|+||||+++|++++|+.||...
T Consensus       159 ~~~~~~----------~~~~~~~~~~y~aP--------------E~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         159 ICLSGT----------GMKSVTGTPYWMSP--------------EVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             cccccc----------ccccCCCCccccCh--------------hhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence            111000          01223578889994              4444555688999999999999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.91  E-value=3.4e-24  Score=184.18  Aligned_cols=153  Identities=28%  Similarity=0.389  Sum_probs=112.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-----------------CCCEEEEEEcCccccccHHHHHHHHHHHH----------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-----------------DGKVVALKKLHQSETEDSAFVKSFQNEAH----------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-----------------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~----------   97 (257)
                      .++|.+.+.||+|+||.||++...                 ++..||+|.+......  .....+.+|+.          
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANK--NARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCH--HHHHHHHHHHHHHhhcCCCCe
Confidence            467999999999999999999642                 2347999998754221  11223333332          


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHhhCCCCC
Q 039073           98 ------------------------------------------------------------VLSTSVAHALSYLHHDCTLS  117 (257)
Q Consensus        98 ------------------------------------------------------------~l~~~i~~~l~~LH~~~~~~  117 (257)
                                                                                  .++.|++.|+.|||++   +
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~  158 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---N  158 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---C
Confidence                                                                        2445899999999999   9


Q ss_pred             eEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh
Q 039073          118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY  197 (257)
Q Consensus       118 i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~  197 (257)
                      ++|+||||+||+++.++.++|+|||++..........           ......++..|+|              ||...
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~  213 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYR-----------IQGRAVLPIRWMA--------------WECIL  213 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCceeE-----------ecCcCCCCccccC--------------HHHHh
Confidence            9999999999999999999999999987543221100           0112334678999              55555


Q ss_pred             cCCCCCccchhhHHHHHHHHHh--CCCCCccc
Q 039073          198 TMVVTEKCDVYSFGVVALKVLM--GTHPGELL  227 (257)
Q Consensus       198 ~~~~~~~~DiwSlG~~l~ell~--G~~Pf~~~  227 (257)
                      +..++.++|+||||+++|||++  +..||...
T Consensus       214 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~  245 (304)
T cd05096         214 MGKFTTASDVWAFGVTLWEILMLCKEQPYGEL  245 (304)
T ss_pred             cCCCCchhhhHHHHHHHHHHHHccCCCCCCcC
Confidence            5567899999999999999986  67788754

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=6.8e-24  Score=183.23  Aligned_cols=165  Identities=27%  Similarity=0.357  Sum_probs=121.0

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|++|.||+|... +++.||+|.+...........+.+..|+++                          
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            47899999999999999999664 589999999976544432334445555444                          


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++.......
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~  157 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEP  157 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhcccccc
Confidence                                       334899999999999   99999999999999999999999999987653321


Q ss_pred             CCCCcccc----------------ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          152 SNRPYEWA----------------LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       152 ~~~~~~~~----------------~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ........                ........+...|+..|+|              ||...+..++.++|+||||+++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~a--------------PE~~~~~~~~~~~Di~slG~ll~  223 (316)
T cd05574         158 PPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIA--------------PEVISGDGHGSAVDWWTLGILLY  223 (316)
T ss_pred             cccccccccccccccccccchhhhcccccCCCCCCcCccCCcC--------------HHHHcCCCCCchHHHHHHHHHHH
Confidence            11000000                0000001123467888999              55555556788999999999999


Q ss_pred             HHHhCCCCCccc
Q 039073          216 KVLMGTHPGELL  227 (257)
Q Consensus       216 ell~G~~Pf~~~  227 (257)
                      ++++|+.||.+.
T Consensus       224 ~l~~g~~pf~~~  235 (316)
T cd05574         224 EMLYGTTPFKGS  235 (316)
T ss_pred             HHhhCCCCCCCC
Confidence            999999999754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.91  E-value=3.7e-24  Score=184.78  Aligned_cols=149  Identities=24%  Similarity=0.343  Sum_probs=106.9

Q ss_pred             ceeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHH-----------------------------------
Q 039073           51 KYCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSF-----------------------------------   92 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~-----------------------------------   92 (257)
                      ...||+|+||.||+|...   ++..||+|.+........ ...+.                                   
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~-~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMS-ACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHH-HHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            367999999999999754   457899998865321110 00000                                   


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE----cCCCCeEEeeccCccc
Q 039073           93 ----------------------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL----DSNLEAFVADFGTARL  146 (257)
Q Consensus        93 ----------------------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill----~~~~~~~l~dfg~~~~  146 (257)
                                            ..++..+..|++.||.|||+.   +++||||||+||++    +.++.++|+|||++..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence                                  011223556899999999999   99999999999999    4667899999999986


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........          .......||..|+|||+              ..+. .++.++|+||+||++|||++|++||.
T Consensus       162 ~~~~~~~~----------~~~~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwSlG~il~el~tg~~~f~  217 (317)
T cd07867         162 FNSPLKPL----------ADLDPVVVTFWYRAPEL--------------LLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCCCcccc----------cccCcceecccccCcHH--------------hcCCCccCcHHHHHhHHHHHHHHHhCCCCcc
Confidence            54322110          01123467889999554              4332 35889999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       218 ~~  219 (317)
T cd07867         218 CR  219 (317)
T ss_pred             cc
Confidence            53

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.91  E-value=8.1e-24  Score=179.80  Aligned_cols=152  Identities=26%  Similarity=0.398  Sum_probs=112.5

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCC----EEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGK----VVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ++|++.+.||+|+||.||+|... +++    .+++|.+......  .....+..|...                      
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~   84 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGR--QTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQ   84 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccch--HHHHHHHHHHHHHhcCCCCCcceEEEEECCCccE
Confidence            57889999999999999999653 444    4778887543211  112233333222                      


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|++|||+.   +++|+||||+||+++.++.++|+|||.+.....
T Consensus        85 ~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~  161 (279)
T cd05111          85 LVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLYP  161 (279)
T ss_pred             EEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceeccC
Confidence                                         445899999999999   999999999999999999999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......           .....++..|++              ||...+..++.++|+||||+++||+++ |+.||.+.
T Consensus       162 ~~~~~~-----------~~~~~~~~~y~~--------------pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~  215 (279)
T cd05111         162 DDKKYF-----------YSEHKTPIKWMA--------------LESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGM  215 (279)
T ss_pred             CCcccc-----------cCCCCCcccccC--------------HHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            221100           112345667889              566666667899999999999999998 99999764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.91  E-value=4.2e-24  Score=183.40  Aligned_cols=152  Identities=21%  Similarity=0.309  Sum_probs=113.7

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      .++|++.+.||.|+||.||+|... +++.||+|.+........  ...+..|+.                          
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGA--PCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCc--hhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            568999999999999999999654 688999999864322111  112222322                          


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++.|++.|++|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        83 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  159 (301)
T cd07873          83 FEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  159 (301)
T ss_pred             EeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC
Confidence                                     2445899999999999   999999999999999999999999999875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....++..|+|||++...             ..++.++|+||+|+++|+|++|++||...
T Consensus       160 ~-------------~~~~~~~~~y~~PE~~~~~-------------~~~~~~~Dv~slG~~l~el~tg~~~f~~~  208 (301)
T cd07873         160 T-------------YSNEVVTLWYRPPDILLGS-------------TDYSTQIDMWGVGCIFYEMSTGRPLFPGS  208 (301)
T ss_pred             c-------------ccccceeecccCcHHHhCC-------------CCCccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1             0113457789995554321             23578999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=8.7e-24  Score=177.53  Aligned_cols=151  Identities=28%  Similarity=0.435  Sum_probs=116.8

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|++|.||+|...+++.||+|.++.....    .+.+.+|+..                         
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD----PKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIV   79 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCccc----HHHHHHHHHHHHHCCCCCccceeEEEecCCCeeee
Confidence            45679999999999999999998777788999998764332    1233444433                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..+++.|+.+||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05068          80 TELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKED  156 (261)
T ss_pred             eecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCC
Confidence                                        334799999999999   9999999999999999999999999998866422


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .....            .....+..|+|              ||...+..++.++|+||||+++|++++ |+.||.+.
T Consensus       157 ~~~~~------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  208 (261)
T cd05068         157 IYEAR------------EGAKFPIKWTA--------------PEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM  208 (261)
T ss_pred             ccccc------------CCCcCceeccC--------------ccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            11100            11122356888              666666667899999999999999999 99999764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.91  E-value=6.5e-24  Score=181.28  Aligned_cols=149  Identities=29%  Similarity=0.405  Sum_probs=118.3

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|++|.||++... +++.||+|++.............+..|+++                          
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            47899999999999999999654 689999999875433333334445555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++.......  
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~--  155 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRT--  155 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCCC--
Confidence                                     334899999999998   99999999999999999999999999987653221  


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....++..|++              ||...+...+.++|+||||+++|+|++|+.||...
T Consensus       156 --------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  201 (290)
T cd05580         156 --------------YTLCGTPEYLA--------------PEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD  201 (290)
T ss_pred             --------------CCCCCCccccC--------------hhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                          12357888999              55555555688999999999999999999999754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.91  E-value=7.7e-24  Score=187.62  Aligned_cols=100  Identities=29%  Similarity=0.428  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhh
Q 039073          100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL  179 (257)
Q Consensus       100 ~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  179 (257)
                      +.|++.|+.|||++   +++||||||+||+++.++.++|+|||++...........           .....++..|+| 
T Consensus       220 ~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~-----------~~~~~~~~~y~a-  284 (375)
T cd05104         220 SYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVV-----------KGNARLPVKWMA-  284 (375)
T ss_pred             HHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcccccc-----------cCCCCCCcceeC-
Confidence            45899999999999   999999999999999999999999999876532211100           011234567999 


Q ss_pred             hHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       180 e~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                   ||...+..++.++|+|||||++|||++ |..||...
T Consensus       285 -------------PE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~  320 (375)
T cd05104         285 -------------PESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGM  320 (375)
T ss_pred             -------------hhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence                         555556667899999999999999998 99999764

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-25  Score=195.36  Aligned_cols=144  Identities=30%  Similarity=0.475  Sum_probs=120.7

Q ss_pred             ceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH----------------------------
Q 039073           51 KYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------------------------  101 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----------------------------  101 (257)
                      .+.||.|.||+||-| +.++|+.||||++.+.+....+ ...+.+|+.+|..                            
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kq-esqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQ-ESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCch-HHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc
Confidence            478999999999999 5568999999999876544332 3566677776433                            


Q ss_pred             ------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeeccCccccccCCCCC
Q 039073          102 ------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus       102 ------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              ||+.||.|||..   +|+|.||||+|+|+.+..   .+||+|||+++.......+ 
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR-  723 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR-  723 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecchhhhh-
Confidence                                    899999999999   999999999999997654   4799999999987654433 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                   ....||+.|+|              ||++....|++.-|+||.|+++|-.++|..||..
T Consensus       724 -------------rsVVGTPAYLa--------------PEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNE  768 (888)
T KOG4236|consen  724 -------------RSVVGTPAYLA--------------PEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNE  768 (888)
T ss_pred             -------------hhhcCCccccC--------------HHHHhhccccccccceeeeEEEEEEecccccCCC
Confidence                         23579999999              7888888899999999999999999999999974

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.91  E-value=7.2e-24  Score=196.25  Aligned_cols=167  Identities=22%  Similarity=0.323  Sum_probs=116.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-C----CCEEEEEEcCccccccHH---------------H---------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-D----GKVVALKKLHQSETEDSA---------------F---------------   88 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~----~~~vaiK~~~~~~~~~~~---------------~---------------   88 (257)
                      ..++|++.+.||+|+||.||+|... +    +..||+|++.........               +               
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            5789999999999999999999654 5    789999987532110000               0               


Q ss_pred             ------------HHHHH----------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCe
Q 039073           89 ------------VKSFQ----------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNI  128 (257)
Q Consensus        89 ------------~~~~~----------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~ni  128 (257)
                                  ...+.                            ..+..+..|++.||.|||++   +|+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHE
Confidence                        00000                            01223567899999999999   999999999999


Q ss_pred             EEcC-CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchh--h------hhhhcC
Q 039073          129 LLDS-NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFH--V------ELAYTM  199 (257)
Q Consensus       129 ll~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~--p------e~~~~~  199 (257)
                      |++. ++.++|+|||++..........            .....+++.|+|||.+..........  +      ......
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l~~~~~~~------------~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~  354 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADLRVGINYI------------PKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQL  354 (566)
T ss_pred             EEeCCCCcEEEEeCCCccccccccccC------------CcccccCCCccChHHhhccCCCCCCccccccccccchhccc
Confidence            9986 5789999999997553222111            12346789999999876543321100  0      011122


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          200 VVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       200 ~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .++.++||||+||++|||+++..|++
T Consensus       355 ~~~~k~DVwSlGviL~el~~~~~~~~  380 (566)
T PLN03225        355 NLPDRFDIYSAGLIFLQMAFPNLRSD  380 (566)
T ss_pred             cCCCCcccHHHHHHHHHHHhCcCCCc
Confidence            35678899999999999999887765

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.91  E-value=4.5e-24  Score=179.63  Aligned_cols=151  Identities=24%  Similarity=0.347  Sum_probs=117.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|++|.||++.. .++..++||.+.............+..|+.+                          
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            5789999999999999999964 5789999998865433333333444444443                          


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|+.|||++   +++|+||+|+||+++.++.++++|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence                                         233799999999999   999999999999999999999999998876533


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....             .....|+..|+|              ||...+..++.++|+||||+++|+|++|..||.+
T Consensus       159 ~~~~-------------~~~~~~~~~~~a--------------pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  208 (267)
T cd08229         159 KTTA-------------AHSLVGTPYYMS--------------PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             CCcc-------------cccccCCcCccC--------------HHHhcCCCccchhhHHHHHHHHHHHHhCCCCccc
Confidence            2211             112357788999              5555555568899999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.91  E-value=5.9e-24  Score=185.76  Aligned_cols=100  Identities=30%  Similarity=0.425  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhh
Q 039073          100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL  179 (257)
Q Consensus       100 ~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  179 (257)
                      +.|++.|+.|||++   +++||||||+||+++.++.++|+|||++...........           .....++..|+| 
T Consensus       179 ~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~-----------~~~~~~~~~y~a-  243 (337)
T cd05054         179 SFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR-----------KGDARLPLKWMA-  243 (337)
T ss_pred             HHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhh-----------ccCCCCCccccC-
Confidence            45899999999999   999999999999999999999999999876532211000           112334567999 


Q ss_pred             hHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       180 e~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                   ||...+..++.++|+||+||++|||++ |..||.+.
T Consensus       244 -------------PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         244 -------------PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             -------------cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC
Confidence                         555556667899999999999999998 99999753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.4e-23  Score=176.71  Aligned_cols=155  Identities=25%  Similarity=0.386  Sum_probs=117.6

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccc--ccHHHHHHHHHHHHH------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSET--EDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~~~~e~~~------------------------   98 (257)
                      .+|++.+.||+|+||.||+|.. .++..||+|.+.....  ........+.+|+++                        
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            5799999999999999999965 4689999998753211  122234455555554                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccccccc
Confidence                                         234899999999999   999999999999999999999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......          ......++..|+|              ||...+..++.++|+|||||++|++++|+.||...
T Consensus       159 ~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         159 ICMSGT----------GIKSVTGTPYWMS--------------PEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             ccccCc----------cccccCCcccccC--------------HhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            111000          0112357788999              55555555688999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.91  E-value=9.5e-24  Score=177.62  Aligned_cols=149  Identities=31%  Similarity=0.443  Sum_probs=114.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|.+.+.||+|++|.||+|.. .+++.||+|.+......    ...+.+|+.+                         
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   80 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchH----HHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEE
Confidence            34688999999999999999965 46889999998754321    2334444333                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.|++|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~  157 (263)
T cd05052          81 TEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  157 (263)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccc
Confidence                                        345899999999998   9999999999999999999999999998765332


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ....            .....++..|+|              ||...+..++.++|+|||||++|||++ |..||.+
T Consensus       158 ~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~  208 (263)
T cd05052         158 TYTA------------HAGAKFPIKWTA--------------PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  208 (263)
T ss_pred             eeec------------cCCCCCccccCC--------------HHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            1110            011223557889              666666667889999999999999998 9999975

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.91  E-value=7e-24  Score=184.95  Aligned_cols=155  Identities=25%  Similarity=0.393  Sum_probs=115.0

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|++......  .....+..|+.+                        
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   80 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQ--TFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF   80 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccc--hhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence            357899999999999999999954 57899999998642211  112222233222                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.|+.+||++   +++|+||||+||+++.++.++|+|||++....
T Consensus        81 ~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849          81 NDVYIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             ceEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence                                          344899999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......          ......|+..|+|||.+.             ....++.++|+||+|+++|+|++|+.||.+
T Consensus       158 ~~~~~~~----------~~~~~~~~~~y~aPE~~~-------------~~~~~~~~~DvwslGvil~el~~G~~~f~~  212 (336)
T cd07849         158 PEHDHTG----------FLTEYVATRWYRAPEIML-------------NSKGYTKAIDIWSVGCILAEMLSNRPLFPG  212 (336)
T ss_pred             ccccccC----------CcCCcCcCCCccChHHhh-------------CCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            3221110          012245788899954432             122358899999999999999999999965

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.91  E-value=1.2e-23  Score=177.24  Aligned_cols=155  Identities=25%  Similarity=0.381  Sum_probs=117.9

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc--cHHHHHHHHHHHHH------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE--DSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~~~~e~~~------------------------   98 (257)
                      .+|+..+.||+|+||.||+|.. .+++.|++|++......  .......+.+|+.+                        
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            4789999999999999999965 46889999988654221  12223445555544                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~  158 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  158 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcccccc
Confidence                                         334899999999998   999999999999999999999999999875532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......          ......++..|+|              ||...+..++.++|+||+||++|++++|+.||...
T Consensus       159 ~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         159 ICMSGT----------GIRSVTGTPYWMS--------------PEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             ccccCC----------ccccCCccccccC--------------HHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence            111000          0112346788999              55555556788999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.91  E-value=6.6e-24  Score=180.32  Aligned_cols=153  Identities=23%  Similarity=0.379  Sum_probs=113.1

Q ss_pred             ccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..+|.+.+.||+|+||.||+|...      +++.||+|++.....  ......+..|+.+                    
T Consensus         4 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~   81 (283)
T cd05091           4 LSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE--GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ   81 (283)
T ss_pred             HHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC--HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC
Confidence            456888999999999999999642      257899999975432  1122233333222                    


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc
Q 039073           99 -----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD  131 (257)
Q Consensus        99 -----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~  131 (257)
                                                                     +..|++.|+.|||++   +++||||||+||+++
T Consensus        82 ~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~  158 (283)
T cd05091          82 PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVF  158 (283)
T ss_pred             ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEec
Confidence                                                           334899999999999   999999999999999


Q ss_pred             CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          132 SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       132 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      .++.++|+|||+++.........           ......+++.|+|              ||...+..++.++|+||+|
T Consensus       159 ~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG  213 (283)
T cd05091         159 DKLNVKISDLGLFREVYAADYYK-----------LMGNSLLPIRWMS--------------PEAIMYGKFSIDSDIWSYG  213 (283)
T ss_pred             CCCceEecccccccccccchhee-----------eccCccCCccccC--------------HHHHhcCCCCcchhHHHHH
Confidence            99999999999987553221100           0112335678999              5555555568899999999


Q ss_pred             HHHHHHHh-CCCCCccc
Q 039073          212 VVALKVLM-GTHPGELL  227 (257)
Q Consensus       212 ~~l~ell~-G~~Pf~~~  227 (257)
                      |++|||++ |..||.+.
T Consensus       214 ~~l~el~~~g~~p~~~~  230 (283)
T cd05091         214 VVLWEVFSYGLQPYCGY  230 (283)
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            99999998 88999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.91  E-value=6.6e-24  Score=181.15  Aligned_cols=153  Identities=24%  Similarity=0.348  Sum_probs=114.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH---------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE---------------------------   95 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e---------------------------   95 (257)
                      ++++|.+.+.||+|+||.||+|.. .+++.||+|.+........  ...+.+|                           
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGV--PFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCC--cHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            467899999999999999999965 4688999999864322111  0111122                           


Q ss_pred             ------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           96 ------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        96 ------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                              +..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.......
T Consensus        81 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  157 (291)
T cd07870          81 VFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPS  157 (291)
T ss_pred             EEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCCCC
Confidence                                    222455899999999999   99999999999999999999999999887542211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             .....++..|+||              |...+. .++.++|+||+|+++|++++|+.||+...
T Consensus       158 ~~-------------~~~~~~~~~y~aP--------------E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~  208 (291)
T cd07870         158 QT-------------YSSEVVTLWYRPP--------------DVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS  208 (291)
T ss_pred             CC-------------CCCccccccccCC--------------ceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence            11             0123457789995              444332 35778999999999999999999997543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.91  E-value=1.3e-23  Score=176.54  Aligned_cols=151  Identities=28%  Similarity=0.438  Sum_probs=116.3

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++...||+|++|.||+|....+..+|+|.+.......    +.+.+|+.+                         
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~   79 (260)
T cd05069           4 PRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMP----EAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVT   79 (260)
T ss_pred             ChHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccH----HHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEE
Confidence            346799999999999999999987776779999887543221    233344433                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          80 EFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence                                       344899999999999   99999999999999999999999999987653221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ...            .....++..|++              ||...+..++.++|+||||+++|++++ |+.||.+.
T Consensus       157 ~~~------------~~~~~~~~~y~~--------------Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  207 (260)
T cd05069         157 YTA------------RQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             ccc------------cCCCccchhhCC--------------HHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            110            011234567888              565666667889999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.91  E-value=1.3e-23  Score=184.01  Aligned_cols=160  Identities=24%  Similarity=0.323  Sum_probs=120.8

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      .....++....++|++.+.||+|+||.||+|.. .+++.||+|++....... ...+.+.+|+.+               
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~Ei~~l~~l~h~~iv~~~~~   84 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI-IHAKRTYRELRLLKHMKHENVIGLLDV   84 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhh-HHHHHHHHHHHHHHHcCCCcccceeee
Confidence            344566777889999999999999999999964 578899999987532111 111222233222               


Q ss_pred             ----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEE
Q 039073           99 ----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV  138 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l  138 (257)
                                                              ++.|++.|+.|||+.   +++|+||+|+||++++++.++|
T Consensus        85 ~~~~~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl  161 (345)
T cd07877          85 FTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKI  161 (345)
T ss_pred             eeecccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEE
Confidence                                                    445899999999999   9999999999999999999999


Q ss_pred             eeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH
Q 039073          139 ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL  218 (257)
Q Consensus       139 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell  218 (257)
                      +|||++.......                ....++..|+|||++...             ..++.++|+||+||++|+|+
T Consensus       162 ~dfg~~~~~~~~~----------------~~~~~~~~y~aPE~~~~~-------------~~~~~~~DvwslG~il~el~  212 (345)
T cd07877         162 LDFGLARHTDDEM----------------TGYVATRWYRAPEIMLNW-------------MHYNQTVDIWSVGCIMAELL  212 (345)
T ss_pred             ecccccccccccc----------------cccccCCCccCHHHHhCc-------------cCCCchhhHHHHHHHHHHHH
Confidence            9999987542211                113467789996554321             23578999999999999999


Q ss_pred             hCCCCCccc
Q 039073          219 MGTHPGELL  227 (257)
Q Consensus       219 ~G~~Pf~~~  227 (257)
                      +|+.||...
T Consensus       213 ~g~~pf~~~  221 (345)
T cd07877         213 TGRTLFPGT  221 (345)
T ss_pred             hCCCCCCCC
Confidence            999999643

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=5.1e-24  Score=180.75  Aligned_cols=157  Identities=24%  Similarity=0.362  Sum_probs=119.4

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ++.++|++.+.||.|++|.||++... ++..+|+|.+....   ....+.+..|+.+                       
T Consensus         2 ~~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (280)
T cd06611           2 NPNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES---EEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLW   78 (280)
T ss_pred             CchhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC---HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEE
Confidence            45788999999999999999999664 68899999986432   2223344444433                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~  155 (280)
T cd06611          79 ILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKS  155 (280)
T ss_pred             EEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcc
Confidence                                         445899999999999   999999999999999999999999998765432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             .....++..|++||++....         .....++.++|+||+|+++|+|++|+.||...
T Consensus       156 ~~~~-------------~~~~~~~~~y~~PE~~~~~~---------~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         156 TLQK-------------RDTFIGTPYWMAPEVVACET---------FKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             cccc-------------cceeecchhhcCHHHHhhcc---------cCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence            2111             12245788899977654221         12334678999999999999999999999764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.91  E-value=5.3e-24  Score=181.07  Aligned_cols=169  Identities=24%  Similarity=0.357  Sum_probs=124.0

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHH------HHH-------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVK------SFQ-------------   93 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~------~~~-------------   93 (257)
                      ..+.++.+....++|++.+.||+|+||.||++.. .+++.+|+|++............      ...             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           6 KTIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             ceEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            3466778888999999999999999999999965 46889999987643211111000      000             


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC
Q 039073           94 --------------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE  135 (257)
Q Consensus        94 --------------------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~  135 (257)
                                                            ..+..+..|++.|+.|||++   +++|+||+|+||+++.++.
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~  162 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGG  162 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCC
Confidence                                                  00112445899999999999   9999999999999999999


Q ss_pred             eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ++++|||++.........             .....|+..|+|||++....         ..+..++.++|+||+||++|
T Consensus       163 ~kl~dfg~~~~~~~~~~~-------------~~~~~~~~~y~aPE~~~~~~---------~~~~~~~~~~Dv~slGvi~~  220 (286)
T cd06638         163 VKLVDFGVSAQLTSTRLR-------------RNTSVGTPFWMAPEVIACEQ---------QLDSTYDARCDVWSLGITAI  220 (286)
T ss_pred             EEEccCCceeecccCCCc-------------cccccCCCcccChhhhchhh---------hccccccchhhhhhHHHHHH
Confidence            999999998765322111             11235788999977654211         12334688999999999999


Q ss_pred             HHHhCCCCCccc
Q 039073          216 KVLMGTHPGELL  227 (257)
Q Consensus       216 ell~G~~Pf~~~  227 (257)
                      +|++|+.||...
T Consensus       221 el~~g~~p~~~~  232 (286)
T cd06638         221 ELGDGDPPLADL  232 (286)
T ss_pred             HHhcCCCCCCCC
Confidence            999999999754

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.91  E-value=1e-25  Score=183.04  Aligned_cols=152  Identities=28%  Similarity=0.425  Sum_probs=115.1

Q ss_pred             cccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-----------------------  101 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-----------------------  101 (257)
                      ++.+-+..||.|+||.|++- +.+.|+..|||+++......+  .+.+..|.+...+                       
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~ke--q~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiC  141 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKE--QKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWIC  141 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHH--HHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeee
Confidence            34455678999999999999 556899999999987654333  3455555443111                       


Q ss_pred             ---------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 ---------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ---------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                       ..+.||.||-+.  ..|+|||+||+|||+|..|.+||+|||++....
T Consensus       142 MELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv  219 (361)
T KOG1006|consen  142 MELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLV  219 (361)
T ss_pred             HHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHH
Confidence                                             266799999865  489999999999999999999999999998764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .+...              ..-.|+..|||||.+.         |   .+..|+-++|+||+|+++||++||..|+.+-
T Consensus       220 ~SiAk--------------T~daGCrpYmAPERi~---------p---~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w  272 (361)
T KOG1006|consen  220 DSIAK--------------TVDAGCRPYMAPERID---------P---SDKGYDIRSDVWSLGITLYEVATGNFPYRKW  272 (361)
T ss_pred             HHHHh--------------hhccCCccccChhccC---------C---ccCCcchhhhhhhhcceEeeeecCCCCcchH
Confidence            33211              1235888999965542         1   1224799999999999999999999999864

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.91  E-value=1.2e-23  Score=184.77  Aligned_cols=153  Identities=25%  Similarity=0.286  Sum_probs=117.4

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH-------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA-------------------------   96 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~-------------------------   96 (257)
                      ...++|+..+.||+|+||.||+|.. .+++.||+|.+........ ....+..|+                         
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVT-HAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE   91 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChh-HHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc
Confidence            3468899999999999999999965 4789999999864321111 111222222                         


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           97 -----------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        97 -----------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                   ..++.|++.|++|||.+   +++|+||||+||+++.++.++|+|||++...
T Consensus        92 ~~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  168 (353)
T cd07850          92 EFQDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTA  168 (353)
T ss_pred             ccCcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCccceeC
Confidence                                         22456899999999999   9999999999999999999999999998755


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....++..|+|              ||...+..++.++|+||+||++|+|++|+.||...
T Consensus       169 ~~~~~--------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  220 (353)
T cd07850         169 GTSFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGT  220 (353)
T ss_pred             CCCCC--------------CCCCcccccccC--------------HHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence            32211              012346788999              55566666789999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.91  E-value=2e-23  Score=175.11  Aligned_cols=147  Identities=30%  Similarity=0.452  Sum_probs=110.3

Q ss_pred             eeeecCceeEEEEEe---CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------------
Q 039073           53 CIGTGGYGSVYKAEL---PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------------   98 (257)
Q Consensus        53 ~lg~G~~g~V~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------------   98 (257)
                      .||+|+||.||+|..   .++..+|+|+++.... .....+.+..|+.+                               
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN-DPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC-cHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCC
Confidence            689999999999953   3578899999875432 23334556666554                               


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         ++.|++.|+.|||++   +++|+||||.||+++.++.++|+|||++............   
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~---  154 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKA---  154 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeee---
Confidence                               334899999999999   9999999999999999999999999998765432211000   


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                             .....++..|+|              ||......++.++|+||||+++||+++ |+.||...
T Consensus       155 -------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  202 (257)
T cd05116         155 -------KTHGKWPVKWYA--------------PECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM  202 (257)
T ss_pred             -------cCCCCCCccccC--------------HhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence                   011223567889              555555556889999999999999998 99999854

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.91  E-value=8.9e-24  Score=176.98  Aligned_cols=150  Identities=27%  Similarity=0.399  Sum_probs=115.3

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .++|++.+.||+|+||.||++...++..+|+|.+.......    ..+..|+..                          
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~   78 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSE----EDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT   78 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccH----HHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence            35789999999999999999988777789999887543322    233344433                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..+++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+........
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05114          79 EFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY  155 (256)
T ss_pred             EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCce
Confidence                                      334899999999999   999999999999999999999999998875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..            .....++..|+|              ||...+..++.++|+||||+++|++++ |+.||...
T Consensus       156 ~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~  205 (256)
T cd05114         156 TS------------SSGAKFPVKWSP--------------PEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK  205 (256)
T ss_pred             ec------------cCCCCCchhhCC--------------hhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            10            011234557888              566656667889999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=1.7e-23  Score=175.84  Aligned_cols=153  Identities=27%  Similarity=0.433  Sum_probs=117.6

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ....++|++.+.||+|+||.||++....+..+++|.+......    .+.+.+|+.+                       
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   77 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS----VEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYI   77 (260)
T ss_pred             cccccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhH----HHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEE
Confidence            3456889999999999999999998777778999988754321    2334444443                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|+.|||+.   +++|+||+|+|++++.++.++|+|||.+.....
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  154 (260)
T cd05073          78 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIED  154 (260)
T ss_pred             EEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccC
Confidence                                         334899999999998   999999999999999999999999998875532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .....            .....++..|++              ||...+..++.++|+||||+++|++++ |+.||.+.
T Consensus       155 ~~~~~------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  207 (260)
T cd05073         155 NEYTA------------REGAKFPIKWTA--------------PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  207 (260)
T ss_pred             CCccc------------ccCCcccccccC--------------HhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC
Confidence            21110            011234566888              555555567889999999999999998 99999764

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.4e-23  Score=177.02  Aligned_cols=152  Identities=26%  Similarity=0.407  Sum_probs=112.6

Q ss_pred             cccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      |++.+.||+|+||.||+|...    .+..||+|+++....... ....+..|+..                         
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYS-EIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHH-HHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            578899999999999999653    246799999875432211 12233333322                         


Q ss_pred             --------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           99 --------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        99 --------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                            +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~d  156 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVAD  156 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECC
Confidence                                                  345899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-  219 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-  219 (257)
                      ||+++..........           .....++..|++              ||...+..++.++|+|||||++|||++ 
T Consensus       157 fg~~~~~~~~~~~~~-----------~~~~~~~~~~~~--------------pe~~~~~~~~~~~Dv~SlG~il~el~~~  211 (273)
T cd05035         157 FGLSKKIYSGDYYRQ-----------GRIAKMPVKWIA--------------IESLADRVYTSKSDVWAFGVTMWEIATR  211 (273)
T ss_pred             ccceeeccccccccc-----------cccccCCccccC--------------HhhcccCCCCcccchHHHHHHHHHHHhC
Confidence            999886543321100           011223557888              666666667899999999999999999 


Q ss_pred             CCCCCcccc
Q 039073          220 GTHPGELLS  228 (257)
Q Consensus       220 G~~Pf~~~~  228 (257)
                      |..||.+..
T Consensus       212 g~~p~~~~~  220 (273)
T cd05035         212 GQTPYPGVE  220 (273)
T ss_pred             CCCCCCCCC
Confidence            999997643

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.91  E-value=9.8e-24  Score=180.25  Aligned_cols=160  Identities=24%  Similarity=0.357  Sum_probs=119.8

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ....+.++|++.+.||.|+||.||+|+.. +++.+++|.+....   ....+.+..|+..                    
T Consensus         6 ~~~~~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   82 (292)
T cd06644           6 RDLDPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYMVEIEILATCNHPYIVKLLGAFYWDG   82 (292)
T ss_pred             cccCcchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC
Confidence            34455688999999999999999999664 58899999986532   2223444444433                    


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      +..|++.++.|||++   +++|+||+|+||+++.++.++|+|||++..
T Consensus        83 ~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  159 (292)
T cd06644          83 KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAK  159 (292)
T ss_pred             eEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCcccee
Confidence                                            344899999999999   999999999999999999999999998764


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......             .....++..|+|||++....         .....++.++|+|||||++|+|++|..||..
T Consensus       160 ~~~~~~~-------------~~~~~~~~~y~aPE~~~~~~---------~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  217 (292)
T cd06644         160 NVKTLQR-------------RDSFIGTPYWMAPEVVMCET---------MKDTPYDYKADIWSLGITLIEMAQIEPPHHE  217 (292)
T ss_pred             ccccccc-------------cceecCCccccCceeecccc---------ccCCCCCchhhhHhHHHHHHHHhcCCCCCcc
Confidence            3221111             12245778899966553211         1233468899999999999999999999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       218 ~  218 (292)
T cd06644         218 L  218 (292)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.91  E-value=1.9e-23  Score=177.68  Aligned_cols=153  Identities=25%  Similarity=0.401  Sum_probs=114.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||+|..     .++..|++|.+.....  ......+.+|+.+                     
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   81 (283)
T cd05090           4 LSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN--PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQP   81 (283)
T ss_pred             hhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC--HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCc
Confidence            36789999999999999999963     2467899999975322  1222334444332                     


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc
Q 039073           99 -----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD  131 (257)
Q Consensus        99 -----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~  131 (257)
                                                                     +..+++.|++|||++   +++|+||||+||+++
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~  158 (283)
T cd05090          82 VCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIG  158 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEc
Confidence                                                           334799999999999   999999999999999


Q ss_pred             CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          132 SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       132 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      .++.++|+|||++...........           .....++..|+|              ||...+..++.++|+||||
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG  213 (283)
T cd05090         159 EQLHVKISDLGLSREIYSADYYRV-----------QPKSLLPIRWMP--------------PEAIMYGKFSSDSDIWSFG  213 (283)
T ss_pred             CCCcEEeccccccccccCCcceec-----------ccCCCccceecC--------------hHHhccCCCCchhhhHHHH
Confidence            999999999999876533221100           111234567999              5555556678999999999


Q ss_pred             HHHHHHHh-CCCCCccc
Q 039073          212 VVALKVLM-GTHPGELL  227 (257)
Q Consensus       212 ~~l~ell~-G~~Pf~~~  227 (257)
                      +++|||++ |..||.+.
T Consensus       214 ~il~el~~~g~~p~~~~  230 (283)
T cd05090         214 VVLWEIFSFGLQPYYGF  230 (283)
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            99999998 99999754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.91  E-value=1.1e-23  Score=177.63  Aligned_cols=151  Identities=28%  Similarity=0.432  Sum_probs=110.6

Q ss_pred             cccceeeeecCceeEEEEEeCC-CC--EEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELPD-GK--VVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~-~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      |.+.+.||+|+||.||+|.... +.  .+|+|.++...... ...+.+..|..+                          
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR-SEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCH-HHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            3567899999999999997643 33  58999886542211 112333333222                          


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                           +..|++.|++|||++   +++||||||+||+++.++.++|+||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCC
Confidence                                                 344899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-C
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-G  220 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G  220 (257)
                      |++...........           .....++..|++              ||...+..++.++|+||||+++||+++ |
T Consensus       157 g~~~~~~~~~~~~~-----------~~~~~~~~~~~~--------------pe~~~~~~~~~~~Di~slG~il~el~~~g  211 (272)
T cd05075         157 GLSKKIYNGDYYRQ-----------GRIAKMPVKWIA--------------IESLADRVYTTKSDVWSFGVTMWEIATRG  211 (272)
T ss_pred             CcccccCcccceec-----------CCcccCCcccCC--------------HHHccCCCcChHHHHHHHHHHHHHHHcCC
Confidence            99886543221000           011234566888              666666667899999999999999999 8


Q ss_pred             CCCCccc
Q 039073          221 THPGELL  227 (257)
Q Consensus       221 ~~Pf~~~  227 (257)
                      +.||.+.
T Consensus       212 ~~p~~~~  218 (272)
T cd05075         212 QTPYPGV  218 (272)
T ss_pred             CCCCCCC
Confidence            9999754

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.91  E-value=5.6e-24  Score=179.52  Aligned_cols=156  Identities=26%  Similarity=0.420  Sum_probs=117.0

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH-------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA-------------------------   96 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~-------------------------   96 (257)
                      .+.+.|++.+.||+|+||.||+|.. .+++.||+|.+........    .+..|+                         
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~----~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEE----EIKQEINMLKKYSHHRNIATYYGAFIKKNPP   78 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHH----HHHHHHHHHHHhcCCCCeeeEeeEEeecCCC
Confidence            4677899999999999999999965 4688999999864322111    111111                         


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           97 -----------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        97 -----------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                         ..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+||
T Consensus        79 ~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Df  155 (272)
T cd06637          79 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDF  155 (272)
T ss_pred             CCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccC
Confidence                                               12445899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++.........             .....|+..|+|||++.+..         .....++.++|+||+||++|||++|+
T Consensus       156 g~~~~~~~~~~~-------------~~~~~g~~~y~aPE~~~~~~---------~~~~~~~~~~Dv~slGv~l~el~~g~  213 (272)
T cd06637         156 GVSAQLDRTVGR-------------RNTFIGTPYWMAPEVIACDE---------NPDATYDFKSDLWSLGITAIEMAEGA  213 (272)
T ss_pred             CCceeccccccc-------------CCcccccccccCHhHhcccc---------CcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            998754322111             12245788999977654321         01234678999999999999999999


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||...
T Consensus       214 ~p~~~~  219 (272)
T cd06637         214 PPLCDM  219 (272)
T ss_pred             CCcccc
Confidence            999743

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.91  E-value=1.1e-23  Score=176.33  Aligned_cols=149  Identities=35%  Similarity=0.566  Sum_probs=115.5

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |++.+.||+|+||.||++... +++.||+|.+.......... .....|+..                            
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~-~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEER-EENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHH-HHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEecccccccccc-chhhhhhhccccccccccccccccccccccccccccc
Confidence            788999999999999999765 56789999998765433321 111223333                            


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             +..|+++||.+||+.   +++|+||||+||+++.++.++|+|||.+........   
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~---  153 (260)
T PF00069_consen   80 CPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNE---  153 (260)
T ss_dssp             ETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTS---
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc---
Confidence                                   344899999999999   999999999999999999999999999875311110   


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                ......++..|.|              ||... +..++.++|+||+|+++|+|++|..||...
T Consensus       154 ----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  154 ----------NFNPFVGTPEYMA--------------PEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             ----------EBSSSSSSGGGSC--------------HHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             ----------ccccccccccccc--------------cccccccccccccccccccccccccccccccccccc
Confidence                      1123457888999              55555 555689999999999999999999999865

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.91  E-value=1.2e-24  Score=180.39  Aligned_cols=165  Identities=24%  Similarity=0.290  Sum_probs=120.7

Q ss_pred             hhccccccceeeeecCceeEEEEE-eC--C--CCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAE-LP--D--GKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~-~~--~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      +..+.|+....||+|.+|.||+|. .+  +  .+.+|||+++..+... ....+..+|+.+                   
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t-GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~   99 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT-GISMSACREIALLRELKHPNVISLVKVFLSH   99 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC-CcCHHHHHHHHHHHHhcCCcchhHHHHHhcc
Confidence            445679999999999999999993 22  2  3378999998663211 111122222221                   


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC----CCeE
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN----LEAF  137 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~----~~~~  137 (257)
                                                           +..||+.|+.|||++   =|+||||||.||++..+    |.+|
T Consensus       100 d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VK  176 (438)
T KOG0666|consen  100 DKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVK  176 (438)
T ss_pred             CceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeE
Confidence                                                 233899999999998   99999999999999877    8999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      |+|+|+++.+..+......          .+...=|..|.|||++.++..|             +...|+||+||++.||
T Consensus       177 IaDlGlaR~~~~plkpl~s----------~d~VVVTiWYRAPELLLGa~hY-------------T~AiDvWAiGCIfaEl  233 (438)
T KOG0666|consen  177 IADLGLARLFNNPLKPLAS----------LDPVVVTIWYRAPELLLGARHY-------------TKAIDVWAIGCIFAEL  233 (438)
T ss_pred             eecccHHHHhhcccccccc----------CCceEEEEEecChHHhcccccc-------------cchhhhHHHHHHHHHH
Confidence            9999999988654321100          1233457889997777666554             7799999999999999


Q ss_pred             HhCCCCCcccccccCCC
Q 039073          218 LMGTHPGELLSSLSSSS  234 (257)
Q Consensus       218 l~G~~Pf~~~~~~~~~~  234 (257)
                      ++-.+.|.+.+.-....
T Consensus       234 Ltl~PlF~g~E~k~~~~  250 (438)
T KOG0666|consen  234 LTLEPLFKGREEKIKTK  250 (438)
T ss_pred             HccCccccchhhhcccC
Confidence            99999999866544333

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.91  E-value=2.1e-23  Score=174.24  Aligned_cols=151  Identities=32%  Similarity=0.478  Sum_probs=117.4

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||+|.. .+++.|++|.+...... ......+..|++.                           
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN-RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC-HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEE
Confidence            588899999999999999965 46889999988654322 2223445555544                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~  156 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN  156 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCccc
Confidence                                      233799999999998   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||....
T Consensus       157 ~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  205 (256)
T cd08529         157 F-------------ANTIVGTPYYLS--------------PELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN  205 (256)
T ss_pred             h-------------hhccccCccccC--------------HHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence            1             112356778999              566666667889999999999999999999997543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.91  E-value=1.5e-23  Score=176.50  Aligned_cols=154  Identities=27%  Similarity=0.411  Sum_probs=115.4

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++.......   ...+..|+..                        
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~---~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~i   83 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDD---FSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWI   83 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccch---HHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEE
Confidence            356799999999999999999965 578899999986532221   1223333322                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06646          84 CMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATI  160 (267)
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeecccc
Confidence                                       345899999999999   99999999999999999999999999987653221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....|+..|+|||.+...           ....++.++|+||+||++|||++|+.||...
T Consensus       161 ~~-------------~~~~~~~~~y~~PE~~~~~-----------~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         161 AK-------------RKSFIGTPYWMAPEVAAVE-----------KNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             cc-------------cCccccCccccCHhHcccc-----------cCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            11             1123577889996553211           1233577999999999999999999999644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.91  E-value=1.1e-23  Score=178.41  Aligned_cols=153  Identities=28%  Similarity=0.446  Sum_probs=115.0

Q ss_pred             ccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .++|.+.+.||+|+||.||+|...      +++.||+|.++.....  ...+.+.+|+++                    
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN--DARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCH--HHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            467899999999999999999653      3578999998754322  122344444332                    


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           99 ---------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        99 ---------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                   +..|++.|+.+||+.   +++|+||+|+||+++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~  158 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYD  158 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCC
Confidence                                                         244799999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.++|+|||++...........           .....++..|+|              ||...+..++.++|+||||++
T Consensus       159 ~~~kl~d~g~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~i  213 (280)
T cd05049         159 LVVKIGDFGMSRDVYTTDYYRV-----------GGHTMLPIRWMP--------------PESIMYRKFTTESDVWSFGVV  213 (280)
T ss_pred             CeEEECCcccceecccCcceec-----------CCCCcccceecC--------------hhhhccCCcchhhhHHHHHHH
Confidence            9999999999875432211000           011234678999              566666667889999999999


Q ss_pred             HHHHHh-CCCCCccc
Q 039073          214 ALKVLM-GTHPGELL  227 (257)
Q Consensus       214 l~ell~-G~~Pf~~~  227 (257)
                      +|||++ |..||...
T Consensus       214 l~e~~~~g~~p~~~~  228 (280)
T cd05049         214 LWEIFTYGKQPWYGL  228 (280)
T ss_pred             HHHHHhcCCCCCCCC
Confidence            999998 99999753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.91  E-value=1.1e-23  Score=176.62  Aligned_cols=152  Identities=30%  Similarity=0.460  Sum_probs=117.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .+..+|++.+.||.|+||.||+|...+++.+++|.+.......   ...+..|+..                        
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLK---QQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYI   79 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhh---HHHHHHHHHHHhcCCCcchhheeeeEecCCCeEE
Confidence            4567899999999999999999987778899999987543211   2223333332                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~  156 (261)
T cd05148          80 ITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKE  156 (261)
T ss_pred             EEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCC
Confidence                                         344899999999999   999999999999999999999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .....             ....++..|++              ||......++.++|+||||+++|++++ |+.||...
T Consensus       157 ~~~~~-------------~~~~~~~~~~~--------------PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~  208 (261)
T cd05148         157 DVYLS-------------SDKKIPYKWTA--------------PEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM  208 (261)
T ss_pred             ccccc-------------cCCCCceEecC--------------HHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC
Confidence            21110             11234567888              555555567889999999999999998 89999764

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=2.2e-23  Score=174.91  Aligned_cols=152  Identities=29%  Similarity=0.451  Sum_probs=116.4

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...++|++.+.||.|+||.||+|...+++.+|||.+.......    +.+..|+..                        
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP----EAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYI   78 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCH----HHHHHHHHHHhhCCCCCEeeeeeeeecCCceEE
Confidence            4567899999999999999999987777889999987643322    223333332                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|+.|||++   +++|+||+|+||+++.++.++++|||.+.....
T Consensus        79 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~  155 (261)
T cd05034          79 VTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIED  155 (261)
T ss_pred             EEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccc
Confidence                                         445899999999999   999999999999999999999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .....            .....++..|++              ||...+..++.++|+||+|+++|++++ |+.||.+.
T Consensus       156 ~~~~~------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  208 (261)
T cd05034         156 DEYTA------------REGAKFPIKWTA--------------PEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM  208 (261)
T ss_pred             hhhhh------------hhccCCCccccC--------------HHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            11000            011123457888              555555567889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.90  E-value=2.7e-23  Score=173.84  Aligned_cols=150  Identities=28%  Similarity=0.401  Sum_probs=114.8

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|++|.||++... +++.||+|++....... ...+.+..|+..                           
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASR-RERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCH-HHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            4899999999999999999654 67889999986432211 112233333332                           


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.+++.|+++||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~  156 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC  156 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEecccC
Confidence                                       344899999999999   99999999999999999999999999987653321


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....++..|+|              ||...+..++.++|+||+|++++++++|+.||+..
T Consensus       157 ~~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  205 (257)
T cd08223         157 DM-------------ASTLIGTPYYMS--------------PELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAK  205 (257)
T ss_pred             Cc-------------cccccCCcCccC--------------hhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            11             112457888999              55555566788999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=8.2e-25  Score=201.29  Aligned_cols=158  Identities=29%  Similarity=0.440  Sum_probs=128.0

Q ss_pred             HhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH---------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS---------------  100 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------------  100 (257)
                      .....+-.+.+.||+|+||+||+|+.      .+.+.||||.++...  ..+..++|++|++.++               
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a--~~~~~~dF~REaeLla~l~H~nIVrLlGVC~  559 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA--ENQARQDFRREAELLAELQHPNIVRLLGVCR  559 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc--cHHHHHHHHHHHHHHHhccCCCeEEEEEEEc
Confidence            33455667788999999999999953      235689999998654  3445689999998844               


Q ss_pred             --------------------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEE
Q 039073          101 --------------------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILL  130 (257)
Q Consensus       101 --------------------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill  130 (257)
                                                                        .||+.|+.||.++   .++||||...|+|+
T Consensus       560 ~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLV  636 (774)
T KOG1026|consen  560 EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLV  636 (774)
T ss_pred             cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhcee
Confidence                                                              3899999999999   99999999999999


Q ss_pred             cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       131 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                      .++..+||+|||+++......--...           ....-..+||+              ||.+....|++++|||||
T Consensus       637 ge~l~VKIsDfGLsRdiYssDYYk~~-----------~~t~lPIRWMp--------------pEsIly~kFTteSDVWs~  691 (774)
T KOG1026|consen  637 GENLVVKISDFGLSRDIYSSDYYKVR-----------GNTLLPIRWMP--------------PESILYGKFTTESDVWSF  691 (774)
T ss_pred             ccceEEEecccccchhhhhhhhhccc-----------CCceeeeecCC--------------HHHhhcCcccchhhhhhh
Confidence            99999999999999977544321111           01112468999              899999999999999999


Q ss_pred             HHHHHHHHh-CCCCCccccc
Q 039073          211 GVVALKVLM-GTHPGELLSS  229 (257)
Q Consensus       211 G~~l~ell~-G~~Pf~~~~~  229 (257)
                      ||++||+.+ |+.||.+.++
T Consensus       692 GVvLWEIFsyG~QPy~glSn  711 (774)
T KOG1026|consen  692 GVVLWEIFSYGKQPYYGLSN  711 (774)
T ss_pred             hhhhhhhhccccCcccccch
Confidence            999999998 9999998754

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.9e-23  Score=175.13  Aligned_cols=151  Identities=29%  Similarity=0.453  Sum_probs=116.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.+++|++......   ..+.+..|+.+                         
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~   78 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGD---DFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIV   78 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchh---hHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEE
Confidence            57899999999999999999965 46888999998754322   23344444443                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+.......
T Consensus        79 ~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  155 (262)
T cd06613          79 MEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATI  155 (262)
T ss_pred             EeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhh
Confidence                                       344899999999998   99999999999999999999999999987543221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC---CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM---VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~---~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             .....++..|++||              ...+.   .++.++|+||||+++|+|++|+.||....
T Consensus       156 ~~-------------~~~~~~~~~y~~Pe--------------~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~  208 (262)
T cd06613         156 AK-------------RKSFIGTPYWMAPE--------------VAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH  208 (262)
T ss_pred             hc-------------cccccCCccccCch--------------hhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            11             11235677899954              44433   56889999999999999999999997643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.90  E-value=1.9e-23  Score=179.09  Aligned_cols=152  Identities=26%  Similarity=0.430  Sum_probs=117.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...+|++.+.||.|++|.||+|.. .+++.|++|.+.......   ...+..|+.+                        
T Consensus        18 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~---~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~l   94 (296)
T cd06654          18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWV   94 (296)
T ss_pred             cccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcch---HHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence            346899999999999999999965 578899999887543222   1233333333                        


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        95 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~  171 (296)
T cd06654          95 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (296)
T ss_pred             eecccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhcccccc
Confidence                                      444899999999999   999999999999999999999999998775432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .....|+..|+|              ||...+..++.++|+|||||++|+|++|+.||....
T Consensus       172 ~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~  220 (296)
T cd06654         172 K-------------RSTMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN  220 (296)
T ss_pred             c-------------cCcccCCccccC--------------HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Confidence            1             012357788999              555555556889999999999999999999997543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.90  E-value=1.7e-23  Score=177.68  Aligned_cols=151  Identities=22%  Similarity=0.317  Sum_probs=112.4

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||+|... +++.||+|++........ ....+..|+.+                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEG-VPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFE   79 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCC-chHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEe
Confidence            5889999999999999999664 789999999865322111 11222223222                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  156 (285)
T cd07861          80 FLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR  156 (285)
T ss_pred             cCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc
Confidence                                      455899999999999   999999999999999999999999999875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....++..|+|||.+...             ..++.++|+||+|+++|+|++|++||.+.
T Consensus       157 ~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         157 V-------------YTHEVVTLWYRAPEVLLGS-------------PRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             c-------------ccCCcccccccChHHhcCC-------------CCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            0             1123467789995544322             22577999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.90  E-value=3.3e-23  Score=173.57  Aligned_cols=144  Identities=28%  Similarity=0.441  Sum_probs=112.0

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||++... |..|++|.++....     .+.+..|+..                         
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~~-----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~l   77 (256)
T cd05082           4 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT-----AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI   77 (256)
T ss_pred             cHHhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCch-----HHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEE
Confidence            3568999999999999999999764 77799998865321     1233333332                         


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..+++.|++|||++   +++|+||+|+||+++.++.++++|||++.....
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~  154 (256)
T cd05082          78 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  154 (256)
T ss_pred             EEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccc
Confidence                                         344899999999999   999999999999999999999999998875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ...                ...++..|+|              ||...+..++.++|+|||||++|+|++ |+.||..
T Consensus       155 ~~~----------------~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~  202 (256)
T cd05082         155 TQD----------------TGKLPVKWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  202 (256)
T ss_pred             cCC----------------CCccceeecC--------------HHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            111                1123457889              555555667889999999999999997 9999974

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.90  E-value=1.5e-23  Score=175.33  Aligned_cols=149  Identities=23%  Similarity=0.395  Sum_probs=115.1

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|+||.||++... +++.+|+|.++......  ..+.+..|+.+                           
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSS--AVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchH--HHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            5889999999999999999654 78899999886432211  12333333333                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.+||++   +++|+||+|.||+++.++.++++|||.+........
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeeccccc
Confidence                                      344899999999999   999999999999999999999999999875532211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||+..
T Consensus       156 ~-------------~~~~~~~~~~~a--------------PE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  203 (255)
T cd08219         156 Y-------------ACTYVGTPYYVP--------------PEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN  203 (255)
T ss_pred             c-------------cccccCCccccC--------------HHHHccCCcCchhhhhhhchhheehhhccCCCCCC
Confidence            1             012357788999              55555566788999999999999999999999854

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.90  E-value=1.5e-23  Score=175.65  Aligned_cols=149  Identities=27%  Similarity=0.407  Sum_probs=113.5

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      .+|++.+.||+|+||.||++..+++..+|+|.+........    .+..|+.+                           
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~----~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSED----DFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE   79 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHH----HHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEe
Confidence            46889999999999999999877777899999875433221    22233322                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+.........
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~  156 (256)
T cd05059          80 YMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT  156 (256)
T ss_pred             cCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceeccccccc
Confidence                                     345899999999999   9999999999999999999999999988755322110


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .            .....++..|+|              ||...+..++.++|+||||+++|++++ |+.||+..
T Consensus       157 ~------------~~~~~~~~~y~~--------------Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  205 (256)
T cd05059         157 S------------SQGTKFPVKWAP--------------PEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF  205 (256)
T ss_pred             c------------cCCCCCCccccC--------------HHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC
Confidence            0            011123456888              666666667889999999999999998 89999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.90  E-value=2.2e-23  Score=176.69  Aligned_cols=155  Identities=26%  Similarity=0.398  Sum_probs=114.1

Q ss_pred             hhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      ...++|++.+.||+|+||.||+|...      ++..||+|++......  .....+.+|+.+                  
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~--~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASM--RERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            45678999999999999999998532      3567999988643211  111223333222                  


Q ss_pred             -------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC
Q 039073           99 -------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE  135 (257)
Q Consensus        99 -------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~  135 (257)
                                                                 ++.|++.|+.|||+.   +++|+||||+||+++.++.
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~  157 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFT  157 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCC
Confidence                                                       344799999999998   9999999999999999999


Q ss_pred             eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ++++|||++..........           ......++..|+|              ||...+..++.++|+||||+++|
T Consensus       158 ~~l~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~  212 (277)
T cd05062         158 VKIGDFGMTRDIYETDYYR-----------KGGKGLLPVRWMS--------------PESLKDGVFTTYSDVWSFGVVLW  212 (277)
T ss_pred             EEECCCCCccccCCcceee-----------cCCCCccCHhhcC--------------hhHhhcCCcCchhHHHHHHHHHH
Confidence            9999999987543221100           0011234667999              55555666789999999999999


Q ss_pred             HHHh-CCCCCccc
Q 039073          216 KVLM-GTHPGELL  227 (257)
Q Consensus       216 ell~-G~~Pf~~~  227 (257)
                      ||++ |..||.+.
T Consensus       213 el~~~~~~p~~~~  225 (277)
T cd05062         213 EIATLAEQPYQGM  225 (277)
T ss_pred             HHHcCCCCCCCCC
Confidence            9999 78999754

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=7.9e-25  Score=178.71  Aligned_cols=155  Identities=26%  Similarity=0.348  Sum_probs=117.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .+.+..+.||-|+||+||.+.++ +|+.||.|++..-.-. -...+.+.+|...                          
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~-L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqE  131 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQN-LASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQE  131 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHH-HHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHH
Confidence            34567789999999999999765 7999999998542111 1111222232222                          


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..||+.||.|||+.   +|+||||||.|.+++++..+||+|||+++....
T Consensus       132 iYV~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~  208 (449)
T KOG0664|consen  132 LYVLTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQ  208 (449)
T ss_pred             HHHHHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccch
Confidence                                         223899999999999   999999999999999999999999999997755


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      ......            ....-|..|.|||.+++++.|             +..+||||.||++.|++-.+..|+..+.
T Consensus       209 d~~~hM------------TqEVVTQYYRAPEiLMGaRhY-------------s~AvDiWSVGCIFaELLgRrILFQAq~P  263 (449)
T KOG0664|consen  209 RDRLNM------------THEVVTQYYRAPELLMGARRY-------------TGAVDIWSVGCIFAELLQRKILFQAAGP  263 (449)
T ss_pred             hhhhhh------------HHHHHHHHhccHHHhhcchhh-------------cCccceehhhHHHHHHHhhhhhhhccCh
Confidence            443321            223346789998888777665             7899999999999999999999986543

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=8.3e-24  Score=175.90  Aligned_cols=162  Identities=24%  Similarity=0.404  Sum_probs=119.0

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      ++++-..++     +.||+|+++.|--+ ...+|..||||++.++....   .+...+|++.                  
T Consensus        75 F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHs---R~RvfREVe~f~~Cqgh~nilqLiefFE  146 (463)
T KOG0607|consen   75 FEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHS---RSRVFREVETFYQCQGHKNILQLIEFFE  146 (463)
T ss_pred             HHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchH---HHHHHHHHHHHHHhcCCccHHHHHHHhc
Confidence            455544443     56999999999888 66789999999998764322   3444555544                  


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeec
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADF  141 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~df  141 (257)
                                                        +.++|+.||.|||..   ||.||||||+|||-....   .+||+||
T Consensus       147 dd~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDf  223 (463)
T KOG0607|consen  147 DDTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDF  223 (463)
T ss_pred             ccceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeecc
Confidence                                              333799999999999   999999999999986554   4799999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh--cCCCCCccchhhHHHHHHHHHh
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY--TMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~--~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      .+...........      +-+-|.+...+|+.-|||||+-           +...  ...|+.++|.||+|+++|-|++
T Consensus       224 DLgSg~k~~~~~s------pastP~L~tPvGSAEfMAPEVV-----------d~fv~qA~~YDKrCDlwSLGvIlYImLs  286 (463)
T KOG0607|consen  224 DLGSGIKLNNDCS------PASTPELLTPVGSAEFMAPEVV-----------DVFVDQATFYDKRCDLWSLGVILYIMLS  286 (463)
T ss_pred             ccccccccCCCCC------CCCCccccCcccchhhcchhHH-----------hhhccccccccccccHHHHHHHHHHHHh
Confidence            8776543322211      1122344556899999998773           2222  3347999999999999999999


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      |++||.+.
T Consensus       287 GYpPFvG~  294 (463)
T KOG0607|consen  287 GYPPFVGH  294 (463)
T ss_pred             CCCCccCc
Confidence            99999863

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.90  E-value=2.7e-23  Score=174.86  Aligned_cols=157  Identities=25%  Similarity=0.411  Sum_probs=118.0

Q ss_pred             ccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccc---cHHHHHHHHHHHHH-------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETE---DSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~~e~~~-------------------------   98 (257)
                      +|.+.+.||.|+||.||+|...+++.+|+|.+......   .......+.+|++.                         
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            47889999999999999998878999999988654221   11223345555544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|++|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  157 (265)
T cd06631          81 MEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGL  157 (265)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhhccc
Confidence                                      234899999999999   999999999999999999999999999876532111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....       .......|+..|+|              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       158 ~~~~~-------~~~~~~~~~~~~~~--------------pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  211 (265)
T cd06631         158 HGTHS-------NMLKSMHGTPYWMA--------------PEVINESGYGRKSDIWSIGCTVFEMATGKPPLASM  211 (265)
T ss_pred             ccccc-------ccccccCCCccccC--------------hhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccC
Confidence            11000       00122357888999              55555566788999999999999999999999754

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=6e-24  Score=189.44  Aligned_cols=156  Identities=27%  Similarity=0.408  Sum_probs=128.2

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------   99 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------   99 (257)
                      ........|.+.+.||.|.|++|.+|.+ .++..||||.+.+........ +.+.+|++++                   
T Consensus        50 ~~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~-~k~~rev~imk~l~HPnIvkl~~v~~t~~  128 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKR-QKLGREVDIMKSLNHPNIVKLFSVIETEA  128 (596)
T ss_pred             cccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHH-HHHHHHHHHHHhcCCcceeeeeeeeeecc
Confidence            4455677899999999999999999954 579999999999877665543 3466777663                   


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      ..|+..|++|||.+   .|+|||||.+|++++.+-+++|+|||++..+
T Consensus       129 ~lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~  205 (596)
T KOG0586|consen  129 TLYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFF  205 (596)
T ss_pred             eeEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceee
Confidence                                            33899999999999   9999999999999999999999999999887


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ......              ...+|++.|.|||++.+..+             .++.+|+||+|+++|-+++|..||++
T Consensus       206 ~~~~~l--------------qt~cgsppyAaPEl~~g~~y-------------~gpe~D~Wslgvvly~LV~GsLPFDG  257 (596)
T KOG0586|consen  206 DYGLML--------------QTFCGSPPYAAPELFNGKKY-------------DGPEVDIWSLGVVLYALVEGSLPFDG  257 (596)
T ss_pred             cccccc--------------cccCCCCCccChHhhcCccc-------------CCcceehhhhhhhheeeeecccccCC
Confidence            643322              33689999999655544432             26899999999999999999999996

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=1.5e-23  Score=184.61  Aligned_cols=151  Identities=24%  Similarity=0.370  Sum_probs=112.1

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHH-H--------------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAF-V--------------------------------   89 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~-~--------------------------------   89 (257)
                      ...+|++.+.||+|+||.||+|... +++.||+|+........+.. .                                
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l  143 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDL  143 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccCCcH
Confidence            3457999999999999999999664 67889999754322111000 0                                


Q ss_pred             HHH---------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccc
Q 039073           90 KSF---------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL  160 (257)
Q Consensus        90 ~~~---------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  160 (257)
                      ..+         ..++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||.+........        
T Consensus       144 ~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~--------  212 (357)
T PHA03209        144 YTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPA--------  212 (357)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccCcc--------
Confidence            000         113344667999999999999   999999999999999999999999999864321111        


Q ss_pred             cCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC-CCCCc
Q 039073          161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG-THPGE  225 (257)
Q Consensus       161 ~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G-~~Pf~  225 (257)
                            .....||..|+|              ||.+.+..++.++|+|||||++|||+++ ..+|.
T Consensus       213 ------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~  258 (357)
T PHA03209        213 ------FLGLAGTVETNA--------------PEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFE  258 (357)
T ss_pred             ------cccccccccccC--------------CeecCCCCCCchhhHHHHHHHHHHHHHcCCcccc
Confidence                  112458889999              6666666789999999999999999985 44444

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=5.7e-24  Score=195.05  Aligned_cols=98  Identities=24%  Similarity=0.387  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      +..|++.||.|||++   +|+||||||+||+++.++.++|+|||++..........            .....||..|+|
T Consensus       272 i~~ql~~aL~yLH~~---gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~------------~~~~~gt~~y~a  336 (501)
T PHA03210        272 IMKQLLCAVEYIHDK---KLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAF------------DYGWVGTVATNS  336 (501)
T ss_pred             HHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccc------------cccccCCcCCCC
Confidence            455899999999999   99999999999999999999999999987654322110            112468999999


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC-CCc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH-PGE  225 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~-Pf~  225 (257)
                                    ||.+.+..++.++|||||||++|||++|.. ||.
T Consensus       337 --------------PE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~  370 (501)
T PHA03210        337 --------------PEILAGDGYCEITDIWSCGLILLDMLSHDFCPIG  370 (501)
T ss_pred             --------------chhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCcc
Confidence                          666666667899999999999999999875 443

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.90  E-value=2.4e-23  Score=178.57  Aligned_cols=150  Identities=28%  Similarity=0.446  Sum_probs=117.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|++.+.||.|++|.||++.. .+++.||+|.+.......   .+.+..|+.+                         
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   94 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   94 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEe
Confidence            47899999999999999999965 579999999986543222   1233334333                         


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.++.|||+.   +++|+||+|+||+++.++.++++|||++.........
T Consensus        95 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~  171 (297)
T cd06656          95 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  171 (297)
T ss_pred             ecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCccC
Confidence                                     334799999999999   9999999999999999999999999998754322211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             ....++..|++              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       172 ~-------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~  218 (297)
T cd06656         172 R-------------STMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (297)
T ss_pred             c-------------CcccCCccccC--------------HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            0             12356778999              55555566788999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.90  E-value=4.3e-23  Score=177.89  Aligned_cols=147  Identities=29%  Similarity=0.424  Sum_probs=114.6

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++.. .++..+|+|.+.....  ......+.+|+++                          
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIK--PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            4799999999999999999965 4688899998864321  2223344555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 -------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               ++.|++.|+.|||+ +   +++|+||+|+||+++.++.++|+|||++........
T Consensus        79 ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  155 (308)
T cd06615          79 EHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA  155 (308)
T ss_pred             eccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC---CEEECCCChHHEEEecCCcEEEccCCCccccccccc
Confidence                                     33489999999997 5   899999999999999999999999998765432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                     ....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||..
T Consensus       156 ---------------~~~~~~~~~~a--------------PE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~  200 (308)
T cd06615         156 ---------------NSFVGTRSYMS--------------PERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPP  200 (308)
T ss_pred             ---------------ccCCCCcCccC--------------hhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence                           12357788999              5555555578899999999999999999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.90  E-value=3e-23  Score=181.51  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=113.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH---------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA---------------------------   96 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~---------------------------   96 (257)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|++....... .....+..|+                           
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSE-IFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccc-cchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            47899999999999999999965 478999999986432111 1111122222                           


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           97 ---------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        97 ---------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                 ..++.|++.|++|||++   +++||||+|+||+++.++.++|+|||++.....
T Consensus        93 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~  169 (342)
T cd07879          93 QDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLARHADA  169 (342)
T ss_pred             ceEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCCcCCCC
Confidence                                       22445899999999999   999999999999999999999999999875422


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..                ....++..|+|||++.+.             ..++.++|+||||+++|||++|+.||.+.
T Consensus       170 ~~----------------~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slGvil~el~~g~~pf~~~  218 (342)
T cd07879         170 EM----------------TGYVVTRWYRAPEVILNW-------------MHYNQTVDIWSVGCIMAEMLTGKTLFKGK  218 (342)
T ss_pred             CC----------------CCceeeecccChhhhcCc-------------cccCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            11                113467789995544221             23578999999999999999999999864

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.90  E-value=2.7e-23  Score=178.23  Aligned_cols=151  Identities=26%  Similarity=0.422  Sum_probs=117.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|++.+.||.|++|.||+|.. .+++.|++|.+.......   .+.+..|+.+                         
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~---~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   94 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPK---KELIINEILVMKELKNPNIVNFLDSFLVGDELFVV   94 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCch---HHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEE
Confidence            45799999999999999999954 578999999886543221   2334444433                         


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.........
T Consensus        95 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  171 (296)
T cd06655          95 MEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK  171 (296)
T ss_pred             EEecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhccccccc
Confidence                                     334799999999999   9999999999999999999999999988754322111


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                   .....++..|+|              ||...+..++.++|+|||||++|++++|+.||...+
T Consensus       172 -------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~  219 (296)
T cd06655         172 -------------RSTMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN  219 (296)
T ss_pred             -------------CCCcCCCccccC--------------cchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                         012357788999              555555667889999999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.9e-23  Score=176.70  Aligned_cols=150  Identities=34%  Similarity=0.516  Sum_probs=118.1

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|++|.||+|... +++.|++|.+......  .....+.+|+..                          
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAE--DEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccc--hHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            47899999999999999999654 6889999998654321  123445555544                          


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..|++.|+.|||+.   +++|+||+|+||++++++.++++|||++......... 
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-  154 (274)
T cd06609          79 EYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSK-  154 (274)
T ss_pred             EeeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeecccccc-
Confidence                                    334899999999999   9999999999999999999999999998776433211 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....++..|++              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       155 ------------~~~~~~~~~y~~--------------PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~  201 (274)
T cd06609         155 ------------RNTFVGTPFWMA--------------PEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDL  201 (274)
T ss_pred             ------------cccccCCccccC--------------hhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence                        112356778999              55555556789999999999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.90  E-value=6.5e-23  Score=174.30  Aligned_cols=152  Identities=23%  Similarity=0.374  Sum_probs=113.1

Q ss_pred             ccc-ccceeeeecCceeEEEEE-----eCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           46 EEF-HIKYCIGTGGYGSVYKAE-----LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        46 ~~~-~~~~~lg~G~~g~V~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ++| ++.+.||+|+||+||++.     ..+++.||+|.+......  .....+.+|+++                     
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   80 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQ--QNTSGWKKEINILKTLYHENIVKYKGCCSEQGG   80 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccCh--HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            445 889999999999998763     245788999998754321  123445555554                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        81 ~~~~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  157 (283)
T cd05080          81 KGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV  157 (283)
T ss_pred             ceEEEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeeccccccc
Confidence                                           334899999999999   9999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ........          ......++..|++              ||......++.++|+||||+++|+|++|..||..
T Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~--------------PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~  212 (283)
T cd05080         158 PEGHEYYR----------VREDGDSPVFWYA--------------VECLKENKFSYASDVWSFGVTLYELLTHCDSKQS  212 (283)
T ss_pred             CCcchhhc----------cCCCCCCCceeeC--------------HhHhcccCCCcccccHHHHHHHHHHHhCCCCCCC
Confidence            43211000          0011234556888              5555556678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.90  E-value=3.1e-23  Score=176.10  Aligned_cols=152  Identities=26%  Similarity=0.370  Sum_probs=114.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|++|.||+|... +++.||+|++....... ...+.+..|+.+                          
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDP-VIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCc-cccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            57999999999999999999765 68899999886432211 111223334333                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.+++|||+.   +++|+||+|+||+++.++.++|+|||++.........
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  156 (286)
T cd07847          80 EYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD  156 (286)
T ss_pred             eccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCccc
Confidence                                     444899999999998   9999999999999999999999999998765432211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                   .....++..|+|||.              ..+ ..++.++|+||+|+++|+|++|+.||.+..
T Consensus       157 -------------~~~~~~~~~~~aPE~--------------~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~  205 (286)
T cd07847         157 -------------YTDYVATRWYRAPEL--------------LVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKS  205 (286)
T ss_pred             -------------ccCcccccccCCHHH--------------HhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence                         012346678899554              333 235789999999999999999999997643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.90  E-value=2.6e-23  Score=174.43  Aligned_cols=150  Identities=25%  Similarity=0.390  Sum_probs=115.1

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .++|++.+.||+|+||.||+|+..++..+|+|.+.......    ..+.+|+..                          
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE----DEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVT   78 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccH----HHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEE
Confidence            46789999999999999999987766679999887543322    223333333                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|++|||+.   +++|+||+|.||+++.++.++|+|||.+........
T Consensus        79 e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05113          79 EYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY  155 (256)
T ss_pred             EcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCce
Confidence                                      445899999999999   999999999999999999999999998875532211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..            .....++..|++              ||...+..++.++|+||||+++|+|++ |+.||...
T Consensus       156 ~~------------~~~~~~~~~y~~--------------pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  205 (256)
T cd05113         156 TS------------SVGSKFPVRWSP--------------PEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF  205 (256)
T ss_pred             ee------------cCCCccChhhCC--------------HHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence            00            011234567888              555555567889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.90  E-value=1.9e-23  Score=177.55  Aligned_cols=149  Identities=23%  Similarity=0.370  Sum_probs=109.9

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH-----------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA-----------------------------   96 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~-----------------------------   96 (257)
                      +|++.+.||+|+||.||+|... +|+.||+|++....... .....+..|+                             
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~-~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE-GVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccc-cCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            5889999999999999999664 68999999986432111 0011122222                             


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           97 ----------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        97 ----------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                            ..++.|+++|+.|||++   +++|+||+|+||+++.++.++|+|||++......... 
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-  155 (284)
T cd07839          80 YCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRC-  155 (284)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCC-
Confidence                                  22455899999999999   9999999999999999999999999998754322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                                  .....++..|+|||++...             ..++.++|+||+||++|+|++|..||.
T Consensus       156 ------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~l~tg~~p~~  201 (284)
T cd07839         156 ------------YSAEVVTLWYRPPDVLFGA-------------KLYSTSIDMWSAGCIFAELANAGRPLF  201 (284)
T ss_pred             ------------cCCCccccCCcChHHHhCC-------------cccCcHHHHHHHHHHHHHHHhcCCCCc
Confidence                        1123467789996554322             124789999999999999999988864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-24  Score=166.38  Aligned_cols=151  Identities=23%  Similarity=0.366  Sum_probs=113.7

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------------------  100 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~------------------------  100 (257)
                      ++|+..++||+|.+|+||+|+. .++.+||+|.++.....+ ..-.+..+|+.++.                        
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrldddde-gvpssalreicllkelkhknivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE-GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCC-CCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeH
Confidence            4677788999999999999954 578999999998654322 12234445554422                        


Q ss_pred             ---------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          101 ---------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       101 ---------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                 .|++.|+.|+|++   +++||||||.|.+|+.+|.++++|||+++.+..+...
T Consensus        81 e~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipvrc  157 (292)
T KOG0662|consen   81 EFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRC  157 (292)
T ss_pred             HHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCceEe
Confidence                                       2899999999999   9999999999999999999999999999876433211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      -             ....-|..|.+|              .+.-+.. |++..|+||.||++.|+.. |++.|.+.
T Consensus       158 y-------------saevvtlwyrpp--------------dvlfgakly~tsidmwsagcifaelanagrplfpg~  206 (292)
T KOG0662|consen  158 Y-------------SAEVVTLWYRPP--------------DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_pred             e-------------eceeeeeeccCc--------------ceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCC
Confidence            0             112335666664              4444333 6889999999999999986 99988864

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.90  E-value=2.4e-23  Score=177.53  Aligned_cols=153  Identities=24%  Similarity=0.335  Sum_probs=112.8

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      .++|++.+.||+|++|.||+|... +++.||||.+........  ...+..|+.                          
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGA--PFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCC--chhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            478999999999999999999665 688999999864322110  011122222                          


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .+..|++.||.|||++   +++|+||+|+||+++.++.++|+|||++........
T Consensus        82 ~e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  158 (291)
T cd07844          82 FEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK  158 (291)
T ss_pred             EecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCCCc
Confidence                                     2445899999999999   999999999999999999999999999865422111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             ....++..|+|||++...             ..++.++|+||+|+++|+|++|+.||....
T Consensus       159 ~~-------------~~~~~~~~~~aPE~~~~~-------------~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         159 TY-------------SNEVVTLWYRPPDVLLGS-------------TEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             cc-------------cccccccccCCcHHhhcC-------------cccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            10             112356778895543321             235789999999999999999999997543

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.90  E-value=6.4e-23  Score=172.76  Aligned_cols=152  Identities=30%  Similarity=0.398  Sum_probs=114.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+.    +...||||.+.....  ......+..|+.+                      
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS--DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCC--hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            467999999999999999999663    245799998875432  2223445555444                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.|++|||++   +++|+||+|+||+++.++.++++|||++....
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          81 MIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence                                          234899999999998   99999999999999999999999999988764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .......           .....++..|+|              ||...+..++.++|+||||+++|++++ |..||..
T Consensus       158 ~~~~~~~-----------~~~~~~~~~y~~--------------Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~  211 (266)
T cd05033         158 DSEATYT-----------TKGGKIPIRWTA--------------PEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWD  211 (266)
T ss_pred             cccccee-----------ccCCCCCccccC--------------hhhhccCCCccccchHHHHHHHHHHHccCCCCCCC
Confidence            2111100           011223567888              566666667889999999999999998 9999964

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.90  E-value=4.6e-23  Score=177.47  Aligned_cols=153  Identities=27%  Similarity=0.365  Sum_probs=117.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      +.+.|+..+.||+|+||.||+|... +++.||+|++...........+.+..|+.+                        
T Consensus        13 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~l   92 (307)
T cd06607          13 PEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWL   92 (307)
T ss_pred             cchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEE
Confidence            3567999999999999999999654 688999999865443333333445555443                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++.......
T Consensus        93 v~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~  169 (307)
T cd06607          93 VMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN  169 (307)
T ss_pred             EHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecCCCC
Confidence                                       334899999999999   99999999999999999999999999886543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                       ...++..|+|||++.+.           ....++.++|+||||+++|||++|+.||...
T Consensus       170 -----------------~~~~~~~y~aPE~~~~~-----------~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         170 -----------------SFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             -----------------CccCCccccCceeeecc-----------CCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence                             13467789995543211           1234678999999999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.90  E-value=3.2e-23  Score=173.69  Aligned_cols=151  Identities=30%  Similarity=0.447  Sum_probs=119.4

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------------   99 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------------   99 (257)
                      +|++.+.||.|+||.||+|... +++.||+|.+...........+.+.+|++++                          
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            5889999999999999999765 6899999999765433323345555555442                          


Q ss_pred             -------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073          100 -------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus       100 -------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                               ..|+++|+.|||++   +++|+||+|.||++++++.++|+|||.+........  
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--  155 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL--  155 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc--
Confidence                                     33799999999999   999999999999999999999999998876543221  


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                  .....|+..|++              ||...+..++.++|+||+|+++|++++|..||....
T Consensus       156 ------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  203 (258)
T cd05578         156 ------------TTSTSGTPGYMA--------------PEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHS  203 (258)
T ss_pred             ------------ccccCCChhhcC--------------HHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCC
Confidence                        112346778999              555555557889999999999999999999998654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.90  E-value=1.9e-23  Score=199.85  Aligned_cols=160  Identities=21%  Similarity=0.363  Sum_probs=116.7

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .....++|++.+.||.|+||.||+|... ++..||+|.+....... .....+..|+.+                     
T Consensus         8 ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e-~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~   86 (1021)
T PTZ00266          8 GESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKE-REKSQLVIEVNVMRELKHKNIVRYIDRFLNKAN   86 (1021)
T ss_pred             CccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCH-HHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCC
Confidence            3445678999999999999999999654 67789999887543222 223344445443                     


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCC----CCeEeeCCCCCCeEEcC------
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCT----LSIVHRDISSNNILLDS------  132 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~----~~i~H~dLkp~nill~~------  132 (257)
                                                          ++.||+.||.|||....    .+|+|+||||+||+++.      
T Consensus        87 ~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg  166 (1021)
T PTZ00266         87 QKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIG  166 (1021)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccc
Confidence                                                34489999999998521    25999999999999964      


Q ss_pred             -----------CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC
Q 039073          133 -----------NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV  201 (257)
Q Consensus       133 -----------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~  201 (257)
                                 ...++|+|||++........              .....||+.|+|||++...            ...+
T Consensus       167 ~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~--------------~~s~vGTp~YmAPEvL~ge------------~~~~  220 (1021)
T PTZ00266        167 KITAQANNLNGRPIAKIGDFGLSKNIGIESM--------------AHSCVGTPYYWSPELLLHE------------TKSY  220 (1021)
T ss_pred             cccccccccCCCCceEEccCCcccccccccc--------------ccccCCCccccCHHHHhcc------------CCCC
Confidence                       23489999999876532211              1224689999996654321            1236


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          202 TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       202 ~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      +.++|||||||++|+|++|+.||...
T Consensus       221 s~KSDVWSLG~ILYELLTGk~PF~~~  246 (1021)
T PTZ00266        221 DDKSDMWALGCIIYELCSGKTPFHKA  246 (1021)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCCCcC
Confidence            78999999999999999999999753

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.90  E-value=5.1e-23  Score=176.96  Aligned_cols=153  Identities=29%  Similarity=0.478  Sum_probs=112.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCC----EEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGK----VVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|+..+.||+|+||.||+|.. .+|.    .||+|.+.......  ....+..|+.+                     
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~   83 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPK--ANVEFMDEALIMASMDHPHLVRLLGVCLSPTI   83 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHH--HHHHHHHHHHHHHhCCCCCcccEEEEEcCCCc
Confidence            45688899999999999999965 3444    47888886543211  11223333332                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++....
T Consensus        84 ~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~  160 (303)
T cd05110          84 QLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLE  160 (303)
T ss_pred             eeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcccccccccc
Confidence                                          345899999999999   99999999999999999999999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....++..|++              ||...+..++.++|+||||+++||+++ |..||.+.
T Consensus       161 ~~~~~~~-----------~~~~~~~~~y~~--------------PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~  215 (303)
T cd05110         161 GDEKEYN-----------ADGGKMPIKWMA--------------LECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI  215 (303)
T ss_pred             Ccccccc-----------cCCCccccccCC--------------HHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            2221100           011234567888              566666667899999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.90  E-value=6.4e-23  Score=175.80  Aligned_cols=149  Identities=30%  Similarity=0.460  Sum_probs=108.2

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCC--EEEEEEcCccccccHHHHHHHHHHHH-------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGK--VVALKKLHQSETEDSAFVKSFQNEAH-------------------------   97 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~-------------------------   97 (257)
                      ++|++.+.||+|+||.||+|... ++.  .+++|.++.....  ...+.+..|+.                         
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~   79 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASE--NDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLY   79 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCH--HHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcce
Confidence            57999999999999999999654 343  4688887642111  11122222222                         


Q ss_pred             -------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           98 -------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        98 -------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                 .+..|++.|+.|||++   +++|+||||+||+++.++
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~  156 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENL  156 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCC
Confidence                                                       2344789999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++.........              .....+..|+|              ||...+..++.++|+|||||++
T Consensus       157 ~~kl~dfg~~~~~~~~~~~--------------~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwSlG~il  208 (297)
T cd05089         157 ASKIADFGLSRGEEVYVKK--------------TMGRLPVRWMA--------------IESLNYSVYTTKSDVWSFGVLL  208 (297)
T ss_pred             eEEECCcCCCccccceecc--------------CCCCcCccccC--------------chhhccCCCCchhhHHHHHHHH
Confidence            9999999987643211000              01122446888              6666666678999999999999


Q ss_pred             HHHHh-CCCCCccc
Q 039073          215 LKVLM-GTHPGELL  227 (257)
Q Consensus       215 ~ell~-G~~Pf~~~  227 (257)
                      |||++ |..||...
T Consensus       209 ~el~t~g~~pf~~~  222 (297)
T cd05089         209 WEIVSLGGTPYCGM  222 (297)
T ss_pred             HHHHcCCCCCCCCC
Confidence            99997 99999754

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.90  E-value=4e-23  Score=176.24  Aligned_cols=152  Identities=29%  Similarity=0.440  Sum_probs=113.5

Q ss_pred             ccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      -++|.+.+.||+|+||+||++..      .++..+|+|.+....   ....+.+..|+.+                    
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            36789999999999999999963      234568999886532   1122334444333                    


Q ss_pred             --------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           99 --------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        99 --------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                  +..|++.|++|||++   +++||||||+||+++.++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~  157 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENL  157 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCC
Confidence                                                        334899999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++...........           .....++..|+|              ||...+..++.++|+|||||++
T Consensus       158 ~~kl~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~sDiwslG~il  212 (288)
T cd05093         158 LVKIGDFGMSRDVYSTDYYRV-----------GGHTMLPIRWMP--------------PESIMYRKFTTESDVWSLGVVL  212 (288)
T ss_pred             cEEeccCCccccccCCceeec-----------CCCCCccccccC--------------HHHhccCCCCchhhHHHHHHHH
Confidence            999999999875432211000           011234667999              5666666678899999999999


Q ss_pred             HHHHh-CCCCCccc
Q 039073          215 LKVLM-GTHPGELL  227 (257)
Q Consensus       215 ~ell~-G~~Pf~~~  227 (257)
                      |+|++ |..||...
T Consensus       213 ~~l~t~g~~p~~~~  226 (288)
T cd05093         213 WEIFTYGKQPWYQL  226 (288)
T ss_pred             HHHHhCCCCCCCCC
Confidence            99998 99999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.90  E-value=2.5e-23  Score=177.48  Aligned_cols=156  Identities=26%  Similarity=0.383  Sum_probs=114.4

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHH------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAH------------------   97 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~------------------   97 (257)
                      ....++|++.+.||+|+||.||+|...      .+..||+|.+.......  ....+..|+.                  
T Consensus         2 ~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~   79 (288)
T cd05061           2 EVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHVVRLLGVVS   79 (288)
T ss_pred             cccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHH--HHHHHHHHHHHHHhCCCCCeeeEEEEEc
Confidence            346789999999999999999999532      24579999876432111  1122223322                  


Q ss_pred             -------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           98 -------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        98 -------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                 .++.|++.|+.|||++   +++|+||||+||+++.++
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~  156 (288)
T cd05061          80 KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDF  156 (288)
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCC
Confidence                                                       2445899999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++..........           ......++..|++              ||...+..++.++|+|||||++
T Consensus       157 ~~~L~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~~--------------pE~~~~~~~~~~~DvwslG~~l  211 (288)
T cd05061         157 TVKIGDFGMTRDIYETDYYR-----------KGGKGLLPVRWMA--------------PESLKDGVFTTSSDMWSFGVVL  211 (288)
T ss_pred             cEEECcCCcccccccccccc-----------ccCCCcccccccC--------------HHHhccCCCChHhHHHHHHHHH
Confidence            99999999987543221100           0011234567888              5666666678999999999999


Q ss_pred             HHHHh-CCCCCccc
Q 039073          215 LKVLM-GTHPGELL  227 (257)
Q Consensus       215 ~ell~-G~~Pf~~~  227 (257)
                      |||++ |..||.+.
T Consensus       212 ~el~~~~~~p~~~~  225 (288)
T cd05061         212 WEITSLAEQPYQGL  225 (288)
T ss_pred             HHHHhCCCCCCCCC
Confidence            99998 89999754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=5.9e-23  Score=172.83  Aligned_cols=157  Identities=26%  Similarity=0.457  Sum_probs=117.4

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc------HHHHHHHHHHHHH---------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED------SAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~------~~~~~~~~~e~~~---------------------   98 (257)
                      +|.+.+.||.|++|.||+|.. .+++.||+|.+.......      ....+.+..|+.+                     
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            478889999999999999965 468899999886543221      1223345555444                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.|++|||+.   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence                                          334899999999998   99999999999999999999999999988664


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ........       ........|+..|+|              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       158 ~~~~~~~~-------~~~~~~~~~~~~y~~--------------pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         158 ANSLSTKT-------NGARPSLQGSVFWMA--------------PEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             cccccCCc-------cccccccCCCcCccC--------------hhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            32111000       000112357788999              55555666788999999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3e-24  Score=191.02  Aligned_cols=166  Identities=28%  Similarity=0.391  Sum_probs=131.2

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEeC--CC--CE-EEEEEcCccccccHHHHHHHHHHHHHHHH--------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAELP--DG--KV-VALKKLHQSETEDSAFVKSFQNEAHVLST--------  101 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--~~--~~-vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--------  101 (257)
                      .+.-..|+..-++-.+.+.||+|+||.||+|...  ++  .. ||||..+..........+++..|++++..        
T Consensus       146 PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr  225 (474)
T KOG0194|consen  146 PIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVR  225 (474)
T ss_pred             cccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            3455677777888888999999999999999553  23  23 89999986443445557889999988433        


Q ss_pred             --------------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073          102 --------------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus       102 --------------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                                  +.+.|++|||.+   +++||||...|+|++.++.+|
T Consensus       226 ~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vK  302 (474)
T KOG0194|consen  226 FYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVK  302 (474)
T ss_pred             EEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEE
Confidence                                                        799999999999   999999999999999999999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      |+|||++...........             ...-...|+|              ||++....|+.++|||||||++||+
T Consensus       303 ISDFGLs~~~~~~~~~~~-------------~~klPirWLA--------------PEtl~~~~~s~kTDV~sfGV~~~Ei  355 (474)
T KOG0194|consen  303 ISDFGLSRAGSQYVMKKF-------------LKKLPIRWLA--------------PETLNTGIFSFKTDVWSFGVLLWEI  355 (474)
T ss_pred             eCccccccCCcceeeccc-------------cccCcceecC--------------hhhhccCccccccchhheeeeEEee
Confidence            999999876531111100             0012357999              8888888899999999999999999


Q ss_pred             Hh-CCCCCcccccc
Q 039073          218 LM-GTHPGELLSSL  230 (257)
Q Consensus       218 l~-G~~Pf~~~~~~  230 (257)
                      .+ |..||.+.+..
T Consensus       356 f~~g~~Py~g~~~~  369 (474)
T KOG0194|consen  356 FENGAEPYPGMKNY  369 (474)
T ss_pred             eccCCCCCCCCCHH
Confidence            88 99999987643

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.90  E-value=3.2e-23  Score=176.14  Aligned_cols=155  Identities=25%  Similarity=0.373  Sum_probs=116.6

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      +-|++.+.||+|+||.||+|... ++..+++|.+....   ....+.+..|+++                          
T Consensus         5 ~~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~   81 (282)
T cd06643           5 EFWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILI   81 (282)
T ss_pred             HHHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC---HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEE
Confidence            34788999999999999999665 57788999886432   2223445555443                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++........
T Consensus        82 e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~  158 (282)
T cd06643          82 EFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  158 (282)
T ss_pred             EecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccccc
Confidence                                      334899999999999   999999999999999999999999999865432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .....++..|+|||++....         ..+..++.++|+||+||++|+|++|++||....
T Consensus       159 ~-------------~~~~~~~~~y~aPE~~~~~~---------~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  212 (282)
T cd06643         159 R-------------RDSFIGTPYWMAPEVVMCET---------SKDRPYDYKADVWSLGITLIEMAQIEPPHHELN  212 (282)
T ss_pred             c-------------cccccccccccCHhhccccC---------CCCCCCCccchhhhHHHHHHHHccCCCCccccC
Confidence            1             12245788999977654221         123346789999999999999999999997543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.90  E-value=3.7e-23  Score=172.77  Aligned_cols=148  Identities=33%  Similarity=0.508  Sum_probs=117.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||.|+||.||+|... +++.+++|.+.....     .+.+..|++.                         
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~   76 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIV   76 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEE
Confidence            578999999999999999999765 488999999865321     2344444433                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++.......
T Consensus        77 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~  153 (256)
T cd06612          77 MEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTM  153 (256)
T ss_pred             EecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCc
Confidence                                       344899999999999   99999999999999999999999999987654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....++..|++              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       154 ~~-------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~  202 (256)
T cd06612         154 AK-------------RNTVIGTPFWMA--------------PEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI  202 (256)
T ss_pred             cc-------------cccccCCccccC--------------HHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            11             112346778999              55555666788999999999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.90  E-value=1.6e-23  Score=176.34  Aligned_cols=152  Identities=29%  Similarity=0.406  Sum_probs=114.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.++......   ...+.+|+.                          
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGED---FAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            46899999999999999999965 468899999986542211   112222322                          


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++........
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06645          85 MEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA  161 (267)
T ss_pred             EeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCccc
Confidence                                     2455899999999999   999999999999999999999999999865432111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .             .....|+..|+|||++...           ....++.++|+||+||++|+|++|..||..
T Consensus       162 ~-------------~~~~~~~~~y~aPE~~~~~-----------~~~~~~~~~DvwSlG~il~~l~~~~~p~~~  211 (267)
T cd06645         162 K-------------RKSFIGTPYWMAPEVAAVE-----------RKGGYNQLCDIWAVGITAIELAELQPPMFD  211 (267)
T ss_pred             c-------------cccccCcccccChhhhccc-----------cCCCCCchhhhHHHHHHHHHHhcCCCCccc
Confidence            1             1224678899996654211           123357899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.90  E-value=3.6e-23  Score=175.93  Aligned_cols=143  Identities=27%  Similarity=0.360  Sum_probs=105.7

Q ss_pred             eeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH-----------------------------------
Q 039073           53 CIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA-----------------------------------   96 (257)
Q Consensus        53 ~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~-----------------------------------   96 (257)
                      .||+|+||.||++.. .+++.+|+|.+.............+..|.                                   
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            389999999999965 46889999988654322111111111111                                   


Q ss_pred             -------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           97 -------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        97 -------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                         ..++.|++.|++|||+.   +++|+||||+||+++.++.++++|||++........     
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~-----  152 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP-----  152 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc-----
Confidence                               11445899999999999   999999999999999999999999999864422111     


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                ....|+..|+|||.              .. +..++.++|+||+||++|+|++|+.||...
T Consensus       153 ----------~~~~~~~~y~aPE~--------------~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  199 (279)
T cd05633         153 ----------HASVGTHGYMAPEV--------------LQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (279)
T ss_pred             ----------cCcCCCcCccCHHH--------------hcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCC
Confidence                      11357889999554              33 234688999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.90  E-value=5.9e-23  Score=176.67  Aligned_cols=164  Identities=24%  Similarity=0.336  Sum_probs=117.1

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++... +++.|++|.+.............+..|+.+                          
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            47899999999999999999654 688999999876533222223344455443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|+.|||++   +++|+||+|.||+++.++.++++|||+++........
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~  157 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTT  157 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCcCccc
Confidence                                     334799999999999   9999999999999999999999999988743222111


Q ss_pred             CCcccccc--CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          154 RPYEWALT--DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       154 ~~~~~~~~--~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ........  ..........++..|+|              ||......++.++|+||||+++||+++|..||.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~  218 (305)
T cd05609         158 NLYEGHIEKDTREFLDKQVCGTPEYIA--------------PEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFG  218 (305)
T ss_pred             cccccccccchhhccccCCccCccccC--------------chhccCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            10000000  00000112346778999              5555555678899999999999999999999975

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.90  E-value=5.3e-23  Score=174.55  Aligned_cols=153  Identities=26%  Similarity=0.447  Sum_probs=112.1

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH----------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA----------------------------   96 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~----------------------------   96 (257)
                      ++|++.+.||+|+||.||++.. .+|+.||+|+++........  ..+..|.                            
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQ--KRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHH--HHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            4799999999999999999965 47999999998754321111  1111111                            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           97 ---------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        97 ---------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                 ..++.|++.|+.|||++.  +++|+||+|+||+++.++.++|+|||++.....
T Consensus        79 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~  156 (283)
T cd06617          79 MEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD  156 (283)
T ss_pred             hhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence                                       124458999999999742  899999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ...              .....++..|+|||++.....          ...++.++|+||+||++|+|++|+.||..
T Consensus       157 ~~~--------------~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         157 SVA--------------KTIDAGCKPYMAPERINPELN----------QKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             ccc--------------cccccCCccccChhhcCCccc----------ccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            111              011346778999665432111          13357899999999999999999999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.90  E-value=3.3e-23  Score=175.97  Aligned_cols=163  Identities=26%  Similarity=0.419  Sum_probs=122.4

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH-------------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE-------------------   95 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e-------------------   95 (257)
                      .++.++..+.++|++.+.||.|+||.||+|.. .+++.+|+|.+.......    ..+..|                   
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~----~~~~~e~~~l~~~~~h~~i~~~~~~   81 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEE----EEIKLEINMLKKYSHHRNIATYYGA   81 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHH----HHHHHHHHHHHHhcCCCcEEEEeee
Confidence            46777778889999999999999999999965 468899999875432111    111111                   


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           96 -----------------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        96 -----------------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                               +..+..|++.|+.|||++   +++|+||+|+||+++.++
T Consensus        82 ~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~  158 (282)
T cd06636          82 FIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENA  158 (282)
T ss_pred             hhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCC
Confidence                                                     112345899999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++.........             .....|+..|+|||++....         .....++.++|+|||||++
T Consensus       159 ~~~l~dfg~~~~~~~~~~~-------------~~~~~~~~~y~aPE~l~~~~---------~~~~~~~~~~DvwslG~~l  216 (282)
T cd06636         159 EVKLVDFGVSAQLDRTVGR-------------RNTFIGTPYWMAPEVIACDE---------NPDATYDYRSDIWSLGITA  216 (282)
T ss_pred             CEEEeeCcchhhhhccccC-------------CCcccccccccCHhhcCccc---------CcCcCCCcccchhHHHHHH
Confidence            9999999997755322111             12245788999977654211         1133467899999999999


Q ss_pred             HHHHhCCCCCccc
Q 039073          215 LKVLMGTHPGELL  227 (257)
Q Consensus       215 ~ell~G~~Pf~~~  227 (257)
                      |+|++|..||...
T Consensus       217 ~el~~g~~p~~~~  229 (282)
T cd06636         217 IEMAEGAPPLCDM  229 (282)
T ss_pred             HHHHhCCCCcccc
Confidence            9999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.90  E-value=4.3e-23  Score=175.34  Aligned_cols=152  Identities=24%  Similarity=0.341  Sum_probs=114.7

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....... ...+.+.+|+++                          
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK-MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc-hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            47899999999999999999764 68899999986543222 122333344333                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++.........
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~  156 (286)
T cd07846          80 EFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV  156 (286)
T ss_pred             ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccc
Confidence                                     334899999999999   9999999999999999999999999998765332211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....++..|+|||.+...             ..++.++|+||||+++|+|++|++||...
T Consensus       157 -------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slG~~l~el~~g~~~~~~~  204 (286)
T cd07846         157 -------------YTDYVATRWYRAPELLVGD-------------TKYGRAVDIWAVGCLVTEMLTGEPLFPGD  204 (286)
T ss_pred             -------------cCcccceeeccCcHHhccc-------------cccCchHhHHHHHHHHHHHHcCCCCCCCC
Confidence                         0123467889996554321             22477899999999999999999999743

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.90  E-value=7.2e-23  Score=173.63  Aligned_cols=154  Identities=30%  Similarity=0.391  Sum_probs=112.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      ..++|.+.+.||+|++|.||+|...      ++..|++|.+.......  ....+..|+.+                   
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQ--DESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            3567999999999999999999653      46678999886432221  12334444333                   


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---Ce
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EA  136 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~  136 (257)
                                                             +..||+.|++|||+.   +++|+||+|+||+++.++   .+
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~  158 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVA  158 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcce
Confidence                                                   334899999999999   999999999999998654   58


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++..........           .......+..|+|              ||...+..++.++|+|||||++||
T Consensus       159 kl~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~DiwslG~il~e  213 (277)
T cd05036         159 KIADFGMARDIYRASYYR-----------KGGRAMLPIKWMP--------------PEAFLDGIFTSKTDVWSFGVLLWE  213 (277)
T ss_pred             EeccCccccccCCcccee-----------cCCCCCccHhhCC--------------HHHHhcCCcCchhHHHHHHHHHHH
Confidence            999999987653211100           0011123456888              565556667899999999999999


Q ss_pred             HHh-CCCCCccc
Q 039073          217 VLM-GTHPGELL  227 (257)
Q Consensus       217 ll~-G~~Pf~~~  227 (257)
                      |++ |+.||+..
T Consensus       214 l~~~g~~pf~~~  225 (277)
T cd05036         214 IFSLGYMPYPGR  225 (277)
T ss_pred             HHcCCCCCCCCC
Confidence            997 99999753

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.90  E-value=3.6e-23  Score=178.01  Aligned_cols=150  Identities=29%  Similarity=0.444  Sum_probs=109.1

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCC--EEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGK--VVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+. ++.  .+++|.++....  ......+.+|+.+                       
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~   83 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   83 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCC--HHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCc
Confidence            467899999999999999999654 454  457777654221  1112223333222                       


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           99 ---------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        99 ---------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                   +..|++.|++|||++   +++||||||+||+++.+
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~  160 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGEN  160 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCC
Confidence                                                         334799999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.++|+|||++........              .....++..|+|              ||...+..++.++|+|||||+
T Consensus       161 ~~~kl~dfg~~~~~~~~~~--------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~i  212 (303)
T cd05088         161 YVAKIADFGLSRGQEVYVK--------------KTMGRLPVRWMA--------------IESLNYSVYTTNSDVWSYGVL  212 (303)
T ss_pred             CcEEeCccccCcccchhhh--------------cccCCCcccccC--------------HHHHhccCCcccccchhhhhH
Confidence            9999999999763221110              011123456888              565556667889999999999


Q ss_pred             HHHHHh-CCCCCccc
Q 039073          214 ALKVLM-GTHPGELL  227 (257)
Q Consensus       214 l~ell~-G~~Pf~~~  227 (257)
                      +||+++ |..||...
T Consensus       213 l~ellt~g~~p~~~~  227 (303)
T cd05088         213 LWEIVSLGGTPYCGM  227 (303)
T ss_pred             HHHHHhcCCCCcccC
Confidence            999998 99999753

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.90  E-value=4.1e-23  Score=174.23  Aligned_cols=154  Identities=23%  Similarity=0.258  Sum_probs=107.3

Q ss_pred             eeeeecCceeEEEEEeCC---CCEEEEEEcCccccccHHHHHHHHHHHHH------------------------------
Q 039073           52 YCIGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------------   98 (257)
                      +.||+|+||.||+|....   ...+++|.+.....  ......+.+|+..                              
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASAT--PDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCC--hHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            358999999999995432   44688887764321  1112333444333                              


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|++|||++   +++||||||+||+++.++.++++|||++........
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~  155 (269)
T cd05042          79 LGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDY  155 (269)
T ss_pred             CCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccchh
Confidence                                      334899999999999   999999999999999999999999999865432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ...           .....++..|+|||++......       .....++.++|+|||||++|||++ |..||....
T Consensus       156 ~~~-----------~~~~~~~~~y~aPE~~~~~~~~-------~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~  214 (269)
T cd05042         156 YIT-----------KDCHAVPLRWLAPELVEIRGQD-------LLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS  214 (269)
T ss_pred             eec-----------cCCCCCcccccCHHHHhhcccc-------ccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC
Confidence            000           0112345679998876543211       122345789999999999999999 889997543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.90  E-value=7e-23  Score=173.28  Aligned_cols=154  Identities=28%  Similarity=0.409  Sum_probs=114.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      ..++|++.+.||+|+||.||+|...      ++..||+|.+......  .....+.+|+.+                   
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM--RERIEFLNEASVMKEFNCHHVVRLLGVVSTG   81 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCH--HHHHHHHHHHHHHHhCCCCceeEEEEEEcCC
Confidence            4578999999999999999999643      2468999998644211  112223333222                   


Q ss_pred             ------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCe
Q 039073           99 ------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA  136 (257)
Q Consensus        99 ------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~  136 (257)
                                                                ++.|++.|+.|||+.   +++|+||+|+||+++.++.+
T Consensus        82 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~  158 (277)
T cd05032          82 QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTV  158 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCE
Confidence                                                      345899999999998   99999999999999999999


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++..........           ......++..|+|              ||...+..++.++|+|||||++||
T Consensus       159 kl~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~e  213 (277)
T cd05032         159 KIGDFGMTRDIYETDYYR-----------KGGKGLLPVRWMA--------------PESLKDGVFTTKSDVWSFGVVLWE  213 (277)
T ss_pred             EECCcccchhhccCcccc-----------cCCCCCccccccC--------------HHHHhcCCCCcccchHHHHHHHHH
Confidence            999999987553322110           0112345678999              555555567889999999999999


Q ss_pred             HHh-CCCCCccc
Q 039073          217 VLM-GTHPGELL  227 (257)
Q Consensus       217 ll~-G~~Pf~~~  227 (257)
                      +++ |..||...
T Consensus       214 l~t~g~~p~~~~  225 (277)
T cd05032         214 MATLAEQPYQGL  225 (277)
T ss_pred             hhccCCCCCccC
Confidence            998 99999753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.90  E-value=4.9e-23  Score=174.74  Aligned_cols=154  Identities=21%  Similarity=0.349  Sum_probs=115.4

Q ss_pred             hccccccceeeeecCceeEEEEEeCC-----CCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPD-----GKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|....     +..|++|++....  .......+.+|+.+                    
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA--SEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            45789999999999999999997644     6789999886432  11123333344332                    


Q ss_pred             ----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEE
Q 039073           99 ----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV  138 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l  138 (257)
                                                              ++.+++.|+.|||++   +++|+||+|.||+++.++.+++
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl  158 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKI  158 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEE
Confidence                                                    344899999999999   9999999999999999999999


Q ss_pred             eeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH
Q 039073          139 ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL  218 (257)
Q Consensus       139 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell  218 (257)
                      +|||+++..........           .....++..|+|              ||...+..++.++||||||+++||++
T Consensus       159 ~d~g~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------pE~~~~~~~~~~~Di~slG~~l~el~  213 (280)
T cd05043         159 TDNALSRDLFPMDYHCL-----------GDNENRPVKWMA--------------LESLVNKEYSSASDVWSFGVLLWELM  213 (280)
T ss_pred             CCCCCcccccCCceEEe-----------CCCCCcchhccC--------------HHHHhcCCCCchhhHHHhHHHHHHHh
Confidence            99999875532221100           011234567899              55555556789999999999999999


Q ss_pred             h-CCCCCccc
Q 039073          219 M-GTHPGELL  227 (257)
Q Consensus       219 ~-G~~Pf~~~  227 (257)
                      + |+.||...
T Consensus       214 ~~g~~p~~~~  223 (280)
T cd05043         214 TLGQTPYVEI  223 (280)
T ss_pred             cCCCCCcCcC
Confidence            9 99999753

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.90  E-value=2.7e-23  Score=177.04  Aligned_cols=153  Identities=28%  Similarity=0.412  Sum_probs=112.1

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|+....||+|+||.||++.. .+++.||+|.+......  .....+..|+..                          
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE--KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh--HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            4677788999999999999965 46899999998754322  112223333322                          


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.+++.|++|||+..  +++||||+|+||+++.++.++|+|||++....
T Consensus        82 ~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616          82 MELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             EecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence                                          3347999999999631  89999999999999999999999999987543


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              ....|+..|+|||++....           ...++.++|+||+|+++|++++|+.||...
T Consensus       160 ~~~~~--------------~~~~~~~~y~aPE~~~~~~-----------~~~~~~~~Di~slG~il~el~~g~~p~~~~  213 (288)
T cd06616         160 DSIAK--------------TRDAGCRPYMAPERIDPSA-----------RDGYDVRSDVWSLGITLYEVATGKFPYPKW  213 (288)
T ss_pred             cCCcc--------------ccccCccCccCHHHhcccc-----------ccCCcchhhhhHHHHHHHHHHhCCCCchhc
Confidence            22111              1234678899966543221           124688999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.90  E-value=8.2e-23  Score=175.61  Aligned_cols=156  Identities=26%  Similarity=0.381  Sum_probs=114.2

Q ss_pred             HhhccccccceeeeecCceeEEEEEe--------CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL--------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      ....++|.+.+.||+|+||.||+|..        .++..||+|.+......  .....+..|+..               
T Consensus        11 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~   88 (304)
T cd05101          11 EFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATE--KDLSDLVSEMEMMKMIGKHKNIINLLG   88 (304)
T ss_pred             cccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccch--HHHHHHHHHHHHHHhhccCCCchheeE
Confidence            34567899999999999999999953        12457999988653211  112233333222               


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCC
Q 039073           99 -----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISS  125 (257)
Q Consensus        99 -----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp  125 (257)
                                                                           ++.|+++|+.|||++   +++|+||||
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp  165 (304)
T cd05101          89 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAA  165 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---Ceeeccccc
Confidence                                                                 234899999999999   999999999


Q ss_pred             CCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          126 NNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       126 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                      +||+++.++.++|+|||++...........           .....++..|+|              ||...+..++.++
T Consensus       166 ~Nili~~~~~~kl~D~g~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~  220 (304)
T cd05101         166 RNVLVTENNVMKIADFGLARDVNNIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRVYTHQS  220 (304)
T ss_pred             ceEEEcCCCcEEECCCccceeccccccccc-----------ccCCCCCceeeC--------------chhhccCCCCchh
Confidence            999999999999999999876543221100           011234567999              5555556678899


Q ss_pred             chhhHHHHHHHHHh-CCCCCccc
Q 039073          206 DVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       206 DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      |+||||+++|++++ |..||.+.
T Consensus       221 Di~slG~~l~el~~~g~~p~~~~  243 (304)
T cd05101         221 DVWSFGVLMWEIFTLGGSPYPGI  243 (304)
T ss_pred             hHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999998 88898754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.90  E-value=3.3e-23  Score=176.32  Aligned_cols=150  Identities=29%  Similarity=0.452  Sum_probs=116.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||++.. .+|+.||+|++.....  ....+.+.+|+++                         
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK--SSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC   81 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc--chHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence            46789999999999999999965 4688999998765322  2223455555544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                ++.+++.++.|||+ +   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        82 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~  158 (284)
T cd06620          82 MEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVH---RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI  158 (284)
T ss_pred             EecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhc---CeeccCCCHHHEEECCCCcEEEccCCcccchhhhc
Confidence                                      33479999999996 5   89999999999999999999999999876542211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .               ....|+..|+|              ||...+..++.++|+|||||++|++++|+.||+...
T Consensus       159 ~---------------~~~~~~~~~~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~  206 (284)
T cd06620         159 A---------------DTFVGTSTYMS--------------PERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSN  206 (284)
T ss_pred             c---------------CccccCcccCC--------------HHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence            1               12357888999              555555567889999999999999999999998543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.90  E-value=7e-23  Score=175.27  Aligned_cols=153  Identities=26%  Similarity=0.318  Sum_probs=113.2

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc--cHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE--DSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~~~~e~~--------------------------   97 (257)
                      +|++.+.||+|++|.||+|.. .+++.|+||++......  .......+..|+.                          
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            488899999999999999965 46899999999765332  0111112222222                          


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++.|+++||.|||++   +++|+||+|+||+++.++.++|+|||++........
T Consensus        81 ~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  157 (298)
T cd07841          81 FEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR  157 (298)
T ss_pred             EcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc
Confidence                                     2455899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             ....++..|+|||.+...             ..++.++|+||+||++|+|++|.+||.+.+
T Consensus       158 ~~-------------~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slG~il~e~~~g~~~~~~~~  207 (298)
T cd07841         158 KM-------------THQVVTRWYRAPELLFGA-------------RHYGVGVDMWSVGCIFAELLLRVPFLPGDS  207 (298)
T ss_pred             cc-------------cccccceeeeCHHHHhCC-------------CCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence            10             112356789996554221             235779999999999999999988887543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.90  E-value=6.3e-23  Score=175.08  Aligned_cols=168  Identities=28%  Similarity=0.419  Sum_probs=122.5

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH--------------------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ--------------------   93 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~--------------------   93 (257)
                      .+.++++..+.++|++.+.||+|+||.||++.. .+++.+|+|.+............+..                    
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            466778888899999999999999999999965 46889999998643211111000000                    


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCe
Q 039073           94 -------------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA  136 (257)
Q Consensus        94 -------------------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~  136 (257)
                                                           ..+..+..|++.|+.+||+.   +++|+||+|+||+++.++.+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~  167 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGV  167 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCE
Confidence                                                 01112445899999999999   99999999999999999999


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++..........             ....|+..|+|||++.....         ....++.++|+||+||++|+
T Consensus       168 kl~dfg~~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~---------~~~~~~~~~Di~slGvi~~e  225 (291)
T cd06639         168 KLVDFGVSAQLTSTRLRR-------------NTSVGTPFWMAPEVIACEQQ---------YDYSYDARCDVWSLGITAIE  225 (291)
T ss_pred             EEeecccchhcccccccc-------------cCccCCccccChhhhcCCCC---------cccccCCccchHHHHHHHHH
Confidence            999999987653221110             12346788999766532210         11235789999999999999


Q ss_pred             HHhCCCCCccc
Q 039073          217 VLMGTHPGELL  227 (257)
Q Consensus       217 ll~G~~Pf~~~  227 (257)
                      |++|+.||...
T Consensus       226 l~~g~~p~~~~  236 (291)
T cd06639         226 LGDGDPPLFDM  236 (291)
T ss_pred             HhhCCCCCCCC
Confidence            99999999754

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.90  E-value=7.8e-23  Score=171.69  Aligned_cols=155  Identities=25%  Similarity=0.408  Sum_probs=117.1

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|+||.||+|... ++..+++|++.......  ....+.+|+..                          
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT--SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch--HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            47999999999999999999654 68889999986543222  23344444433                          


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..|++.|+++||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence                                        334899999999999   9999999999999999999999999998766443


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .....         .......|+..|++||.              .... .++.++|+||||+++|+|++|+.||...+
T Consensus       156 ~~~~~---------~~~~~~~~~~~y~~Pe~--------------~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~  211 (267)
T cd06610         156 GDRTR---------KVRKTFVGTPCWMAPEV--------------MEQVHGYDFKADIWSFGITAIELATGAAPYSKYP  211 (267)
T ss_pred             ccccc---------cccccccCChhhcChHH--------------HccccCcCcccchHhHhHHHHHHHhCCCCccccC
Confidence            22110         00122457888999554              4333 46889999999999999999999997543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.90  E-value=3.3e-23  Score=178.45  Aligned_cols=154  Identities=27%  Similarity=0.367  Sum_probs=114.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH----------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN----------------------------   94 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~----------------------------   94 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|+++........ .....+                            
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGI-PISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCC-cchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            567899999999999999999965 46899999998643211100 000111                            


Q ss_pred             -------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           95 -------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        95 -------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                               ++..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        84 ~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~  160 (309)
T cd07845          84 FLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTYGL  160 (309)
T ss_pred             EEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeecCC
Confidence                                     1222556899999999999   999999999999999999999999999876643


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             .....++..|+|||++...             ..++.++|+||+|+++|+|++|++||.+.
T Consensus       161 ~~~~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         161 PAKP-------------MTPKVVTLWYRAPELLLGC-------------TTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             ccCC-------------CCcccccccccChhhhcCC-------------CCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            2211             0112346779995543221             23578999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.90  E-value=1.8e-22  Score=171.27  Aligned_cols=153  Identities=31%  Similarity=0.500  Sum_probs=114.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCC----EEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGK----VVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ..+|++.+.||+|+||.||+|... +|.    .+|+|.+.....  ......+.+|+..                     
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   83 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS--PKANKEILDEAYVMASVDHPHVVRLLGICLSSQV   83 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCce
Confidence            467899999999999999999653 333    589998875432  2223344444443                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        84 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~  160 (279)
T cd05057          84 QLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLD  160 (279)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCccccccc
Confidence                                          334899999999998   99999999999999999999999999988654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....++..|++              ||......++.++|+||||+++||+++ |+.||++.
T Consensus       161 ~~~~~~~-----------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  215 (279)
T cd05057         161 VDEKEYH-----------AEGGKVPIKWMA--------------LESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI  215 (279)
T ss_pred             Cccccee-----------cCCCcccccccC--------------HHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCC
Confidence            2221100           011123457888              555555567889999999999999998 99999864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.90  E-value=6.4e-23  Score=176.59  Aligned_cols=155  Identities=26%  Similarity=0.363  Sum_probs=112.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeC--------CCCEEEEEEcCccccccHHHHHHHHHHHH-----------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP--------DGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------   97 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------   97 (257)
                      ...++|.+.+.||+|+||.||++...        +...+|+|.++......  ....+..|+.                 
T Consensus        15 ~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (307)
T cd05098          15 VPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKHKNIINLLGA   92 (307)
T ss_pred             eehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChH--HHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            33578999999999999999999542        23579999997542111  1112222221                 


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCC
Q 039073           98 ---------------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSN  126 (257)
Q Consensus        98 ---------------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~  126 (257)
                                                                         .++.|++.|++|||++   +++|+||||+
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~  169 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAAR  169 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHH
Confidence                                                               2355899999999999   9999999999


Q ss_pred             CeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccc
Q 039073          127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD  206 (257)
Q Consensus       127 nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~D  206 (257)
                      ||+++.++.++|+|||.+...........           .....++..|+|              ||...+..++.++|
T Consensus       170 Nill~~~~~~kL~dfg~a~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~D  224 (307)
T cd05098         170 NVLVTEDNVMKIADFGLARDIHHIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRIYTHQSD  224 (307)
T ss_pred             heEEcCCCcEEECCCcccccccccchhhc-----------cccCCCccceeC--------------hHHhccCCCCcHHH
Confidence            99999999999999999875532111000           011223467999              55555556788999


Q ss_pred             hhhHHHHHHHHHh-CCCCCccc
Q 039073          207 VYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       207 iwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +|||||++|+|++ |..||.+.
T Consensus       225 vwslG~~l~el~~~g~~p~~~~  246 (307)
T cd05098         225 VWSFGVLLWEIFTLGGSPYPGV  246 (307)
T ss_pred             HHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999998 89998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.1e-23  Score=199.24  Aligned_cols=104  Identities=26%  Similarity=0.393  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc----cCCCCCC-ccccccCCCcccccccccccc
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH----VDSSNRP-YEWALTDTLPQVNKIIGCISY  176 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~gt~~y  176 (257)
                      +|++||.|+|++   |++||||||.||++|+++.+||+|||++....    ....... ...............+||..|
T Consensus       705 eIlEGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalY  781 (1351)
T KOG1035|consen  705 EILEGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALY  781 (1351)
T ss_pred             HHHHHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeee
Confidence            799999999999   99999999999999999999999999998722    1100000 000001111123457899999


Q ss_pred             hhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       177 ~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      +|||++.+..           +..|+.++|+||+|+++.||+.
T Consensus       782 vAPEll~~~~-----------~~~Yn~KiDmYSLGIVlFEM~y  813 (1351)
T KOG1035|consen  782 VAPELLSDTS-----------SNKYNSKIDMYSLGIVLFEMLY  813 (1351)
T ss_pred             ecHHHhcccc-----------cccccchhhhHHHHHHHHHHhc
Confidence            9977654332           1348999999999999999985

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.89  E-value=1.8e-22  Score=169.54  Aligned_cols=146  Identities=26%  Similarity=0.404  Sum_probs=108.0

Q ss_pred             eeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------------
Q 039073           53 CIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------------   98 (257)
Q Consensus        53 ~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------------   98 (257)
                      .||+|+||.||+|...   ++..||+|++.....  ....+.+.+|+.+                               
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~--~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENE--KSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccC--hHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCC
Confidence            4899999999999543   455799999875432  2223455556554                               


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++...........   
T Consensus        80 ~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~---  153 (257)
T cd05115          80 PLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK---  153 (257)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCcccee---
Confidence                                334899999999999   999999999999999999999999999875432211100   


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                             ......++..|+|              ||......++.++|+||||+++|++++ |+.||...
T Consensus       154 -------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  202 (257)
T cd05115         154 -------ARSAGKWPLKWYA--------------PECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM  202 (257)
T ss_pred             -------ccCCCCCCcccCC--------------HHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence                   0011223467888              565555567889999999999999996 99999754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.89  E-value=8.2e-23  Score=170.96  Aligned_cols=145  Identities=30%  Similarity=0.470  Sum_probs=112.8

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||++.. +++.||+|.+.....     .+.+..|+.+                         
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~~-----~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~   77 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDVT-----AQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVM   77 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc-CCCceEEEeecCcch-----HHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEE
Confidence            346799999999999999999965 577899998865321     1234444433                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        78 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~  154 (254)
T cd05083          78 ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV  154 (254)
T ss_pred             ECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceeccccC
Confidence                                       344899999999998   99999999999999999999999999887543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .                ....+..|+|              ||...+..++.++|+||||+++|+|++ |+.||...
T Consensus       155 ~----------------~~~~~~~y~~--------------pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         155 D----------------NSKLPVKWTA--------------PEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             C----------------CCCCCceecC--------------HHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence            1                1122456888              666666667899999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.89  E-value=6.6e-23  Score=176.64  Aligned_cols=157  Identities=26%  Similarity=0.387  Sum_probs=113.9

Q ss_pred             ccccceeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEA---------------------------   96 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~---------------------------   96 (257)
                      +|++.+.||+|++|.||+|...   +++.||+|.+...............+|+                           
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            4888999999999999999654   4789999999763211111111112222                           


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC----CCCeEEeecc
Q 039073           97 ------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS----NLEAFVADFG  142 (257)
Q Consensus        97 ------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~----~~~~~l~dfg  142 (257)
                                                    ..+..|++.|+.|||+.   +++|+||+|+||+++.    ++.++++|||
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg  157 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLG  157 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCCc
Confidence                                          22445899999999999   9999999999999999    8999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++..........          .......++..|+|||++...             ..++.++|+||||+++|+|++|++
T Consensus       158 ~~~~~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slG~~l~~l~~~~~  214 (316)
T cd07842         158 LARLFNAPLKPL----------ADLDPVVVTIWYRAPELLLGA-------------RHYTKAIDIWAIGCIFAELLTLEP  214 (316)
T ss_pred             cccccCCCcccc----------cccCCccccccccCHHHHhCC-------------CCCCcHHHHHHHHHHHHHHHhcCC
Confidence            988654322110          001234578889995544321             235789999999999999999999


Q ss_pred             CCccccc
Q 039073          223 PGELLSS  229 (257)
Q Consensus       223 Pf~~~~~  229 (257)
                      ||.+...
T Consensus       215 ~~~~~~~  221 (316)
T cd07842         215 IFKGREA  221 (316)
T ss_pred             CCcCCcc
Confidence            9986543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.89  E-value=5.4e-23  Score=173.04  Aligned_cols=155  Identities=26%  Similarity=0.453  Sum_probs=116.2

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc---cHHHHHHHHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE---DSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~~~~e~~~l-----------------------   99 (257)
                      +|+..+.||+|++|.||++.. .+++.||+|++......   .....+.+..|+..+                       
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            478889999999999999964 57899999998753321   122344555555542                       


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVD  150 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~  150 (257)
                                                  ..|++.|+.|||++   +++|+||+|+||+++.++ .++|+|||.+......
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~  157 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAK  157 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccccccc
Confidence                                        34899999999999   999999999999998776 5899999998766543


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......         ......|+..|+|||              ...+..++.++|+||+|+++|++++|..||...
T Consensus       158 ~~~~~~---------~~~~~~~~~~~~~PE--------------~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         158 GTGAGE---------FQGQLLGTIAFMAPE--------------VLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             cccCCc---------cccccccccceeCHh--------------HhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            211110         012235788899955              444445688999999999999999999999743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.89  E-value=1.9e-22  Score=168.16  Aligned_cols=145  Identities=25%  Similarity=0.367  Sum_probs=109.2

Q ss_pred             eeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------------------   99 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------------------   99 (257)
                      +.||+|+||.||+|...+++.+|+|.+......  .....+.+|+..+                                
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQ--ELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCH--HHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            368999999999998878889999998754322  2223455555442                                


Q ss_pred             --------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073          100 --------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus       100 --------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                          ..+++.++.|+|++   +++|+||+|+||+++.++.++++|||++..........     
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-----  150 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS-----  150 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceecccccccc-----
Confidence                                23799999999998   99999999999999999999999999986543221110     


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                             .....++..|+|              ||...+..++.++|+||||+++|++++ |..||...
T Consensus       151 -------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~  198 (250)
T cd05085         151 -------SGLKQIPIKWTA--------------PEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM  198 (250)
T ss_pred             -------CCCCCCcccccC--------------HHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Confidence                   011123456888              555555556889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.89  E-value=3.7e-23  Score=185.28  Aligned_cols=151  Identities=26%  Similarity=0.375  Sum_probs=119.1

Q ss_pred             hccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHH---------------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFV---------------------------------   89 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~---------------------------------   89 (257)
                      .++.|++...+|.|+|+.+-.+. ..+++..++|++.+.........                                 
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecCCceeeeeehhcc
Confidence            58899999999999999998884 45788899999976521110000                                 


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE-cCCCCeEEeeccCccccccCCCCCCcc
Q 039073           90 -----------KSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL-DSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        90 -----------~~~~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill-~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                 ..+..|+..++.+|+.|+.|||++   |++||||||+|||+ ++.++++|+|||.++..+....     
T Consensus       400 g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~-----  471 (612)
T KOG0603|consen  400 GGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCD-----  471 (612)
T ss_pred             ccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchhhc-----
Confidence                       012234445778999999999999   99999999999999 6999999999999987654411     


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                 ..+-|..|.|              ||+.....|+..+|+||||++||+|++|+.||..-
T Consensus       472 -----------tp~~t~~y~A--------------PEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~  516 (612)
T KOG0603|consen  472 -----------TPALTLQYVA--------------PEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAH  516 (612)
T ss_pred             -----------ccchhhcccC--------------hhhhccCCCCcchhhHHHHHHHHHHHhCCCccccC
Confidence                       1234678888              66666677899999999999999999999999853

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.89  E-value=5.2e-23  Score=176.14  Aligned_cols=149  Identities=29%  Similarity=0.409  Sum_probs=112.6

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      +.|+....||+|+||.||++.. .++..||||++......   ..+.+..|+..                          
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~   98 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQ---RRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVM   98 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHH---HHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEE
Confidence            4455557799999999999965 46889999988643211   12233344332                          


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              ++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++......... 
T Consensus        99 e~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~-  174 (292)
T cd06658          99 EFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPK-  174 (292)
T ss_pred             eCCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhccccccc-
Confidence                                    344899999999999   9999999999999999999999999998654322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....|+..|+|              ||...+..++.++|+||+|+++||+++|+.||...
T Consensus       175 ------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  221 (292)
T cd06658         175 ------------RKSLVGTPYWMA--------------PEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE  221 (292)
T ss_pred             ------------CceeecCccccC--------------HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                        122457888999              55555555788999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.89  E-value=1.5e-22  Score=175.00  Aligned_cols=156  Identities=25%  Similarity=0.370  Sum_probs=113.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC--------CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP--------DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      ....++|.+.+.||+|+||.||++...        +...+|+|.++.....  .....+..|+.+               
T Consensus         8 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (314)
T cd05099           8 EFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATD--KDLADLISEMELMKLIGKHKNIINLLG   85 (314)
T ss_pred             cccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCCh--HHHHHHHHHHHHHHhccCCCCeeeEEE
Confidence            444578999999999999999999531        2456899988753221  112233333322               


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCC
Q 039073           99 -----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISS  125 (257)
Q Consensus        99 -----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp  125 (257)
                                                                           ++.|++.|+.|||++   +++|+||||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp  162 (314)
T cd05099          86 VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAA  162 (314)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---Ceeeccccc
Confidence                                                                 234799999999999   999999999


Q ss_pred             CCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          126 NNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       126 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                      +||+++.++.++|+|||.++..........           .....++..|+|              ||...+..++.++
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~  217 (314)
T cd05099         163 RNVLVTEDNVMKIADFGLARGVHDIDYYKK-----------TSNGRLPVKWMA--------------PEALFDRVYTHQS  217 (314)
T ss_pred             eeEEEcCCCcEEEccccccccccccccccc-----------cccCCCCccccC--------------HHHHccCCcCccc
Confidence            999999999999999999876532211100           011223457899              5555556678899


Q ss_pred             chhhHHHHHHHHHh-CCCCCccc
Q 039073          206 DVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       206 DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      |+||||+++|++++ |..||.+.
T Consensus       218 DiwslG~~l~el~~~g~~p~~~~  240 (314)
T cd05099         218 DVWSFGILMWEIFTLGGSPYPGI  240 (314)
T ss_pred             hhhHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=4.8e-23  Score=173.57  Aligned_cols=160  Identities=29%  Similarity=0.441  Sum_probs=117.8

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHH------H-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKS------F-----------------------   92 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~------~-----------------------   92 (257)
                      .+.++|++.+.||.|++|.||+|... +++.+++|++............+      +                       
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            46789999999999999999999764 68899999986432211110000      0                       


Q ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           93 -----------------------------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        93 -----------------------------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                   ..++..+..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCcc
Confidence                                         001122455899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.........             .....|+..|+|||++.....         ....++.++|+||+|+++|++++|+.|
T Consensus       160 ~~~~~~~~~~-------------~~~~~~~~~y~aPE~~~~~~~---------~~~~~~~~~Dv~slG~il~~l~~g~~p  217 (275)
T cd06608         160 SAQLDSTLGR-------------RNTFIGTPYWMAPEVIACDEQ---------PDASYDARSDVWSLGITAIELADGKPP  217 (275)
T ss_pred             ceecccchhh-------------hcCccccccccCHhHhccccc---------ccCCccccccHHHhHHHHHHHHhCCCC
Confidence            8755322111             122457888999877643321         123357899999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |...
T Consensus       218 ~~~~  221 (275)
T cd06608         218 LCDM  221 (275)
T ss_pred             cccc
Confidence            9753

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.89  E-value=9.3e-23  Score=173.27  Aligned_cols=143  Identities=26%  Similarity=0.355  Sum_probs=105.6

Q ss_pred             eeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH-------------------------------------
Q 039073           53 CIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN-------------------------------------   94 (257)
Q Consensus        53 ~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~-------------------------------------   94 (257)
                      .||+|+||.||+|.. .+++.||+|.+.............+..                                     
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            379999999999965 468899999886543221110001111                                     


Q ss_pred             -----------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           95 -----------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        95 -----------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                       ++..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++........     
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~-----  152 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP-----  152 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC-----
Confidence                             1112445899999999999   999999999999999999999999999865432111     


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                ....|+..|+|||              ...+. .++.++|+||+|+++|+|++|+.||...
T Consensus       153 ----------~~~~~~~~y~aPE--------------~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         153 ----------HASVGTHGYMAPE--------------VLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             ----------cCcCCCcCCcCcH--------------HhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence                      1235788999954              44322 3688999999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.89  E-value=2.7e-24  Score=182.24  Aligned_cols=147  Identities=24%  Similarity=0.384  Sum_probs=118.4

Q ss_pred             ccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHH----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNE----------------------------   95 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e----------------------------   95 (257)
                      ..+|++...+|+|.||+|-.+ ...++..||+|+++.-..-.+    ..+-|                            
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYre----Aa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyr  163 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYRE----AALIEIEVLQKINESDPNGKFRCVQMRDWFDYR  163 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhh----HHHHHHHHHHHHHhcCCCCceEEEeeehhhhcc
Confidence            889999999999999999999 455688999999975432211    12222                            


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-------------
Q 039073           96 ------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-------------  132 (257)
Q Consensus        96 ------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-------------  132 (257)
                                                    ++.++.|+++++.|||+.   +++|.|||||||++.+             
T Consensus       164 ghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~  240 (415)
T KOG0671|consen  164 GHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKV  240 (415)
T ss_pred             CceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCcc
Confidence                                          333666999999999999   9999999999999842             


Q ss_pred             -------CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          133 -------NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       133 -------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                             ...+++.|||.+.......                ..+..|..|.|              ||++.+.+++.++
T Consensus       241 ~~~r~~ks~~I~vIDFGsAtf~~e~h----------------s~iVsTRHYRA--------------PEViLgLGwS~pC  290 (415)
T KOG0671|consen  241 CFIRPLKSTAIKVIDFGSATFDHEHH----------------STIVSTRHYRA--------------PEVILGLGWSQPC  290 (415)
T ss_pred             ceeccCCCcceEEEecCCcceeccCc----------------ceeeeccccCC--------------chheeccCcCCcc
Confidence                   2236889999887654433                23567899999              8889999999999


Q ss_pred             chhhHHHHHHHHHhCCCCCcccc
Q 039073          206 DVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       206 DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ||||+||+|+|+.+|...|+.-.
T Consensus       291 DvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  291 DVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             CceeeeeEEEEeeccceecccCC
Confidence            99999999999999999999754

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=8.9e-23  Score=173.64  Aligned_cols=153  Identities=27%  Similarity=0.419  Sum_probs=113.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||++... +++.||+|.+.....  ......+.+|+.+                          
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELD--ESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCM   78 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccC--HHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEE
Confidence            47899999999999999999665 789999998864321  1112233333332                          


Q ss_pred             ----------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 ----------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                  ++.+++.|+.|||+ +   +++|+||+|+||+++.++.++++|||++.....
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  155 (286)
T cd06622          79 EYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH---NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA  155 (286)
T ss_pred             eecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC---CEeeCCCCHHHEEECCCCCEEEeecCCcccccC
Confidence                                        33489999999996 5   899999999999999999999999999875532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ...               ....++..|+|||++.+...        .....++.++|+||+||++|++++|+.||+.
T Consensus       156 ~~~---------------~~~~~~~~y~aPE~~~~~~~--------~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  209 (286)
T cd06622         156 SLA---------------KTNIGCQSYMAPERIKSGGP--------NQNPTYTVQSDVWSLGLSILEMALGRYPYPP  209 (286)
T ss_pred             Ccc---------------ccCCCccCccCcchhcCCCC--------CccCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence            211               11346778999776533211        0222357899999999999999999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.89  E-value=1.7e-22  Score=168.78  Aligned_cols=146  Identities=24%  Similarity=0.352  Sum_probs=108.6

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      +.||+|+||.||+|.. .+++.||+|.+....  .......+..|+++                                
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG   78 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence            3689999999999965 478899999876432  22223455555554                                


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          +..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++...........   
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~---  152 (252)
T cd05084          79 DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYAST---  152 (252)
T ss_pred             cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCccccccccccc---
Confidence                                333899999999999   999999999999999999999999999875432110000   


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                              ......+..|+|              ||.+.+..++.++|+||||+++|++++ |..||...
T Consensus       153 --------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~  200 (252)
T cd05084         153 --------GGMKQIPVKWTA--------------PEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL  200 (252)
T ss_pred             --------CCCCCCceeecC--------------chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence                    001112346888              666666667889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.89  E-value=8.5e-23  Score=178.00  Aligned_cols=157  Identities=24%  Similarity=0.319  Sum_probs=116.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||.|++|.||+|.. .+|..||+|++........ ..+.+..|+.+                         
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   82 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPT-LAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKD   82 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccccc-chHHHHHHHHHHHhcCCCCccCHHHhccccCCCCce
Confidence            47899999999999999999965 4799999999875422111 12222233222                         


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        83 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  159 (334)
T cd07855          83 VYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLSS  159 (334)
T ss_pred             EEEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeecc
Confidence                                         445899999999999   999999999999999999999999999876543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......         .......|+..|++||.+...             ..++.++|+||+|+++|+|++|+.||.+.
T Consensus       160 ~~~~~~---------~~~~~~~~~~~y~~PE~~~~~-------------~~~~~~~Di~slG~~l~el~~g~~pf~~~  215 (334)
T cd07855         160 SPTEHK---------YFMTEYVATRWYRAPELLLSL-------------PEYTTAIDMWSVGCIFAEMLGRRQLFPGK  215 (334)
T ss_pred             cCcCCC---------cccccccccccccChHHhcCC-------------cccccccchHHHHHHHHHHHcCCCccCCC
Confidence            221110         001224578889995554221             23588999999999999999999999754

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.89  E-value=1e-22  Score=173.96  Aligned_cols=152  Identities=22%  Similarity=0.286  Sum_probs=111.0

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH------------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN------------------------------   94 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~------------------------------   94 (257)
                      ++|++.+.||+|+||.||+|.. .+++.||+|++........ ....+..                              
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~-~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEG-IPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccC-CchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            4799999999999999999965 4689999998764321100 0011111                              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeecc
Q 039073           95 -------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFG  142 (257)
Q Consensus        95 -------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg  142 (257)
                                                     ++..++.||+.||.|||+.   +++|+||+|+||+++. ++.++|+|||
T Consensus        80 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          80 SLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             eEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecc
Confidence                                           1122456899999999999   9999999999999998 8899999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++.........             .....+++.|+|||.+..             ...++.++|+||||+++|+|++|..
T Consensus       157 ~~~~~~~~~~~-------------~~~~~~~~~~~aPE~~~~-------------~~~~~~~~Di~slG~~l~~l~~g~~  210 (295)
T cd07837         157 LGRAFSIPVKS-------------YTHEIVTLWYRAPEVLLG-------------STHYSTPVDIWSVGCIFAEMSRKQP  210 (295)
T ss_pred             cceecCCCccc-------------cCCcccccCCCChHHhhC-------------CCCCCchHHHHHHHHHHHHHHcCCC
Confidence            98755322111             011245678999554321             1235789999999999999999999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||.+.
T Consensus       211 ~~~~~  215 (295)
T cd07837         211 LFPGD  215 (295)
T ss_pred             CCCCC
Confidence            99754

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=4.6e-23  Score=195.75  Aligned_cols=175  Identities=29%  Similarity=0.402  Sum_probs=132.6

Q ss_pred             ccccccceeeeecCceeEEEEEeC--CCC----EEEEEEcCccccccHHHHHHHHHHHHHHH------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP--DGK----VVALKKLHQSETEDSAFVKSFQNEAHVLS------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~l~------------------  100 (257)
                      .++-++...||+|.||.||.|...  +|.    .||||.+.+.  .+.+.+..|..|+.+++                  
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~--~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~  768 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL--SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG  768 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc--CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC
Confidence            566788899999999999999543  343    4899998764  34455778888887743                  


Q ss_pred             ----------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073          101 ----------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus       101 ----------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                              .+|++|+.||+++   .++||||...|+|++....+||+|
T Consensus       769 ~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaD  845 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIAD  845 (1025)
T ss_pred             CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcc
Confidence                                                    3899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-  219 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-  219 (257)
                      ||+|+......-..           ......-...|||              ||.+..+.++.++|||||||++||+++ 
T Consensus       846 FGlArDiy~~~yyr-----------~~~~a~lPvkWm~--------------PEsl~d~iFtskSDvWsFGVllWEifsl  900 (1025)
T KOG1095|consen  846 FGLARDIYDKDYYR-----------KHGEAMLPVKWMP--------------PESLKDGIFTSKSDVWSFGVLLWEIFSL  900 (1025)
T ss_pred             cchhHhhhhchhee-----------ccCccccceecCC--------------HHHHhhcccccccchhhhHHHHHHHHhC
Confidence            99999443222110           0011112357999              777777778999999999999999999 


Q ss_pred             CCCCCcccc------------cccCCCCCcchhhhhhcccCC
Q 039073          220 GTHPGELLS------------SLSSSSGPKIMLIDVLDQRLS  249 (257)
Q Consensus       220 G~~Pf~~~~------------~~~~~~~~~~~~~~i~~~~l~  249 (257)
                      |..||...+            .+.....+..++-++|..+..
T Consensus       901 G~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~  942 (1025)
T KOG1095|consen  901 GATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWK  942 (1025)
T ss_pred             CCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHcc
Confidence            999998644            345555565565566655554

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.89  E-value=2.3e-22  Score=168.53  Aligned_cols=151  Identities=30%  Similarity=0.504  Sum_probs=118.6

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||.|++|.||+|... +++.|++|++......  .....+..|+..                          
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE--EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            46899999999999999999665 5999999998765332  223445555443                          


Q ss_pred             -------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 -------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               +..|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+........
T Consensus        79 e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~  155 (264)
T cd06623          79 EYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLD  155 (264)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceecccCCC
Confidence                                     33489999999999 8   999999999999999999999999998876543222


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             ....++..|++              ||......++.++|+||||+++|++++|+.||....
T Consensus       156 ~~-------------~~~~~~~~y~~--------------pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         156 QC-------------NTFVGTVTYMS--------------PERIQGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             cc-------------cceeecccccC--------------HhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            11             12346778999              555555567889999999999999999999997664

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.89  E-value=1.4e-22  Score=172.95  Aligned_cols=100  Identities=25%  Similarity=0.431  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhh
Q 039073          100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL  179 (257)
Q Consensus       100 ~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  179 (257)
                      +.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++..........           ......++..|+| 
T Consensus       133 ~~~i~~~l~~LH~~---~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a-  197 (290)
T cd05045         133 AWQISRGMQYLAEM---KLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYV-----------KRSKGRIPVKWMA-  197 (290)
T ss_pred             HHHHHHHHHHHHHC---CeehhhhhhheEEEcCCCcEEeccccccccccCccchh-----------cccCCCCCccccC-
Confidence            44899999999999   99999999999999999999999999987543221100           0011234567888 


Q ss_pred             hHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       180 e~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                   ||...+..++.++|+||||+++|+|++ |..||.+.
T Consensus       198 -------------pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  233 (290)
T cd05045         198 -------------IESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  233 (290)
T ss_pred             -------------HHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC
Confidence                         555555567889999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=1.5e-22  Score=169.37  Aligned_cols=146  Identities=29%  Similarity=0.458  Sum_probs=114.5

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||.|++|.||+|... |+.||+|.+.....    ..+.+..|+.+                         
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v   78 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIV   78 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEE
Confidence            3568999999999999999999775 78899999976432    13344444433                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+......
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~  155 (256)
T cd05039          79 TEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQG  155 (256)
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccc
Confidence                                        344899999999999   9999999999999999999999999998765322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..                ...++..|+|              ||......++.++|+||||+++|++++ |+.||...
T Consensus       156 ~~----------------~~~~~~~~~a--------------pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  203 (256)
T cd05039         156 QD----------------SGKLPVKWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  203 (256)
T ss_pred             cc----------------cCCCcccccC--------------chhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            11                1123456888              555555567889999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.89  E-value=7.9e-23  Score=173.80  Aligned_cols=152  Identities=26%  Similarity=0.383  Sum_probs=115.7

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|++|.||+|... +++.|++|+++...... ...+.+..|++.                          
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDE-DVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccc-cchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            47999999999999999999664 68899999886532211 112333444333                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.........
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~  156 (288)
T cd07833          80 EYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARPAS  156 (288)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCccc
Confidence                                     344899999999999   9999999999999999999999999998766433210


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .            .....++..|+|||+              ..+. .++.++|+||+|+++|+|++|+.||.+.
T Consensus       157 ~------------~~~~~~~~~~~~PE~--------------~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  205 (288)
T cd07833         157 P------------LTDYVATRWYRAPEL--------------LVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD  205 (288)
T ss_pred             c------------ccCcccccCCcCCch--------------hcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            0            012346778999544              4444 4688999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.89  E-value=8.2e-23  Score=175.75  Aligned_cols=156  Identities=24%  Similarity=0.363  Sum_probs=115.8

Q ss_pred             HhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      .-..++|.+.+.||+|+||.||++..      .++..||+|.++.....  ...+.+..|+.+                 
T Consensus        31 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  108 (302)
T cd05055          31 EFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHS--SEREALMSELKIMSHLGNHENIVNLLGAC  108 (302)
T ss_pred             cccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCCh--HHHHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            34456799999999999999999953      23557999988754321  122344444433                 


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                           ++.+++.|+.|||+.   +++|+||||+||+++.++.++++||
T Consensus       109 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~df  185 (302)
T cd05055         109 TIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDF  185 (302)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCC
Confidence                                                 334899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-C
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-G  220 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G  220 (257)
                      |++...........           .....++..|+|              ||...+..++.++|+||+||++|++++ |
T Consensus       186 g~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DiwslGvil~el~t~g  240 (302)
T cd05055         186 GLARDIMNDSNYVV-----------KGNARLPVKWMA--------------PESIFNCVYTFESDVWSYGILLWEIFSLG  240 (302)
T ss_pred             cccccccCCCceee-----------cCCCCcccccCC--------------HhhhccCCCCcHhHHHHHHHHHHHHHhCC
Confidence            99875532211000           011234667999              565556667889999999999999998 9


Q ss_pred             CCCCccc
Q 039073          221 THPGELL  227 (257)
Q Consensus       221 ~~Pf~~~  227 (257)
                      ..||...
T Consensus       241 ~~p~~~~  247 (302)
T cd05055         241 SNPYPGM  247 (302)
T ss_pred             CCCcCCC
Confidence            9999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.89  E-value=1.4e-22  Score=170.97  Aligned_cols=153  Identities=23%  Similarity=0.325  Sum_probs=107.5

Q ss_pred             eeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------------   98 (257)
                      +.||+|+||.||+|...   ++..+|+|.++.......  ...+..|+.+                              
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQE--QMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP   78 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHH--HHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence            35899999999999653   345789998875432211  1233333332                              


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||.+........
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~  155 (269)
T cd05087          79 LGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDY  155 (269)
T ss_pred             CCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcce
Confidence                                      344899999999999   999999999999999999999999999864322111


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..           ......++..|+|||++.....       ......++.++|+||||+++|||++ |+.||...
T Consensus       156 ~~-----------~~~~~~~~~~y~aPE~~~~~~~-------~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  213 (269)
T cd05087         156 YV-----------TPDQLWVPLRWIAPELVDEVHG-------NLLVVDQTKESNVWSLGVTIWELFELGSQPYRHL  213 (269)
T ss_pred             ee-----------cCCCcCCcccccCHhHhccccc-------cccccCCCccchhHHHHHHHHHHHhCCCCCCCCC
Confidence            00           0112346778999777643211       0111235789999999999999996 99999753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.89  E-value=1.9e-22  Score=170.13  Aligned_cols=155  Identities=32%  Similarity=0.452  Sum_probs=113.8

Q ss_pred             cccccceeeeecCceeEEEEEeC-CC---CEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DG---KVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~---~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      .+|++.+.||+|+||.||+|... ++   ..||||.+....  .......+..|+..                       
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   81 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM   81 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE
Confidence            46889999999999999999654 33   369999987542  22234455566554                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|++|||++   +++|+||+|+||+++.++.++++|||++.....
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  158 (269)
T cd05065          82 IITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  158 (269)
T ss_pred             EEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCcccccccc
Confidence                                         334899999999999   999999999999999999999999999875533


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......      ..  ......+..|++              ||...+..++.++|+||+||++||+++ |..||...
T Consensus       159 ~~~~~~~------~~--~~~~~~~~~y~~--------------PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~  215 (269)
T cd05065         159 DTSDPTY------TS--SLGGKIPIRWTA--------------PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  215 (269)
T ss_pred             Ccccccc------cc--ccCCCcceeecC--------------HhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC
Confidence            2211100      00  000112346888              566666667889999999999999886 99999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.89  E-value=2e-24  Score=205.36  Aligned_cols=164  Identities=29%  Similarity=0.433  Sum_probs=123.7

Q ss_pred             HHHhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .+...+.++.-..+||.|.||+||.| ...+|...|+|-++.+.... .-...+..|..+                    
T Consensus      1229 ~lsnV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~-k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe 1307 (1509)
T KOG4645|consen 1229 SLSNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDH-KTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE 1307 (1509)
T ss_pred             HhccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCcccc-ccCcchHHHHHHHHhccCccccccCceeecHH
Confidence            44566888999999999999999999 55689999999887554321 112222222222                    


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|++|||++   ||+|||+||+||+++.+|.+|++|||.|...
T Consensus      1308 kv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki 1384 (1509)
T KOG4645|consen 1308 KVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKI 1384 (1509)
T ss_pred             HHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEe
Confidence                                           334899999999999   9999999999999999999999999998876


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..+....         -..+....||+.|||||++.+..           +.....++||||+||++.||+||+-||...
T Consensus      1385 ~~~~~~~---------~~el~~~~GT~~YMAPEvit~t~-----------~kG~~~A~DiWslGCVVlEM~tGkrPW~~~ 1444 (1509)
T KOG4645|consen 1385 KNNAQTM---------PGELQSMMGTPMYMAPEVITGTK-----------GKGHGGAADIWSLGCVVLEMATGKRPWAEL 1444 (1509)
T ss_pred             cCchhcC---------CHHHHhhcCCchhcCchhhcccc-----------cCCCCcchhhhcccceEEEeecCCCchhhc
Confidence            5442111         12345678999999955543221           123467999999999999999999999754

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.89  E-value=1.2e-22  Score=172.44  Aligned_cols=150  Identities=23%  Similarity=0.388  Sum_probs=112.4

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|++|.||+|... +|..||||+++.......  ...+..|+.+                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGT--PSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccc--hHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEe
Confidence            5889999999999999999765 688999999875432111  1122223222                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||+.   +++|+||+|+||++++++.++++|||.+........
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~  155 (284)
T cd07836          79 YMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN  155 (284)
T ss_pred             cCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc
Confidence                                      345899999999999   999999999999999999999999999875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....++..|++||++...             ..++.++|+||+|+++|++++|+.||.+.
T Consensus       156 ~-------------~~~~~~~~~y~~PE~~~~~-------------~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  204 (284)
T cd07836         156 T-------------FSNEVVTLWYRAPDVLLGS-------------RTYSTSIDIWSVGCIMAEMITGRPLFPGT  204 (284)
T ss_pred             c-------------cccccccccccChHHhcCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1             0113457789995554321             23578999999999999999999999754

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.89  E-value=1.2e-22  Score=173.66  Aligned_cols=153  Identities=28%  Similarity=0.401  Sum_probs=113.0

Q ss_pred             ccccccceeeeecCceeEEEEEeCC-----------------CCEEEEEEcCccccccHHHHHHHHHHHHH---------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD-----------------GKVVALKKLHQSETEDSAFVKSFQNEAHV---------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~-----------------~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------   98 (257)
                      .++|++.+.||+|+||.||+|....                 +..||+|.+......  ...+.+..|+++         
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD--NAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH--HHHHHHHHHHHHHHhcCCCCE
Confidence            4689999999999999999985432                 245899998754322  223344444333         


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCC
Q 039073           99 -----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISS  125 (257)
Q Consensus        99 -----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp  125 (257)
                                                                           +..|++.|+.|||++   +++|+||||
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp  158 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLAT  158 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccccch
Confidence                                                                 334799999999999   999999999


Q ss_pred             CCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          126 NNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       126 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                      +||+++.++.++++|||++...........           .....++..|+|              ||...+..++.++
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~  213 (296)
T cd05051         159 RNCLVGKNYTIKIADFGMSRNLYSSDYYRV-----------QGRAPLPIRWMA--------------WESVLLGKFTTKS  213 (296)
T ss_pred             hceeecCCCceEEccccceeecccCcceee-----------cCcCCCCceecC--------------HHHhhcCCCCccc
Confidence            999999999999999999875533221100           112335668999              5555555678999


Q ss_pred             chhhHHHHHHHHHh--CCCCCccc
Q 039073          206 DVYSFGVVALKVLM--GTHPGELL  227 (257)
Q Consensus       206 DiwSlG~~l~ell~--G~~Pf~~~  227 (257)
                      |+|||||++||+++  |..||...
T Consensus       214 Dv~slG~~l~el~~~~~~~p~~~~  237 (296)
T cd05051         214 DVWAFGVTLWEILTLCREQPYEHL  237 (296)
T ss_pred             hhhhhHHHHHHHHhcCCCCCCCCc
Confidence            99999999999988  77888653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.89  E-value=1.1e-22  Score=173.62  Aligned_cols=157  Identities=27%  Similarity=0.401  Sum_probs=114.8

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      +....++|++.+.||+|+||.||++...      ....+|+|.+......  .....+.+|+.+                
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~~   84 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATE--KDLSDLVSEMEMMKMIGKHKNIINLLGV   84 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCH--HHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            3445678999999999999999999643      2367899988754221  112223333221                


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCC
Q 039073           99 ----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSN  126 (257)
Q Consensus        99 ----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~  126 (257)
                                                                          +..|++.|+.|||+.   +++|+||||+
T Consensus        85 ~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~  161 (293)
T cd05053          85 CTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAAR  161 (293)
T ss_pred             EcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ccccccccee
Confidence                                                                345899999999999   9999999999


Q ss_pred             CeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccc
Q 039073          127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD  206 (257)
Q Consensus       127 nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~D  206 (257)
                      ||+++.++.++|+|||.+...........           .....++..|+|              ||...+..++.++|
T Consensus       162 Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~D  216 (293)
T cd05053         162 NVLVTEDHVMKIADFGLARDIHHIDYYRK-----------TTNGRLPVKWMA--------------PEALFDRVYTHQSD  216 (293)
T ss_pred             eEEEcCCCeEEeCccccccccccccceec-----------cCCCCCCccccC--------------HHHhccCCcCcccc
Confidence            99999999999999999886543221100           011223456888              55555556788999


Q ss_pred             hhhHHHHHHHHHh-CCCCCccc
Q 039073          207 VYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       207 iwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +|||||++||+++ |..||...
T Consensus       217 i~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         217 VWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             eeehhhHHHHHhcCCCCCCCCC
Confidence            9999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.89  E-value=1.1e-22  Score=171.38  Aligned_cols=154  Identities=31%  Similarity=0.414  Sum_probs=115.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-C---CCEEEEEEcCccccccHHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-D---GKVVALKKLHQSETEDSAFVKSFQNEAHVL---------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------------------   99 (257)
                      .++|++.+.||+|+||.||+|... +   +..+|+|.++....  ....+.+..|+.++                     
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT--EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            467899999999999999999653 2   33799999875432  22244556665542                     


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     ..|++.|+.+||+.   +++|+||+|+|++++.++.++++|||.+....
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence                                           33799999999999   99999999999999999999999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......          ......++..|++              ||...+..++.++|+||||+++|++++ |+.||...
T Consensus       158 ~~~~~~~----------~~~~~~~~~~y~~--------------pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~  213 (267)
T cd05066         158 DDPEAAY----------TTRGGKIPIRWTA--------------PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM  213 (267)
T ss_pred             cccceee----------ecCCCccceeecC--------------HhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence            3211100          0011223457888              666666667899999999999999886 99999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.89  E-value=1.4e-22  Score=176.97  Aligned_cols=153  Identities=24%  Similarity=0.292  Sum_probs=114.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH---------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA---------------------------   96 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~---------------------------   96 (257)
                      ..+|.+.+.||.|+||.||+|.. .+++.||||.+......... ...+..|+                           
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRID-AKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccch-hHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence            45799999999999999999965 57899999998653211111 11122222                           


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           97 ----------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        97 ----------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                  ..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++....
T Consensus        83 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858          83 DVYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             cEEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence                                        22455899999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             .....++..|+|||++...             ..++.++|+|||||++|+|++|+.||.+.
T Consensus       160 ~~~~~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~l~~g~~pf~~~  212 (337)
T cd07858         160 EKGDF-------------MTEYVVTRWYRAPELLLNC-------------SEYTTAIDVWSVGCIFAELLGRKPLFPGK  212 (337)
T ss_pred             CCccc-------------ccccccccCccChHHHhcC-------------CCCCCcccHHHHHHHHHHHHcCCCCCCCC
Confidence            32110             0123467789996554321             23578999999999999999999999753

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.89  E-value=3.6e-22  Score=169.71  Aligned_cols=151  Identities=27%  Similarity=0.434  Sum_probs=112.7

Q ss_pred             ccccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||++..     .++..||+|++.....   ...+.+..|+++                     
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTA---EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   79 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCH---HHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC
Confidence            46799999999999999999953     3588999999865421   223444555444                     


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++.
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          80 RNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             CceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcccc
Confidence                                             334899999999999   99999999999999999999999999988


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ..........          ......++..|+|              ||...+..++.++|+||||+++|||++|..|+.
T Consensus       157 ~~~~~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~  212 (284)
T cd05081         157 VLPQDKEYYK----------VREPGESPIFWYA--------------PESLTESKFSVASDVWSFGVVLYELFTYSDKSC  212 (284)
T ss_pred             cccCCCccee----------ecCCCCCceEeeC--------------HHHhccCCcChHHHHHHHHHHHHHHhhcCCcCC
Confidence            6643221100          0011123445888              555555556889999999999999999877764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.89  E-value=1.7e-22  Score=172.72  Aligned_cols=152  Identities=22%  Similarity=0.333  Sum_probs=111.9

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|++|.||+|... +|+.||+|.+....... .....+..|+.+                          
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDE-GVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVF   80 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccc-cchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEE
Confidence            67999999999999999999664 78899999986543221 111223333322                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~~~~  151 (257)
                                                ++.|++.|+.|||++   +++|+||+|+||+++. ++.++++|||++.......
T Consensus        81 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~  157 (294)
T PLN00009         81 EYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV  157 (294)
T ss_pred             ecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCCCc
Confidence                                      445899999999999   9999999999999985 4568999999987543221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....++..|++||.+...             ..++.++|+||+|+++|+|++|++||...
T Consensus       158 ~~-------------~~~~~~~~~y~~PE~~~~~-------------~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        158 RT-------------FTHEVVTLWYRAPEILLGS-------------RHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             cc-------------cccCceeecccCHHHHhCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            11             0112457789995543221             23578999999999999999999999753

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.89  E-value=1e-22  Score=178.23  Aligned_cols=100  Identities=30%  Similarity=0.418  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhh
Q 039073          100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL  179 (257)
Q Consensus       100 ~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  179 (257)
                      +.|++.|++|||++   +++||||||.||+++.++.++++|||++...........           .....++..|+| 
T Consensus       185 ~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a-  249 (343)
T cd05103         185 SFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR-----------KGDARLPLKWMA-  249 (343)
T ss_pred             HHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhh-----------cCCCCCCcceEC-
Confidence            44899999999999   999999999999999999999999999876432211000           011234567999 


Q ss_pred             hHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       180 e~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                   ||...+..++.++|+||||+++|++++ |..||...
T Consensus       250 -------------PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  285 (343)
T cd05103         250 -------------PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  285 (343)
T ss_pred             -------------cHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence                         555555567889999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.89  E-value=1.4e-22  Score=169.53  Aligned_cols=149  Identities=27%  Similarity=0.438  Sum_probs=113.9

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ..+|++.+.||.|+||.||++....+..+|+|.+........    .+..|+++                          
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~----~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEE----DFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVF   78 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHH----HHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEE
Confidence            457899999999999999999877678899999876543322    23333332                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.+++.++.+||+.   +++|+||+|+||+++.++.++|+|||.+........
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  155 (256)
T cd05112          79 EFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY  155 (256)
T ss_pred             EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcc
Confidence                                      344899999999999   999999999999999999999999998875432211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ..            .....++..|+|              ||...+..++.++|+||+|+++||+++ |+.||..
T Consensus       156 ~~------------~~~~~~~~~~~a--------------Pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  204 (256)
T cd05112         156 TS------------STGTKFPVKWSS--------------PEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN  204 (256)
T ss_pred             cc------------cCCCccchhhcC--------------HhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            00            011234567889              555555567889999999999999998 9999974

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.89  E-value=2.6e-22  Score=168.04  Aligned_cols=150  Identities=27%  Similarity=0.444  Sum_probs=115.1

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|+||.||++.. .+++.+|+|.+........ ..+.+..|+..                           
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEK-EKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHH-HHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            588999999999999999954 5788999998865432221 12333333332                           


Q ss_pred             ------------------------------HHHHHHHHHHHHh-----hCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 ------------------------------LSTSVAHALSYLH-----HDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH-----~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                    ++.+++.|+.+||     +.   +++|+||+|+||+++.++.++++|||.
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~---~i~h~dl~p~nili~~~~~~kl~d~g~  156 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN---TVLHRDLKPANIFLDANNNVKLGDFGL  156 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC---cceecCCCHHHEEEecCCCEEEecccc
Confidence                                          3448999999999     66   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.........             .....++..|++              ||...+..++.++|+||||+++|+|++|+.|
T Consensus       157 ~~~~~~~~~~-------------~~~~~~~~~~~~--------------pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p  209 (265)
T cd08217         157 AKILGHDSSF-------------AKTYVGTPYYMS--------------PEQLNHMSYDEKSDIWSLGCLIYELCALSPP  209 (265)
T ss_pred             cccccCCccc-------------ccccccCCCccC--------------hhhhcCCCCCchhHHHHHHHHHHHHHHCCCc
Confidence            8866432210             012357788999              5555555578899999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |...
T Consensus       210 ~~~~  213 (265)
T cd08217         210 FTAR  213 (265)
T ss_pred             ccCc
Confidence            9854

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.89  E-value=1.5e-22  Score=173.39  Aligned_cols=152  Identities=27%  Similarity=0.399  Sum_probs=111.1

Q ss_pred             cccccceeeeecCceeEEEEEeC-----------------CCCEEEEEEcCccccccHHHHHHHHHHHHH----------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-----------------DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-----------------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------   98 (257)
                      ++|++.+.||+|+||.||++...                 ++..||+|.+.....  ......+..|+.+          
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~--~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN--KNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCcc
Confidence            57999999999999999998432                 244689999875421  1112334444332          


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCC
Q 039073           99 ----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSN  126 (257)
Q Consensus        99 ----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~  126 (257)
                                                                          ++.|++.|++|||++   +++|+||||+
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~  159 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATR  159 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChh
Confidence                                                                345899999999999   9999999999


Q ss_pred             CeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccc
Q 039073          127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD  206 (257)
Q Consensus       127 nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~D  206 (257)
                      ||+++.++.++|+|||++..........           ......++..|++              ||...+..++.++|
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~-----------~~~~~~~~~~~~~--------------pe~~~~~~~~~~~D  214 (296)
T cd05095         160 NCLVGKNYTIKIADFGMSRNLYSGDYYR-----------IQGRAVLPIRWMS--------------WESILLGKFTTASD  214 (296)
T ss_pred             eEEEcCCCCEEeccCcccccccCCccee-----------ccCcCcCccccCC--------------HHHHhcCCccchhh
Confidence            9999999999999999987553221100           0011223456888              56556666789999


Q ss_pred             hhhHHHHHHHHHh--CCCCCccc
Q 039073          207 VYSFGVVALKVLM--GTHPGELL  227 (257)
Q Consensus       207 iwSlG~~l~ell~--G~~Pf~~~  227 (257)
                      +|||||++|||++  |..||...
T Consensus       215 iwSlG~~l~el~~~~~~~p~~~~  237 (296)
T cd05095         215 VWAFGVTLWEILTLCKEQPYSQL  237 (296)
T ss_pred             hhHHHHHHHHHHHhCCCCCcccc
Confidence            9999999999998  78898654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.89  E-value=1.2e-22  Score=174.43  Aligned_cols=165  Identities=25%  Similarity=0.315  Sum_probs=115.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      .++|++.+.||+|++|.||+|.. .+++.+|+|++......... ...+.+                             
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGF-PITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCc-chhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            68999999999999999999965 46889999988532211100 000111                             


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           95 ------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        95 ------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                    ++..+..|+++||+|||++   +++|+||+|+||++++++.++|+|||++
T Consensus        86 ~~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~  162 (311)
T cd07866          86 KRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLA  162 (311)
T ss_pred             cCceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCccc
Confidence                                          1222456899999999999   9999999999999999999999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      .............  ............++..|+|||++...             ..++.++|+||+|+++|+|++|++||
T Consensus       163 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Dv~slG~il~el~~g~~~~  227 (311)
T cd07866         163 RPYDGPPPNPKGG--GGGGTRKYTNLVVTRWYRPPELLLGE-------------RRYTTAVDIWGIGCVFAEMFTRRPIL  227 (311)
T ss_pred             hhccCCCcccccC--CcccccccccceeccCcCChHHhhCC-------------CccCchhHhHHHHHHHHHHHhCCCCC
Confidence            7654322111100  00001111234567889995544321             23578999999999999999999999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      .+.+
T Consensus       228 ~~~~  231 (311)
T cd07866         228 QGKS  231 (311)
T ss_pred             CCCC
Confidence            7543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.89  E-value=1.3e-22  Score=171.18  Aligned_cols=151  Identities=28%  Similarity=0.422  Sum_probs=109.9

Q ss_pred             cccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      |.+.+.||+|+||.||+|...    +++.||||.+........ ..+.+.+|+.                          
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSS-DIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChH-HHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            667889999999999999542    478899998865322111 1222222222                          


Q ss_pred             -------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           98 -------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        98 -------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                           .++.|++.|++|||+.   +++|+||||+||+++.++.++++|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~d  156 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVAD  156 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECc
Confidence                                                 2445899999999998   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-  219 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-  219 (257)
                      ||.+...........           .....++..|++              ||......++.++|+|||||++|++++ 
T Consensus       157 fg~~~~~~~~~~~~~-----------~~~~~~~~~~~~--------------pe~~~~~~~~~~sDi~slG~il~el~~~  211 (273)
T cd05074         157 FGLSKKIYSGDYYRQ-----------GCASKLPVKWLA--------------LESLADNVYTTHSDVWAFGVTMWEIMTR  211 (273)
T ss_pred             ccccccccCCcceec-----------CCCccCchhhcC--------------HhHHhcCccchhhhhHHHHHHHHHHhhC
Confidence            999876532221000           011223456777              666666667889999999999999999 


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      |++||...
T Consensus       212 g~~p~~~~  219 (273)
T cd05074         212 GQTPYAGV  219 (273)
T ss_pred             CCCCCCCC
Confidence            99998754

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.89  E-value=2.3e-22  Score=168.67  Aligned_cols=157  Identities=29%  Similarity=0.437  Sum_probs=118.8

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|+||.||+|.. .+++.|++|.++..... ....+.+..|+.+                           
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            588999999999999999965 46889999998765443 2334556666554                           


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..+++.|++|||+.   +++|+||+|+||+++.++.++|+|||.+..........
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~  156 (264)
T cd06626          80 YCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTM  156 (264)
T ss_pred             cCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcc
Confidence                                    234899999999999   99999999999999999999999999987664332211


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..         ......++..|++||++....           ....+.++|+||||+++|++++|+.||...
T Consensus       157 ~~---------~~~~~~~~~~~~~PE~~~~~~-----------~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         157 GE---------EVQSLAGTPAYMAPEVITGGK-----------GKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             cc---------cccCCcCCcCccChhhccCCC-----------CCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence            00         012245678899966543221           112588999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.89  E-value=2.1e-22  Score=176.23  Aligned_cols=153  Identities=25%  Similarity=0.356  Sum_probs=115.3

Q ss_pred             HhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------------   97 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------------   97 (257)
                      -...++|++.+.||+|+||.||++. ..++..||||++...... ......+..|+.                       
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQS-ELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSL   89 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCCccceeeeecCCccc
Confidence            3457889999999999999999995 457999999998643211 111122223322                       


Q ss_pred             --------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           98 --------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        98 --------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                      .++.|++.|++|||++   +++|+||+|+||+++.++.++++|||++.
T Consensus        90 ~~~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~~  166 (343)
T cd07880          90 DRFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLAR  166 (343)
T ss_pred             cccceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccccc
Confidence                                            2445899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ......                ....++..|++||++...             ..++.++|+||+|+++|++++|+.||.
T Consensus       167 ~~~~~~----------------~~~~~~~~y~aPE~~~~~-------------~~~~~~~Di~slG~ll~~l~~g~~pf~  217 (343)
T cd07880         167 QTDSEM----------------TGYVVTRWYRAPEVILNW-------------MHYTQTVDIWSVGCIMAEMLTGKPLFK  217 (343)
T ss_pred             ccccCc----------------cccccCCcccCHHHHhCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            543211                113457789996554321             235789999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       218 ~~  219 (343)
T cd07880         218 GH  219 (343)
T ss_pred             CC
Confidence            54

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.89  E-value=1e-22  Score=172.67  Aligned_cols=151  Identities=29%  Similarity=0.457  Sum_probs=117.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ...|+..+.||.|+||.||+|.. .++..||+|.+.....  ......+..|+.+                         
T Consensus         3 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (277)
T cd06640           3 EELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWII   80 (277)
T ss_pred             HHhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            34688889999999999999965 4688999998865322  1223455555554                         


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|++|||+.   +++|+||+|+||+++.++.++++|||++.........
T Consensus        81 ~e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06640          81 MEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             EecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCccc
Confidence                                     233799999999998   9999999999999999999999999998765322111


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....++..|+|              ||...+..++.++|+||||+++|||++|+.||...
T Consensus       158 -------------~~~~~~~~~y~a--------------pE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  204 (277)
T cd06640         158 -------------RNTFVGTPFWMA--------------PEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDM  204 (277)
T ss_pred             -------------cccccCcccccC--------------HhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCc
Confidence                         012346777888              55555666788999999999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.89  E-value=2.9e-22  Score=169.21  Aligned_cols=154  Identities=27%  Similarity=0.432  Sum_probs=112.6

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc-------cHHHHHHHHHHHHH--------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE-------DSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~-------~~~~~~~~~~e~~~--------------------   98 (257)
                      +|...+.||.|+||.||+|.. .+|+.||+|.++.....       .....+.+..|+..                    
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            578899999999999999965 46889999988642111       11112334444333                    


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++...
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeeccccccc
Confidence                                           344899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......           ......|+..|++||++....            ..++.++|+||+|+++|++++|..||..
T Consensus       159 ~~~~~~~-----------~~~~~~~~~~y~~PE~~~~~~------------~~~~~~~Dv~slG~~l~~l~~g~~p~~~  214 (272)
T cd06629         159 DDIYDND-----------QNMSMQGSVFWMAPEVIHSYS------------QGYSAKVDIWSLGCVVLEMFAGRRPWSD  214 (272)
T ss_pred             ccccccc-----------ccccccCCccccCHHHhcccc------------CCCCccchhHHHHHHHHHHHhCCCCCcC
Confidence            3211100           011235778899955543221            1257899999999999999999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.89  E-value=7.1e-23  Score=173.55  Aligned_cols=150  Identities=31%  Similarity=0.464  Sum_probs=115.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      +.|+..+.||.|+||.||+|.. .+++.||+|.+......  ...+.+..|+..                          
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIM   81 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccch--HHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEE
Confidence            4577888899999999999965 46888999988644322  223445555544                          


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              ++.+++.|+.|||+.   +++|+||+|+||+++.++.++++|||++......... 
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-  157 (277)
T cd06642          82 EYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK-  157 (277)
T ss_pred             EccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcchh-
Confidence                                    334899999999998   9999999999999999999999999998754322110 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....|+..|++              ||...+..++.++|+||||+++||+++|+.||...
T Consensus       158 ------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  204 (277)
T cd06642         158 ------------RNTFVGTPFWMA--------------PEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDL  204 (277)
T ss_pred             ------------hhcccCcccccC--------------HHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCccc
Confidence                        012346778999              55555556788999999999999999999999743

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.89  E-value=2.4e-22  Score=173.94  Aligned_cols=151  Identities=27%  Similarity=0.388  Sum_probs=115.7

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ..|+..+.||+|+||.||++.. .++..||+|++.............+..|+..                          
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            3477889999999999999965 4688999999875543333334455555544                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|+.|||++   +++|+||+|.||+++.++.++|+|||++......   
T Consensus       105 e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~---  178 (317)
T cd06635         105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA---  178 (317)
T ss_pred             eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc---
Confidence                                     233799999999999   9999999999999999999999999987643211   


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....|+..|+|||++...           ....++.++|+|||||++|+|++|+.||...
T Consensus       179 --------------~~~~~~~~y~aPE~~~~~-----------~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         179 --------------NSFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             --------------ccccCCccccChhhhhcC-----------CCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                          123467789996554211           1233678999999999999999999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.89  E-value=2.1e-22  Score=175.56  Aligned_cols=157  Identities=25%  Similarity=0.359  Sum_probs=112.5

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC--------CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP--------DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      +.....+|++.+.||+|+||.||+|...        .+..||+|.++.....  ...+.+..|+.+              
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~iv~~~   84 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD--KDLSDLVSEMEMMKMIGKHKNIINLL   84 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCH--HHHHHHHHHHHHHHhhcCCCCeeeee
Confidence            3444567999999999999999999531        1236899988643211  112222222221              


Q ss_pred             ------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCC
Q 039073           99 ------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDIS  124 (257)
Q Consensus        99 ------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLk  124 (257)
                                                                            ++.|++.|+.|||++   +++|+|||
T Consensus        85 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlk  161 (334)
T cd05100          85 GACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLA  161 (334)
T ss_pred             EEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ceeccccc
Confidence                                                                  344899999999999   99999999


Q ss_pred             CCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc
Q 039073          125 SNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK  204 (257)
Q Consensus       125 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~  204 (257)
                      |+||+++.++.++|+|||+++..........           .....++..|+|              ||...+..++.+
T Consensus       162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~  216 (334)
T cd05100         162 ARNVLVTEDNVMKIADFGLARDVHNIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRVYTHQ  216 (334)
T ss_pred             cceEEEcCCCcEEECCcccceeccccccccc-----------ccCCCcCceEcC--------------HHHhccCCcCch
Confidence            9999999999999999999875532211100           011233467999              555555667889


Q ss_pred             cchhhHHHHHHHHHh-CCCCCccc
Q 039073          205 CDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       205 ~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +|+||||+++|||++ |..||.+.
T Consensus       217 ~Di~slG~il~el~~~g~~p~~~~  240 (334)
T cd05100         217 SDVWSFGVLLWEIFTLGGSPYPGI  240 (334)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999998 89999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.89  E-value=1.6e-22  Score=173.66  Aligned_cols=158  Identities=22%  Similarity=0.331  Sum_probs=114.9

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHH---------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQN---------------------------   94 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~---------------------------   94 (257)
                      ...++|++.+.||+|+||.||+|... +++.||||.+........ ....+.+                           
T Consensus         9 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (310)
T cd07865           9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEG-FPITALREIKILQLLKHENVVNLIEICRTKATPY   87 (310)
T ss_pred             chhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCC-chhHHHHHHHHHHhCCCCCccceEEEEecccccc
Confidence            34568999999999999999999654 689999998854321110 0001111                           


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           95 --------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        95 --------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                      ++..+..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||
T Consensus        88 ~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          88 NRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             cCCCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCC
Confidence                                            2223455899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      ++............         ......++..|+|||++              .+. .++.++|+||+|+++|+|++|+
T Consensus       165 ~~~~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~--------------~~~~~~~~~~Di~slG~~l~el~t~~  221 (310)
T cd07865         165 LARAFSLSKNSKPN---------RYTNRVVTLWYRPPELL--------------LGERDYGPPIDMWGAGCIMAEMWTRS  221 (310)
T ss_pred             CcccccCCcccCCC---------CccCcccCccccCcHHh--------------cCCcccCchhhhHHHHHHHHHHHhCC
Confidence            98766433221100         01123467789995544              332 2477999999999999999999


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||.+.
T Consensus       222 ~~~~~~  227 (310)
T cd07865         222 PIMQGN  227 (310)
T ss_pred             CCCCCC
Confidence            999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.89  E-value=2.2e-22  Score=168.32  Aligned_cols=149  Identities=23%  Similarity=0.362  Sum_probs=116.3

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------------   99 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------------   99 (257)
                      +|++.+.||.|+||.||.+.. .+++.+++|++........ ....+.+|+.++                          
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEK-ERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchh-HHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            589999999999999999954 5688999999865433222 234455555542                          


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 ..|++.++.|||+.   +++|+||+|+||+++.++.++++|||.+........
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEcccccc
Confidence                                       33799999999998   999999999999999999999999999876533221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .             .....++..|+|              ||...+..++.++|+||+|+++|+|++|..||+.
T Consensus       157 ~-------------~~~~~~~~~y~a--------------pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08221         157 M-------------AETVVGTPYYMS--------------PELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA  203 (256)
T ss_pred             c-------------ccccCCCccccC--------------HhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC
Confidence            0             122457888999              5555555567899999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.89  E-value=1.2e-22  Score=172.45  Aligned_cols=150  Identities=25%  Similarity=0.346  Sum_probs=111.4

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|+..+.||.|++|.||+|... +++.||||++........ ....+..|++.                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEG-VPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   79 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccc-cchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEee
Confidence            5889999999999999999664 688999998865322111 11223333322                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.|++.|++|||++   +++|+||+|+||+++.++.++++|||++.........
T Consensus        80 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~  156 (284)
T cd07860          80 FLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  156 (284)
T ss_pred             ccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCccc
Confidence                                     344899999999999   9999999999999999999999999998755322111


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             ....++..|+|||              ...+.. ++.++|+||||+++|+|++|+.||...
T Consensus       157 ~-------------~~~~~~~~y~aPE--------------~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  204 (284)
T cd07860         157 Y-------------THEVVTLWYRAPE--------------ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  204 (284)
T ss_pred             c-------------ccccccccccCCe--------------EEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            0             1123567899954              433322 477899999999999999999999653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.89  E-value=3e-22  Score=168.70  Aligned_cols=154  Identities=32%  Similarity=0.455  Sum_probs=113.1

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CC---CEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DG---KVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~---~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++|+..+.||+|+||.||+|... ++   ..+++|.+......  ...+.+..|+++                      
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTE--KQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPA   81 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCH--HHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCc
Confidence            457899999999999999999654 33   37899988654221  123345555444                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..+++.|+.|||+.   +++|+||+|+||+++.++.++++|||++....
T Consensus        82 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  158 (268)
T cd05063          82 MIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLE  158 (268)
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceecc
Confidence                                          334799999999999   99999999999999999999999999987553


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ........          ......+..|++              ||...+..++.++|+||||+++||+++ |+.||...
T Consensus       159 ~~~~~~~~----------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~  214 (268)
T cd05063         159 DDPEGTYT----------TSGGKIPIRWTA--------------PEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM  214 (268)
T ss_pred             ccccccee----------ccCCCcCceecC--------------HHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            22111000          001122346888              565555667889999999999999997 99999643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.89  E-value=1.1e-22  Score=174.51  Aligned_cols=147  Identities=27%  Similarity=0.395  Sum_probs=111.5

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |+....||.|+||.||++.. .+++.||+|.+.......   ...+.+|+..                            
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~---~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~   99 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQR---RELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEF   99 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccch---HHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEec
Confidence            44456799999999999965 468899999986432221   2233334332                            


Q ss_pred             ----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCc
Q 039073           99 ----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY  156 (257)
Q Consensus        99 ----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  156 (257)
                                            ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.........   
T Consensus       100 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~---  173 (297)
T cd06659         100 LQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK---  173 (297)
T ss_pred             CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccccc---
Confidence                                  344899999999999   9999999999999999999999999988654322111   


Q ss_pred             cccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       157 ~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                .....|+..|+|              ||...+..++.++|+||+|+++|||++|+.||...
T Consensus       174 ----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  220 (297)
T cd06659         174 ----------RKSLVGTPYWMA--------------PEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD  220 (297)
T ss_pred             ----------ccceecCccccC--------------HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                      122457889999              55555555688999999999999999999999743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.89  E-value=3.7e-22  Score=166.47  Aligned_cols=146  Identities=26%  Similarity=0.354  Sum_probs=109.2

Q ss_pred             eeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------------
Q 039073           52 YCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------------   98 (257)
                      +.||.|++|.||++....++.|++|.+......  .....+..|+.+                                 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP--DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            368999999999997766899999988764332  223445555544                                 


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         +..+++.++.|||++   +++|+||+|+||+++.++.++|+|||++............   
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~---  152 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSD---  152 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceecc---
Confidence                               233789999999999   9999999999999999999999999998754321110000   


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                              ....++..|+|              ||...+..++.++|+||+|+++|+|++ |..||...
T Consensus       153 --------~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~  199 (251)
T cd05041         153 --------GLKQIPIKWTA--------------PEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGM  199 (251)
T ss_pred             --------ccCcceeccCC--------------hHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccC
Confidence                    01122456888              555555667889999999999999999 89999754

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.89  E-value=3e-22  Score=169.97  Aligned_cols=149  Identities=29%  Similarity=0.403  Sum_probs=112.7

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH------------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA------------------------------   96 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~------------------------------   96 (257)
                      |++.+.||+|+||.||+|... +++.||+|++........ ....+..|+                              
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEG-IPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccch-hhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            678899999999999999765 589999999974322111 011111111                              


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           97 ------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        97 ------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                    ..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+..
T Consensus        80 ~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          80 KLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCccee
Confidence                                          12445899999999999   999999999999999999999999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......              ....++..|++              ||...+..++.++|+||+||++|+|++|++||++
T Consensus       157 ~~~~~~~--------------~~~~~~~~~~~--------------PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~  208 (287)
T cd07838         157 YSFEMAL--------------TSVVVTLWYRA--------------PEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRG  208 (287)
T ss_pred             ccCCccc--------------ccccccccccC--------------hHHhccCCCCCcchhhhHHHHHHHHHhCCCcccC
Confidence            5332211              12346778899              5555555678899999999999999999999986


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      .+
T Consensus       209 ~~  210 (287)
T cd07838         209 TS  210 (287)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.89  E-value=1.2e-22  Score=173.79  Aligned_cols=153  Identities=27%  Similarity=0.401  Sum_probs=112.0

Q ss_pred             ccccccceeeeecCceeEEEEEeCC---------------CCEEEEEEcCccccccHHHHHHHHHHHHH-----------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD---------------GKVVALKKLHQSETEDSAFVKSFQNEAHV-----------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~---------------~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------   98 (257)
                      .++|++.+.||+|+||.||++....               ...||+|.+......  .....+..|+++           
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTK--TARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCH--HHHHHHHHHHHHHHhCCCCCcCe
Confidence            4579999999999999999985431               235899998754221  112333444333           


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCC
Q 039073           99 ----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSN  126 (257)
Q Consensus        99 ----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~  126 (257)
                                                                          +..+++.|++|||++   +++|+||||+
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~  158 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATR  158 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChh
Confidence                                                                344799999999999   9999999999


Q ss_pred             CeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccc
Q 039073          127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD  206 (257)
Q Consensus       127 nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~D  206 (257)
                      ||+++.++.++|+|||++..........           ......++..|+|              ||...+..++.++|
T Consensus       159 Nill~~~~~~kl~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~D  213 (295)
T cd05097         159 NCLVGNHYTIKIADFGMSRNLYSGDYYR-----------IQGRAVLPIRWMA--------------WESILLGKFTTASD  213 (295)
T ss_pred             hEEEcCCCcEEecccccccccccCccee-----------ccCcCcCceeecC--------------hhhhccCCcCchhh
Confidence            9999999999999999987553221100           0112234567999              55555566789999


Q ss_pred             hhhHHHHHHHHHh--CCCCCccc
Q 039073          207 VYSFGVVALKVLM--GTHPGELL  227 (257)
Q Consensus       207 iwSlG~~l~ell~--G~~Pf~~~  227 (257)
                      +||||+++|+|++  |..||...
T Consensus       214 vwSlG~~l~el~~~~~~~p~~~~  236 (295)
T cd05097         214 VWAFGVTLWEMFTLCKEQPYSLL  236 (295)
T ss_pred             HHHHHHHHHHHHHcCCCCCCccc
Confidence            9999999999987  67888754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.89  E-value=9.4e-23  Score=174.18  Aligned_cols=152  Identities=25%  Similarity=0.338  Sum_probs=114.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      .++|++.+.||+|++|.||+|... +++.+++|.++...... .....+.+|+.                          
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKE-GFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccc-cchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            467999999999999999999765 68899999987543221 11112222222                          


Q ss_pred             ---------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           98 ---------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        98 ---------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                 .++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        83 lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~  159 (293)
T cd07843          83 MVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGSP  159 (293)
T ss_pred             EEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccCC
Confidence                                       2455899999999999   9999999999999999999999999998765433


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...             .....++..|+|||.+              .+. .++.++|+||+|+++|+|++|.+||...
T Consensus       160 ~~~-------------~~~~~~~~~~~aPE~~--------------~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         160 LKP-------------YTQLVVTLWYRAPELL--------------LGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             ccc-------------cccccccccccCchhh--------------cCCccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            211             1123467789995544              332 2478999999999999999999999754

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.89  E-value=1.7e-22  Score=173.03  Aligned_cols=156  Identities=24%  Similarity=0.408  Sum_probs=114.2

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH------------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA------------------------   96 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~------------------------   96 (257)
                      ....++|++.+.||+|++|.||+|... +++.||||.++.......  ...+..|.                        
T Consensus        11 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~   88 (296)
T cd06618          11 PADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEE--NKRILMDLDVVLKSHDCPYIVKCYGYFITDSD   88 (296)
T ss_pred             cCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHH--HHHHHHHHHHHHhccCCCchHhhheeeecCCe
Confidence            445577899999999999999999765 488999999875422111  11111111                        


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           97 ----------------------------HVLSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        97 ----------------------------~~l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                  ..++.+++.|++|||+ .   +++|+||+|+||++++++.++|+|||++...
T Consensus        89 ~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---~i~H~dl~p~nill~~~~~~kL~dfg~~~~~  165 (296)
T cd06618          89 VFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKH---GVIHRDVKPSNILLDASGNVKLCDFGISGRL  165 (296)
T ss_pred             EEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC---CEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence                                        1245589999999996 5   8999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ......              ....++..|+|||.+.....          ...++.++|+||||+++|+|++|+.||..
T Consensus       166 ~~~~~~--------------~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         166 VDSKAK--------------TRSAGCAAYMAPERIDPPDP----------NPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             cCCCcc--------------cCCCCCccccCHhhcCCCCC----------ccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            322111              11246778999665432110          12367899999999999999999999975

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=3.9e-24  Score=174.31  Aligned_cols=188  Identities=22%  Similarity=0.358  Sum_probs=137.2

Q ss_pred             CCcCHHHH--HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH-------------
Q 039073           34 GKISYEDL--INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH-------------   97 (257)
Q Consensus        34 ~~~~~~~~--~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-------------   97 (257)
                      .+++..++  ....+.|.+.+.||+|.||++.+++++ +.+.+++|-+.......    ++|.+|..             
T Consensus        10 h~I~~~el~kv~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~----~dF~rEfhY~~~Ls~H~hIi~   85 (378)
T KOG1345|consen   10 HLIPMEELKKVDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQ----ADFVREFHYSFFLSPHQHIID   85 (378)
T ss_pred             cccccccccccchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhH----HHHHHHhccceeeccchhhhH
Confidence            33444443  344677999999999999999999665 57789999887654443    34444322             


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE-cCCC-Ce
Q 039073           98 ---------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILL-DSNL-EA  136 (257)
Q Consensus        98 ---------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill-~~~~-~~  136 (257)
                                                             .++.|++.|+.|||+.   +++|||||.+|||| +.++ .+
T Consensus        86 tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rv  162 (378)
T KOG1345|consen   86 TYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRV  162 (378)
T ss_pred             HHHHHhhcCceEEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEE
Confidence                                                   1455899999999999   99999999999998 4443 68


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      ||+|||..........                ..--+..|.+||++--..         ......++..|+|.||++++.
T Consensus       163 KlcDFG~t~k~g~tV~----------------~~~~~~~y~~pe~~~~~~---------ne~~~~~ps~D~WqfGIi~f~  217 (378)
T KOG1345|consen  163 KLCDFGLTRKVGTTVK----------------YLEYVNNYHAPELCDTVV---------NEKLVVNPSTDIWQFGIIFFY  217 (378)
T ss_pred             EeeecccccccCceeh----------------hhhhhcccCCcHHHhhcc---------ccceEecccccchheeeeeee
Confidence            9999998764432211                122245677777653221         112224788999999999999


Q ss_pred             HHhCCCCCcccccccCCCCCcchhhhhhcccCCCCCC
Q 039073          217 VLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVN  253 (257)
Q Consensus       217 ll~G~~Pf~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  253 (257)
                      +++|.+||+.....+...+.+..+.+...++++..+.
T Consensus       218 cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~  254 (378)
T KOG1345|consen  218 CLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFN  254 (378)
T ss_pred             eecCCCcchhhhccCchHHHHHHHhcccCccCchhhc
Confidence            9999999998888888888888888888887765443

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=1.9e-23  Score=166.69  Aligned_cols=146  Identities=20%  Similarity=0.370  Sum_probs=117.6

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ..++|++.+++|+|-+++||.| ...+...++||++++-+.      +.+.+|+.+|.                      
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk------kKIkREikIL~nL~gg~NIi~L~DiV~Dp~Skt  109 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK------KKIKREIKILQNLRGGPNIIKLLDIVKDPESKT  109 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH------HHHHHHHHHHHhccCCCCeeehhhhhcCccccC
Confidence            5788999999999999999999 456788899999987542      34555655532                      


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccccC
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVD  150 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~~~  150 (257)
                                                   .+++.||.|||++   ||+|||+||.|++||. ...++|+|+|++.+..+.
T Consensus       110 paLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  110 PSLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             chhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence                                         3899999999999   9999999999999994 467999999999988654


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ..-              +....+..|-.||++.+...             |+..-|+|||||.+..|...+-||.
T Consensus       187 ~eY--------------nVRVASRyfKGPELLVdy~~-------------YDYSLD~WS~GcmlA~miFrkepFF  234 (338)
T KOG0668|consen  187 KEY--------------NVRVASRYFKGPELLVDYQM-------------YDYSLDMWSLGCMLASMIFRKEPFF  234 (338)
T ss_pred             cee--------------eeeeehhhcCCchheeechh-------------ccccHHHHHHHHHHHHHHhccCccc
Confidence            432              23455666777666655543             5889999999999999999998986

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.89  E-value=1.8e-22  Score=171.81  Aligned_cols=150  Identities=22%  Similarity=0.374  Sum_probs=112.1

Q ss_pred             ccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      .|++.+.||+|+||.||++..     .++..||+|.++....  ......+.+|+.+                       
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG--GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc--HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            478899999999999999963     3578899999875422  1223344455443                       


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..+++.|+.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAI  159 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcccccc
Confidence                                           334899999999999   9999999999999999999999999998865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........          ......++..|+|              ||...+..++.++|+||||+++|++++++.|+.
T Consensus       160 ~~~~~~~~----------~~~~~~~~~~y~a--------------pE~~~~~~~~~~~Di~slG~il~ellt~~~~~~  213 (284)
T cd05079         160 ETDKEYYT----------VKDDLDSPVFWYA--------------PECLIQSKFYIASDVWSFGVTLYELLTYCDSES  213 (284)
T ss_pred             ccCcccee----------ecCCCCCCccccC--------------HHHhccCCCCccccchhhhhhhhhhhcCCCCCc
Confidence            43221100          0112345667889              555555567889999999999999999877653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.89  E-value=2.4e-22  Score=172.10  Aligned_cols=151  Identities=27%  Similarity=0.430  Sum_probs=115.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||++.. .+++.|++|.+.......   .+.+..|+.+                         
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~---~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv   94 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPK---KELIINEILVMRENKHPNIVNYLDSYLVGDELWVV   94 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchH---HHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEE
Confidence            47899999999999999999964 468889999986432211   1233333322                         


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.........
T Consensus        95 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~  171 (293)
T cd06647          95 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  171 (293)
T ss_pred             EecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccccc
Confidence                                     444899999999999   9999999999999999999999999987654322211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                   .....|+..|++              ||......++.++|+||||+++|++++|+.||...+
T Consensus       172 -------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~  219 (293)
T cd06647         172 -------------RSTMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN  219 (293)
T ss_pred             -------------cccccCChhhcC--------------chhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                         112357778999              555555556889999999999999999999997543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.6e-23  Score=187.50  Aligned_cols=147  Identities=27%  Similarity=0.436  Sum_probs=110.5

Q ss_pred             eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      -.||+|.||+||-|+.. +...+|||.+.....   +.++-+..|+.+                                
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekds---r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS---REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccc---hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCC
Confidence            46999999999999654 566789998864322   223334444332                                


Q ss_pred             ----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccccCCCCCC
Q 039073           99 ----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 ----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                            +.+||++||.|||+.   .|+|||||.+|++++. .|.+||+|||.++........  
T Consensus       658 SLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~--  732 (1226)
T KOG4279|consen  658 SLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPC--  732 (1226)
T ss_pred             cHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCcc--
Confidence                                  345999999999999   9999999999999974 478999999998876432221  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                                 .+...||.-|||||++-+..            ..|+..+|||||||+..||+||++||-.+++
T Consensus       733 -----------TETFTGTLQYMAPEvIDqG~------------RGYG~aADIWS~GCT~vEMATGrPPF~Elgs  783 (1226)
T KOG4279|consen  733 -----------TETFTGTLQYMAPEVIDQGP------------RGYGKAADIWSFGCTMVEMATGRPPFVELGS  783 (1226)
T ss_pred             -----------ccccccchhhhChHhhccCC------------cCCCchhhhhhccceeEeeccCCCCeeecCC
Confidence                       13367999999955443221            1378999999999999999999999986543

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.89  E-value=2.3e-22  Score=171.57  Aligned_cols=153  Identities=31%  Similarity=0.439  Sum_probs=112.4

Q ss_pred             ccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccc-cHHHHHHHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETE-DSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~-----------------------   98 (257)
                      +|++.+.||.|+||.||.+..    .+|..||+|++...... .....+.+..|+.+                       
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            488999999999999999965    36889999998653221 11112233334333                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence                                         333899999999998   999999999999999999999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .....            .....|+..|++||.+...            ...++.++|+||||+++|++++|..||..
T Consensus       158 ~~~~~------------~~~~~~~~~y~aPE~~~~~------------~~~~~~~~Dv~slG~~l~~ll~g~~p~~~  210 (290)
T cd05613         158 DEVER------------AYSFCGTIEYMAPDIVRGG------------DGGHDKAVDWWSMGVLMYELLTGASPFTV  210 (290)
T ss_pred             ccccc------------cccccCCcccCChhhccCC------------CCCCCccccHHHHHHHHHHHhcCCCCCCc
Confidence            21110            1124578889995554221            11246789999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.89  E-value=2.1e-22  Score=175.34  Aligned_cols=154  Identities=22%  Similarity=0.328  Sum_probs=112.9

Q ss_pred             ccccceeeeecCceeEEEEEeC-C--CCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-D--GKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      +|++.+.||+|+||.||++... +  +..||+|++....... ...+.+..|+.                          
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKK-ILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccc-hhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            5889999999999999999654 4  7789999886432111 11122222222                          


Q ss_pred             -----------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           98 -----------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        98 -----------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                   .+..|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus        80 ~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857          80 ELYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             cEEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence                                         2445899999999999   99999999999999999999999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .......         .......|+..|+|||+              ..+ ..++.++|+||+|+++|++++|++||...
T Consensus       157 ~~~~~~~---------~~~~~~~g~~~y~aPE~--------------~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~  213 (332)
T cd07857         157 ENPGENA---------GFMTEYVATRWYRAPEI--------------MLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK  213 (332)
T ss_pred             ccccccc---------ccccCcccCccccCcHH--------------HhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence            3221100         00123467889999554              333 23688999999999999999999999753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.89  E-value=1.9e-22  Score=172.36  Aligned_cols=151  Identities=30%  Similarity=0.454  Sum_probs=112.1

Q ss_pred             cccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .+|.+.+.||+|+||.||+|...      ++..+++|.+......   ..+.+.+|++.                     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLA---ARKDFQREAELLTNLQHEHIVKFYGVCGDGDP   81 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHH---HHHHHHHHHHHHhcCCCCCcceEEEEEccCCc
Confidence            56889999999999999999632      3556889988643221   11223333222                     


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           99 ----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        99 ----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                    ++.|++.|++|||++   +++|+||||+||+++.
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~  158 (291)
T cd05094          82 LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGA  158 (291)
T ss_pred             eEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEcc
Confidence                                                          445899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++..........           ......++..|+|              ||...+..++.++|+||||+
T Consensus       159 ~~~~~l~dfg~a~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~  213 (291)
T cd05094         159 NLLVKIGDFGMSRDVYSTDYYR-----------VGGHTMLPIRWMP--------------PESIMYRKFTTESDVWSFGV  213 (291)
T ss_pred             CCcEEECCCCcccccCCCceee-----------cCCCCCcceeecC--------------hHHhccCCCCchhhHHHHHH
Confidence            9999999999987543221100           0112345678999              55555566788999999999


Q ss_pred             HHHHHHh-CCCCCccc
Q 039073          213 VALKVLM-GTHPGELL  227 (257)
Q Consensus       213 ~l~ell~-G~~Pf~~~  227 (257)
                      ++|||++ |+.||...
T Consensus       214 il~el~t~g~~p~~~~  229 (291)
T cd05094         214 ILWEIFTYGKQPWFQL  229 (291)
T ss_pred             HHHHHHhCCCCCCCCC
Confidence            9999998 99999653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.89  E-value=2.2e-22  Score=174.90  Aligned_cols=156  Identities=21%  Similarity=0.326  Sum_probs=109.0

Q ss_pred             cceeeeec--CceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           50 IKYCIGTG--GYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        50 ~~~~lg~G--~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      +.+.||+|  +|++||++.. .+|+.||+|++...... ......++.|+.+                            
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhcc-HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            56789999  7889999955 57999999999754322 2223344444443                            


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.||.|||++   +++||||||+||+++.++.++++||+...........
T Consensus        81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~  157 (327)
T cd08227          81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQR  157 (327)
T ss_pred             cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhcccccccc
Confidence                                     334899999999999   9999999999999999999999999865433211110


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...      .........++..|+|||++...            ...++.++|+||+||++|||++|+.||...
T Consensus       158 ~~~------~~~~~~~~~~~~~y~aPE~~~~~------------~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         158 LRV------VHDFPKYSVKVLPWLSPEVLQQN------------LQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             ccc------cccccccccceecccChHHhhcc------------cCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            000      00001123456779995544221            123688999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=3.5e-22  Score=167.45  Aligned_cols=147  Identities=32%  Similarity=0.417  Sum_probs=109.0

Q ss_pred             eeeeecCceeEEEEEeC-C---CCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAELP-D---GKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~-~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      +.||+|+||.||+|... .   +..+|+|.+......  ...+.+..|+.+                             
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCC
Confidence            46999999999999532 2   368999998765432  223344455444                             


Q ss_pred             ---------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcc
Q 039073           99 ---------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        99 ---------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                                           ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+............ 
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~-  154 (257)
T cd05060          79 LGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRA-  154 (257)
T ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCccccc-
Confidence                                 334899999999999   9999999999999999999999999998765432211000 


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                               .....++..|+|              ||...+..++.++|+||||+++|++++ |+.||...
T Consensus       155 ---------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~  202 (257)
T cd05060         155 ---------TTAGRWPLKWYA--------------PECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM  202 (257)
T ss_pred             ---------ccCccccccccC--------------HHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC
Confidence                     011223457888              666666667899999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.89  E-value=3.2e-22  Score=167.13  Aligned_cols=150  Identities=28%  Similarity=0.404  Sum_probs=115.1

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccc--cHHHHHHHHHHHHH-------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETE--DSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~~~~e~~~-------------------------   98 (257)
                      +|+..+.||+|++|+||+|... ++..|++|.+......  ..+..+.+..|+..                         
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            4778899999999999999765 7899999988653311  12223445555544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+........
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~  157 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSF  157 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceecccccc
Confidence                                      333799999999999   999999999999999999999999998876533221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    .....|+..|++||              ...... ++.++|+||+|+++|++++|+.||...
T Consensus       158 --------------~~~~~~~~~y~~pe--------------~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~  205 (258)
T cd06632         158 --------------AKSFKGSPYWMAPE--------------VIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQL  205 (258)
T ss_pred             --------------ccccCCCcceeCHH--------------HhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccC
Confidence                          11235678899954              444333 688999999999999999999999654

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.88  E-value=1.9e-22  Score=171.44  Aligned_cols=152  Identities=28%  Similarity=0.467  Sum_probs=111.9

Q ss_pred             ccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..+|.+.+.||+|+||.||++..      .++..+++|.+.....   .....+..|+++                    
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE---SARQDFQREAELLTVLQHQHIVRFYGVCTEGR   80 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH---HHHHHHHHHHHHHhcCCCCCCceEEEEEecCC
Confidence            35688899999999999999953      2356789998764321   112233333322                    


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           99 ----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        99 ----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                    +..|++.|++|||++   +++|+||||+||+++.
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~  157 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQ  157 (280)
T ss_pred             ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcC
Confidence                                                          345899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++..........           ......++..|+|              ||...+..++.++|+|||||
T Consensus       158 ~~~~kL~dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~  212 (280)
T cd05092         158 GLVVKIGDFGMSRDIYSTDYYR-----------VGGRTMLPIRWMP--------------PESILYRKFTTESDIWSFGV  212 (280)
T ss_pred             CCCEEECCCCceeEcCCCceee-----------cCCCccccccccC--------------HHHhccCCcCchhhHHHHHH
Confidence            9999999999987543211100           0011234567888              66666666789999999999


Q ss_pred             HHHHHHh-CCCCCccc
Q 039073          213 VALKVLM-GTHPGELL  227 (257)
Q Consensus       213 ~l~ell~-G~~Pf~~~  227 (257)
                      ++|||++ |.+||...
T Consensus       213 il~el~~~g~~p~~~~  228 (280)
T cd05092         213 VLWEIFTYGKQPWYQL  228 (280)
T ss_pred             HHHHHHcCCCCCCccC
Confidence            9999998 99999653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.88  E-value=3.7e-22  Score=167.59  Aligned_cols=144  Identities=26%  Similarity=0.396  Sum_probs=112.0

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||.|++|.||++... +++.|++|++...........+.+..|+..                                  
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999664 588999999976544333334555566554                                  


Q ss_pred             -----------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccccc
Q 039073           99 -----------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT  161 (257)
Q Consensus        99 -----------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  161 (257)
                                       +..|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++........         
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~---------  148 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQK---------  148 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccc---------
Confidence                             233799999999998   999999999999999999999999999876543210         


Q ss_pred             CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       162 ~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                           .....++..|++              ||...+..++.++|+||+|+++|++++|..||....
T Consensus       149 -----~~~~~~~~~~~~--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         149 -----TWTFCGTPEYVA--------------PEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             -----cccccCCcCccC--------------hhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence                 012356778999              454445556889999999999999999999997653

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.88  E-value=1.5e-22  Score=176.17  Aligned_cols=154  Identities=25%  Similarity=0.358  Sum_probs=116.9

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ++...+++|++.+.||.|+||.||+|.. .+++.||+|++....... ...+.+..|+.+                    
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   82 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP-VLAKRTYRELKLLKHLRHENIISLSDIFISPL   82 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEeccccccc-chhHHHHHHHHHHHhcCCCCeeeEeeeEecCC
Confidence            4456788999999999999999999965 479999999886432111 112333344333                    


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|+++|+.|||+.   +++|+||+|.|++++.++.++|+|||.+....
T Consensus        83 ~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~  159 (328)
T cd07856          83 EDIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLARIQD  159 (328)
T ss_pred             CcEEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccccccC
Confidence                                          344899999999999   99999999999999999999999999887432


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...                ....++..|++              ||...+ ..++.++|+||+|+++|++++|+.||...
T Consensus       160 ~~~----------------~~~~~~~~y~a--------------PE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~  209 (328)
T cd07856         160 PQM----------------TGYVSTRYYRA--------------PEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK  209 (328)
T ss_pred             CCc----------------CCCcccccccC--------------ceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            111                11245677889              444333 34688999999999999999999999753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.88  E-value=4.4e-22  Score=168.25  Aligned_cols=157  Identities=22%  Similarity=0.358  Sum_probs=118.5

Q ss_pred             CHHHHHhhccccccceee--eecCceeEEEEEe-CCCCEEEEEEcCccccccHH-HHHHHH-------------------
Q 039073           37 SYEDLINATEEFHIKYCI--GTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSA-FVKSFQ-------------------   93 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~l--g~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~-~~~~~~-------------------   93 (257)
                      +..+.....++|++.+.+  |+|+||.||++.. .++..+|+|.+........+ ......                   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~   84 (267)
T PHA03390          5 SLSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGH   84 (267)
T ss_pred             HHHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCee
Confidence            345556667788888887  9999999999965 47888999998654222111 011100                   


Q ss_pred             ------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccc
Q 039073           94 ------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLH  148 (257)
Q Consensus        94 ------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~  148 (257)
                                              .++..+..|++.|+.|||+.   +++|+||+|+||+++.++ .++++|||++....
T Consensus        85 ~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~  161 (267)
T PHA03390         85 VLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIG  161 (267)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccceecC
Confidence                                    12223566999999999999   999999999999999988 99999999887543


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...                 ...++..|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       162 ~~~-----------------~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  209 (267)
T PHA03390        162 TPS-----------------CYDGTLDYFS--------------PEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKED  209 (267)
T ss_pred             CCc-----------------cCCCCCcccC--------------hhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            211                 1246788999              66666666788999999999999999999999744

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=2.6e-22  Score=168.39  Aligned_cols=142  Identities=29%  Similarity=0.399  Sum_probs=107.7

Q ss_pred             eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH----------------------------------
Q 039073           52 YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA----------------------------------   96 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~----------------------------------   96 (257)
                      +.||.|++|.||+|.. .+++.||+|++.............+..|.                                  
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5799999999999965 46889999998754322111112222221                                  


Q ss_pred             ------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           97 ------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        97 ------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                        ..+..|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++......        
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--------  150 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN--------  150 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceecccc--------
Confidence                              11445899999999999   9999999999999999999999999987653221        


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                               ....++..|++              ||...+..++.++|+||+|+++|++++|..||...
T Consensus       151 ---------~~~~~~~~y~~--------------pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  196 (260)
T cd05611         151 ---------KKFVGTPDYLA--------------PETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE  196 (260)
T ss_pred             ---------ccCCCCcCccC--------------hhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC
Confidence                     11346778889              55555555688999999999999999999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.88  E-value=2.5e-22  Score=172.03  Aligned_cols=156  Identities=28%  Similarity=0.388  Sum_probs=114.2

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHH--------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNE--------------------------   95 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e--------------------------   95 (257)
                      ...++|++.+.||+|+||.||+|... +|+.||+|+++....... ....+..|                          
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~   82 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEG-FPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL   82 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccC-chHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence            45678999999999999999999764 688999999864321110 00111111                          


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           96 -----------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        96 -----------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                         +..+..|++.|++|||+.   +++|+||+|.||++++++.++|+|
T Consensus        83 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~d  159 (302)
T cd07864          83 DFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLAD  159 (302)
T ss_pred             hccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCc
Confidence                                               122445899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||.+..........            .....++..|++||++...             ..++.++|+||+||++|+|++|
T Consensus       160 fg~~~~~~~~~~~~------------~~~~~~~~~y~~PE~~~~~-------------~~~~~~~Di~slG~~~~el~~g  214 (302)
T cd07864         160 FGLARLYNSEESRP------------YTNKVITLWYRPPELLLGE-------------ERYGPAIDVWSCGCILGELFTK  214 (302)
T ss_pred             ccccccccCCcccc------------cccceeccCccChHHhcCC-------------CCCCchhHHHHHHHHHHHHHhC
Confidence            99987654322110            0112346679996654321             2247789999999999999999


Q ss_pred             CCCCccc
Q 039073          221 THPGELL  227 (257)
Q Consensus       221 ~~Pf~~~  227 (257)
                      ++||...
T Consensus       215 ~~~~~~~  221 (302)
T cd07864         215 KPIFQAN  221 (302)
T ss_pred             CCCCCCC
Confidence            9999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.88  E-value=2.6e-22  Score=167.85  Aligned_cols=149  Identities=26%  Similarity=0.364  Sum_probs=114.3

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|+||.+|.+.. .+|+.|++|.+........ ....+..|+.+                           
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPK-EREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChH-HHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            588999999999999999955 4688999999865322211 12344444433                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+........
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence                                      234899999999998   999999999999999999999999999876532211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .             .....|+..|+|              ||...+..++.++|+||||++++++++|+.||..
T Consensus       157 ~-------------~~~~~~~~~~~~--------------pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08218         157 L-------------ARTCIGTPYYLS--------------PEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA  203 (256)
T ss_pred             h-------------hhhccCCccccC--------------HHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC
Confidence            0             012346778889              5555556678899999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=3.1e-22  Score=169.39  Aligned_cols=150  Identities=31%  Similarity=0.494  Sum_probs=113.8

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      .|+..+.||.|+||.||+|.+ .+++.|++|.+.......  ....+.+|+.+                           
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDD--DVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCch--hHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEE
Confidence            578889999999999999965 578999999886532111  12233333332                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.+++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+........
T Consensus        80 v~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06917          80 IMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS  156 (277)
T ss_pred             EEecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc
Confidence                                      344899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .....|+..|+|||.              ..+ ..++.++|+||||+++|+|++|+.||....
T Consensus       157 ~-------------~~~~~~~~~y~aPE~--------------~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~  206 (277)
T cd06917         157 K-------------RSTFVGTPYWMAPEV--------------ITEGKYYDTKADIWSLGITIYEMATGNPPYSDVD  206 (277)
T ss_pred             c-------------cccccCCcceeCHHH--------------hccCCccccchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            1             112357888999554              332 235789999999999999999999997643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=8.5e-22  Score=193.73  Aligned_cols=156  Identities=25%  Similarity=0.460  Sum_probs=113.9

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH---------------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ---------------------   93 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~---------------------   93 (257)
                      ++++++.   ..|...+.||+|+||.||+|.. .++..||||++..........++.+.                     
T Consensus       683 ~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~  759 (968)
T PLN00113        683 ITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAY  759 (968)
T ss_pred             hhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCE
Confidence            3444443   4577888999999999999976 57899999998654322221111111                     


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           94 --------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        94 --------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                          .+...++.|++.|++|||+.+..+++|||+||+||+++.++..++. ++........   
T Consensus       760 lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~---  835 (968)
T PLN00113        760 LIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD---  835 (968)
T ss_pred             EEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC---
Confidence                                1122356799999999997666799999999999999998887765 5544322110   


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                    ....++..|+|              ||...+..++.++|||||||++|||++|+.||+.
T Consensus       836 --------------~~~~~t~~y~a--------------PE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~  880 (968)
T PLN00113        836 --------------TKCFISSAYVA--------------PETRETKDITEKSDIYGFGLILIELLTGKSPADA  880 (968)
T ss_pred             --------------CCccccccccC--------------cccccCCCCCcccchhhHHHHHHHHHhCCCCCCc
Confidence                          11246789999              6666666789999999999999999999999964

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.88  E-value=2.6e-22  Score=179.17  Aligned_cols=99  Identities=26%  Similarity=0.408  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhh
Q 039073          101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALW  180 (257)
Q Consensus       101 ~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape  180 (257)
                      .|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++...........           .....++..|+|  
T Consensus       244 ~qi~~aL~~LH~~---~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~-----------~~~~~~~~~y~a--  307 (400)
T cd05105         244 YQVARGMEFLASK---NCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVS-----------KGSTFLPVKWMA--  307 (400)
T ss_pred             HHHHHHHHHHHhC---CeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccc-----------cCCcCCCcceEC--
Confidence            4689999999999   999999999999999999999999999876532211100           112345678999  


Q ss_pred             HhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          181 FYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       181 ~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                  ||...+..++.++|||||||++|||++ |..||...
T Consensus       308 ------------PE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         308 ------------PESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             ------------hhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence                        555555667889999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.88  E-value=4.6e-22  Score=168.61  Aligned_cols=153  Identities=27%  Similarity=0.408  Sum_probs=115.5

Q ss_pred             cccccceeeeecCceeEEEEEeC-----CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-----DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ++|++.+.||+|+||.||+|...     ++..+|+|.+......  ...+.+..|+.+                      
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            56888899999999999999642     4778999999765432  223455555544                      


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      ++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+..
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKV  158 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccccc
Confidence                                            334899999999999   999999999999999999999999999886


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ..........          .....++..|++              ||...+..++.++|+||||+++|||++|..||..
T Consensus       159 ~~~~~~~~~~----------~~~~~~~~~~~~--------------Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~  214 (284)
T cd05038         159 LPEDKDYYYV----------KEPGESPIFWYA--------------PECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS  214 (284)
T ss_pred             cccCCcceec----------cCCCCCcccccC--------------cHHHccCCCCcccchHHHhhhhheeeccCCCccc
Confidence            6422211000          011223456778              5555555678899999999999999999999875


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       215 ~  215 (284)
T cd05038         215 P  215 (284)
T ss_pred             c
Confidence            3

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.88  E-value=7.1e-22  Score=167.54  Aligned_cols=150  Identities=32%  Similarity=0.473  Sum_probs=115.3

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      +-|++.+.||.|+||.||+|.. .++..||+|........  .....+.+|+.+                          
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   81 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   81 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccch--HHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEE
Confidence            3478889999999999999965 46889999987643321  223445555544                          


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..+++.++.+||+.   +++|+||+|.||+++.++.++++|||++......... 
T Consensus        82 e~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~-  157 (277)
T cd06641          82 EYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-  157 (277)
T ss_pred             EeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchhh-
Confidence                                    334899999999998   9999999999999999999999999988755322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....++..|++              ||...+..++.++|+||+||++|++++|..||...
T Consensus       158 ------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  204 (277)
T cd06641         158 ------------RNTFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL  204 (277)
T ss_pred             ------------hccccCCccccC--------------hhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence                        012346778888              55555555688999999999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.88  E-value=2.5e-23  Score=171.61  Aligned_cols=154  Identities=26%  Similarity=0.321  Sum_probs=117.0

Q ss_pred             hccccccc-eeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHH----------------------------
Q 039073           44 ATEEFHIK-YCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQ----------------------------   93 (257)
Q Consensus        44 ~~~~~~~~-~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~----------------------------   93 (257)
                      .+++|.+. +.||-|-.|+|..+ +..+++.+|+|++......+.+..-.++                            
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeee
Confidence            46777776 57899999999999 5568999999999755433322211111                            


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeeccCccccc
Q 039073           94 ----------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADFGTARLLH  148 (257)
Q Consensus        94 ----------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~dfg~~~~~~  148 (257)
                                            +|+..+.+||+.|+.|||++   +|.||||||+|+|...   +..+||+|||+++...
T Consensus       139 E~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             ecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEecccccccccC
Confidence                                  23334566899999999999   9999999999999964   4568999999998765


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .+...              ...+-|+.|.|              ||++....|+..+|+||+|+++|-|++|.+||....
T Consensus       216 ~~~~L--------------~TPc~TPyYva--------------Pevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~h  267 (400)
T KOG0604|consen  216 EPGDL--------------MTPCFTPYYVA--------------PEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  267 (400)
T ss_pred             CCccc--------------cCCcccccccC--------------HHHhCchhcCCCCCccchhHHHHHhhcCCCcccccC
Confidence            32221              22456889999              566666668999999999999999999999998543

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.88  E-value=3.3e-22  Score=167.34  Aligned_cols=147  Identities=28%  Similarity=0.449  Sum_probs=110.2

Q ss_pred             eeeeecCceeEEEEEeC--CCC--EEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAELP--DGK--VVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~--~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      +.||+|++|.||+|.+.  .++  .||+|.+......  ...+.+..|+..                             
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecC
Confidence            36899999999999653  233  6899999765442  234445555443                             


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             ++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++...........
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  155 (257)
T cd05040          79 LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV  155 (257)
T ss_pred             CCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccccccee
Confidence                                   334899999999999   999999999999999999999999999887643221100


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                ......++..|++              ||...+..++.++|+|||||++|+|++ |+.||...
T Consensus       156 ----------~~~~~~~~~~y~~--------------pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         156 ----------MEEHLKVPFAWCA--------------PESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             ----------cccCCCCCceecC--------------HHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence                      0012345677888              566666667889999999999999998 99999643

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.88  E-value=2.4e-22  Score=170.44  Aligned_cols=144  Identities=26%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             eeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||+|+||.||++.. .+|+.||+|.+.............+..|+.+                                  
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999965 4688999999865332222222233334333                                  


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                         +..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.........      
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~------  151 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKI------  151 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcc------
Confidence                               334899999999999   9999999999999999999999999988754321110      


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                              ....++..|++              ||...+..++.++|+||+|+++|+|++|+.||....
T Consensus       152 --------~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  198 (277)
T cd05577         152 --------KGRAGTPGYMA--------------PEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRK  198 (277)
T ss_pred             --------ccccCCCCcCC--------------HHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCc
Confidence                    12345678888              555555557889999999999999999999997643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.88  E-value=3.2e-22  Score=170.50  Aligned_cols=154  Identities=27%  Similarity=0.430  Sum_probs=113.7

Q ss_pred             hccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------   97 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------   97 (257)
                      ..++|++.+.||+|+||.||+|...      ++..||+|.+.....  ....+.+..|+.                    
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC--HHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            3568999999999999999999653      467899999875321  111222333322                    


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCC
Q 039073           98 -----------------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDIS  124 (257)
Q Consensus        98 -----------------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLk  124 (257)
                                                                           .++.|++.||.|||+.   +++|+||+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~  157 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLA  157 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---Ceeccccc
Confidence                                                                 2455899999999999   99999999


Q ss_pred             CCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc
Q 039073          125 SNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK  204 (257)
Q Consensus       125 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~  204 (257)
                      |.||+++.++.++++|||++...........           .....++..|+|              ||...+..++.+
T Consensus       158 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~  212 (288)
T cd05050         158 TRNCLVGENMVVKIADFGLSRNIYSADYYKA-----------SENDAIPIRWMP--------------PESIFYNRYTTE  212 (288)
T ss_pred             HhheEecCCCceEECccccceecccCccccc-----------cCCCccChhhcC--------------HHHHhcCCCCch
Confidence            9999999999999999999875432211000           011223456888              666666667899


Q ss_pred             cchhhHHHHHHHHHh-CCCCCccc
Q 039073          205 CDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       205 ~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +|+|||||++|+|++ |..||.+.
T Consensus       213 ~Dv~slG~il~el~~~~~~p~~~~  236 (288)
T cd05050         213 SDVWAYGVVLWEIFSYGMQPYYGM  236 (288)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999997 88898654

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.88  E-value=1.8e-22  Score=169.60  Aligned_cols=148  Identities=28%  Similarity=0.425  Sum_probs=115.4

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|+..+.||.|++|.||++... +++.+++|.+......  ...+.+.+|+..                          
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINE--AIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM   78 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccCh--HHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence            46888999999999999999665 6889999998764322  223344444433                          


Q ss_pred             --------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                +..|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          79 EYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             EecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence                                      33479999999999 7   99999999999999999999999999876543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .               ....++..|++              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       156 ~---------------~~~~~~~~y~~--------------PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         156 A---------------KTFVGTSSYMA--------------PERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             h---------------hcccCChhccC--------------HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            1               01346778999              55555556789999999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.88  E-value=3.4e-22  Score=169.72  Aligned_cols=151  Identities=25%  Similarity=0.353  Sum_probs=114.6

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||+|.. .+|+.|++|++....... .....+..|+.+                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG-GIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccc-hhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            588999999999999999965 468899999987643222 112334444433                           


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+..........
T Consensus        80 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (286)
T cd07832          80 YMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRL  156 (286)
T ss_pred             ccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCc
Confidence                                    344899999999999   99999999999999999999999999987654322100


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....++..|+|||.              ..+. .++.++|+||+|+++|+|++|.+||.+.
T Consensus       157 ------------~~~~~~~~~y~aPE~--------------~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~  204 (286)
T cd07832         157 ------------YSHQVATRWYRAPEL--------------LYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE  204 (286)
T ss_pred             ------------cccccCcccccCcee--------------eeccccCCchhHHHHHHHHHHHHHcCCcCcCCC
Confidence                        112457888999554              3322 2478999999999999999999888653

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.88  E-value=5.8e-22  Score=167.09  Aligned_cols=155  Identities=25%  Similarity=0.404  Sum_probs=113.0

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      +..++++.....||+|+||.||+|.. .++..|++|.+......   ..+.+.+|+.+                      
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSR---YVQPLHEEIALHSYLKHRNIVQYLGSDSENGFF   80 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHH---HHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEE
Confidence            44566677778999999999999965 46788999988653221   12334444333                      


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCcc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTAR  145 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~  145 (257)
                                                      +..|++.|++|||+.   +++|+||+|+||+++. ++.++|+|||.+.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~  157 (268)
T cd06624          81 KIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSK  157 (268)
T ss_pred             EEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhhe
Confidence                                            334899999999999   9999999999999986 6789999999886


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........             .....|+..|+|||.+....            ..++.++|+||+|+++|++++|+.||.
T Consensus       158 ~~~~~~~~-------------~~~~~~~~~~~aPE~~~~~~------------~~~~~~~Dv~slGvvl~~l~~g~~p~~  212 (268)
T cd06624         158 RLAGINPC-------------TETFTGTLQYMAPEVIDKGP------------RGYGAPADIWSLGCTIVEMATGKPPFI  212 (268)
T ss_pred             ecccCCCc-------------cccCCCCccccChhhhcccc------------ccCCchhhhHHHHHHHHHHHhCCCCCc
Confidence            54321110             01234678899955442211            125789999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       213 ~~  214 (268)
T cd06624         213 EL  214 (268)
T ss_pred             cc
Confidence            54

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.88  E-value=4.1e-22  Score=169.23  Aligned_cols=150  Identities=25%  Similarity=0.360  Sum_probs=111.1

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |++.+.||.|++|.||+|.. .+|..||+|++....... .....+..|+..                            
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE-GVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc-cchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEec
Confidence            67889999999999999965 479999999886542211 111223333332                            


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              ++.|++.||+|||++   +++|+||+|+||+++.++.++|+|||++......... 
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~-  155 (283)
T cd07835          80 LDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRT-  155 (283)
T ss_pred             cCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccc-
Confidence                                    344899999999998   9999999999999999999999999998754322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                  .....++..|+||              |...+. .++.++|+||+|+++|+|++|+.||...+
T Consensus       156 ------------~~~~~~~~~~~aP--------------E~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  204 (283)
T cd07835         156 ------------YTHEVVTLWYRAP--------------EILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDS  204 (283)
T ss_pred             ------------cCccccccCCCCC--------------ceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                        0112357789994              443332 35789999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.88  E-value=7.5e-22  Score=166.57  Aligned_cols=153  Identities=31%  Similarity=0.449  Sum_probs=113.5

Q ss_pred             ccccccceeeeecCceeEEEEEeCC----CCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD----GKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++|.+.+.||+|+||.||+|...+    ...|+||.......  ....+.+..|+.+                      
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   82 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS--PSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVW   82 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC--HHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcE
Confidence            4568899999999999999995432    34689998865432  2223445555544                      


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.+++.|+.|||+.   +++|+||+|+||+++.++.++++|||++.....
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          83 IVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             EEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeeccc
Confidence                                         334899999999998   999999999999999999999999999875533


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      .....            .....++..|+|              ||......++.++|+||||+++||+++ |+.||....
T Consensus       160 ~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~  213 (270)
T cd05056         160 ESYYK------------ASKGKLPIKWMA--------------PESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK  213 (270)
T ss_pred             cccee------------cCCCCccccccC--------------hhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            21100            011223456888              565555567889999999999999986 999997653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.88  E-value=8.4e-22  Score=170.30  Aligned_cols=149  Identities=28%  Similarity=0.374  Sum_probs=113.5

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |...+.||+|+||.||+|.. .+++.|++|++.............+..|+.+                            
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            77778899999999999965 4688999999875443333333444555444                            


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             +..|++.++.|||++   +++|+||+|+||+++.++.++|+|||++......     
T Consensus       103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~-----  174 (313)
T cd06633         103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA-----  174 (313)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCCC-----
Confidence                                   234799999999999   9999999999999999999999999987532110     


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  ....|+..|+|||++...           ....++.++|+||||+++|+|++|..||...
T Consensus       175 ------------~~~~~~~~y~aPE~~~~~-----------~~~~~~~~sDv~slGvil~el~~g~~p~~~~  223 (313)
T cd06633         175 ------------NSFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  223 (313)
T ss_pred             ------------CCccccccccChhhcccc-----------CCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                        123577889996554211           1233678999999999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.88  E-value=6e-22  Score=167.87  Aligned_cols=147  Identities=24%  Similarity=0.264  Sum_probs=109.8

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH------------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA------------------------------   96 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~------------------------------   96 (257)
                      |++.+.||+|+||.||+|.. .+++.||+|+++........ . ....|+                              
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~-~-~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQ-V-NNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchh-h-hHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            67889999999999999965 46889999998754222111 1 111121                              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           97 ------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        97 ------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                              ..++.|++.|+.|||+.   +++|+||+|+||+++. +.++|+|||++........
T Consensus        79 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~  154 (282)
T cd07831          79 FELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP  154 (282)
T ss_pred             EecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCCC
Confidence                                    12445899999999999   9999999999999999 9999999999876532211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .              ....++..|+|||++..             +..++.++|+||+||++|||++|+.||.+.
T Consensus       155 ~--------------~~~~~~~~y~aPE~~~~-------------~~~~~~~~Di~slGv~l~el~~~~~p~~~~  202 (282)
T cd07831         155 Y--------------TEYISTRWYRAPECLLT-------------DGYYGPKMDIWAVGCVFFEILSLFPLFPGT  202 (282)
T ss_pred             c--------------CCCCCCcccCChhHhhc-------------CCCCCcchhHHHHHHHHHHHHcCCcCCCCC
Confidence            1              11346778999654322             223578999999999999999999999754

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.88  E-value=7.1e-22  Score=164.98  Aligned_cols=149  Identities=26%  Similarity=0.388  Sum_probs=114.4

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||++.. .+++.+|+|.+........ ....+..|+..                           
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKD-ERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccH-HHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            588999999999999999955 4788999999875433222 23444455443                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~~  151 (257)
                                                +..+++.++.|||++   +++|+||+|+||+++.++ .++++|||.+.......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc
Confidence                                      233799999999999   999999999999998654 57999999987654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..              ....++..|+|              ||...+..++.++|+||+|+++|+|++|+.||+..
T Consensus       157 ~~--------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  204 (256)
T cd08220         157 KA--------------YTVVGTPCYIS--------------PELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA  204 (256)
T ss_pred             cc--------------cccccCCcccC--------------chhccCCCCCcccchHHHHHHHHHHHhCCCCcccC
Confidence            11              12356778999              55555556788999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.88  E-value=8.1e-22  Score=165.44  Aligned_cols=147  Identities=31%  Similarity=0.424  Sum_probs=104.6

Q ss_pred             eeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      +.||+|+||.||+|...    +...||+|.+....  .....+.+..|+.+                             
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   78 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT--DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPY   78 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC--CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEec
Confidence            35899999999999642    24579999885422  11123334444332                             


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              ++.+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++..........
T Consensus        79 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~  155 (262)
T cd05058          79 MKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYS  155 (262)
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCccee
Confidence                                    344899999999998   99999999999999999999999999987543221100


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .         .......++..|+|              ||...+..++.++|+||||+++|||++ |.+||..
T Consensus       156 ~---------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~  205 (262)
T cd05058         156 V---------HNHTGAKLPVKWMA--------------LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  205 (262)
T ss_pred             e---------cccccCcCCccccC--------------hhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            0         00111234567889              555555567889999999999999999 5677764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.88  E-value=8.4e-22  Score=168.00  Aligned_cols=148  Identities=30%  Similarity=0.391  Sum_probs=115.5

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|+..+.||.|++|.||++.. .+++.+|+|.+......  .....+.+|+++                          
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP--DLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCch--HHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            4788999999999999999966 46889999988753221  122333444333                          


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.|++.|+.|||+.   +++|+||+|.||+++.++.++|+|||++...
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  155 (287)
T cd06621          79 AMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGEL  155 (287)
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccccccc
Confidence                                           344799999999999   9999999999999999999999999997654


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....               ....++..|++              ||...+..++.++|+||+|+++|+|++|+.||+..
T Consensus       156 ~~~~~---------------~~~~~~~~y~~--------------pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         156 VNSLA---------------GTFTGTSFYMA--------------PERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             ccccc---------------ccccCCccccC--------------HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            32111               11345678888              66666666788999999999999999999999865

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.88  E-value=1.4e-21  Score=163.17  Aligned_cols=146  Identities=32%  Similarity=0.477  Sum_probs=110.4

Q ss_pred             eeeeecCceeEEEEEeCC----CCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAELPD----GKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      +.||+|+||.||+|....    +..|++|.+.......  ..+.+..|+..                             
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE--ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh--HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            468999999999996643    7789999997654322  12333333322                             


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.+||+.   +++|+||+|.||+++.++.++|+|||.+...
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~  155 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDV  155 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccccccccc
Confidence                                           344799999999998   9999999999999999999999999998876


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .......           ......++..|+|              ||......++.++|+||+|+++|+|++ |..||..
T Consensus       156 ~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  210 (262)
T cd00192         156 YDDDYYR-----------KKTGGKLPIRWMA--------------PESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPG  210 (262)
T ss_pred             ccccccc-----------cccCCCcCccccC--------------HHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCC
Confidence            5432100           0122346778999              555555567889999999999999999 6999986


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       211 ~  211 (262)
T cd00192         211 L  211 (262)
T ss_pred             C
Confidence            5

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.88  E-value=5.4e-22  Score=171.04  Aligned_cols=153  Identities=25%  Similarity=0.375  Sum_probs=115.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      +...|+..+.||+|+||.||+|... ++..+++|.+.............+..|+++                        
T Consensus        13 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   92 (308)
T cd06634          13 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (308)
T ss_pred             cHHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEE
Confidence            3455888899999999999999654 688899998865433322223344445443                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..+++.|+.|||+.   +++|+||+|.||+++.++.++++|||++...... 
T Consensus        93 v~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-  168 (308)
T cd06634          93 VMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-  168 (308)
T ss_pred             EEEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecCc-
Confidence                                       234799999999999   9999999999999999999999999988654321 


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                      ....++..|+|||++.+.           ....++.++|+|||||++|++++|+.||...
T Consensus       169 ----------------~~~~~~~~y~aPE~~~~~-----------~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         169 ----------------NXFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             ----------------ccccCCccccCHHHHhhc-----------ccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence                            113467789996654321           1223577999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.88  E-value=9e-22  Score=166.37  Aligned_cols=166  Identities=27%  Similarity=0.434  Sum_probs=118.5

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|.+.+.||.|++|.||+|... +++.|++|++.............+..|..+                          
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            47999999999999999999654 799999999876433222222333333322                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.+||++   +++|+||+|+||+++.++.++++|||.+........
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~  157 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSS  157 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCCccc
Confidence                                      334899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccc-------cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          153 NRPYEW-------ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       153 ~~~~~~-------~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ......       .............++..|++              ||.......+.++|+||+|++++++++|+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  223 (280)
T cd05581         158 PESNKGDATNIDSQIEKNRRRFASFVGTAEYVS--------------PELLNEKPAGKSSDLWALGCIIYQMLTGKPPFR  223 (280)
T ss_pred             cccCCCCCccccccccccccccccccCCccccC--------------HHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence            100000       00000011123456778888              555555556889999999999999999999998


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      ..+
T Consensus       224 ~~~  226 (280)
T cd05581         224 GSN  226 (280)
T ss_pred             Ccc
Confidence            653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.88  E-value=9.7e-22  Score=167.59  Aligned_cols=147  Identities=27%  Similarity=0.401  Sum_probs=111.8

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      .|...+.||+|++|.||++.. .+++.+++|++.......   .+.+.+|+.+                           
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQR---RELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            455668999999999999965 478899999885432111   2223333322                           


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             +..|++.|+++||++   +++|+||+|+||+++.++.++++|||.+.........  
T Consensus        97 ~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~--  171 (285)
T cd06648          97 FLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR--  171 (285)
T ss_pred             ccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCcc--
Confidence                                   445899999999999   9999999999999999999999999987654321110  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                 .....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||..
T Consensus       172 -----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~  217 (285)
T cd06648         172 -----------RKSLVGTPYWMA--------------PEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFN  217 (285)
T ss_pred             -----------cccccCCccccC--------------HHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcC
Confidence                       112357888999              5555555678899999999999999999999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.87  E-value=6.9e-22  Score=172.89  Aligned_cols=154  Identities=21%  Similarity=0.314  Sum_probs=112.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      ..+|.+.+.||.|+||.||+|.. .+|+.||+|++.......   .+.+..                             
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~---~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQS---VKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCch---HHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence            47899999999999999999965 578999999885432211   111111                             


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEe
Q 039073           95 ----------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVA  139 (257)
Q Consensus        95 ----------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~  139 (257)
                                                        ++..++.|++.|+.|||++   +++|+||||+||+++. ++.++++
T Consensus        81 ~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~  157 (342)
T cd07854          81 DVGSLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIG  157 (342)
T ss_pred             ccccccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEEC
Confidence                                              1223456899999999999   9999999999999985 4568999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||.+...........          ......++..|+|||.+...             ..++.++|+|||||++|+|++
T Consensus       158 dfg~~~~~~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwSlGvil~el~~  214 (342)
T cd07854         158 DFGLARIVDPHYSHKG----------YLSEGLVTKWYRSPRLLLSP-------------NNYTKAIDMWAAGCIFAEMLT  214 (342)
T ss_pred             CcccceecCCcccccc----------ccccccccccccCHHHHhCc-------------cccCchhhHHHHHHHHHHHHh
Confidence            9999876532211100          00113467789996654321             235789999999999999999


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      |+.||...
T Consensus       215 g~~pf~~~  222 (342)
T cd07854         215 GKPLFAGA  222 (342)
T ss_pred             CCCCCCCC
Confidence            99999754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.6e-21  Score=162.48  Aligned_cols=150  Identities=29%  Similarity=0.449  Sum_probs=117.5

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||++... +++.|++|.+...... ......+..|++.                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            5889999999999999999654 6889999999876432 1234455555544                           


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..|++.++.+||+.   +++|+||+|+||+++.++.++|+|||.+......... 
T Consensus        80 ~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-  155 (254)
T cd06627          80 YAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD-  155 (254)
T ss_pred             cCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCccc-
Confidence                                    334899999999999   9999999999999999999999999998866432211 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  .....++..|++|              |...+...+.++|+||+|+++|++++|+.||...
T Consensus       156 ------------~~~~~~~~~y~~p--------------e~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~  202 (254)
T cd06627         156 ------------DASVVGTPYWMAP--------------EVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL  202 (254)
T ss_pred             ------------ccccccchhhcCH--------------hhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCc
Confidence                        1123567789994              4444444688999999999999999999999754

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.87  E-value=7.2e-22  Score=171.58  Aligned_cols=154  Identities=27%  Similarity=0.370  Sum_probs=115.0

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH-----------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA-----------------------------   96 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~-----------------------------   96 (257)
                      +|++.+.||.|++|.||+|... +++.|++|++...... ....+.+..|+                             
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDD-LIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccccc-chhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            5889999999999999999764 5889999988753211 11111222221                             


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           97 --------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        97 --------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                ..++.+++.|+.+||++   +++|+||||.||+++.++.++|+|||.+......
T Consensus        80 ~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          80 YIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             EEEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence                                      22455899999999999   9999999999999999999999999998876543


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....          .......++..|+|              ||...+. .++.++|+||+|+++|+|++|++||.+..
T Consensus       157 ~~~~----------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~  211 (330)
T cd07834         157 EDEK----------GFLTEYVVTRWYRA--------------PELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD  211 (330)
T ss_pred             cccc----------ccccccccccCcCC--------------ceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC
Confidence            2110          00122356778999              5555444 56889999999999999999999997543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.87  E-value=1.1e-21  Score=175.09  Aligned_cols=99  Identities=27%  Similarity=0.413  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhh
Q 039073          101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALW  180 (257)
Q Consensus       101 ~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape  180 (257)
                      .|++.|+.|||+.   +++||||||+||+++.++.++|+|||++...........           .....++..|+|  
T Consensus       246 ~qi~~aL~~LH~~---~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~-----------~~~~~~~~~y~a--  309 (401)
T cd05107         246 YQVANGMEFLASK---NCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYIS-----------KGSTFLPLKWMA--  309 (401)
T ss_pred             HHHHHHHHHHhcC---CcCcccCCcceEEEeCCCEEEEEecCcceeccccccccc-----------CCCcCCCCceeC--
Confidence            3788999999998   999999999999999999999999999875432211100           112345678999  


Q ss_pred             HhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          181 FYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       181 ~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                  ||.+.+..++.++|+||||+++|||++ |..||...
T Consensus       310 ------------PE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~  345 (401)
T cd05107         310 ------------PESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPEL  345 (401)
T ss_pred             ------------hHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCC
Confidence                        555555667889999999999999998 89999753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.87  E-value=4.9e-22  Score=173.33  Aligned_cols=159  Identities=28%  Similarity=0.377  Sum_probs=114.9

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH--------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA--------------------------   96 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~--------------------------   96 (257)
                      ..++|++.+.||+|+||.||+|... +++.+|+|++......... ...+..|+                          
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~-~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~   83 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATD-AQRTFREIMFLQELGDHPNIVKLLNVIKAENDKD   83 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchh-hhhhhHHHHHHHHhcCCCCccceeeeeccCCCce
Confidence            4678999999999999999999654 6889999988542111110 11111111                          


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           97 --------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        97 --------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                ..+..|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~  160 (337)
T cd07852          84 IYLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSEL  160 (337)
T ss_pred             EEEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhccccc
Confidence                                      12455899999999999   9999999999999999999999999998866433


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....        .+......|+..|+|||++..             ...++.++|+||||+++|+|++|+.||.+.
T Consensus       161 ~~~~~--------~~~~~~~~~~~~y~aPE~~~~-------------~~~~~~~sDi~slG~~l~el~tg~~pf~~~  216 (337)
T cd07852         161 EENPE--------NPVLTDYVATRWYRAPEILLG-------------STRYTKGVDMWSVGCILGEMLLGKPLFPGT  216 (337)
T ss_pred             ccccc--------CcchhcccccccccCceeeec-------------cccccccchHHHHHHHHHHHHhCCCCCCCC
Confidence            21100        001122357888999544321             223578999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.87  E-value=8.3e-22  Score=167.77  Aligned_cols=151  Identities=32%  Similarity=0.449  Sum_probs=117.2

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...+.|+..+.||+|++|.||+|... ++..+++|++.....    ..+.+..|++.                       
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   91 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW   91 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE
Confidence            46778999999999999999999665 688999999975432    12233333332                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.+++.|+.+||..   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  168 (286)
T cd06614          92 VVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK  168 (286)
T ss_pred             EEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhcc
Confidence                                         445899999999998   999999999999999999999999998765432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             .....++..|++              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       169 ~~~~-------------~~~~~~~~~y~~--------------PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~  219 (286)
T cd06614         169 EKSK-------------RNSVVGTPYWMA--------------PEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE  219 (286)
T ss_pred             chhh-------------hccccCCcccCC--------------HhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            2111             012346778888              55555556788999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.87  E-value=1.8e-21  Score=161.40  Aligned_cols=147  Identities=33%  Similarity=0.511  Sum_probs=116.0

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|+..+.||+|++|.||++... ++..+++|++.....   ...+.+.+|++.                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e   77 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVME   77 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEe
Confidence            5888999999999999999764 688999999976543   123344444443                           


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..+++.++.+||+.   +++|+||+|+||+++.++.++|+|||.+.........
T Consensus        78 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  154 (253)
T cd05122          78 FCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR  154 (253)
T ss_pred             cCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccccc
Confidence                                     344899999999998   9999999999999999999999999988765432210


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....++..|++              ||...+...+.++|+||+|+++|++++|+.||...
T Consensus       155 --------------~~~~~~~~~~~--------------PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         155 --------------NTMVGTPYWMA--------------PEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             --------------cceecCCcccC--------------HHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                          12346778888              55555555688999999999999999999999865

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.87  E-value=1.2e-21  Score=171.49  Aligned_cols=152  Identities=25%  Similarity=0.361  Sum_probs=114.2

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHH-------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEA-------------------------   96 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~-------------------------   96 (257)
                      ...++|++.+.||+|++|.||+|... +++.||+|++........ ....+.+|+                         
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAI-HAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE   90 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhh-HHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc
Confidence            45788999999999999999999664 688999999865321111 111122221                         


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           97 ------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        97 ------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                    ..++.|++.|++|||+.   +++|+||+|+||+++.++.++|+|||++..
T Consensus        91 ~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~~  167 (343)
T cd07851          91 DFQDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLARH  167 (343)
T ss_pred             ccccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccccccc
Confidence                                          12445899999999999   999999999999999999999999999875


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .....                ....++..|+|||.+...             ..++.++|+||+|+++|++++|+.||.+
T Consensus       168 ~~~~~----------------~~~~~~~~y~aPE~~~~~-------------~~~~~~~DvwslGv~l~elltg~~pf~~  218 (343)
T cd07851         168 TDDEM----------------TGYVATRWYRAPEIMLNW-------------MHYNQTVDIWSVGCIMAELLTGKTLFPG  218 (343)
T ss_pred             ccccc----------------cCCcccccccCHHHHhCC-------------CCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            43221                112457789995554321             1357899999999999999999999974


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       219 ~  219 (343)
T cd07851         219 S  219 (343)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.87  E-value=2.2e-21  Score=164.03  Aligned_cols=151  Identities=25%  Similarity=0.359  Sum_probs=112.6

Q ss_pred             cccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ++|+..+.||.|+||.||+|...      +.+.|++|.+......  .....+..|+++                     
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   82 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDE--NLQSEFRRELDMFRKLSHKNVVRLLGLCREAEP   82 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccch--HHHHHHHHHHHHHHhcCCcceeeeEEEECCCCc
Confidence            67899999999999999999643      3467899988653321  123344444443                     


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEe
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVA  139 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~  139 (257)
                                                             +..|++.||.|||+.   +++|+||||+||+++.++.++++
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~  159 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVS  159 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEc
Confidence                                                   234899999999999   99999999999999999999999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||++.........            ......++..|++              ||...+..++.++|+||||+++|++++
T Consensus       160 ~~~~~~~~~~~~~~------------~~~~~~~~~~y~~--------------PE~~~~~~~~~~~Di~slG~~l~~l~~  213 (275)
T cd05046         160 LLSLSKDVYNSEYY------------KLRNALIPLRWLA--------------PEAVQEDDFSTKSDVWSFGVLMWEVFT  213 (275)
T ss_pred             ccccccccCccccc------------ccCCceeEEeecC--------------hhhhccCCCCchhhHHHHHHHHHHHHh
Confidence            99987643221110            0122345677999              555555556789999999999999998


Q ss_pred             -CCCCCccc
Q 039073          220 -GTHPGELL  227 (257)
Q Consensus       220 -G~~Pf~~~  227 (257)
                       |..||...
T Consensus       214 ~~~~p~~~~  222 (275)
T cd05046         214 QGELPFYGL  222 (275)
T ss_pred             CCCCCcccc
Confidence             88999653

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.87  E-value=7.2e-22  Score=166.80  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++..........           ......++..|+|
T Consensus       104 ~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a  169 (268)
T cd05086         104 MACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIE-----------TEDDKCVPLRWLA  169 (268)
T ss_pred             HHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhh-----------cccCCcCcccccC
Confidence            345899999999999   99999999999999999999999999875432111000           0112356788999


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ||++......       .....++.++|+||||+++|||++ |..||...
T Consensus       170 PE~~~~~~~~-------~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  212 (268)
T cd05086         170 PELVGEFHGG-------LITAEQTKPSNVWALGVTLWELFENAAQPYSHL  212 (268)
T ss_pred             chhcccccCc-------cccCCCCCcchhHHHHHHHHHHHhCCCCCCCCC
Confidence            8776432110       112235789999999999999997 67888653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.87  E-value=1.1e-21  Score=164.04  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=112.9

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|+||.||++... +|..+|+|.+........ ....+.+|+.+                           
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVK-EKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccch-hhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            5889999999999999999654 688899999865422111 12233344433                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-eEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-AFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-~~l~dfg~~~~~~~~~  151 (257)
                                                +..+++.|+.|||+.   +++|+||+|.||+++.++. ++++|||.+.......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM  156 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCCc
Confidence                                      234799999999999   9999999999999998864 6999999887653221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....|+..|+|              ||...+..++.++|+||||+++|++++|+.||...
T Consensus       157 ~~-------------~~~~~~~~~~~a--------------pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  205 (257)
T cd08225         157 EL-------------AYTCVGTPYYLS--------------PEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGN  205 (257)
T ss_pred             cc-------------ccccCCCccccC--------------HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            11             012347788999              55555555788999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.87  E-value=5e-22  Score=167.18  Aligned_cols=149  Identities=35%  Similarity=0.507  Sum_probs=111.3

Q ss_pred             ccceeeeecCceeEEEEEeC-----CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           49 HIKYCIGTGGYGSVYKAELP-----DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        49 ~~~~~lg~G~~g~V~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ++.+.||.|.||.||+|...     .+..|+||.++...  ..+..+.+..|++.                         
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv   79 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS--SEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLV   79 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS--SHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc--ccccceeeeeccccccccccccccccccccccccccccc
Confidence            45688999999999999654     36679999996532  22235566666665                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.|+.|||+.   +++|++|++.||+++.++.+||+|||++......
T Consensus        80 ~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~  156 (259)
T PF07714_consen   80 MEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEK  156 (259)
T ss_dssp             EE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence                                        334899999999999   9999999999999999999999999998765211


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ...           .......+...|+|              ||......++.++||||||+++||+++ |+.||...
T Consensus       157 ~~~-----------~~~~~~~~~~~~~a--------------PE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~  209 (259)
T PF07714_consen  157 SKY-----------KNDSSQQLPLRYLA--------------PEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY  209 (259)
T ss_dssp             SSE-----------EESTTSESGGGGS---------------HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS
T ss_pred             ccc-----------cccccccccccccc--------------cccccccccccccccccccccccccccccccccccc
Confidence            110           00111235667888              556555557889999999999999999 78999753

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.87  E-value=2.1e-21  Score=162.01  Aligned_cols=148  Identities=28%  Similarity=0.409  Sum_probs=114.2

Q ss_pred             ccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||+|++|.||++.. .+++.+++|.+........ ....+..|+..                           
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQK-EREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHH-HHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            588999999999999999954 4788999999875433221 12233333332                           


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.+++.|++|||+.   +++|+||+|.||+++.++.++++|||++......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence                                        233799999999999   9999999999999999999999999998766433


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..               ....++..|++              ||...+..++.++|+||+|+++|++++|+.||...
T Consensus       157 ~~---------------~~~~~~~~~~~--------------Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  204 (256)
T cd08530         157 MA---------------KTQIGTPHYMA--------------PEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR  204 (256)
T ss_pred             Cc---------------ccccCCccccC--------------HHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            11               11346778888              55555555688999999999999999999999754

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.87  E-value=2.3e-21  Score=161.86  Aligned_cols=148  Identities=30%  Similarity=0.457  Sum_probs=111.9

Q ss_pred             cccceeeeecCceeEEEEEeCC-----CCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELPD-----GKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      +++.+.||.|+||.||++....     +..||+|++.......  ..+.+..|+..                        
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ--QIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH--HHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            4577899999999999996643     3789999997653321  23344444433                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+++||+.   +++|+||+|+||++++++.++++|||++.....
T Consensus        79 i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~  155 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYD  155 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceeccc
Confidence                                         334799999999999   999999999999999999999999999876643


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ......            ....++..|++              ||...+..++.++|+||+|+++|+|++ |++||..
T Consensus       156 ~~~~~~------------~~~~~~~~y~~--------------Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~  207 (258)
T smart00219      156 DDYYKK------------KGGKLPIRWMA--------------PESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG  207 (258)
T ss_pred             cccccc------------ccCCCcccccC--------------hHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            311110            01225677888              555555567889999999999999998 8999974

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.87  E-value=9.4e-22  Score=166.84  Aligned_cols=151  Identities=28%  Similarity=0.401  Sum_probs=111.7

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH-----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------------------   97 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------------------   97 (257)
                      |++.+.||.|++|.||+|... +++.+|+|++.... ........+..|+.                             
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            678899999999999999765 58899999997653 11111122222322                             


Q ss_pred             ------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           98 ------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        98 ------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                              .+..|++.|+++||+.   +++|+||+|.||++++++.++++|||.+.........
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~  156 (287)
T cd07840          80 EYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSA  156 (287)
T ss_pred             ccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCCcc
Confidence                                    2445899999999999   9999999999999999999999999998765433210


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .            .....++..|+|||.+.+             ...++.++|+||||+++|+|++|+.||+..
T Consensus       157 ~------------~~~~~~~~~y~~PE~~~~-------------~~~~~~~~Dv~slG~~l~el~t~~~p~~~~  205 (287)
T cd07840         157 D------------YTNRVITLWYRPPELLLG-------------ATRYGPEVDMWSVGCILAELFLGKPIFQGS  205 (287)
T ss_pred             c------------ccccccccccCCceeeEc-------------cccCChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            0            011245677999543321             123578999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.87  E-value=1.2e-21  Score=165.11  Aligned_cols=149  Identities=28%  Similarity=0.495  Sum_probs=112.3

Q ss_pred             ccccceeeeecCceeEEEEEeCC--CCEEEEEEcCcccc-------ccHHHHHHHHHHHHH-------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELPD--GKVVALKKLHQSET-------EDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~~--~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~-------------------   98 (257)
                      +|++.+.||+|+||.||+|....  ++.+|+|.+.....       ........+..|...                   
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999997643  77899998753211       111122233333322                   


Q ss_pred             -------------------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           99 -------------------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                           +..|++.++.|||+ .   +++|+||+|.||+++.++.++|+|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeecCCCHHHEEECCCCcEEEec
Confidence                                                 33479999999996 5   899999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||.+........              .....|+..|++              ||...+..++.++|+||||+++|++++|
T Consensus       158 fg~~~~~~~~~~--------------~~~~~~~~~~~~--------------Pe~~~~~~~~~~~Dv~slG~ll~~l~~g  209 (269)
T cd08528         158 FGLAKQKQPESK--------------LTSVVGTILYSC--------------PEIVKNEPYGEKADVWAFGCILYQMCTL  209 (269)
T ss_pred             ccceeecccccc--------------cccccCcccCcC--------------hhhhcCCCCchHHHHHHHHHHHHHHHhC
Confidence            999876543221              122457788999              5666666678899999999999999999


Q ss_pred             CCCCcc
Q 039073          221 THPGEL  226 (257)
Q Consensus       221 ~~Pf~~  226 (257)
                      +.||..
T Consensus       210 ~~p~~~  215 (269)
T cd08528         210 QPPFYS  215 (269)
T ss_pred             CCcccc
Confidence            999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.87  E-value=2.1e-21  Score=162.51  Aligned_cols=152  Identities=28%  Similarity=0.437  Sum_probs=110.2

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||.|+||.||++... +|+.+++|.+...........+.+..|..+                                  
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            588999999999765 599999999875433222223344444332                                  


Q ss_pred             -----------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccccc
Q 039073           99 -----------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT  161 (257)
Q Consensus        99 -----------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  161 (257)
                                       +..|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++...........     .
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-----~  152 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINL-----N  152 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccc-----c
Confidence                             344899999999999   999999999999999999999999999775433211100     0


Q ss_pred             CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       162 ~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..........++..|++              ||.......+.++|+||||+++|++++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~--------------Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  204 (265)
T cd05579         153 DDEKEDKRIVGTPDYIA--------------PEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGE  204 (265)
T ss_pred             cccccccCcccCccccC--------------HHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            00001123456778888              55555555688999999999999999999999743

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.87  E-value=1.9e-21  Score=166.54  Aligned_cols=145  Identities=28%  Similarity=0.403  Sum_probs=109.8

Q ss_pred             cceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------------
Q 039073           50 IKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------------   98 (257)
Q Consensus        50 ~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------------   98 (257)
                      ....||+|+||.||++.. .++..||||++......   ....+..|+..                              
T Consensus        24 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             hHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchh---HHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCC
Confidence            346799999999999965 47889999988543211   12234444332                              


Q ss_pred             --------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073           99 --------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus        99 --------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                          +..|++.+++|||+.   +++|+||+|+||+++.++.++++|||++.........     
T Consensus       101 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~-----  172 (292)
T cd06657         101 GGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-----  172 (292)
T ss_pred             CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccccc-----
Confidence                                344899999999999   9999999999999999999999999987654321110     


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                              .....|+..|++              ||...+..++.++|+||+|+++|++++|..||.+.
T Consensus       173 --------~~~~~~~~~y~~--------------pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~  219 (292)
T cd06657         173 --------RKSLVGTPYWMA--------------PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  219 (292)
T ss_pred             --------ccccccCccccC--------------HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                    122457788999              55555555688999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=4.9e-22  Score=179.41  Aligned_cols=157  Identities=25%  Similarity=0.374  Sum_probs=124.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC--CCC--EEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP--DGK--VVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ..++.++.+.||+|+||.|++|.+.  .|+  .||||.++......  ...+|.+|+.+                     
T Consensus       108 pee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~--~mddflrEas~M~~L~H~hliRLyGvVl~qp~  185 (1039)
T KOG0199|consen  108 PEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA--IMDDFLREASHMLKLQHPHLIRLYGVVLDQPA  185 (1039)
T ss_pred             cHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch--hHHHHHHHHHHHHhccCcceeEEeeeeccchh
Confidence            3445567889999999999999664  344  58999998765543  36788888766                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.||+.|++||..+   +++||||...|+++.+...+||+|||+.+..
T Consensus       186 mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaL  262 (1039)
T KOG0199|consen  186 MMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRAL  262 (1039)
T ss_pred             hHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceecc
Confidence                                           344999999999999   9999999999999999999999999999877


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ...+......          ....-...|.|              ||++.-..++.++|+|+|||++|||++ |..||-+
T Consensus       263 g~ned~Yvm~----------p~rkvPfAWCa--------------PEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G  318 (1039)
T KOG0199|consen  263 GENEDMYVMA----------PQRKVPFAWCA--------------PESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVG  318 (1039)
T ss_pred             CCCCcceEec----------CCCcCcccccC--------------HhHhccccccccchhhhhhhhHHhhhccCCCCCCC
Confidence            6544322110          00111346778              888888889999999999999999998 9999997


Q ss_pred             ccc
Q 039073          227 LSS  229 (257)
Q Consensus       227 ~~~  229 (257)
                      ...
T Consensus       319 ~~g  321 (1039)
T KOG0199|consen  319 CRG  321 (1039)
T ss_pred             CCH
Confidence            643

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.87  E-value=2.1e-21  Score=165.48  Aligned_cols=151  Identities=28%  Similarity=0.439  Sum_probs=111.0

Q ss_pred             ccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccc-cHHHHHHHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETE-DSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~-----------------------   98 (257)
                      +|++.+.||+|++|.||++..    .++..||||.++..... .....+.+..|+.+                       
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            488899999999999999953    35788999998643211 11112223333332                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.++.|||+.   +++|+||+|.||+++.++.++++|||++.....
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  157 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECcccccccc
Confidence                                         234899999999998   999999999999999999999999999876533


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC--CCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV--VTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~--~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .....            .....|+..|++||.+              .+..  .+.++|+||+|+++|+|++|..||..
T Consensus       158 ~~~~~------------~~~~~~~~~y~aPE~~--------------~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  210 (288)
T cd05583         158 EEEER------------AYSFCGTIEYMAPEVI--------------RGGSGGHDKAVDWWSLGVLTFELLTGASPFTV  210 (288)
T ss_pred             ccccc------------cccccCCccccCHHHh--------------cCCCCCCcchhhhHHHHHHHHHHHhCCCCccc
Confidence            22110            0123577889995543              3322  47799999999999999999999963

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.87  E-value=5.4e-21  Score=159.16  Aligned_cols=153  Identities=28%  Similarity=0.432  Sum_probs=118.3

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|...+.||+|++|.||+|... +++.|++|++...... ....+.+..|+..                           
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS-EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc-hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            4788899999999999999665 7889999998765432 1223444444443                           


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..+++.+++|||+.   +++|+||+|+||+++.++.++|+|||.+........
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  156 (260)
T cd06606          80 LEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIET  156 (260)
T ss_pred             EEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccccc
Confidence                                      334899999999998   999999999999999999999999999887654332


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...           .....++..|++              ||...+...+.++|+||+|+++|++++|..||....
T Consensus       157 ~~~-----------~~~~~~~~~y~~--------------pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         157 GEG-----------TGSVRGTPYWMA--------------PEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             ccc-----------ccCCCCCccccC--------------HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            100           012346778888              555555557899999999999999999999997653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.87  E-value=3.1e-21  Score=163.45  Aligned_cols=150  Identities=25%  Similarity=0.309  Sum_probs=112.4

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |++.+.||+|++|.||++... +++.+++|++........ ....+..|+..                            
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEG-IPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccch-hHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEec
Confidence            567889999999999999664 688999999875433211 11222233222                            


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             ++.+++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+.........  
T Consensus        80 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~--  154 (283)
T cd05118          80 MDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP--  154 (283)
T ss_pred             cCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc--
Confidence                                   445899999999999   9999999999999999999999999988766433210  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                 .....++..|++||.              ..+. .++.++|+||+|+++|++++|+.||...+
T Consensus       155 -----------~~~~~~~~~~~~PE~--------------~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~  203 (283)
T cd05118         155 -----------YTHYVVTRWYRAPEL--------------LLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS  203 (283)
T ss_pred             -----------ccCccCcccccCcHH--------------HhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence                       011245677888554              4433 46889999999999999999999997544

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.86  E-value=4.3e-21  Score=159.89  Aligned_cols=150  Identities=31%  Similarity=0.449  Sum_probs=115.6

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +|++.+.||.|++|.||++... ++..+++|++....... .....+..|+++                           
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSE-KEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCCh-HHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            5889999999999999999664 68899999997643321 112333344332                           


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..+++.|+.+||+.   +++|+||+|+||+++.++.++++|||.+......
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence                                        334799999999999   9999999999999999999999999988765332


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...             .....|+..|++              ||...+..++.++|+||+|+++++|++|+.||+..
T Consensus       157 ~~~-------------~~~~~~~~~y~~--------------pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  206 (258)
T cd08215         157 VDL-------------AKTVVGTPYYLS--------------PELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE  206 (258)
T ss_pred             cce-------------ecceeeeecccC--------------hhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC
Confidence            210             122457788999              55555555788999999999999999999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.86  E-value=3.1e-21  Score=163.35  Aligned_cols=149  Identities=26%  Similarity=0.360  Sum_probs=110.3

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH-----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------------------   97 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------------------   97 (257)
                      |++.+.||+|.+|.||+|... +++.|++|++....... ...+.+..|+.                             
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEE-GIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccc-cccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            567788999999999999664 68999999997643111 11112222222                             


Q ss_pred             ----------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           98 ----------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        98 ----------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                            .+..+++.|+.+||+.   +++|+||+|+||+++.++.++|+|||.+.........  
T Consensus        80 ~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~--  154 (282)
T cd07829          80 CDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT--  154 (282)
T ss_pred             cCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCccc--
Confidence                                  1345899999999999   9999999999999999999999999998765432211  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                 .....++..|+|||.              ..+. .++.++|+||+|+++||+++|+.||...
T Consensus       155 -----------~~~~~~~~~~~aPE~--------------~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  202 (282)
T cd07829         155 -----------YTHEVVTLWYRAPEI--------------LLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD  202 (282)
T ss_pred             -----------cCccccCcCcCChHH--------------hcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                       111234567889554              4333 4578999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.86  E-value=5.8e-21  Score=161.35  Aligned_cols=98  Identities=30%  Similarity=0.434  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      +..|++.|++|||+.   +++|+||||+||+++.++.++++|||++.........              .....+..|+|
T Consensus       117 ~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~--------------~~~~~~~~y~a  179 (270)
T cd05047         117 FAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK--------------TMGRLPVRWMA  179 (270)
T ss_pred             HHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCCCCccccchhhhc--------------cCCCCccccCC
Confidence            344799999999998   9999999999999999999999999987532211000              01123456888


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                                    ||...+..++.++|+||||+++|||++ |..||.+.
T Consensus       180 --------------pE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  215 (270)
T cd05047         180 --------------IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  215 (270)
T ss_pred             --------------hHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence                          555555567889999999999999997 99999753

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.86  E-value=1.9e-21  Score=169.43  Aligned_cols=167  Identities=25%  Similarity=0.266  Sum_probs=113.3

Q ss_pred             cccccc-ceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHH-----------HHHHHHHHHHH-------------
Q 039073           45 TEEFHI-KYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSA-----------FVKSFQNEAHV-------------   98 (257)
Q Consensus        45 ~~~~~~-~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~-----------~~~~~~~e~~~-------------   98 (257)
                      .++|.. .+.||.|+||.||+|.. .+++.||+|++.........           ....+.+|+.+             
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            466764 57799999999999965 46899999998654222100           00112233332             


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                           ++.|++.|+.|||++   +++|+||+|+||+++.++.++++||
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~df  163 (335)
T PTZ00024         87 DVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADF  163 (335)
T ss_pred             EEEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCc
Confidence                                                 445899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCcccccc-CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHh
Q 039073          142 GTARLLHVDSSNRPYEWALT-DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~  219 (257)
                      |.+................. ..........++..|+|||              ...+. .++.++|+||+||++|+|++
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE--------------~~~~~~~~~~~~Dv~slG~~l~el~t  229 (335)
T PTZ00024        164 GLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPE--------------LLMGAEKYHFAVDMWSVGCIFAELLT  229 (335)
T ss_pred             cceeecccccccccccccccccccccccccccccCCCCCh--------------hcccCCCCCcHHHHHHHHHHHHHHHh
Confidence            99876542211100000000 0000011234577889954              44332 25789999999999999999


Q ss_pred             CCCCCcccc
Q 039073          220 GTHPGELLS  228 (257)
Q Consensus       220 G~~Pf~~~~  228 (257)
                      |+.||.+..
T Consensus       230 g~~p~~~~~  238 (335)
T PTZ00024        230 GKPLFPGEN  238 (335)
T ss_pred             CCCCCCCCC
Confidence            999997543

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.86  E-value=8.2e-22  Score=181.63  Aligned_cols=165  Identities=27%  Similarity=0.434  Sum_probs=133.3

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      .-+.++.+-.+++.|++...+|.|.+|+||++. .++++.+|+|++......+++    ...|.++              
T Consensus         7 ~~~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deE----iE~eynil~~~~~hpnv~~fy   82 (953)
T KOG0587|consen    7 MDIDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEE----IELEYNMLKKYSHHPNVATFY   82 (953)
T ss_pred             cccchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHH----HHHHHHHHHhccCCCCcceEE
Confidence            345677778889999999999999999999994 557999999999876544432    2222222              


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           99 ---------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        99 ---------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                   +.+.++.|+.+||.+   .++|||+|..|||++.+
T Consensus        83 g~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e  159 (953)
T KOG0587|consen   83 GAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTEN  159 (953)
T ss_pred             EEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEecc
Confidence                                                         233788999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.+||.|||++...+....+             .+..+||+.|||||++.|-..+.         ..|+.++|+||||++
T Consensus       160 ~~VKLvDFGvSaQldsT~gr-------------RnT~iGtP~WMAPEViac~e~~d---------~tyd~R~D~WsLGIT  217 (953)
T KOG0587|consen  160 AEVKLVDFGVSAQLDSTVGR-------------RNTFIGTPYWMAPEVIACDESPD---------ATYDYRSDLWSLGIT  217 (953)
T ss_pred             CcEEEeeeeeeeeeeccccc-------------ccCcCCCcccccceeeecccCCC---------CCcccccchhhccce
Confidence            99999999999877654433             24478999999999988775433         236889999999999


Q ss_pred             HHHHHhCCCCCccc
Q 039073          214 ALKVLMGTHPGELL  227 (257)
Q Consensus       214 l~ell~G~~Pf~~~  227 (257)
                      ..||..|.+|+-.+
T Consensus       218 aIEladG~PPl~Dm  231 (953)
T KOG0587|consen  218 AIEMAEGAPPLCDM  231 (953)
T ss_pred             eehhcCCCCCccCc
Confidence            99999999998754

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-21  Score=173.05  Aligned_cols=155  Identities=29%  Similarity=0.417  Sum_probs=127.8

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----------------------  101 (257)
                      +.+...+.++||+|-||.|.+++...+..||||+++.......  ..+|..|+++|++                      
T Consensus       536 PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~--r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI  613 (807)
T KOG1094|consen  536 PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNA--RNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMI  613 (807)
T ss_pred             chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhH--HHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHH
Confidence            4566788999999999999999998889999999998654433  5788888887543                      


Q ss_pred             -------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073          102 -------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus       102 -------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                     ||+.|++||.+.   +++||||.+.|+|+|.++++||+|||+++.....
T Consensus       614 ~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg  690 (807)
T KOG1094|consen  614 TEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG  690 (807)
T ss_pred             HHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccC
Confidence                                           899999999998   9999999999999999999999999999866543


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH--hCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL--MGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell--~G~~Pf~~~~  228 (257)
                      ..-..           .....-..+|||              +|.+.-+.+++++|+|+||+++||++  +...||..++
T Consensus       691 ~yy~v-----------qgr~vlpiRwma--------------wEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt  745 (807)
T KOG1094|consen  691 DYYRV-----------QGRAVLPIRWMA--------------WESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLT  745 (807)
T ss_pred             Cceee-----------ecceeeeeeehh--------------HHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhh
Confidence            32111           112233568999              88899889999999999999999975  5789998654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-21  Score=162.36  Aligned_cols=176  Identities=17%  Similarity=0.310  Sum_probs=137.1

Q ss_pred             ccccccceeeeecCceeEEEEE-eCCCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      .-.|.+.++||+|+||+++.|+ .-+++.||||.- +.+....+...++..                             
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE-PrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE-PRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEec-cccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            4469999999999999999994 457999999955 333333332222221                             


Q ss_pred             -------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-----CeEEeeccCccccccC
Q 039073           95 -------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-----EAFVADFGTARLLHVD  150 (257)
Q Consensus        95 -------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-----~~~l~dfg~~~~~~~~  150 (257)
                                         .+..+|.|++.-++++|++   .++.|||||+|+||...+     .+.+.|||+++.+..+
T Consensus       106 LGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp  182 (449)
T KOG1165|consen  106 LGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDP  182 (449)
T ss_pred             hCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcCc
Confidence                               1222567999999999999   999999999999997544     3789999999999877


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSL  230 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~  230 (257)
                      .+..+.      .+++...+.||.+||+              ..++.|...+++.|+-|+|-++.+.+-|..||+++..-
T Consensus       183 ~TkqHI------PYrE~KSLsGTARYMS--------------INTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~  242 (449)
T KOG1165|consen  183 KTKQHI------PYREHKSLSGTARYMS--------------INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAD  242 (449)
T ss_pred             cccccC------ccccccccccceeeeE--------------eeccccchhhhhhhHHHhhhhhhhhccCCCccccccCc
Confidence            776654      3444567889999999              99999999999999999999999999999999997433


Q ss_pred             cCCCCCcchhhhhhcccC
Q 039073          231 SSSSGPKIMLIDVLDQRL  248 (257)
Q Consensus       231 ~~~~~~~~~~~~i~~~~l  248 (257)
                      .    .++++.+|.+.+=
T Consensus       243 t----nK~kYeKIGe~Kr  256 (449)
T KOG1165|consen  243 T----NKEKYEKIGETKR  256 (449)
T ss_pred             c----hHHHHHHhccccc
Confidence            3    4556666655443

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.86  E-value=3.6e-21  Score=167.32  Aligned_cols=152  Identities=21%  Similarity=0.312  Sum_probs=105.7

Q ss_pred             eeeeec--CceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------------
Q 039073           52 YCIGTG--GYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------------   98 (257)
Q Consensus        52 ~~lg~G--~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------------   98 (257)
                      ..||+|  +||+||++.+ .+|+.||+|++....... ...+.+.+|+.+                              
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTE-EHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            456676  8999999965 479999999987543322 223444444433                              


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             +..|++.||+|||+.   +++||||||+||+++.++.++++||+.+...........
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAK  159 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccc
Confidence                                   334899999999998   999999999999999999999999976543221111100


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC--CCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM--VVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~--~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .      .........++..|++||+              ..+.  .++.++|+||+||++|+|++|+.||...
T Consensus       160 ~------~~~~~~~~~~~~~y~aPE~--------------~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         160 V------VYDFPQFSTSVLPWLSPEL--------------LRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             c------cccccccccCccCccChhh--------------hcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            0      0000011234567899554              4332  3578999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.86  E-value=6.1e-21  Score=160.75  Aligned_cols=95  Identities=23%  Similarity=0.288  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-------eEEeeccCccccccCCCCCCccccccCCCccccccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-------AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII  171 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (257)
                      ++.|+++|++|||+.   +++||||||+||+++.++.       ++++|||++......                 ....
T Consensus       110 i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~-----------------~~~~  169 (262)
T cd05077         110 VAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR-----------------QECV  169 (262)
T ss_pred             HHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc-----------------cccc
Confidence            445899999999999   9999999999999987664       799999987644211                 1234


Q ss_pred             ccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHH-hCCCCCccc
Q 039073          172 GCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVL-MGTHPGELL  227 (257)
Q Consensus       172 gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell-~G~~Pf~~~  227 (257)
                      ++..|+|||              ... +..++.++|||||||++|||+ .|..||...
T Consensus       170 ~~~~y~aPE--------------~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  213 (262)
T cd05077         170 ERIPWIAPE--------------CVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDK  213 (262)
T ss_pred             ccccccChh--------------hhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCc
Confidence            677899954              443 334688999999999999998 599998743

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.85  E-value=1.3e-20  Score=156.71  Aligned_cols=144  Identities=29%  Similarity=0.424  Sum_probs=110.6

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||.|+||.||++... +++.+++|.+.............+..|+.+                                  
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999664 588999999876544333233444444433                                  


Q ss_pred             -----------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCcccccc
Q 039073           99 -----------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT  161 (257)
Q Consensus        99 -----------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  161 (257)
                                       +..|++.|+.|||+.   +++|+||+|.||+++.++.++++|||.+.........        
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~--------  149 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR--------  149 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCc--------
Confidence                             233799999999998   9999999999999999999999999988765332110        


Q ss_pred             CCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       162 ~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                           .....++..|++              ||...+...+.++|+||||+++|++++|+.||...
T Consensus       150 -----~~~~~~~~~~~~--------------Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  196 (250)
T cd05123         150 -----TNTFCGTPEYLA--------------PEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE  196 (250)
T ss_pred             -----ccCCcCCccccC--------------hHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                 122356778989              55555555688999999999999999999999754

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.85  E-value=4.3e-21  Score=161.62  Aligned_cols=101  Identities=28%  Similarity=0.386  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-----CeEEeeccCccccccCCCCCCccccccCCCccccccccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-----EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC  173 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  173 (257)
                      ++.|++.|+.|||+.   +++|+||+|+||+++.++     .++++|||++...........           .....++
T Consensus       111 ~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~-----------~~~~~~~  176 (269)
T cd05044         111 ICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRK-----------EGEGLLP  176 (269)
T ss_pred             HHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCccccccccccccccc-----------CcccCCC
Confidence            345899999999998   999999999999999877     899999999875532211100           0112345


Q ss_pred             ccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       174 ~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..|+|              ||...+..++.++|+||||+++|+|++ |+.||...
T Consensus       177 ~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~  217 (269)
T cd05044         177 VRWMA--------------PESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPAL  217 (269)
T ss_pred             ccccC--------------HHHHccCCcccchhHHHHHHHHHHHHHcCCCCCccc
Confidence            67888              565666667899999999999999998 99999743

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.1e-22  Score=164.51  Aligned_cols=158  Identities=22%  Similarity=0.331  Sum_probs=112.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ...|+-...+|+|.||.||+|+. ++|++||+|+.--....+ .+-....+|+.+                         
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKe-GfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhcccc-CCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            34577788999999999999955 578889887664211000 000011112111                         


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        +.+++..||.|+|.+   .++|||+|++|++|+.++.++|+|||++
T Consensus        95 ~r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669|consen   95 DRATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             ccceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccc
Confidence                                              233799999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +.+.........         ......-|..|.+||++.+.+.             |+.+.|+|..||++.||.+|.+-|
T Consensus       172 r~fs~~~n~~kp---------rytnrvvTLwYrppEllLG~r~-------------yg~~iDiWgAgCimaeMwtrspim  229 (376)
T KOG0669|consen  172 RAFSTSKNVVKP---------RYTNRVVTLWYRPPELLLGDRE-------------YGPPIDIWGAGCIMAEMWTRSPIM  229 (376)
T ss_pred             cceecccccCCC---------CcccceeeeecCCHHHhhcccc-------------cCCcchhHhHHHHHHHHHccCccc
Confidence            766433322111         0112234778888555544433             588999999999999999999999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      ++.+
T Consensus       230 qgnt  233 (376)
T KOG0669|consen  230 QGNT  233 (376)
T ss_pred             cCCh
Confidence            9754

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.85  E-value=7e-22  Score=176.64  Aligned_cols=148  Identities=27%  Similarity=0.445  Sum_probs=116.2

Q ss_pred             ccceeeeecCceeEEEEEe-CCCCEEEEEEcCccc-cccHHHHHHHHHHHHH----------------------------
Q 039073           49 HIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSE-TEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        49 ~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      ++...||+|+|-+||+|-+ .+|..||=-.++..+ ...+...+.+..|+++                            
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            4556799999999999954 467777633332221 2233446778888876                            


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-CCCCeEEeeccCccccccCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-SNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++||++||.|||++ .+.|+|||||=+||+|+ ..|.+||+|+|+|.....+..
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a  201 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA  201 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhcccc
Confidence                                     345999999999998 78999999999999997 558999999999998765432


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .               ..+||+-|||||+|-               -.|+..+||||||+.++||+|+..||.-.
T Consensus       202 k---------------svIGTPEFMAPEmYE---------------E~YnE~VDVYaFGMCmLEMvT~eYPYsEC  246 (632)
T KOG0584|consen  202 K---------------SVIGTPEFMAPEMYE---------------ENYNELVDVYAFGMCMLEMVTSEYPYSEC  246 (632)
T ss_pred             c---------------eeccCccccChHHHh---------------hhcchhhhhhhhhHHHHHHHhccCChhhh
Confidence            2               258999999988874               12689999999999999999999999743

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.85  E-value=1.3e-20  Score=162.58  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=105.8

Q ss_pred             ccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------------
Q 039073           49 HIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------------   98 (257)
Q Consensus        49 ~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------------   98 (257)
                      .+.+.+|.|+++.++++.. +++.||+|++....... .....+..|+.+                              
T Consensus         5 ~i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~-~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSK-EDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMA   82 (314)
T ss_pred             hhhHhhcCCceEEEEEecC-CCCEEEEEEEeccccch-hHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccC
Confidence            3444445555555555444 68999999987642222 234455555544                              


Q ss_pred             -----------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           99 -----------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        99 -----------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                             ++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+...........
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~  159 (314)
T cd08216          83 YGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR  159 (314)
T ss_pred             CCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeecccccccc
Confidence                                   334899999999999   999999999999999999999999998775532211100


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .    ...  ......++..|+|||++.+.            ...++.++|+||+||++|||++|+.||...
T Consensus       160 ~----~~~--~~~~~~~~~~y~aPE~~~~~------------~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         160 V----VHD--FPKSSVKNLPWLSPEVLQQN------------LQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             c----ccc--ccccccccccccCHHHhcCC------------CCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            0    000  01223467789996554321            123578999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.85  E-value=1.9e-20  Score=170.36  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      +..|++.++.|||+.   +++||||||+||+++.++.++|+|||++..........            .....+++.|++
T Consensus       314 i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~------------~~~g~~tp~Y~a  378 (507)
T PLN03224        314 VMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFN------------PLYGMLDPRYSP  378 (507)
T ss_pred             HHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccC------------ccccCCCcceeC
Confidence            456899999999999   99999999999999999999999999986543221110            011234789999


Q ss_pred             hhHhhhcCCCCchhhhhhh--------cCCCCCccchhhHHHHHHHHHhCCC-CCcc
Q 039073          179 LWFYFQRHNLMPFHVELAY--------TMVVTEKCDVYSFGVVALKVLMGTH-PGEL  226 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~--------~~~~~~~~DiwSlG~~l~ell~G~~-Pf~~  226 (257)
                      ||++..........+....        ........|+||+||++|+|++|.. ||..
T Consensus       379 PE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~  435 (507)
T PLN03224        379 PEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVAN  435 (507)
T ss_pred             hhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccc
Confidence            9998654332211111110        1112345899999999999999876 7764

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.85  E-value=1.8e-20  Score=158.96  Aligned_cols=150  Identities=19%  Similarity=0.312  Sum_probs=109.5

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHH--HHHHH-------------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAF--VKSFQ-------------------------------   93 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~--~~~~~-------------------------------   93 (257)
                      |++.+.||.|++|.||+|... +++.|+||++..........  .+++.                               
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            678899999999999999765 57889999886532211100  00000                               


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073           94 ------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus        94 ------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                        .++..+..|++.++.|||++   +++|+||+|.||+++.++.++|+|||++.........  
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~--  155 (283)
T cd07830          81 EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPY--  155 (283)
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCCc--
Confidence                              01112445899999999999   9999999999999999999999999998755322111  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                  ....++..|+|||++..             ...++.++|+||||++++++++|++||...
T Consensus       156 ------------~~~~~~~~~~aPE~~~~-------------~~~~~~~~Di~s~G~~l~el~~g~~~~~~~  202 (283)
T cd07830         156 ------------TDYVSTRWYRAPEILLR-------------STSYSSPVDIWALGCIMAELYTLRPLFPGS  202 (283)
T ss_pred             ------------CCCCCcccccCceeeec-------------CcCcCCccchhhHHHHHHHHHhCCCccCCC
Confidence                        12346778999544321             223578999999999999999999999654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.85  E-value=1.1e-20  Score=173.32  Aligned_cols=151  Identities=28%  Similarity=0.442  Sum_probs=116.4

Q ss_pred             cccceeeeecCceeEEEEEe-CC----CCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PD----GKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ....++||.|+||+||+|-+ +.    .-+||||++........  ..++..|+-.++                      
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~--s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlv  775 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKA--SIELLDEALRMASLDHPNLLRLLGVCMLSTLQLV  775 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchh--hHHHHHHHHHHhcCCCchHHHHhhhcccchHHHH
Confidence            45678999999999999943 33    33789999876543322  345555544322                      


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                   .||++|+.|||++   +++||||...|+|+.+..++++.|||+++......
T Consensus       776 tq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             HHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence                                         2899999999999   99999999999999999999999999999876554


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ..-..           ....-.+-|||              -|.+....|+.++|||||||++||++| |..|++++.
T Consensus       853 ~ey~~-----------~~gK~pikwma--------------le~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~  905 (1177)
T KOG1025|consen  853 KEYSA-----------PGGKVPIKWMA--------------LESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP  905 (1177)
T ss_pred             ccccc-----------cccccCcHHHH--------------HHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC
Confidence            32211           01111345777              788888889999999999999999999 999999864

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.85  E-value=1e-20  Score=158.19  Aligned_cols=95  Identities=24%  Similarity=0.303  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-------CeEEeeccCccccccCCCCCCccccccCCCccccccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-------EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII  171 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (257)
                      ++.|++.||.|||++   +++|+||||+||+++.++       .++++|||++.......                 ...
T Consensus       106 ~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----------------~~~  165 (259)
T cd05037         106 VAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSRE-----------------ERV  165 (259)
T ss_pred             HHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCCCccccccccc-----------------ccc
Confidence            345899999999999   999999999999999887       79999999987543211                 123


Q ss_pred             ccccchhhhHhhhcCCCCchhhhhhhcC--CCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          172 GCISYYALWFYFQRHNLMPFHVELAYTM--VVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       172 gt~~y~ape~~~~~~~~~~~~pe~~~~~--~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ++..|+|||++              .+.  .++.++|+||||+++|++++ |..||...
T Consensus       166 ~~~~y~aPE~~--------------~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~  210 (259)
T cd05037         166 ERIPWIAPECI--------------RNGQASLTIAADKWSFGTTLLEICSNGEEPLSTL  210 (259)
T ss_pred             cCCCccChhhh--------------cCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccC
Confidence            45678895544              333  46889999999999999999 68888765

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.85  E-value=2.3e-20  Score=176.52  Aligned_cols=99  Identities=31%  Similarity=0.538  Sum_probs=81.5

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|.+.+.||.|+||.||+|... +++.||||+++............+..|+.+                         
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            578999999999999999999665 688999999976544333334444444443                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                ++.||+.||.|||.+   +|+||||||+||+++.++.++|+|||+++.
T Consensus        83 mEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~~  153 (669)
T cd05610          83 MEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCcc
Confidence                                      344899999999998   999999999999999999999999999863

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-21  Score=178.55  Aligned_cols=154  Identities=31%  Similarity=0.406  Sum_probs=120.3

Q ss_pred             cccccceeeeecCceeEEEEEeC-C---CCEEEEEEcCccccccHHHHHHHHHHHHHH----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-D---GKVVALKKLHQSETEDSAFVKSFQNEAHVL----------------------   99 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l----------------------   99 (257)
                      ..-.+++.||.|.||.|++|..+ .   ...||||.++....  +....+|+.|+.++                      
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gyt--ekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvM  706 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYT--EKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVM  706 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCcc--HHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeE
Confidence            34568899999999999999654 2   34699999987543  23356888887773                      


Q ss_pred             ------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          100 ------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       100 ------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                    .++|+.|+.||.++   +.+||||...|||++++-.||++|||+++....
T Consensus       707 IiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvled  783 (996)
T KOG0196|consen  707 IITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  783 (996)
T ss_pred             EEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeeccc
Confidence                                          34799999999999   999999999999999999999999999997644


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      .......          .....-..+|.|              ||.+....++..+|+||+|+++||.++ |.-||=.++
T Consensus       784 d~~~~yt----------t~GGKIPiRWTA--------------PEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmS  839 (996)
T KOG0196|consen  784 DPEAAYT----------TLGGKIPIRWTA--------------PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS  839 (996)
T ss_pred             CCCcccc----------ccCCccceeecC--------------hhHhhhcccCchhhccccceEEEEecccCCCcccccc
Confidence            3311100          011112357999              888888889999999999999999887 999986543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.84  E-value=4.1e-21  Score=154.42  Aligned_cols=189  Identities=20%  Similarity=0.361  Sum_probs=137.7

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHH-HHHH--------------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFV-KSFQ--------------------   93 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~-~~~~--------------------   93 (257)
                      .+.+++. ...+|.+.++||.|+||.+|.| ....|..||||.-........-.. ....                    
T Consensus         6 ~s~~~~i-v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~   84 (341)
T KOG1163|consen    6 GSLEELI-VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKD   84 (341)
T ss_pred             cchhhhe-eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccc
Confidence            3444544 3567999999999999999999 567899999998764322111000 0000                    


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccCc
Q 039073           94 --------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGTA  144 (257)
Q Consensus        94 --------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~~  144 (257)
                                                ..+-.|+.|++.-++|+|.+   +++||||||+|++..-..+   +.++|||++
T Consensus        85 ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLa  161 (341)
T KOG1163|consen   85 YNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLA  161 (341)
T ss_pred             cceeeeeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccch
Confidence                                      11223677999999999999   9999999999999975543   579999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +.+....+..+.      .++.-..+.||.+|.+              .....+...+++.|+-|+|.++.+..-|..||
T Consensus       162 Kky~d~~t~~HI------pyre~r~ltGTaRYAS--------------inAh~g~eqSRRDDmeSvgYvLmYfnrG~LPW  221 (341)
T KOG1163|consen  162 KKYRDIRTRQHI------PYREDRNLTGTARYAS--------------INAHLGIEQSRRDDMESVGYVLMYFNRGSLPW  221 (341)
T ss_pred             hhhccccccccC------ccccCCccceeeeehh--------------hhhhhhhhhhhhhhhhhhcceeeeeecCCCcc
Confidence            988766554443      2222345789999988              77777777899999999999999999999999


Q ss_pred             cccccccCCCCCcchhhhhhcccCCCCC
Q 039073          225 ELLSSLSSSSGPKIMLIDVLDQRLSPPV  252 (257)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~  252 (257)
                      +++....    ..++..+|...++..++
T Consensus       222 Qglka~t----k~QKyEkI~EkK~s~~i  245 (341)
T KOG1163|consen  222 QGLKAAT----KKQKYEKISEKKMSTPI  245 (341)
T ss_pred             cccchhh----HHHHHHHHHHhhcCCCH
Confidence            9975444    34455556555555443

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.83  E-value=2.9e-21  Score=169.46  Aligned_cols=153  Identities=20%  Similarity=0.244  Sum_probs=119.9

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH------------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE------------------------   95 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e------------------------   95 (257)
                      ......+|.+....|.|-|+.|.+|.. ..|+.||||++.......    +.=+.|                        
T Consensus       427 gE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~----KtGl~EleiLkKL~~AD~Edk~Hclrl~r~  502 (752)
T KOG0670|consen  427 GELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMH----KTGLKELEILKKLNDADPEDKFHCLRLFRH  502 (752)
T ss_pred             hhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHh----hhhhHHHHHHHHhhccCchhhhHHHHHHHH
Confidence            345578899999999999999999955 458899999997653211    111122                        


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEe
Q 039073           96 -----------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVA  139 (257)
Q Consensus        96 -----------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~  139 (257)
                                                         ++.++.|+.-||..|-.+   +|+|.||||.|||++.. ..++||
T Consensus       503 F~hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLC  579 (752)
T KOG0670|consen  503 FKHKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLC  579 (752)
T ss_pred             hhhcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeec
Confidence                                               222566999999999998   99999999999999855 457999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||.|.........               ...=+..|.|              ||++.|.+|+...|+||.||+|||+.|
T Consensus       580 DfGSA~~~~eneit---------------PYLVSRFYRa--------------PEIiLG~~yd~~iD~WSvgctLYElYt  630 (752)
T KOG0670|consen  580 DFGSASFASENEIT---------------PYLVSRFYRA--------------PEIILGLPYDYPIDTWSVGCTLYELYT  630 (752)
T ss_pred             cCcccccccccccc---------------HHHHHHhccC--------------cceeecCcccCCccceeeceeeEEeec
Confidence            99998876433321               1122556777              999999999999999999999999999


Q ss_pred             CCCCCccccc
Q 039073          220 GTHPGELLSS  229 (257)
Q Consensus       220 G~~Pf~~~~~  229 (257)
                      |+..|.|.++
T Consensus       631 GkIlFpG~TN  640 (752)
T KOG0670|consen  631 GKILFPGRTN  640 (752)
T ss_pred             cceecCCCCc
Confidence            9999998643

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.83  E-value=1.1e-20  Score=158.69  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC--------eEEeeccCccccccCCCCCCccccccCCCcccccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE--------AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI  170 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~--------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (257)
                      ++.|++.|+.|||+.   +++||||||+||+++.++.        ++++|||++......                 ...
T Consensus       105 ~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~-----------------~~~  164 (258)
T cd05078         105 VAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK-----------------EIL  164 (258)
T ss_pred             HHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEecccccccccCCc-----------------hhc
Confidence            345899999999999   9999999999999987765        588999887543211                 113


Q ss_pred             cccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhC-CCCCccc
Q 039073          171 IGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMG-THPGELL  227 (257)
Q Consensus       171 ~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G-~~Pf~~~  227 (257)
                      .++..|+|||              ...+. .++.++|+||||+++|++++| ..||...
T Consensus       165 ~~~~~y~aPE--------------~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~  209 (258)
T cd05078         165 LERIPWVPPE--------------CIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL  209 (258)
T ss_pred             cccCCccCch--------------hccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc
Confidence            4677899954              44432 357899999999999999998 5676643

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=3.4e-21  Score=166.54  Aligned_cols=166  Identities=25%  Similarity=0.378  Sum_probs=122.7

Q ss_pred             ccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHH----HHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSA----FVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~----~~~~~~~e~~~---------------------   98 (257)
                      .++|-++..||+|+|+.||+| .....+.||+|+-...+.+..+    +.+...+|.++                     
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd  541 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD  541 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc
Confidence            568999999999999999999 5556788999988765544332    23334444433                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc---CCCCeEEeeccCc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD---SNLEAFVADFGTA  144 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~---~~~~~~l~dfg~~  144 (257)
                                                     +-.||+.||.||.+. .+.|+|-||||.|||+.   .-|.++|+|||++
T Consensus       542 sFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLS  620 (775)
T KOG1151|consen  542 SFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLS  620 (775)
T ss_pred             cceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchh
Confidence                                           334899999999876 78899999999999995   3467899999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +.+.........      .+-+.....||..|++||-+.-..          ....++.++||||.|+++|+++.|+.||
T Consensus       621 KIMdddSy~~vd------GmeLTSQgAGTYWYLPPEcFvVgk----------ePPKIsnKVDVWSvGVIFyQClYGrKPF  684 (775)
T KOG1151|consen  621 KIMDDDSYNSVD------GMELTSQGAGTYWYLPPECFVVGK----------EPPKISNKVDVWSVGVIFYQCLYGRKPF  684 (775)
T ss_pred             hhccCCccCccc------ceeeecccCceeeecCcceeecCC----------CCCccccceeeEeeehhhhhhhccCCCC
Confidence            988655433221      222234467899999955332110          1224689999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      ...
T Consensus       685 Ghn  687 (775)
T KOG1151|consen  685 GHN  687 (775)
T ss_pred             CCc
Confidence            753

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.83  E-value=3.6e-20  Score=157.08  Aligned_cols=95  Identities=25%  Similarity=0.303  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-------CeEEeeccCccccccCCCCCCccccccCCCccccccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-------EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII  171 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (257)
                      ++.|++.|++|||+.   +++||||||.||+++..+       .++++|||.+......                 ....
T Consensus       122 i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~-----------------~~~~  181 (274)
T cd05076         122 VAQQLASALSYLEDK---NLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR-----------------EERV  181 (274)
T ss_pred             HHHHHHHHHHHHHcC---CccCCCCCcccEEEeccCcccCccceeeecCCccccccccc-----------------cccc
Confidence            445899999999999   999999999999997643       3789999986543211                 1123


Q ss_pred             ccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHH-hCCCCCccc
Q 039073          172 GCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVL-MGTHPGELL  227 (257)
Q Consensus       172 gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell-~G~~Pf~~~  227 (257)
                      ++..|+||              |...+ ..++.++|+||||+++||++ +|+.||...
T Consensus       182 ~~~~~~aP--------------e~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  225 (274)
T cd05076         182 ERIPWIAP--------------ECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKER  225 (274)
T ss_pred             cCCcccCc--------------hhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            56779994              44433 34688999999999999985 699999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.83  E-value=8.4e-20  Score=153.11  Aligned_cols=149  Identities=23%  Similarity=0.323  Sum_probs=105.2

Q ss_pred             ccccceeeeecCceeEEEEEeC-CCCEEEEEEcCcccccc--HHHHHHHHHHHH--------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETED--SAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~--------------------------   97 (257)
                      +|.+.+.||.|+||.||++... .+..+++|.++......  ......+..|+.                          
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            5889999999999999999654 34445566554321110  000111112211                          


Q ss_pred             -----------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           98 -----------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        98 -----------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                   .+..|++.|+.|||+.   +++|+||+|+|++++. +.++++|||++....
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~  156 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLM  156 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecC
Confidence                                         1344799999999999   9999999999999975 569999999887653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .....             .....|+..|++              ||...+..++.++|+||+|+++|++++|..||..
T Consensus       157 ~~~~~-------------~~~~~~~~~~~~--------------pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~  207 (260)
T cd08222         157 GSCDL-------------ATTFTGTPYYMS--------------PEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG  207 (260)
T ss_pred             CCccc-------------ccCCCCCcCccC--------------HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            22111             112346778999              5555555568899999999999999999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.83  E-value=5.9e-20  Score=152.47  Aligned_cols=136  Identities=24%  Similarity=0.238  Sum_probs=100.9

Q ss_pred             cCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH------------------------------------------
Q 039073           57 GGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ------------------------------------------   93 (257)
Q Consensus        57 G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~------------------------------------------   93 (257)
                      |.+|+||++.. .+++.||+|++.......... ....                                          
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l   82 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRER-LTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNI   82 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHH-HHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhcCC
Confidence            88999999965 578999999997643211110 0000                                          


Q ss_pred             --HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCccccccc
Q 039073           94 --NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII  171 (257)
Q Consensus        94 --~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (257)
                        .++..++.|++.|+.|||+.   +++|+||||+||+++.++.++++|||.+.......                ....
T Consensus        83 ~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~----------------~~~~  143 (237)
T cd05576          83 PEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC----------------DGEA  143 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcccccc----------------ccCC
Confidence              11222456899999999998   99999999999999999999999999765443211                1123


Q ss_pred             ccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       172 gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ++..|+|              ||...+..++.++|+||+|+++||+++|+.||..
T Consensus       144 ~~~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~  184 (237)
T cd05576         144 VENMYCA--------------PEVGGISEETEACDWWSLGAILFELLTGKTLVEC  184 (237)
T ss_pred             cCccccC--------------CcccCCCCCCchhhHHHHHHHHHHHHHCcchhhc
Confidence            4566888              5555555678899999999999999999988764

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.83  E-value=6.7e-21  Score=168.95  Aligned_cols=160  Identities=23%  Similarity=0.347  Sum_probs=119.8

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHH-----HHHH--------------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVK-----SFQN--------------   94 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~-----~~~~--------------   94 (257)
                      .+-.+--.....+|...+.+|+|+||+|+.|.+ ++...|+||.+.+.+.-....++     ..-.              
T Consensus       550 ~~~~e~~~~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~  629 (772)
T KOG1152|consen  550 NIGCEKEYKKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHE  629 (772)
T ss_pred             cccceeeecccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCcc
Confidence            333444445567799999999999999999944 46778999998765321111110     0001              


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           95 -----------------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        95 -----------------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                               |...+.+||+.|+..||+.   ||+|||||-+|++++++
T Consensus       630 NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~  706 (772)
T KOG1152|consen  630 NILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSN  706 (772)
T ss_pred             chhhhhheeecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecC
Confidence                                                     2333556999999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGV  212 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~  212 (257)
                      |.++|+|||.+.......               .....||..|.|||++              .|..| +..-|||++|+
T Consensus       707 g~~klidfgsaa~~ksgp---------------fd~f~gtv~~aapevl--------------~g~~y~gk~qdiwalgi  757 (772)
T KOG1152|consen  707 GFVKLIDFGSAAYTKSGP---------------FDVFVGTVDYAAPEVL--------------GGEKYLGKPQDIWALGI  757 (772)
T ss_pred             CeEEEeeccchhhhcCCC---------------cceeeeeccccchhhh--------------CCCccCCCcchhhhhhh
Confidence            999999999987654322               2446899999995554              44444 67899999999


Q ss_pred             HHHHHHhCCCCCcc
Q 039073          213 VALKVLMGTHPGEL  226 (257)
Q Consensus       213 ~l~ell~G~~Pf~~  226 (257)
                      ++|.++....||..
T Consensus       758 llytivykenpyyn  771 (772)
T KOG1152|consen  758 LLYTIVYKENPYYN  771 (772)
T ss_pred             eeeEEEeccCCCcC
Confidence            99999999999853

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.82  E-value=2.5e-20  Score=166.74  Aligned_cols=155  Identities=32%  Similarity=0.444  Sum_probs=119.8

Q ss_pred             cccccceeeeecCceeEEEEEe--C-C--CCEEEEEEcCccccccHHHHHHHHHHHHHH---------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL--P-D--GKVVALKKLHQSETEDSAFVKSFQNEAHVL---------------------   99 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~--~-~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------------------   99 (257)
                      +.-.+.+.||+|.||.||+|..  . .  .-.||||+.+.....+.  .+.|..|+-++                     
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~--tekflqEa~iMrnfdHphIikLIGv~~e~P~W  466 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDD--TEKFLQEASIMRNFDHPHIIKLIGVCVEQPMW  466 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhh--HHHHHHHHHHHHhCCCcchhheeeeeecccee
Confidence            3345668899999999999932  2 2  33589999987554433  56777776552                     


Q ss_pred             ------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          100 ------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       100 ------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                    +.|++.|++|||+.   +++||||...||++.+...+||+|||+++....
T Consensus       467 ivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed  543 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLED  543 (974)
T ss_pred             EEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhccc
Confidence                                          33899999999999   999999999999999999999999999987654


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ..--...            ...-..-|||              ||.+.-.+++..+|+|=||+.+||++. |..||++..
T Consensus       544 ~~yYkaS------------~~kLPIKWma--------------PESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvk  597 (974)
T KOG4257|consen  544 DAYYKAS------------RGKLPIKWMA--------------PESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVK  597 (974)
T ss_pred             cchhhcc------------ccccceeecC--------------ccccchhcccchhhHHHHHHHHHHHHHhcCCcccccc
Confidence            3211110            0111346899              788888889999999999999999876 999999986


Q ss_pred             ccc
Q 039073          229 SLS  231 (257)
Q Consensus       229 ~~~  231 (257)
                      +.+
T Consensus       598 NsD  600 (974)
T KOG4257|consen  598 NSD  600 (974)
T ss_pred             ccc
Confidence            654

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-20  Score=166.62  Aligned_cols=157  Identities=29%  Similarity=0.424  Sum_probs=123.9

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      +.|.-.--+.....+||-|.||.||.|.++ ....||||.++.+...    +++|+.|+.+                   
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe----veEFLkEAAvMKeikHpNLVqLLGVCT~E  335 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTHE  335 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchh----HHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence            444433444566789999999999999775 4777999999865443    5666666554                   


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.||..|++||...   +++||||...|+|+..+..+|++|||++
T Consensus       336 pPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLs  412 (1157)
T KOG4278|consen  336 PPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLS  412 (1157)
T ss_pred             CCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchh
Confidence                                              455999999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHP  223 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~P  223 (257)
                      +++....-..+..            ..-..-|.|              ||.+....++.++|||+||++|||+.| |-.|
T Consensus       413 RlMtgDTYTAHAG------------AKFPIKWTA--------------PEsLAyNtFSiKSDVWAFGVLLWEIATYGMsP  466 (1157)
T KOG4278|consen  413 RLMTGDTYTAHAG------------AKFPIKWTA--------------PESLAYNTFSIKSDVWAFGVLLWEIATYGMSP  466 (1157)
T ss_pred             hhhcCCceecccC------------ccCcccccC--------------cccccccccccchhhHHHHHHHHHHHhcCCCC
Confidence            9886544322211            111245777              888888889999999999999999998 9999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.++.
T Consensus       467 YPGid  471 (1157)
T KOG4278|consen  467 YPGID  471 (1157)
T ss_pred             CCCcc
Confidence            99863

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.81  E-value=7.7e-19  Score=143.33  Aligned_cols=149  Identities=32%  Similarity=0.475  Sum_probs=112.5

Q ss_pred             cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |.+.+.||.|++|.||++... +++.+++|.+......  ...+.+..|+..                            
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   78 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEY   78 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEec
Confidence            567889999999999999765 4889999999764322  112333333332                            


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..+++.++.+||.+   +++|+|++|.|++++.++.++++|||.+..........
T Consensus        79 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~  155 (225)
T smart00221       79 CEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAAL  155 (225)
T ss_pred             cCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccc
Confidence                                    334799999999999   99999999999999999999999999988765432000


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                  .....++..|++||++.             ....++.++|+|+||++++++++|+.||+.
T Consensus       156 ------------~~~~~~~~~~~~pe~~~-------------~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      156 ------------LKTVKGTPFYLAPEVLL-------------GGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ------------ccceeccCCcCCHhHhc-------------CCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence                        11234667788855442             334457799999999999999999999976

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.80  E-value=6.4e-20  Score=152.65  Aligned_cols=155  Identities=25%  Similarity=0.313  Sum_probs=116.3

Q ss_pred             hccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...+|.-++.+|.|.- .|-.| ..-.++.||+|++...... ....++..+|..+                        
T Consensus        15 v~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n-~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~   92 (369)
T KOG0665|consen   15 VPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQN-QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEE   92 (369)
T ss_pred             eeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCcccc-CccchhhhhhhhhhhhhcccceeeeeeccCccccHHH
Confidence            3557888888888887 55566 3346888999998654221 1112222233222                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +.-|++.|+.+||+.   +|+||||||+||++..++.+|+.|||++....
T Consensus        93 ~~e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~  169 (369)
T KOG0665|consen   93 FQEVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTED  169 (369)
T ss_pred             HHhHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhcccC
Confidence                                          333899999999999   99999999999999999999999999988654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..-.              ......+..|.|              ||++.+..+.+.+||||.||++.||++|+.-|.|-.
T Consensus       170 ~~~~--------------mtpyVvtRyyra--------------pevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d  221 (369)
T KOG0665|consen  170 TDFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKD  221 (369)
T ss_pred             cccc--------------cCchhheeeccC--------------chheeccCCcccchhhhhhhHHHHHhhceEEecCch
Confidence            3311              122456778888              888888889999999999999999999999998754


Q ss_pred             ccc
Q 039073          229 SLS  231 (257)
Q Consensus       229 ~~~  231 (257)
                      .++
T Consensus       222 ~id  224 (369)
T KOG0665|consen  222 HID  224 (369)
T ss_pred             HHH
Confidence            433

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-18  Score=161.94  Aligned_cols=157  Identities=29%  Similarity=0.415  Sum_probs=119.0

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeC----C----CCEEEEEEcCccccccHHHHHHHHHHHHH-------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELP----D----GKVVALKKLHQSETEDSAFVKSFQNEAHV-------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------   98 (257)
                      .|+...++..+.+.||+|.||+|++|...    .    ...||||.++.....  ...+.+..|+.+             
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~--~~~~~~~~El~~m~~~g~H~niv~l  367 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS--SEKKDLMSELNVLKELGKHPNIVNL  367 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc--HHHHHHHHHHHHHHHhcCCcchhhh
Confidence            56666777788889999999999999421    1    456999999865433  223344444333             


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCC
Q 039073           99 -------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDI  123 (257)
Q Consensus        99 -------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dL  123 (257)
                                                                             ++.||+.|++||++.   .++||||
T Consensus       368 lG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDL  444 (609)
T KOG0200|consen  368 LGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDL  444 (609)
T ss_pred             eeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---Cccchhh
Confidence                                                                   345999999999999   9999999


Q ss_pred             CCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccc--cccchhhhHhhhcCCCCchhhhhhhcCCC
Q 039073          124 SSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG--CISYYALWFYFQRHNLMPFHVELAYTMVV  201 (257)
Q Consensus       124 kp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~y~ape~~~~~~~~~~~~pe~~~~~~~  201 (257)
                      ...||++..+..+|++|||+++.......-..            ....|  ...|||              ||++....|
T Consensus       445 AaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~------------~~~~~~LP~kWmA--------------pEsl~~~~f  498 (609)
T KOG0200|consen  445 AARNVLITKNKVIKIADFGLARDHYNKDYYRT------------KSSAGTLPVKWMA--------------PESLFDRVF  498 (609)
T ss_pred             hhhhEEecCCCEEEEccccceeccCCCCceEe------------cCCCCccceeecC--------------HHHhccCcc
Confidence            99999999999999999999986543221110            00111  235999              777777778


Q ss_pred             CCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          202 TEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       202 ~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +.++||||||+++||+.+ |..||.+.
T Consensus       499 t~kSDVWSfGI~L~EifsLG~~PYp~~  525 (609)
T KOG0200|consen  499 TSKSDVWSFGILLWEIFTLGGTPYPGI  525 (609)
T ss_pred             cccchhhHHHHHHHHHhhCCCCCCCCC
Confidence            999999999999999998 99999874

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.77  E-value=5e-19  Score=151.94  Aligned_cols=166  Identities=27%  Similarity=0.367  Sum_probs=118.0

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      +....+.|...++||+|+|+.||++...    .+..||+|.+.......     ....|.+.                  
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~-----ri~~El~~L~~~gG~~ni~~~~~~~r  105 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPS-----RILNELEMLYRLGGSDNIIKLNGCFR  105 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCch-----HHHHHHHHHHHhccchhhhcchhhhc
Confidence            3445778999999999999999999432    46789999997654322     23333333                  


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARL  146 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~  146 (257)
                                                     +.+.++.||.++|..   ||+|||+||.|++.+. .+.-.|.|||++..
T Consensus       106 nnd~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  106 NNDQVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             cCCeeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHH
Confidence                                           344799999999999   9999999999999984 46678999999872


Q ss_pred             cccCC------C------C----------------CCccccc--cCCCcc-cccccccccchhhhHhhhcCCCCchhhhh
Q 039073          147 LHVDS------S------N----------------RPYEWAL--TDTLPQ-VNKIIGCISYYALWFYFQRHNLMPFHVEL  195 (257)
Q Consensus       147 ~~~~~------~------~----------------~~~~~~~--~~~~~~-~~~~~gt~~y~ape~~~~~~~~~~~~pe~  195 (257)
                      .....      .      .                .+.....  .++.+. .....||++|.|||+++....+       
T Consensus       183 ~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Q-------  255 (418)
T KOG1167|consen  183 YDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQ-------  255 (418)
T ss_pred             HHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCc-------
Confidence            21000      0      0                0000000  111111 1234689999998888777655       


Q ss_pred             hhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          196 AYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       196 ~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                            ++++||||.|+++..+++++.||...
T Consensus       256 ------ttaiDiws~GVI~Lslls~~~PFf~a  281 (418)
T KOG1167|consen  256 ------TTAIDIWSAGVILLSLLSRRYPFFKA  281 (418)
T ss_pred             ------CCccceeeccceeehhhccccccccC
Confidence                  77999999999999999999999743

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.77  E-value=1.5e-19  Score=166.09  Aligned_cols=145  Identities=30%  Similarity=0.395  Sum_probs=108.0

Q ss_pred             cccceeeeecCce-eEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYG-SVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g-~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      |...+.+|.|+-| .||+|... |+.||||++-....      .-.++|+..                            
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~~------~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalE  583 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEFF------DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALE  583 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHhH------HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEeh
Confidence            4445678898886 67999774 78999999864321      122233332                            


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CC--CeEEeeccCccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NL--EAFVADFGTARL  146 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~--~~~l~dfg~~~~  146 (257)
                                                 +-.|++.|+++||+.   +|+||||||.||||+.   ++  .++|+|||+++.
T Consensus       584 LC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  584 LCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             HhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence                                       334899999999998   9999999999999976   34  578999999998


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~  225 (257)
                      .......-.          ......||.+|.|||++...+              -+.++||+|+||++|+.++ |.+||.
T Consensus       661 l~~~~sS~~----------r~s~~sGt~GW~APE~L~~~~--------------~~~avDiFslGCvfyYvltgG~HpFG  716 (903)
T KOG1027|consen  661 LAGGKSSFS----------RLSGGSGTSGWQAPEQLREDR--------------KTQAVDIFSLGCVFYYVLTGGSHPFG  716 (903)
T ss_pred             cCCCcchhh----------cccCCCCcccccCHHHHhccc--------------cCcccchhhcCceEEEEecCCccCCC
Confidence            765443211          134567999999966665443              3569999999999999988 699997


Q ss_pred             c
Q 039073          226 L  226 (257)
Q Consensus       226 ~  226 (257)
                      .
T Consensus       717 d  717 (903)
T KOG1027|consen  717 D  717 (903)
T ss_pred             c
Confidence            4

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.75  E-value=1.6e-17  Score=136.64  Aligned_cols=136  Identities=32%  Similarity=0.506  Sum_probs=105.0

Q ss_pred             CceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------------
Q 039073           58 GYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------------   98 (257)
Q Consensus        58 ~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------------   98 (257)
                      +||.||+|... +++.+++|++........  .+.+..|++.                                      
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~   78 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL   78 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHH
Confidence            58999999765 589999999976543221  2334444333                                      


Q ss_pred             -------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCc
Q 039073           99 -------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP  165 (257)
Q Consensus        99 -------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  165 (257)
                                   +..+++.++.+||..   +++|+||+|.||+++.++.++++|||.+........             
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~-------------  142 (244)
T smart00220       79 KKRGRLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGL-------------  142 (244)
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeeccccc-------------
Confidence                         233799999999999   999999999999999999999999999887643321             


Q ss_pred             ccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          166 QVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       166 ~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                       .....++..|++              ||...+..++.++|+||+|++++++++|..||..
T Consensus       143 -~~~~~~~~~~~~--------------pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      143 -LTTFVGTPEYMA--------------PEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             -cccccCCcCCCC--------------HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence             112346778888              5555555678899999999999999999999976

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=2.3e-17  Score=144.13  Aligned_cols=82  Identities=28%  Similarity=0.589  Sum_probs=65.6

Q ss_pred             ccccccceeeeecCceeEEEE-EeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~-~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|.+.++||=|.|++||++ ...+.+.||+|+.+...    .+.+....|+.+                         
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq----hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ----HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh----HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            368999999999999999999 45568889999997543    233444445544                         


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                             +++||+.||.|||..|  ||+|.||||+|||+..
T Consensus       153 hsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCS  223 (590)
T ss_pred             ecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeec
Confidence                                                   3448999999999986  9999999999999954

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.73  E-value=2.8e-17  Score=143.87  Aligned_cols=137  Identities=18%  Similarity=0.193  Sum_probs=98.4

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeC--CCCEEEEEEcCcccc--ccHHHHHHHHHHHHHHH--------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELP--DGKVVALKKLHQSET--EDSAFVKSFQNEAHVLS--------------  100 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vaiK~~~~~~~--~~~~~~~~~~~e~~~l~--------------  100 (257)
                      +.+....++|.+.+.||+|+||+||+|.+.  +++.||||++.....  ......+.+.+|++++.              
T Consensus        11 ~~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~   90 (365)
T PRK09188         11 DQIPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT   90 (365)
T ss_pred             cccccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc
Confidence            344556788999999999999999999653  577789998653211  12223445667766533              


Q ss_pred             ---------------------------HHHHHHHHHHhhCCCCCeEeeCC-CCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          101 ---------------------------TSVAHALSYLHHDCTLSIVHRDI-SSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       101 ---------------------------~~i~~~l~~LH~~~~~~i~H~dL-kp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 .+++++|.|||++   |++|||| ||+||+++.++.++|+|||+++.......
T Consensus        91 ~~~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~  167 (365)
T PRK09188         91 GKDGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGA  167 (365)
T ss_pred             CCcEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECccceecccCcc
Confidence                                       3789999999999   9999999 99999999999999999999987653321


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhh
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYF  183 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~  183 (257)
                      ...     ......+....++..|.|||.+.
T Consensus       168 ~~~-----~~~~~d~~~~~~~~~~~~pe~~~  193 (365)
T PRK09188        168 LYR-----IAAYEDLRHLLKHKRTYAPDALT  193 (365)
T ss_pred             hhh-----hhhhhhhhhhhccCccCCcccCC
Confidence            110     00111123456788888988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=8.5e-18  Score=158.64  Aligned_cols=203  Identities=20%  Similarity=0.210  Sum_probs=136.9

Q ss_pred             CCcCHHHHHhhcc-ccccceeeeecCceeEEEEEeCCCCEEEEEEcCccc--cccHHHHHHHHHH---------------
Q 039073           34 GKISYEDLINATE-EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSE--TEDSAFVKSFQNE---------------   95 (257)
Q Consensus        34 ~~~~~~~~~~~~~-~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~~e---------------   95 (257)
                      +....+.+..... ++...+.||.+.|-+|.+|++..|. |+||++-+..  ..-..+.+.+..+               
T Consensus        10 Qi~~~e~yfsd~~~e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk   88 (1431)
T KOG1240|consen   10 QISPVEVYFSDLSVECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQK   88 (1431)
T ss_pred             ccchHHHHhhcCccceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHH
Confidence            3444555544443 7889999999999999999888787 8899986543  1122222222111               


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           96 ---------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        96 ---------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                       ..-++-|++.|+.-+|..   ||+|+|||.|||||++..++.|+||.
T Consensus        89 ~~~t~kAAylvRqyvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFA  165 (1431)
T KOG1240|consen   89 VLVTDKAAYLVRQYVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFA  165 (1431)
T ss_pred             HHHhhHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhccc
Confidence                                             111444999999999999   99999999999999999999999998


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHh-C
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLM-G  220 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~-G  220 (257)
                      .-+....++..........++.+      .-.+|+|||.+......+.    .....+ .+++.||+|+||++.|+++ |
T Consensus       166 sFKPtYLPeDNPadf~fFFDTSr------RRtCYiAPERFv~~~~~~~----~~q~~~~L~paMDIFS~GCViaELf~Eg  235 (1431)
T KOG1240|consen  166 SFKPTYLPEDNPADFTFFFDTSR------RRTCYIAPERFVSALGKTS----VGQDAPLLTPAMDIFSAGCVIAELFLEG  235 (1431)
T ss_pred             ccCCccCCCCCcccceEEEecCC------ceeeecChHhhhccccccc----cCCcccccChhhhhhhhhHHHHHHHhcC
Confidence            76655544444333333333332      2358999999977553321    122222 6889999999999999977 9


Q ss_pred             CCCCcccccc----cCCCCCcchhhhhhcccCCC
Q 039073          221 THPGELLSSL----SSSSGPKIMLIDVLDQRLSP  250 (257)
Q Consensus       221 ~~Pf~~~~~~----~~~~~~~~~~~~i~~~~l~~  250 (257)
                      ++||...+=.    .....+...+.+|-|+.+++
T Consensus       236 ~PlF~LSQL~aYr~~~~~~~e~~Le~Ied~~~Rn  269 (1431)
T KOG1240|consen  236 RPLFTLSQLLAYRSGNADDPEQLLEKIEDVSLRN  269 (1431)
T ss_pred             CCcccHHHHHhHhccCccCHHHHHHhCcCccHHH
Confidence            9999853311    11333455566666666554

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.72  E-value=7.1e-17  Score=140.30  Aligned_cols=163  Identities=23%  Similarity=0.347  Sum_probs=115.8

Q ss_pred             ccccceeeeecCceeEEEEEeCCC--CEEEEEEcCcccccc------H-HHHHHHHH-----------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELPDG--KVVALKKLHQSETED------S-AFVKSFQN-----------------------   94 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~~~--~~vaiK~~~~~~~~~------~-~~~~~~~~-----------------------   94 (257)
                      +|.+.+.||+|+||.||.+.....  ..+|+|.........      + ........                       
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            899999999999999999976443  478888776532211      0 11111110                       


Q ss_pred             ------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-----CCeEEeeccCcc
Q 039073           95 ------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-----LEAFVADFGTAR  145 (257)
Q Consensus        95 ------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-----~~~~l~dfg~~~  145 (257)
                                              .+-.++.|++.+|.++|+.   |++||||||.|+++...     ..+.+.|||+++
T Consensus        99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence                                    0111566999999999999   99999999999999855     458999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ...........   ..-..+......||..|.+              +.++.+...+++.|+||++.++.++..|..||.
T Consensus       176 ~~~~~~~~~~~---~~~~r~~~~~~rGT~ry~S--------------~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~  238 (322)
T KOG1164|consen  176 RFKYVGDSGGN---LRPPRPQKGLFRGTLRYAS--------------INVHLGIEQGRRDDLESLFYMLLELLKGSLPWE  238 (322)
T ss_pred             cccccCCCCcc---cccCCCCccCCCCcccccc--------------HHHhCCCccCCchhhhhHHHHHHHHhcCCCCCc
Confidence            43211111000   0000000123569999988              888899999999999999999999999999998


Q ss_pred             cccc
Q 039073          226 LLSS  229 (257)
Q Consensus       226 ~~~~  229 (257)
                      +.+.
T Consensus       239 ~~~~  242 (322)
T KOG1164|consen  239 ALEM  242 (322)
T ss_pred             cccc
Confidence            7654

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.71  E-value=8.1e-18  Score=143.69  Aligned_cols=159  Identities=20%  Similarity=0.348  Sum_probs=115.6

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      .++...-+++.+...+-+|.||.||+|-+      .+.+.|.+|.++....  .-++..+..|...              
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS--~iQv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS--QIQVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc--HHHHHHHHHHHHHHhcCcCCCccceeE
Confidence            45555567788888899999999999932      2344567777764321  1123333333222              


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           99 ----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        99 ----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                    ++.|++.|+++||.+   +++|.||...|.+||.
T Consensus       355 V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd  431 (563)
T KOG1024|consen  355 VSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDD  431 (563)
T ss_pred             EEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhcceehh
Confidence                                                          566999999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      .-.+||+|=.+++...+..-. +.          -+..-....||+              +|.+....|+..+|+||||+
T Consensus       432 ~LqVkltDsaLSRDLFP~DYh-cL----------GDnEnRPvkWMs--------------lEal~n~~yssasDvWsfGV  486 (563)
T KOG1024|consen  432 QLQVKLTDSALSRDLFPGDYH-CL----------GDNENRPVKWMS--------------LEALQNSHYSSASDVWSFGV  486 (563)
T ss_pred             heeEEeccchhccccCccccc-cc----------CCCCCCcccccC--------------HHHHhhhhhcchhhhHHHHH
Confidence            999999999888765332110 00          001112457999              77777777899999999999


Q ss_pred             HHHHHHh-CCCCCccc
Q 039073          213 VALKVLM-GTHPGELL  227 (257)
Q Consensus       213 ~l~ell~-G~~Pf~~~  227 (257)
                      ++|||++ |+.|+..+
T Consensus       487 llWELmtlg~~PyaeI  502 (563)
T KOG1024|consen  487 LLWELMTLGKLPYAEI  502 (563)
T ss_pred             HHHHHHhcCCCCcccc
Confidence            9999998 99999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.71  E-value=3.5e-17  Score=157.98  Aligned_cols=114  Identities=14%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec-------------------cCccccccCCCC--
Q 039073           95 EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF-------------------GTARLLHVDSSN--  153 (257)
Q Consensus        95 e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df-------------------g~~~~~~~~~~~--  153 (257)
                      ++..+..||+.||.|||++   +|+||||||+|||++..+.++++||                   |+++........  
T Consensus        81 ~~~~i~~qi~~al~~lH~~---gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~  157 (793)
T PLN00181         81 ECFHVFRQIVEIVNAAHSQ---GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRI  157 (793)
T ss_pred             HHHHHHHHHHHHHHHHHhC---CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccch
Confidence            4555778999999999999   9999999999999976555555554                   444322100000  


Q ss_pred             --CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          154 --RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       154 --~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                        .......+... ......||+.|+|              ||.+.+..++.++|||||||++|||++|.+|+..
T Consensus       158 ~~~~~~~~~~~~~-~~~~~~gt~~Y~A--------------PE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        158 EKLEEVKKQPFPM-KQILAMEMSWYTS--------------PEEDNGSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             hhhhccccCCCcc-cccccCCCcceEC--------------hhhhccCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence              00000000000 0012357888999              6666666789999999999999999999999874

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.71  E-value=4.2e-17  Score=129.03  Aligned_cols=90  Identities=24%  Similarity=0.194  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccc
Q 039073           95 EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI  174 (257)
Q Consensus        95 e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  174 (257)
                      ++..++.|++.||.|||++   +      ||+||+++.++.+++  ||++.......                  ..|+.
T Consensus        18 ~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~------------------~~g~~   68 (176)
T smart00750       18 EIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ------------------SRVDP   68 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc------------------CCCcc
Confidence            4556778999999999998   5      999999999999998  99887553211                  24788


Q ss_pred             cchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       175 ~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .|+|              ||.+.+..++.++|||||||++|||++|+.||...
T Consensus        69 ~y~a--------------PE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~  107 (176)
T smart00750       69 YFMA--------------PEVIQGQSYTEKADIYSLGITLYEALDYELPYNEE  107 (176)
T ss_pred             cccC--------------hHHhcCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            9999              66666666789999999999999999999999754

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.69  E-value=7.9e-18  Score=151.71  Aligned_cols=154  Identities=25%  Similarity=0.409  Sum_probs=120.6

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH-------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA-------------------------   96 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~-------------------------   96 (257)
                      ++-++|+++..+|.|++|.||+++. .++...|+|+++......   .+..+.|+                         
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd---~~~iqqei~~~~dc~h~nivay~gsylr~dklw   88 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD---FSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLW   88 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCcc---ccccccceeeeecCCCcChHHHHhhhhhhcCcE
Confidence            6678999999999999999999954 578999999997543222   12222221                         


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           97 --------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        97 --------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                .-..++.++++.|||+.   +=+|||+|..||++...|.+++.|||.+..+...
T Consensus        89 icMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqitat  165 (829)
T KOG0576|consen   89 ICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITAT  165 (829)
T ss_pred             EEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhhh
Confidence                                      12455788999999999   9999999999999999999999999998866432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ..             +....+||+.|||||+..           +-..+.|...+|+|++|++..|+...++|...
T Consensus       166 i~-------------KrksfiGtpywmapEvaa-----------verkggynqlcdiwa~gitAiel~eLqpplfd  217 (829)
T KOG0576|consen  166 IA-------------KRKSFIGTPYWMAPEVAA-----------VERKGGYNQLCDIWALGITAIELGELQPPLFD  217 (829)
T ss_pred             hh-------------hhhcccCCccccchhHHH-----------HHhcccccccccccccccchhhhhhcCCcccc
Confidence            21             223478999999977742           33455689999999999999999999888653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.68  E-value=1.8e-16  Score=133.72  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=106.7

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ..+.....||.|+++.||.+++. +++.+|+|++...........+.+++|...                          
T Consensus        12 r~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~   91 (288)
T PF14531_consen   12 RTLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLL   91 (288)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEE
T ss_pred             eEEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEE
Confidence            34667889999999999999664 699999999865443322234444444311                          


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEe
Q 039073           99 ----------------------------------------------------------LSTSVAHALSYLHHDCTLSIVH  120 (257)
Q Consensus        99 ----------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H  120 (257)
                                                                                +..|+++.+++||+.   |++|
T Consensus        92 ~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVH  168 (288)
T PF14531_consen   92 RIPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVH  168 (288)
T ss_dssp             EETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEE
T ss_pred             EEcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEe
Confidence                                                                      223788999999999   9999


Q ss_pred             eCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC
Q 039073          121 RDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV  200 (257)
Q Consensus       121 ~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~  200 (257)
                      +||+|+|++++.+|.+.|+||+..........                ....+..|.+||+..+...+.    .  ....
T Consensus       169 gdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~----------------~~~~~~~~~PPe~~~~~~~~~----~--~~~~  226 (288)
T PF14531_consen  169 GDIKPENFLLDQDGGVFLGDFSSLVRAGTRYR----------------CSEFPVAFTPPELESCAGQFG----Q--NNAP  226 (288)
T ss_dssp             ST-SGGGEEE-TTS-EEE--GGGEEETTEEEE----------------GGGS-TTTS-HHHHHHHTSCH----H--SEEE
T ss_pred             cccceeeEEEcCCCCEEEcChHHHeecCceee----------------ccCCCcccCChhhhhhhcccC----c--ccce
Confidence            99999999999999999999986553321110                012235677777665543321    1  2234


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          201 VTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       201 ~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      ++.+.|.|++|+++|.+.+|..||+..+.
T Consensus       227 ~t~~~DaW~LG~~ly~lWC~~lPf~~~~~  255 (288)
T PF14531_consen  227 YTFATDAWQLGITLYSLWCGRLPFGLSSP  255 (288)
T ss_dssp             E-HHHHHHHHHHHHHHHHHSS-STCCCGG
T ss_pred             eeeccCHHHHHHHHHHHHHccCCCCCCCc
Confidence            68899999999999999999999996544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.66  E-value=5.4e-16  Score=127.15  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHH------HHHHHHHH-------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKS------FQNEAHVL-------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~------~~~e~~~l-------------------   99 (257)
                      ..+|...+.+|.|+||.||.++. ++..+|+|.+.+.....+...+.      +.+|+..+                   
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            68899999999999999999866 56689999998665444444333      34554331                   


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      ..+++.++..+|+.   |++|+|++|.|++++.++ ++++|||.....
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liDfg~~~~~  184 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCT  184 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEECCCcccc
Confidence                                            23799999999999   999999999999999888 999999977644

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.63  E-value=1.8e-16  Score=149.38  Aligned_cols=166  Identities=24%  Similarity=0.343  Sum_probs=119.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccc-cH--HHHH-HHH--HHHHHHH------HHHHHHHHHH
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETE-DS--AFVK-SFQ--NEAHVLS------TSVAHALSYL  110 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~-~~--~~~~-~~~--~e~~~l~------~~i~~~l~~L  110 (257)
                      ..++|+.++.+..|++|-||.+.++ +.+.+|+| +.++..- +.  .+.. -|.  .+...++      .+++.+++|+
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~lilRnilt~a~npfvvgDc~tllk~~g~lPvdmvla~Eyl  159 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNLILRNILTFAGNPFVVGDCATLLKNIGPLPVDMVLAVEYL  159 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhhc-ccccchhhhccccccCCcceechhhhhcccCCCCcchhhHHhHhh
Confidence            3678999999999999999999665 67788884 4333211 10  0000 000  0111111      1567899999


Q ss_pred             hhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc-cccCCCcccc-cccccccchhhhHhhhcCCC
Q 039073          111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW-ALTDTLPQVN-KIIGCISYYALWFYFQRHNL  188 (257)
Q Consensus       111 H~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~gt~~y~ape~~~~~~~~  188 (257)
                      |+.   +|+|||+||+|.+|+.-|++|++|||+++..-+....+-... ...++..... ..+||+-|.|          
T Consensus       160 h~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyia----------  226 (1205)
T KOG0606|consen  160 HSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIA----------  226 (1205)
T ss_pred             ccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccC----------
Confidence            999   999999999999999999999999999887644433221111 1112222222 3589999999          


Q ss_pred             CchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          189 MPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       189 ~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                          ||++....|+..+|+|++|+++||.+.|..||++-
T Consensus       227 ----PeVilrqgygkpvdwwamGiIlyeFLVgcvpffGd  261 (1205)
T KOG0606|consen  227 ----PEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  261 (1205)
T ss_pred             ----hhhhhhhccCCCccHHHHHHHHHHHheeeeeccCC
Confidence                88888888999999999999999999999999975

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.62  E-value=8.9e-15  Score=117.14  Aligned_cols=132  Identities=35%  Similarity=0.620  Sum_probs=97.6

Q ss_pred             eeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------------
Q 039073           54 IGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------------   98 (257)
                      ||+|.+|.||++... +++.+++|++.......  ..+.+.+|+..                                  
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l   78 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSL   78 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcH
Confidence            689999999999765 48899999998654321  12233333332                                  


Q ss_pred             ------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccccCCCCCCcccc
Q 039073           99 ------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNRPYEWA  159 (257)
Q Consensus        99 ------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (257)
                                        +..+++.++.+||+.   +++|+||+|.||+++. ++.++++|||.+.........      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~------  149 (215)
T cd00180          79 KDLLKENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSL------  149 (215)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcch------
Confidence                              344899999999999   9999999999999999 899999999998765433210      


Q ss_pred             ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHH
Q 039073          160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       160 ~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~el  217 (257)
                             .....+...|++||              ..... ..+.+.|+|++|++++++
T Consensus       150 -------~~~~~~~~~~~~pe--------------~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         150 -------LKTIVGTPAYMAPE--------------VLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             -------hhcccCCCCccChh--------------HhcccCCCCchhhhHHHHHHHHHH
Confidence                   01133566788854              44433 457899999999999999

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.60  E-value=2.2e-14  Score=121.78  Aligned_cols=155  Identities=32%  Similarity=0.470  Sum_probs=115.2

Q ss_pred             cccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------------   98 (257)
                      |.+.+.||.|+||.||.+...  ..+++|.+.............+.+|...                             
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            778899999999999999776  6789998876544432223344444432                             


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~~  151 (257)
                                                +..+++.++.++|..   +++|||+||+|++++..+ .+++.|||.+.......
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence                                      334799999999999   999999999999999988 69999999988554332


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc---CCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT---MVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~---~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......       .......|+..|++|              |...+   ...+...|+||+|++++++++|..||....
T Consensus       157 ~~~~~~-------~~~~~~~~t~~~~~p--------------e~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         157 STSSIP-------ALPSTSVGTPGYMAP--------------EVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEK  215 (384)
T ss_pred             cccccc-------ccccccccccccCCH--------------HHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            211000       012346789999994              44444   346889999999999999999999977654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.57  E-value=2.4e-14  Score=115.18  Aligned_cols=94  Identities=28%  Similarity=0.354  Sum_probs=71.8

Q ss_pred             ceeeeecCceeEEEEEeCCCCEEEEEEcCccccccH----------------------HH-HHHHHHHHHH---------
Q 039073           51 KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDS----------------------AF-VKSFQNEAHV---------   98 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~----------------------~~-~~~~~~e~~~---------   98 (257)
                      ...||+|++|+||+|...+|+.||||+++.......                      .. ......|...         
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            568999999999999877899999999876521100                      00 0011222221         


Q ss_pred             ----------------------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           99 ----------------------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                              ++.+++.++.++|+ .   |++||||||+||+++ ++.++
T Consensus        82 ~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~~~~~  157 (190)
T cd05145          82 PVPEPILLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-DGKPY  157 (190)
T ss_pred             CCceEEEecCCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-CCCEE
Confidence                                                    34489999999999 8   999999999999999 88999


Q ss_pred             EeeccCccccc
Q 039073          138 VADFGTARLLH  148 (257)
Q Consensus       138 l~dfg~~~~~~  148 (257)
                      ++|||++....
T Consensus       158 liDFG~a~~~~  168 (190)
T cd05145         158 IIDVSQAVELD  168 (190)
T ss_pred             EEEcccceecC
Confidence            99999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.56  E-value=7.7e-15  Score=118.02  Aligned_cols=93  Identities=24%  Similarity=0.285  Sum_probs=69.5

Q ss_pred             ceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHH----------------------H-HHHHHHHHHH---------
Q 039073           51 KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSA----------------------F-VKSFQNEAHV---------   98 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~----------------------~-~~~~~~e~~~---------   98 (257)
                      ...||+|++|.||+|...+|+.||||+++........                      . ......|...         
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4679999999999998778999999999764321100                      0 0011123222         


Q ss_pred             ----------------------------------------HHHHHHHHHHHH-hhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           99 ----------------------------------------LSTSVAHALSYL-HHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~L-H~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                              ++.|++.++.++ |+.   +++||||||+||+++ ++.++
T Consensus        82 ~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~-~~~v~  157 (190)
T cd05147          82 PCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYH-DGKLY  157 (190)
T ss_pred             CCCcEEEecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEE-CCcEE
Confidence                                                    344799999999 677   999999999999998 47899


Q ss_pred             EeeccCcccc
Q 039073          138 VADFGTARLL  147 (257)
Q Consensus       138 l~dfg~~~~~  147 (257)
                      |+|||++...
T Consensus       158 LiDFG~a~~~  167 (190)
T cd05147         158 IIDVSQSVEH  167 (190)
T ss_pred             EEEccccccC
Confidence            9999998744

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=3.2e-14  Score=135.94  Aligned_cols=157  Identities=23%  Similarity=0.331  Sum_probs=116.7

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCcccccc----HHHHHHHHHHH------------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETED----SAFVKSFQNEA------------------   96 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~~e~------------------   96 (257)
                      .+.....+.|.+.+.+|+|+||+||+|...+|+.||+|+-++...++    .+...+++.++                  
T Consensus       691 ~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~  770 (974)
T KOG1166|consen  691 TEFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASV  770 (974)
T ss_pred             ceeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcce
Confidence            34555678899999999999999999977779999999998876543    22222222100                  


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-------CCCeEEeeccC
Q 039073           97 --------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-------NLEAFVADFGT  143 (257)
Q Consensus        97 --------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-------~~~~~l~dfg~  143 (257)
                                                -.+..|++..++.||.+   +|||+||||+|++|..       ..-++|+|||-
T Consensus       771 lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~  847 (974)
T KOG1166|consen  771 LVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGR  847 (974)
T ss_pred             eeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEeccc
Confidence                                      01445899999999999   9999999999999952       23479999998


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.-+..-.....           .....+|-.+-+              +|+..|.+++++.|.|.+..+++-|+.|+.-
T Consensus       848 siDm~lfp~~~~-----------F~~~~~td~f~C--------------~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  848 SIDMKLFPDGTK-----------FKAVWHTDLFDC--------------IEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             ceeeeEcCCCcE-----------Eeeeeccccchh--------------HHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            876543222111           122334555555              8899999999999999999999999999743

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.47  E-value=9.2e-15  Score=131.68  Aligned_cols=89  Identities=31%  Similarity=0.346  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhH
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWF  181 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~  181 (257)
                      .++-+++.+|..   ++++||+|++||+++.+|++++.|||.++..-...                 ..+||.-|||   
T Consensus       105 elaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~-----------------~~cgt~eymA---  161 (612)
T KOG0603|consen  105 ELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK-----------------IACGTYEYRA---  161 (612)
T ss_pred             HHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhh-----------------hcccchhhhh---
Confidence            577889999988   99999999999999999999999999988653222                 2378999999   


Q ss_pred             hhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          182 YFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       182 ~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                 ||++.  .....+|.||||++.+||++|..||..
T Consensus       162 -----------pEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  162 -----------PEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             -----------hHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence                       56555  347899999999999999999999987

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.45  E-value=6.4e-13  Score=107.22  Aligned_cols=159  Identities=13%  Similarity=0.029  Sum_probs=99.2

Q ss_pred             ccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHH-HHHHHHHHHHHH---------------------------
Q 039073           49 HIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-VKSFQNEAHVLS---------------------------  100 (257)
Q Consensus        49 ~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~~~e~~~l~---------------------------  100 (257)
                      .+...|+.|+||+|+.+.. .+.+++.+.+.......... ...+.+|++++.                           
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~   83 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGA   83 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCc
Confidence            4667899999999998866 57778877776543321111 123556666533                           


Q ss_pred             --------------HHHHHHHHHHhhCCCCCeEeeCC-CCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCc
Q 039073          101 --------------TSVAHALSYLHHDCTLSIVHRDI-SSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP  165 (257)
Q Consensus       101 --------------~~i~~~l~~LH~~~~~~i~H~dL-kp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  165 (257)
                                    .|++.++.++|++   |++|||| ||+||+++.++.++|+|||++.......... ......+..+
T Consensus        84 ~L~~~~~~~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~-r~L~~rDl~~  159 (218)
T PRK12274         84 AMYQRPPRGDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWM-RLLAREDLRH  159 (218)
T ss_pred             cHHhhhhhhhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHH-HHHHHHHHHH
Confidence                          3788999999999   9999999 7999999999999999999998543221100 0000000000


Q ss_pred             cc-ccccccccchhhhHhhhcCCCCchhhhhhhcCCCC-CccchhhHHHHHHHHHhCCCCCc
Q 039073          166 QV-NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVT-EKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       166 ~~-~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~-~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .. .....++.|+.|+...           .+.  ..+ ...+.++.|.-+|.++|+..|+-
T Consensus       160 llk~~~~y~~~~l~~~~~~-----------~l~--~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        160 LLKHKRMYCPAALTPVERR-----------VLK--RTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             HHHHHHhcCCCCCCHHHHh-----------hhc--cchhHHHHHHHhcchHHHHHhccCCcc
Confidence            00 0011234444432211           111  123 34566699999999999888764

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=5e-14  Score=131.04  Aligned_cols=109  Identities=23%  Similarity=0.391  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccc
Q 039073           95 EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI  174 (257)
Q Consensus        95 e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  174 (257)
                      |+..+.+|+..|+.|||++   |+.|||+|++|++++.++.++++|||.+..........         .......+|+.
T Consensus       421 e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~---------~~~~~g~~gS~  488 (601)
T KOG0590|consen  421 EADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKN---------IHESSGIVGSD  488 (601)
T ss_pred             hhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeeccCcchh---------hhhhcCcccCC
Confidence            4555677999999999999   99999999999999999999999999988775443321         11235678999


Q ss_pred             cchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       175 ~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .|+|||++....+.             .+.+||||.|+++..|.+|+.||....
T Consensus       489 pY~apE~~~~~~yd-------------pr~vDiwS~~ii~~~m~~~~~~Wk~a~  529 (601)
T KOG0590|consen  489 PYLAPEVLTGKEYD-------------PRAVDVWSCGIIYICMILGRFPWKVAK  529 (601)
T ss_pred             cCcCcccccccccC-------------cchhhhhhccceEEEEecCCCcccccc
Confidence            99996555444433             468999999999999999999998654

>smart00090 RIO RIO-like kinase

Probab=99.43  E-value=8.9e-13  Score=109.61  Aligned_cols=107  Identities=25%  Similarity=0.249  Sum_probs=80.2

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEE--eCCCCEEEEEEcCcccccc--------------------HH-HHHHHHH
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAE--LPDGKVVALKKLHQSETED--------------------SA-FVKSFQN   94 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~--~~~~~~vaiK~~~~~~~~~--------------------~~-~~~~~~~   94 (257)
                      +..+....-.|.+.+.||+|++|.||+|.  ..+|+.||+|+++......                    .+ ....+..
T Consensus        20 ~~~~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (237)
T smart00090       20 LYSLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEK   99 (237)
T ss_pred             HHHHHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHH
Confidence            34455555578999999999999999997  5689999999987542110                    00 0011222


Q ss_pred             HHHH-------------------------------------------------HHHHHHHHHHHHhhCCCCC-eEeeCCC
Q 039073           95 EAHV-------------------------------------------------LSTSVAHALSYLHHDCTLS-IVHRDIS  124 (257)
Q Consensus        95 e~~~-------------------------------------------------l~~~i~~~l~~LH~~~~~~-i~H~dLk  124 (257)
                      |...                                                 ++.|++.++.+||++   + ++|+|||
T Consensus       100 E~~~L~~L~~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dik  176 (237)
T smart00090      100 EFRNLQRLYEAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLS  176 (237)
T ss_pred             HHHHHHHHHhcCCCCCeeeEecCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCC
Confidence            3222                                                 445899999999999   9 9999999


Q ss_pred             CCCeEEcCCCCeEEeeccCccccc
Q 039073          125 SNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       125 p~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      |+||+++ ++.++++|||.+....
T Consensus       177 p~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      177 EYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             hhhEEEE-CCCEEEEEChhhhccC
Confidence            9999999 8889999999987543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.42  E-value=1.8e-12  Score=104.87  Aligned_cols=107  Identities=24%  Similarity=0.275  Sum_probs=79.3

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccH------HH-------------HHHHHHHH---
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDS------AF-------------VKSFQNEA---   96 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~------~~-------------~~~~~~e~---   96 (257)
                      +++......|.+.+.||+|+||.||++...+|+.||||++........      +.             ......|.   
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            345555555888999999999999999887899999998654320000      00             00111111   


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCe
Q 039073           97 ----------------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA  136 (257)
Q Consensus        97 ----------------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~  136 (257)
                                                              ..++.+++.++.++|+.   +++|+||+|+||+++.++.+
T Consensus        88 ~~l~~~~i~v~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nill~~~~~~  164 (198)
T cd05144          88 KALYEEGFPVPKPIDWNRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKH---GIIHGDLSEFNILVDDDEKI  164 (198)
T ss_pred             HHHHHcCCCCCceeecCCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHC---CCCcCCCCcccEEEcCCCcE
Confidence                                                    12455899999999998   99999999999999999999


Q ss_pred             EEeeccCccccc
Q 039073          137 FVADFGTARLLH  148 (257)
Q Consensus       137 ~l~dfg~~~~~~  148 (257)
                      +|+|||.+....
T Consensus       165 ~liDfg~~~~~~  176 (198)
T cd05144         165 YIIDWPQMVSTD  176 (198)
T ss_pred             EEEECCccccCC
Confidence            999999986553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.37  E-value=2.7e-12  Score=102.52  Aligned_cols=94  Identities=27%  Similarity=0.311  Sum_probs=71.8

Q ss_pred             ceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHH-------------------------H--------------
Q 039073           51 KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK-------------------------S--------------   91 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~-------------------------~--------------   91 (257)
                      .+.||+|+||.||+|...+++.||||++............                         +              
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            5679999999999998778999999988653211100000                         0              


Q ss_pred             ----------------------------HH--HHHHHHHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           92 ----------------------------FQ--NEAHVLSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        92 ----------------------------~~--~e~~~l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                  ..  .+...++.+++.++.++|. .   +++|+||+|+||+++ ++.++++|
T Consensus        82 ~~~~~~~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~liD  157 (187)
T cd05119          82 PKPIDLNRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVYIID  157 (187)
T ss_pred             CceEecCCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEEEEE
Confidence                                        00  2234466689999999998 7   999999999999999 88999999


Q ss_pred             ccCccccc
Q 039073          141 FGTARLLH  148 (257)
Q Consensus       141 fg~~~~~~  148 (257)
                      ||.+....
T Consensus       158 fg~a~~~~  165 (187)
T cd05119         158 VPQAVEID  165 (187)
T ss_pred             Cccccccc
Confidence            99987553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=9.5e-13  Score=116.73  Aligned_cols=98  Identities=23%  Similarity=0.417  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhH
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWF  181 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~  181 (257)
                      |++.++.|   +   +.+|+|+||.||....+..++|+|||+........+..+.       ........||..||+   
T Consensus       367 q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~-------~a~~t~~~gt~~Yms---  430 (516)
T KOG1033|consen  367 QIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPA-------AASHTQQVGTLLYMS---  430 (516)
T ss_pred             hhccchhh---c---cchhhhccccccccccchhhhhhhhhheeecccCCcccch-------hhhhhhcccccccCC---
Confidence            56667777   4   8999999999999999999999999998766543311110       111234679999999   


Q ss_pred             hhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          182 YFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       182 ~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                                 ||.+.+..|+.++||||||++++|++. -..+|+.
T Consensus       431 -----------PEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er  465 (516)
T KOG1033|consen  431 -----------PEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER  465 (516)
T ss_pred             -----------HHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH
Confidence                       777888889999999999999999998 5666653

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.16  E-value=3.3e-10  Score=92.22  Aligned_cols=91  Identities=22%  Similarity=0.381  Sum_probs=67.6

Q ss_pred             eeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHH-----HHHHHHHHHH----------------------------
Q 039073           52 YCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-----VKSFQNEAHV----------------------------   98 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~-----~~~~~~e~~~----------------------------   98 (257)
                      +.||+|++|.||+|.. +|..+++|+...........     ...+.+|+..                            
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999977 67778999765432211110     1122333322                            


Q ss_pred             -------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                         ++.+++.++.++|+.   +++|+|++|.||+++ ++.++++|||.+...
T Consensus        81 ~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         81 IEGEPLKDLINSNGMEELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             eCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence                               344788999999999   999999999999999 788999999988753

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.15  E-value=3.9e-10  Score=90.98  Aligned_cols=89  Identities=22%  Similarity=0.392  Sum_probs=66.5

Q ss_pred             eeecCceeEEEEEeCCCCEEEEEEcCccccccHH-----HHHHHHHHHHH------------------------------
Q 039073           54 IGTGGYGSVYKAELPDGKVVALKKLHQSETEDSA-----FVKSFQNEAHV------------------------------   98 (257)
Q Consensus        54 lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~-----~~~~~~~e~~~------------------------------   98 (257)
                      ||+|++|.||+|.. +|..+++|...........     ....+.+|.+.                              
T Consensus         2 ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~   80 (199)
T TIGR03724         2 IAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIE   80 (199)
T ss_pred             CCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC
Confidence            79999999999985 5678999986543211110     11222233322                              


Q ss_pred             --------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 --------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 --------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                    +..+++.++.++|+.   +++|+|++|.|++++ ++.+++.|||.+...
T Consensus        81 g~~l~~~~~~~~~~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        81 GKPLKDVIEEGNDELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CccHHHHHhhcHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence                          455789999999999   999999999999999 789999999988754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.13  E-value=1.9e-10  Score=106.72  Aligned_cols=106  Identities=19%  Similarity=0.288  Sum_probs=72.8

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCcccc-----ccHHHHHHHHHHHHH--------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSET-----EDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~--------------   98 (257)
                      +.........|...+.||+|+||.||++...... +++|+......     ......+.+.+|++.              
T Consensus       325 ~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~  403 (535)
T PRK09605        325 WIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVI  403 (535)
T ss_pred             eccccccccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEE
Confidence            4444444556677899999999999999765433 33333221111     111112334444433              


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                   ++.+++.++.+||+.   +++|||+||+||++ .++.++++|||+++...
T Consensus       404 ~~~~~~~~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        404 YDVDPEEKTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             EEEeCCCCEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence                                         345899999999999   99999999999999 57789999999988653

>PRK10345 hypothetical protein; Provisional

Probab=99.10  E-value=4.9e-10  Score=91.35  Aligned_cols=42  Identities=26%  Similarity=0.474  Sum_probs=33.7

Q ss_pred             HHHHHH-HHHhhCCCCCeEeeCCCCCCeEEcC----CCCeEEee-ccCccc
Q 039073          102 SVAHAL-SYLHHDCTLSIVHRDISSNNILLDS----NLEAFVAD-FGTARL  146 (257)
Q Consensus       102 ~i~~~l-~~LH~~~~~~i~H~dLkp~nill~~----~~~~~l~d-fg~~~~  146 (257)
                      +++.++ .|||++   +|+||||||+||+++.    ++.++|+| ||....
T Consensus       112 ~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        112 QLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             HHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            556566 899999   9999999999999974    33799999 555443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.06  E-value=2.6e-10  Score=98.49  Aligned_cols=113  Identities=24%  Similarity=0.282  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc--CCCC--eEEeeccCccccccCCCCCCccccccCCCccccccc
Q 039073           96 AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD--SNLE--AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII  171 (257)
Q Consensus        96 ~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~--~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (257)
                      ..++..|+++|+.+||.+   |+.|||+|.+||++.  .++.  +.++|||.+-.-..+      .+..++....+ ...
T Consensus       343 ~~~~laQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~h------Glqlpy~S~~V-d~G  412 (598)
T KOG4158|consen  343 GRVILAQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNH------GLQLPYESDEV-DLG  412 (598)
T ss_pred             HHHHHHHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeecccc------ccccccccccc-cCC
Confidence            345666999999999999   999999999999994  4443  578999987543322      22333333322 245


Q ss_pred             ccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       172 gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      |...-||||.....++     |.....   =.++|.|+.|.+.||++....||..
T Consensus       413 GNa~lmAPEi~ta~PG-----p~avvn---y~kAD~WA~GalaYEIfg~~NPFY~  459 (598)
T KOG4158|consen  413 GNAKLMAPEIATAVPG-----PNAVVN---YEKADTWAAGALAYEIFGRSNPFYK  459 (598)
T ss_pred             CcceecchhhhhcCCC-----Cceeec---cchhhhhhhhhhHHHHhccCCcccc
Confidence            7778899887655543     111111   2589999999999999999999986

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.95  E-value=8.9e-09  Score=78.24  Aligned_cols=96  Identities=22%  Similarity=0.170  Sum_probs=69.9

Q ss_pred             cceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHH------HHHHH-----------------------------
Q 039073           50 IKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQN-----------------------------   94 (257)
Q Consensus        50 ~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~------~~~~~-----------------------------   94 (257)
                      +.+.||.|.++.||++...+ ..+++|....... .....      +.+..                             
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            45789999999999998754 6789999876532 11111      11100                             


Q ss_pred             -------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           95 -------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        95 -------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                             ....+..++++++..+|.....+++|+|++|.|++++..+.+++.|||.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          80 LDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence                   01123447899999999864457999999999999999889999999987643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.94  E-value=6.2e-09  Score=94.07  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=35.4

Q ss_pred             HHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       106 ~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      .+..+|..   |++|+|++|.||+++.++.+++.|||++....
T Consensus       269 ~l~ql~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       269 FLNQVLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHHHhC---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            35667887   99999999999999999999999999987664

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.94  E-value=6.4e-09  Score=86.62  Aligned_cols=44  Identities=25%  Similarity=0.528  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      +++.++.+||+.   ||+|+||||.||+++.++.++++|||.+....
T Consensus       150 ~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        150 AIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             HHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            689999999999   99999999999999988899999999887643

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.91  E-value=1.3e-09  Score=89.92  Aligned_cols=152  Identities=14%  Similarity=0.207  Sum_probs=98.8

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHH----------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH----------------------------   97 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~----------------------------   97 (257)
                      .+..+..+|.+...|+.|+|++.. .-++.|++...... ......|..|.-                            
T Consensus       190 ~~lnl~tkl~e~hsgelwrgrwqg-ndivakil~vr~~t-~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq  267 (448)
T KOG0195|consen  190 SSLNLITKLAESHSGELWRGRWQG-NDIVAKILNVREVT-ARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQ  267 (448)
T ss_pred             hhhhhhhhhccCCCcccccccccC-cchhhhhhhhhhcc-hhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeee
Confidence            345677889999999999998864 44566777543221 112233443321                            


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++.+++.|++|||+. .+-|..-.|...+++||.+-+.+|+ .+-.++..+.. 
T Consensus       268 ~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltaris-mad~kfsfqe~-  344 (448)
T KOG0195|consen  268 YMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARIS-MADTKFSFQEV-  344 (448)
T ss_pred             eccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhhee-cccceeeeecc-
Confidence                                     1445799999999987 4456666789999999998777653 22122111111 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                                      ...-++.|++||.+...       ||..    --+.+|+|||.+++||+.|...||...+.
T Consensus       345 ----------------gr~y~pawmspealqrk-------ped~----n~raadmwsfaillwel~trevpfadlsp  394 (448)
T KOG0195|consen  345 ----------------GRAYSPAWMSPEALQRK-------PEDL----NIRAADMWSFAILLWELNTREVPFADLSP  394 (448)
T ss_pred             ----------------ccccCcccCCHHHHhcC-------chhc----chhhhhHHHHHHHHHHhhccccccccCCc
Confidence                            12236789996655333       2221    13589999999999999999999987654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=4.4e-10  Score=104.85  Aligned_cols=104  Identities=30%  Similarity=0.417  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHh-hCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCcccccc-CCCCCCccccccCCCcccccccc-cc
Q 039073           99 LSTSVAHALSYLH-HDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHV-DSSNRPYEWALTDTLPQVNKIIG-CI  174 (257)
Q Consensus        99 l~~~i~~~l~~LH-~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-t~  174 (257)
                      ...|+..++.|+| +.   ++.|+|++|+|.+++..+ .++++|||++..... .....           .....+| ++
T Consensus       128 ~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~-----------~~~~~~g~s~  193 (601)
T KOG0590|consen  128 YLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAER-----------SLKDRCGSSP  193 (601)
T ss_pred             hhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhccccccCCcce-----------eeecccCCCC
Confidence            3448999999999 87   999999999999999999 999999999987765 22211           1244567 89


Q ss_pred             cchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       175 ~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      .|.|||.+.+..             ......|+||+|+++..+++|..|++....
T Consensus       194 ~y~a~E~~~~~~-------------~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~  235 (601)
T KOG0590|consen  194 PYGAPEHLSGKA-------------YRGPSVDVWSLGIVLSAMLTGELPWDFPSR  235 (601)
T ss_pred             CCCCcccccchh-------------hcCCCcccccccccccccccCCCCcccccc
Confidence            999965544321             236799999999999999999999986543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.81  E-value=4.4e-09  Score=94.72  Aligned_cols=111  Identities=24%  Similarity=0.369  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      +.++++.|++|+|+. +. ..|+.|+..|.++|..+.+|++|||+............           .....-...|.|
T Consensus        53 ~~rdi~~Gl~ylh~s-~i-~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~-----------~~~~~~~~lw~a  119 (484)
T KOG1023|consen   53 FIRDISKGLAYLHNS-PI-GYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEA-----------HHPIRKALLWTA  119 (484)
T ss_pred             HHHHHHHHHHHHhcC-cc-eeeeeeccccceeeeeEEEEechhhhcccccccccccc-----------cchhHHHHhccC
Confidence            345789999999987 22 29999999999999999999999999876642000000           001122446788


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                      ||++.......       .....+.+.|+||||++++|+++.+.||+....
T Consensus       120 Pellr~~~~~~-------~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~  163 (484)
T KOG1023|consen  120 PELLRGALSQS-------LESALTQKGDIYSFGIIMYEILFRSGPFDLRNL  163 (484)
T ss_pred             HHHhccccccc-------ccccccccCCeehHHHHHHHHHhccCccccccc
Confidence            77776543221       001236789999999999999999999997543

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.74  E-value=5.3e-08  Score=89.57  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             ccccccceeeeecCceeEEEEEeCC-CCEEEEEEcCcc
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQS   81 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vaiK~~~~~   81 (257)
                      ..+|+. +.||.|++|+||+|..++ |+.||||+.++.
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            456776 799999999999998876 999999999865

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.58  E-value=5.2e-07  Score=70.53  Aligned_cols=90  Identities=22%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             ceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------------
Q 039073           51 KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------------   98 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------------   98 (257)
                      .+.++.|.++.||+++.. +..|++|..........    .+..|...                                
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~----~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~   77 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLI----NRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSE   77 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCccccc----CHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCc
Confidence            357889999999999875 67799998765431111    11122211                                


Q ss_pred             ----------HHHHHHHHHHHHhhCC--CCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 ----------LSTSVAHALSYLHHDC--TLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 ----------l~~~i~~~l~~LH~~~--~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                ...+++.+++.||...  ..+++|+|++|.||+++ ++.+++.||+.+..
T Consensus        78 l~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          78 LLTEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cccccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence                      2347999999999882  22369999999999999 66799999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.31  E-value=2.1e-07  Score=85.80  Aligned_cols=167  Identities=17%  Similarity=0.239  Sum_probs=101.4

Q ss_pred             HHHhhccccccceeeeecCce---eEEEEEeCC---C---CEEEEEEcCccccccHHHH--HHHHHHHH---HHHHHHHH
Q 039073           40 DLINATEEFHIKYCIGTGGYG---SVYKAELPD---G---KVVALKKLHQSETEDSAFV--KSFQNEAH---VLSTSVAH  105 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g---~V~~~~~~~---~---~~vaiK~~~~~~~~~~~~~--~~~~~e~~---~l~~~i~~  105 (257)
                      +......+|+..+.+|..+-|   ++|-++.++   +   ..+++-.+++......+.+  ..+-.+.+   .=..+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~g~g~~~~ly~~~~~~sk~~~~~~s~~~~~ld~~~~~~~~lr~~~~vs~aTe~~f~nl~~v~d  110 (700)
T KOG2137|consen   31 PGPKESQSYRSLNQVGSAGPGDAWKLYAGKKSGSKAPTLKKSAVVWMLDKRASSLQQLRGLDGVSKATEDGFANLGNVAD  110 (700)
T ss_pred             CCcccccccccccceeecCCCchhhhhhhhccCccCccccceeeeeecChhhhHHHHHhcccchhhcccHhhhhhhcccc
Confidence            334556778888888876554   455554322   2   2233444443332222211  11111111   11125678


Q ss_pred             HHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCccc-ccccccccchhhhHhhh
Q 039073          106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQV-NKIIGCISYYALWFYFQ  184 (257)
Q Consensus       106 ~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gt~~y~ape~~~~  184 (257)
                      |+.|+|.+  .+++|+++.|++|.++..+.+|++.|+++.....+..     +.+....+.+ ....-...|.|      
T Consensus       111 gl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~-----~p~~~yd~~lp~~~~~~~~f~a------  177 (700)
T KOG2137|consen  111 GLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE-----YPFSEYDPPLPLLLQPHLNFLA------  177 (700)
T ss_pred             hhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCc-----cccccCCCCCChhhccCccccc------
Confidence            99999986  4999999999999999999999999998776544322     1122111111 11223456777      


Q ss_pred             cCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH-hCCCCCccc
Q 039073          185 RHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGTHPGELL  227 (257)
Q Consensus       185 ~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell-~G~~Pf~~~  227 (257)
                              ||.+.....+..+|++|+|+++|-+. .|+.-+...
T Consensus       178 --------pE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~  213 (700)
T KOG2137|consen  178 --------PEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAAN  213 (700)
T ss_pred             --------chhhccccccccccceeeeeEEEEEecCCcchhhcc
Confidence                    66666666688999999999999988 466555543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.25  E-value=1e-05  Score=65.11  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=35.7

Q ss_pred             HHHHHHHHH-hhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          102 SVAHALSYL-HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       102 ~i~~~l~~L-H~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      +++.++..| |..   +++|+||++.||+++ ++.+.++|||.+...
T Consensus       132 ~i~~~l~~l~H~~---glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         132 QVLSMMKQLYKEC---NLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             HHHHHHHHHHHhC---CeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            677788877 777   999999999999997 467999999977644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.22  E-value=2.3e-05  Score=61.88  Aligned_cols=99  Identities=23%  Similarity=0.390  Sum_probs=68.8

Q ss_pred             cceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHH-----HHHHHHHHHHH-------------------------
Q 039073           50 IKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-----VKSFQNEAHVL-------------------------   99 (257)
Q Consensus        50 ~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~-----~~~~~~e~~~l-------------------------   99 (257)
                      ....+-+|+-+.|+++... |+.+.||.--.-....+..     .+...+|++.+                         
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            5677889999999999774 6666666442222221111     12334555543                         


Q ss_pred             -----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccCcccc
Q 039073          100 -----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGTARLL  147 (257)
Q Consensus       100 -----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~~~~~  147 (257)
                                                   ++.|.+.+.-||..   +++|+||..+||++..++.   +.+.|||++...
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchhcc
Confidence                                         33688899999999   9999999999999976653   579999998876


Q ss_pred             ccCCC
Q 039073          148 HVDSS  152 (257)
Q Consensus       148 ~~~~~  152 (257)
                      ..++.
T Consensus       167 ~~~ED  171 (229)
T KOG3087|consen  167 RLPED  171 (229)
T ss_pred             cCccc
Confidence            55443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=1.8e-06  Score=78.26  Aligned_cols=162  Identities=22%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             cccCCCCcCHHH-HHhhccccccceeeeecCceeEEEEEe--CCCCEEEEEEcCccccccHHHHHHH---HHH-------
Q 039073           29 VWNYDGKISYED-LINATEEFHIKYCIGTGGYGSVYKAEL--PDGKVVALKKLHQSETEDSAFVKSF---QNE-------   95 (257)
Q Consensus        29 ~~~~~~~~~~~~-~~~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~---~~e-------   95 (257)
                      +.+....+.-.+ ......+|.+...||.|.|+.++....  .++..|++|.+.+......+.+..+   ..|       
T Consensus       247 ~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~  326 (524)
T KOG0601|consen  247 DLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHL  326 (524)
T ss_pred             ccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhccc
Confidence            333344444445 566678899999999999999999843  4688999998876543332221111   011       


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-
Q 039073           96 -----------------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-  133 (257)
Q Consensus        96 -----------------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-  133 (257)
                                                               ...+..|++.++.++|+.   .++|+|++|.||++.++ 
T Consensus       327 ~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~  403 (524)
T KOG0601|consen  327 PSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDG  403 (524)
T ss_pred             ccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccch
Confidence                                                     111344899999999988   99999999999999886 


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccc-hhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY-YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y-~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      +..+++|||....+.......               ......| .+              +...+...+..++|++|||.
T Consensus       404 ~~~~~~~~~~~t~~~~~~~~~---------------~~~~r~~p~~--------------~~~~e~~~~~~~~~~~sl~~  454 (524)
T KOG0601|consen  404 FFSKLGDFGCWTRLAFSSGVF---------------HHIDRLYPIA--------------EILLEDYPHLSKADIFSLGL  454 (524)
T ss_pred             hhhhccccccccccceecccc---------------cccccccccc--------------hhhccccccccccccccccc
Confidence            788899998876432111100               1112222 12              34445555688999999999


Q ss_pred             HHHHHHhCCC
Q 039073          213 VALKVLMGTH  222 (257)
Q Consensus       213 ~l~ell~G~~  222 (257)
                      .+.+..+|..
T Consensus       455 ~~~e~~~~~~  464 (524)
T KOG0601|consen  455 SVDEAITGSP  464 (524)
T ss_pred             cccccccCcc
Confidence            9999988764

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.09  E-value=4.3e-05  Score=60.38  Aligned_cols=91  Identities=23%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             eeeecCceeEEEEEeCCCCEEEEEEcCccccccHHH-----HHHHHHHHHHHHH--------------------------
Q 039073           53 CIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-----VKSFQNEAHVLST--------------------------  101 (257)
Q Consensus        53 ~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~-----~~~~~~e~~~l~~--------------------------  101 (257)
                      .+++|+-+.++.+... |..+++|.-.+-.....+.     ...-.+|+++++.                          
T Consensus         3 ~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           3 LIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            4778999999999664 3345555443322222222     1233456665433                          


Q ss_pred             ------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 ------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                        .+..-+.-||..   ||+|+||.+.|+++...+ +.++|||++....
T Consensus        82 ~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~  142 (204)
T COG3642          82 EGELLKDALEEARPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEFSD  142 (204)
T ss_pred             CChhHHHHHHhcchHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcccccc
Confidence                              477778899999   999999999999998765 8999999988654

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.03  E-value=3.4e-05  Score=70.82  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=29.8

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      |++|.|..|.|++++.++.+.+.|||+.....
T Consensus       285 gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         285 GFFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             CccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            99999999999999999999999999987664

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.01  E-value=5.5e-05  Score=69.98  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      -..||+.||.|||+.+  +++|+++.-..++++..|..+|++|..+............           ....  -.|..
T Consensus       109 Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~-----------~~~~--~s~~~  173 (690)
T KOG1243|consen  109 GLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKS-----------LYLI--ESFDD  173 (690)
T ss_pred             HHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCccccc-----------chhh--hcccC
Confidence            3458999999998654  9999999999999999999999999876543221110000           0000  01112


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccccccCC
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSS  233 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~~~~~  233 (257)
                                    |+.+...  +...|.|-|||+++|++.|  ++....+.+..
T Consensus       174 --------------P~~~~~s--~~s~D~~~Lg~li~el~ng--~~~~~~~~~~~  210 (690)
T KOG1243|consen  174 --------------PEEIDPS--EWSIDSWGLGCLIEELFNG--SLLTKTDLSNT  210 (690)
T ss_pred             --------------hhhcCcc--ccchhhhhHHHHHHHHhCc--ccCcchhhhcc
Confidence                          2222111  1356999999999999999  44444444443

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.94  E-value=4.8e-05  Score=67.17  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      .++.++.+.+-||++   |-.-+|+.++|+|+..++.+.|.|-..-..-. ...             ......|...|.+
T Consensus       122 vaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~-ng~-------------~~~cpVg~~eftP  184 (637)
T COG4248         122 VARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDSDSFQINA-NGT-------------LHLCPVGVSEFTP  184 (637)
T ss_pred             HHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcccceeecc-CCc-------------eEecccCccccCC
Confidence            466899999999999   99999999999999999999987642211111 000             0123457778888


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccccccCCCCCcc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLSSLSSSSGPKI  238 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~~~~~~~~~~~  238 (257)
                      ||+-.         -.+..+..-+...|.+.+|+++++++. |++||.++.-.....++.+
T Consensus       185 PElQ~---------~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E  236 (637)
T COG4248         185 PELQT---------LPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLE  236 (637)
T ss_pred             HHHhc---------cccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcch
Confidence            77643         112233345778999999999999987 5999999877666655544

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.88  E-value=1.5e-05  Score=76.88  Aligned_cols=109  Identities=22%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC---CCC-------CCccccccCC--------
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD---SSN-------RPYEWALTDT--------  163 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~---~~~-------~~~~~~~~~~--------  163 (257)
                      .+.++.++||..   .+.|+|++|.|.++..+++..+++|+........   ...       .+........        
T Consensus       912 ~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~  988 (1205)
T KOG0606|consen  912 ERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADE  988 (1205)
T ss_pred             HHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccch
Confidence            577889999987   6899999999999999999999999843222100   000       0000000000        


Q ss_pred             CcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          164 LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       164 ~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .+.-....||+.|.+              ||...+......+|+|+.|+.++|.++|.+||...
T Consensus       989 ~~~~~~~~~t~~~la--------------Pe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  989 ARRKHAVVGTPDYLA--------------PEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             hhccccccCCCcccC--------------CcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence            011234568899999              77888888889999999999999999999999864

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.86  E-value=0.00026  Score=56.66  Aligned_cols=42  Identities=36%  Similarity=0.584  Sum_probs=30.8

Q ss_pred             HHHHHHHH-HhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          102 SVAHALSY-LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       102 ~i~~~l~~-LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      +++..+.. +|..   |++|+||.+.||+++.+ .+.++|||.+...
T Consensus       114 ~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  114 EILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEecCcceec
Confidence            45554444 5677   99999999999999877 8999999987644

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=9.2e-06  Score=73.83  Aligned_cols=155  Identities=25%  Similarity=0.298  Sum_probs=101.1

Q ss_pred             ccccccceeeee--cCceeEEEEEe---CCCCEEEEEEcCccccccH---HHHHHH------------------------
Q 039073           45 TEEFHIKYCIGT--GGYGSVYKAEL---PDGKVVALKKLHQSETEDS---AFVKSF------------------------   92 (257)
Q Consensus        45 ~~~~~~~~~lg~--G~~g~V~~~~~---~~~~~vaiK~~~~~~~~~~---~~~~~~------------------------   92 (257)
                      .+.|.+.+.+|.  |.+|.+|.+..   .++..+|+|+-+.......   .....+                        
T Consensus       113 ~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~  192 (524)
T KOG0601|consen  113 DQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGI  192 (524)
T ss_pred             hhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCc
Confidence            345777888999  99999999954   4688899988542211000   000000                        


Q ss_pred             ---------------HH---------HHHHHHHHHHH----HHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccC
Q 039073           93 ---------------QN---------EAHVLSTSVAH----ALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGT  143 (257)
Q Consensus        93 ---------------~~---------e~~~l~~~i~~----~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~  143 (257)
                                     ..         ++.-...+...    |+..+|..   .++|.|+||.|+.+..+ ..++++|||+
T Consensus       193 lfiqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~df~~  269 (524)
T KOG0601|consen  193 LFIQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTDFGL  269 (524)
T ss_pred             ceeeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCCcce
Confidence                           00         00001113444    89999988   99999999999999988 7889999998


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      ...+...........        .-...|...|++||+....               ++...|++|+|.++.+...|..+
T Consensus       270 v~~i~~~~~~~~~~~--------~~r~~~~~~Y~~ke~~~~l---------------~~~~~di~sl~ev~l~~~l~~~~  326 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKV--------SKRPEGDCIYAAKELLNGL---------------ATFASDIFSLGEVILEAILGSHL  326 (524)
T ss_pred             eEEccCCccccceee--------eecCCCCceEeChhhhccc---------------cchHhhhcchhhhhHhhHhhccc
Confidence            776654332221110        0112456678895554333               47899999999999998887665


Q ss_pred             Cc
Q 039073          224 GE  225 (257)
Q Consensus       224 f~  225 (257)
                      ..
T Consensus       327 ~~  328 (524)
T KOG0601|consen  327 PS  328 (524)
T ss_pred             cc
Confidence            54

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.68  E-value=0.00028  Score=58.46  Aligned_cols=110  Identities=28%  Similarity=0.323  Sum_probs=75.2

Q ss_pred             CCcCHHHHHhhccccccceeeeecCc---eeEEEEEeCCCCEEEEEEcCccccccHH--------------------HHH
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGY---GSVYKAELPDGKVVALKKLHQSETEDSA--------------------FVK   90 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~---g~V~~~~~~~~~~vaiK~~~~~~~~~~~--------------------~~~   90 (257)
                      ...+++.+.....+..+....|..+.   +.||+|...++..+|+|+++........                    .+.
T Consensus        33 D~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~  112 (268)
T COG1718          33 DKRTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVF  112 (268)
T ss_pred             hhHHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHH
Confidence            55677788888888877777776555   5799998888999999999754221111                    111


Q ss_pred             HH-HHHHHHH-------------------------------------------------HHHHHHHHHHHhh-CCCCCeE
Q 039073           91 SF-QNEAHVL-------------------------------------------------STSVAHALSYLHH-DCTLSIV  119 (257)
Q Consensus        91 ~~-~~e~~~l-------------------------------------------------~~~i~~~l~~LH~-~~~~~i~  119 (257)
                      .+ ..|..-|                                                 ..++++.+.-|-. .   +++
T Consensus       113 ~W~~kEf~NL~R~~eAGVrvP~Pi~~~~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a---~LV  189 (268)
T COG1718         113 AWARKEFRNLKRAYEAGVRVPEPIAFRNNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEA---GLV  189 (268)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCceeecCCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhc---Ccc
Confidence            11 1122221                                                 2246666665554 5   999


Q ss_pred             eeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          120 HRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       120 H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      |+||+.=|||+. ++.+.++|+|-+...
T Consensus       190 HgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         190 HGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             cccchhhheEEE-CCeEEEEECcccccc
Confidence            999999999999 889999999876644

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.65  E-value=0.00061  Score=57.11  Aligned_cols=104  Identities=26%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHH-----------------H--HHHHHHHHHH
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSA-----------------F--VKSFQNEAHV   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~-----------------~--~~~~~~e~~~   98 (257)
                      +..+.....-..+.+.||-|--+.||.|..+.|.++|||.=+....+...                 .  ....++|.+.
T Consensus        83 L~~l~~r~~ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~  162 (304)
T COG0478          83 LHALVKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEA  162 (304)
T ss_pred             HHHHHHcChHHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHH
Confidence            34445555556778999999999999999999999999976533211000                 0  1123344444


Q ss_pred             HHH--------------------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           99 LST--------------------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        99 l~~--------------------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                      |.+                                            .|++-+.-.-+.   |++|+|+++=||+++.+|
T Consensus       163 L~~L~~~G~~VP~P~~~nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~---GiVHGDlSefNIlV~~dg  239 (304)
T COG0478         163 LQRLYPEGVKVPKPIAWNRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRR---GIVHGDLSEFNILVTEDG  239 (304)
T ss_pred             HHHhhhcCCCCCCccccccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHc---CccccCCchheEEEecCC
Confidence            322                                            344444444455   999999999999999999


Q ss_pred             CeEEeeccCc
Q 039073          135 EAFVADFGTA  144 (257)
Q Consensus       135 ~~~l~dfg~~  144 (257)
                      .+.++||--+
T Consensus       240 ~~~vIDwPQ~  249 (304)
T COG0478         240 DIVVIDWPQA  249 (304)
T ss_pred             CEEEEeCccc
Confidence            9999999543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.36  E-value=0.0016  Score=52.84  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             CCeEeeCCCCCCeEEcC--CCCeEEeeccCccc
Q 039073          116 LSIVHRDISSNNILLDS--NLEAFVADFGTARL  146 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~--~~~~~l~dfg~~~~  146 (257)
                      ..++|+|+.+.||+++.  ++.+.+.||+.+..
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence            45899999999999998  56678999987764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.28  E-value=0.0026  Score=51.98  Aligned_cols=96  Identities=22%  Similarity=0.242  Sum_probs=68.0

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHH------HHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQ------NEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~------~e~~~--------------------   98 (257)
                      ..+|+..+.+.......|.+.+.. |+.+++|..+......+.....+.      +++..                    
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei~-~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEID-GKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEEC-CcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            567888888888777777777774 678999988765433333332221      11110                    


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                     ++..+.+++.-+|..   |+.|+|..|.|++++.++ +++.|++..+
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHKH---GFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHHc---CCccCCCCcCcEEEECCc-EEEEECcccc
Confidence                                           223588899999999   999999999999998554 8999997654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.27  E-value=0.00065  Score=58.28  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC-CCCCccccccCCCcccccccccc
Q 039073           96 AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS-SNRPYEWALTDTLPQVNKIIGCI  174 (257)
Q Consensus        96 ~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gt~  174 (257)
                      -+-+..||+.||.|||+. .+.++|+++.-..+.+..++-+++.--... ...... .....+         .....+.+
T Consensus       178 wkkw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig~~ap~-s~h~s~~~~~~~E---------k~~~~~~~  246 (458)
T KOG1266|consen  178 WKKWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIGSVAPD-STHPSVNSTREAE---------KSVNTSLP  246 (458)
T ss_pred             HHHHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEecccCcc-ccchhhhhhhHhh---------hhccccCC
Confidence            344667999999999987 888999999999999998887776522111 111000 000000         01123445


Q ss_pred             cchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       175 ~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      +|.+              |+.-.....+..+|||+||+-..+|..|..
T Consensus       247 g~~a--------------~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  247 GFSA--------------PESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             cccc--------------CCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            5655              454444445789999999999999988753

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.23  E-value=0.00054  Score=58.01  Aligned_cols=49  Identities=29%  Similarity=0.339  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-------CCCeEEeeccCccc
Q 039073           95 EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-------NLEAFVADFGTARL  146 (257)
Q Consensus        95 e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-------~~~~~l~dfg~~~~  146 (257)
                      +...+..+++..+.-||+.   |++|+|+++.||+++.       +..+.++||+.+..
T Consensus       139 ~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        139 LKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            3445667899999999999   9999999999999985       45789999998753

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.19  E-value=0.00056  Score=55.59  Aligned_cols=50  Identities=26%  Similarity=0.452  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeeccCcccc
Q 039073           95 EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADFGTARLL  147 (257)
Q Consensus        95 e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~dfg~~~~~  147 (257)
                      +.+.+..+++..+.-||+.   |++|+|+++.||+++.+.   .+.++||+.+...
T Consensus       119 ~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  119 QRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             hHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            3456777899999999999   999999999999999887   7889999877654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=97.09  E-value=0.0031  Score=51.25  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC--eEEeeccCccc
Q 039073          102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE--AFVADFGTARL  146 (257)
Q Consensus       102 ~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~--~~l~dfg~~~~  146 (257)
                      +++.++.-||+.   |+.|+|+-+.||+++.++.  ++++||..++.
T Consensus       136 ~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        136 AVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            688999999999   9999999999999987777  89999987654

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.97  E-value=0.005  Score=48.58  Aligned_cols=90  Identities=23%  Similarity=0.350  Sum_probs=62.4

Q ss_pred             cccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH--------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--------------------------  101 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--------------------------  101 (257)
                      ....+.|++|.+|.||++.+. |..+|+|+-+.+..     ...+..|++++..                          
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds~-----r~~l~kEakiLeil~g~~~~p~vy~yg~~~i~me~i~G~   97 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWR-GGEVALKVRRRDSP-----RRNLEKEAKILEILAGEGVTPEVYFYGEDFIRMEYIDGR   97 (201)
T ss_pred             hhhhhhhhcccccEEEEeecc-CceEEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCCceEEEechhhhhhhhhcCc
Confidence            456678999999999999886 45788887765432     2344555544221                          


Q ss_pred             ---------------HHHHHHHHHhhCCCCCeEeeCCC-CCCeEEcCCCCeEEeeccCccc
Q 039073          102 ---------------SVAHALSYLHHDCTLSIVHRDIS-SNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       102 ---------------~i~~~l~~LH~~~~~~i~H~dLk-p~nill~~~~~~~l~dfg~~~~  146 (257)
                                     .++++---|-..   ||-|..|. |...++.+++.+.|+||..+..
T Consensus        98 ~L~~~~~~~~rk~l~~vlE~a~~LD~~---GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112          98 PLGKLEIGGDRKHLLRVLEKAYKLDRL---GIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             chhhhhhcccHHHHHHHHHHHHHHHHh---ccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence                           244443334444   99999996 7777777777999999988774

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.50  E-value=0.023  Score=52.55  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=27.7

Q ss_pred             eeeeecCceeEEEEEeCCCCEEEEEEcCcc
Q 039073           52 YCIGTGGYGSVYKAELPDGKVVALKKLHQS   81 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~   81 (257)
                      +.|+..+.|+|++|+.++|..||||+-++.
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~  196 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPG  196 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcC
Confidence            789999999999999999999999998765

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.40  E-value=0.031  Score=45.21  Aligned_cols=33  Identities=30%  Similarity=0.586  Sum_probs=29.7

Q ss_pred             ccccccceeeeecCc-eeEEEEEeCCCCEEEEEEc
Q 039073           45 TEEFHIKYCIGTGGY-GSVYKAELPDGKVVALKKL   78 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~-g~V~~~~~~~~~~vaiK~~   78 (257)
                      .++++.++.||.|.- |.||+++.. |+.||+|.+
T Consensus        36 ~~~I~flefLg~g~~~~~V~kv~I~-g~~YALKlf   69 (207)
T PF13095_consen   36 GDDIEFLEFLGHGSHDGYVFKVEID-GRIYALKLF   69 (207)
T ss_pred             CCcEeeeeecCCCCceeEEEEEEEC-CeEEEEEEe
Confidence            388999999999999 999999995 779999993

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=95.89  E-value=0.086  Score=42.69  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CCCeEeeCCCCCCeEEc-CCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLD-SNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~-~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+.|.||+++ .++.+.+.||+.+...
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            45799999999999999 5565679999876543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=95.65  E-value=0.15  Score=42.03  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      .++|+|+.|.|++++.++ +.+.||+.+...
T Consensus       154 ~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~G  183 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGKG-TYWIDLGDFGYG  183 (226)
T ss_pred             ceEecCCCCCcEEEcCCC-cEEEechhcCcC
Confidence            478999999999999887 999999877644

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PRK05231 homoserine kinase; Provisional

Probab=95.35  E-value=0.22  Score=42.99  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                      +.+++|+|+.|.|++++.+....+.||+.+..
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            45899999999999999665567999988753

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=94.84  E-value=0.024  Score=41.84  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=28.2

Q ss_pred             ceeeeecCceeEEEEEeCCCCEEEEEEcCcc
Q 039073           51 KYCIGTGGYGSVYKAELPDGKVVALKKLHQS   81 (257)
Q Consensus        51 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~   81 (257)
                      .+.|+.|+.|+||+|..++|+.||||+.++.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~   46 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPG   46 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchH
Confidence            4789999999999999988999999988764

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=94.56  E-value=0.5  Score=43.49  Aligned_cols=46  Identities=15%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      +..|+..||.++|+.   |+.-+-|.+.+|+++.+-.++++.-|+....
T Consensus       398 y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl  443 (655)
T KOG3741|consen  398 YISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVL  443 (655)
T ss_pred             HHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeee
Confidence            445899999999999   9999999999999998878888877765544

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=93.50  E-value=1  Score=40.44  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..++|+|+.+.||++..+ .+++.|+.++...
T Consensus       223 ~~l~HgDl~~gni~~~~~-~~~viD~E~a~~G  253 (401)
T PRK09550        223 EALLHGDLHTGSIFVTEE-ETKVIDPEFAFYG  253 (401)
T ss_pred             CceeeccCCcccEEeeCC-CcEEEeccccccC
Confidence            368999999999999766 5889999876644

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=93.08  E-value=0.36  Score=42.17  Aligned_cols=101  Identities=19%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHH-----------------HH--HHHHHHHHH
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-----------------VK--SFQNEAHVL   99 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~-----------------~~--~~~~e~~~l   99 (257)
                      ..+.+-..-+.++++||-|--+-||.+-...|+..++|.-+....+....                 +.  ....|...+
T Consensus        85 ktL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafm  164 (465)
T KOG2268|consen   85 KTLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFM  164 (465)
T ss_pred             HHHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHH
Confidence            33444444578899999999999999988889999988665332211100                 00  111222221


Q ss_pred             H-------------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCe
Q 039073          100 S-------------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA  136 (257)
Q Consensus       100 ~-------------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~  136 (257)
                      .                                           ..+..-+--|..+   |++|+|..-=||+++.++.+
T Consensus       165 kaL~e~gfpVPkpiD~~RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~lm~~Iv~la~~---GlIHgDFNEFNimv~dd~~i  241 (465)
T KOG2268|consen  165 KALYERGFPVPKPIDHNRHCVVMELVDGYPLRQVRHVEDPPTLYDDLMGLIVRLANH---GLIHGDFNEFNIMVKDDDKI  241 (465)
T ss_pred             HHHHHcCCCCCCcccccceeeHHHhhcccceeeeeecCChHHHHHHHHHHHHHHHHc---CceecccchheeEEecCCCE
Confidence            1                                           1233444456667   99999999999999999999


Q ss_pred             EEeecc
Q 039073          137 FVADFG  142 (257)
Q Consensus       137 ~l~dfg  142 (257)
                      +++||-
T Consensus       242 ~vIDFP  247 (465)
T KOG2268|consen  242 VVIDFP  247 (465)
T ss_pred             EEeech
Confidence            999994

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=92.90  E-value=0.33  Score=41.51  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             CCCCeEeeCCCCCCeEEcCC----CCeEEeeccCcccc
Q 039073          114 CTLSIVHRDISSNNILLDSN----LEAFVADFGTARLL  147 (257)
Q Consensus       114 ~~~~i~H~dLkp~nill~~~----~~~~l~dfg~~~~~  147 (257)
                      ....++|+|+.+.||+++.+    +.+.++||..+...
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~  214 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYN  214 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCC
Confidence            35689999999999999874    78999999987654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=92.13  E-value=0.61  Score=37.27  Aligned_cols=54  Identities=13%  Similarity=0.084  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           94 NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        94 ~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ....-++.++++.+.++++.....+.-.|++++|+.+++++.+++.|.......
T Consensus        59 ~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   59 EQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            334457788999999999865557888999999999999999999999876554

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=91.78  E-value=0.17  Score=41.65  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..+++|+|+.+.|++++.....-+.||+.+...
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~g  195 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVG  195 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCcC
Confidence            446999999999999987655669999986543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=91.24  E-value=0.21  Score=40.98  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             CCCeEeeCCCCCCeEEcC-CCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDS-NLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~  147 (257)
                      ..+++|+|+.+.||+++. ++.+.+.||..+...
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~  202 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYN  202 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcC
Confidence            357999999999999997 578999999877643

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=91.02  E-value=1.9  Score=38.49  Aligned_cols=34  Identities=38%  Similarity=0.524  Sum_probs=28.1

Q ss_pred             cccceeeeecCceeEEEEEeCCCCEEEEEEcCcc
Q 039073           48 FHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQS   81 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~   81 (257)
                      -++.-+|+.|--+.||.|...+|..+|||+++-+
T Consensus       146 ~~inGCiSTGKEANVYHat~~dG~~~AIKIYKTS  179 (520)
T KOG2270|consen  146 VEINGCISTGKEANVYHATEEDGSEFAIKIYKTS  179 (520)
T ss_pred             eecccccccCccceeEeeecCCCceEEEEEEeee
Confidence            3455678888889999998888999999999743

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=90.88  E-value=0.92  Score=38.83  Aligned_cols=30  Identities=33%  Similarity=0.511  Sum_probs=25.7

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                      ..+++|+|+.+.|++++. +.+.+.||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            348999999999999987 668899998654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=90.85  E-value=1.1  Score=39.73  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=25.1

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      .++|+|+.+.||+++.+. +++.|+..+...+
T Consensus       193 ~llHGDl~~gNi~~~~~~-~~~iD~e~~~~G~  223 (370)
T TIGR01767       193 TLLHGDLHSGSIFVSEHE-TKVIDPEFAFYGP  223 (370)
T ss_pred             eeeeccCCcccEEEcCCC-CEEEcCcccccCc
Confidence            689999999999997654 7799988766443

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=90.64  E-value=0.22  Score=41.18  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=27.9

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      .+.++|+|+.|.|++++.++...|.||+.+...
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~g  194 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVA  194 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEccccccc
Confidence            357999999999999998777789999877543

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=90.28  E-value=0.93  Score=37.50  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             HHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073          104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus       104 ~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                      +.+|.-.|+. ..+.+|+|..|+||+=|..|.+||.|-+.
T Consensus       151 i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  151 IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhh
Confidence            4567777844 45899999999999999999999998763

The function of this family is unknown.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=90.03  E-value=0.67  Score=39.84  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=27.9

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                      ..+++|+|+.+.|++++.++...+.||+.+..
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFACT  217 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeecccccC
Confidence            46899999999999999887678999988753

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=89.44  E-value=0.34  Score=40.47  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      ..++|+|+.|.|++++.++ +.+.||..+....
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gd  177 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASDGD  177 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCcCC
Confidence            4689999999999999877 7899998876543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=89.32  E-value=1  Score=38.73  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=27.9

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                      ..+++|+|+.+.|++++.++.+.++||..+..
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            45899999999999999988899999977653

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PRK10271 thiK thiamine kinase; Provisional

Probab=89.04  E-value=0.4  Score=38.31  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=26.9

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      ...+|+|+.|.|++++.++ ++++||+.+....
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gD  108 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGD  108 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccCCC
Confidence            3579999999999998777 8899999876543

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=88.90  E-value=0.29  Score=41.66  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      +.+++|+|+.|.|++++.++.+.+.||+.+...
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~g  206 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFACTD  206 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhcCc
Confidence            347999999999999998777789999876543

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=88.71  E-value=5.3  Score=32.21  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=28.0

Q ss_pred             HHHHHhhCCCCCeEeeCCCCCCeEEcCC--C--CeEEee-ccCccc
Q 039073          106 ALSYLHHDCTLSIVHRDISSNNILLDSN--L--EAFVAD-FGTARL  146 (257)
Q Consensus       106 ~l~~LH~~~~~~i~H~dLkp~nill~~~--~--~~~l~d-fg~~~~  146 (257)
                      -..+|-++   .|+.+|++|.||++...  +  .+.+.| ||....
T Consensus       130 f~~~l~~~---~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  130 FKRYLLDH---HIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             HHHHHHHc---CCeecCCCcccEEEEecCCCceEEEEEeCCCCccc
Confidence            34567777   89999999999999633  2  467777 776554

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=87.07  E-value=7.3  Score=33.36  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=18.6

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                      .+.++|+||.+.|++.+.++.+.|.|=.
T Consensus       187 ~PsLlHGDLW~GN~~~~~~g~p~l~DPa  214 (288)
T PF03881_consen  187 KPSLLHGDLWSGNVGFDADGEPVLFDPA  214 (288)
T ss_dssp             --EEE-SS-SGGGEEEETTE-EEE-S--
T ss_pred             CceeeEcCccccceeecCCCCceeeccc
Confidence            4569999999999999999988887754

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=87.00  E-value=0.16  Score=47.71  Aligned_cols=88  Identities=27%  Similarity=0.245  Sum_probs=62.4

Q ss_pred             HHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHh
Q 039073          103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY  182 (257)
Q Consensus       103 i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~  182 (257)
                      -..+++++|+.   .=+|+|    ||+..+ +..+..+|+.....+....              .+...++..+++    
T Consensus       345 et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~--------------~~t~~~~~~~~~----  398 (829)
T KOG0576|consen  345 ETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTMK--------------PRTAIGTPEPLA----  398 (829)
T ss_pred             hcccccccccc---cccCcc----cccccc-cccccccccCCcccCcccc--------------cccCCCCCCCCC----
Confidence            44567777754   446776    655544 6778889988766543321              133567888888    


Q ss_pred             hhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          183 FQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       183 ~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                ||+.....++...|.|+.|.-..++.-|-+|-..
T Consensus       399 ----------pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~  432 (829)
T KOG0576|consen  399 ----------PEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSS  432 (829)
T ss_pred             ----------chhhcccccccCCCccCCCcchhhcCCCCCCCCC
Confidence                      7777777889999999999888888888877653

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=86.52  E-value=0.48  Score=38.30  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CCeEeeCCCCCCeEE-cCCCCeEEeeccCccc
Q 039073          116 LSIVHRDISSNNILL-DSNLEAFVADFGTARL  146 (257)
Q Consensus       116 ~~i~H~dLkp~nill-~~~~~~~l~dfg~~~~  146 (257)
                      ..+.|+|+.+.||++ +.++.++++||..+..
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            378999999999999 8889999999987764

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=85.43  E-value=0.86  Score=36.53  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             CCeEeeCCCCCCeEEcCCC-----CeEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNL-----EAFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~-----~~~l~dfg~~~~~  147 (257)
                      ..++|+|+.+.|+++..++     .+.+.||..+...
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g  156 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYG  156 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCcC
Confidence            4799999999999997543     5789999877643

subfamily of choline kinases

>COG4499 Predicted membrane protein [Function unknown]

Probab=85.27  E-value=12  Score=33.14  Aligned_cols=74  Identities=19%  Similarity=0.160  Sum_probs=44.4

Q ss_pred             CCEEEEEEcCccccccHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           70 GKVVALKKLHQSETEDSAFVKSFQNEA-HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        70 ~~~vaiK~~~~~~~~~~~~~~~~~~e~-~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+.--+.....-..++.+.... ..++.+.+..|+-+- +   .-.|.=|.|+||+++.+..+....+|+-...
T Consensus        60 ~Ds~vIsy~i~~~~~~F~~~k~~~k~~Klr~a~~~I~~l~e~~-~---tr~~~~laPeNilf~~~l~p~~vH~Glk~~l  134 (434)
T COG4499          60 NDSFVISYPIPEAAKSFASAKRKEKTRKLRLALQNIATLSELN-N---TRYTFFLAPENILFDGGLTPFFVHRGLKNSL  134 (434)
T ss_pred             CceeEEEecCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-c---cceeEEecchheEEcCCCceEEEecchhccC
Confidence            344666655443333323334433322 223555555555432 2   5577778999999999999999999986544

>PLN02236 choline kinase

Probab=85.13  E-value=0.87  Score=40.03  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             CCCeEeeCCCCCCeEEcC-CCCeEEeeccCccccc
Q 039073          115 TLSIVHRDISSNNILLDS-NLEAFVADFGTARLLH  148 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~  148 (257)
                      ...++|+|+.+.||+++. ++.+.+.||..+...+
T Consensus       199 ~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~  233 (344)
T PLN02236        199 EIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNP  233 (344)
T ss_pred             CceEEeCCCCcCcEEEeCCCCcEEEEeehhccccc
Confidence            347999999999999986 4679999998877543

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=84.76  E-value=1.1  Score=38.86  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             HHHHHhhCC-----CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          106 ALSYLHHDC-----TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       106 ~l~~LH~~~-----~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                      ...+++.+.     ...++|+|+++.|++++..+..-+.||+.+...++
T Consensus       183 ~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP  231 (321)
T COG3173         183 LIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDP  231 (321)
T ss_pred             HHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEeccccccCCc
Confidence            345555442     35799999999999999888888999999887654

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=84.20  E-value=0.88  Score=38.67  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=26.3

Q ss_pred             CCeEeeCCCCCCeEEcCCCC-eEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNLE-AFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~-~~l~dfg~~~~~  147 (257)
                      ..++|+|+.+.|++++.++. .-+.||+.+...
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            46999999999999997555 459999987654

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=83.86  E-value=3.4  Score=37.41  Aligned_cols=41  Identities=29%  Similarity=0.450  Sum_probs=28.9

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEe----------------CCCCEEEEEEcCcc
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAEL----------------PDGKVVALKKLHQS   81 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~----------------~~~~~vaiK~~~~~   81 (257)
                      +++++....++    ..||.|+.++||+|..                ...+.+|||+..+.
T Consensus       184 ~~~eiF~efn~----~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~  240 (565)
T KOG1236|consen  184 KIEEIFSEFNR----EPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPN  240 (565)
T ss_pred             cHHHHHHhcCC----cccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCcc
Confidence            45555555544    5899999999999832                12457899999764

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=82.54  E-value=0.36  Score=50.13  Aligned_cols=82  Identities=10%  Similarity=-0.008  Sum_probs=60.9

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhh
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELA  196 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~  196 (257)
                      -.+|++|++.|.+|+.+-.++++++|+.+..++....             .....+++.|+.              ++..
T Consensus      1360 T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf-------------~Gl~l~sp~~v~--------------qli~ 1412 (2724)
T KOG1826|consen 1360 TNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSF-------------FGLELCSPIYVL--------------QLIK 1412 (2724)
T ss_pred             cchhhhhhhhccceecCCcccccccccccccCchHhh-------------hhhhhCCHHHHH--------------HHHH
Confidence            3689999999999999999999999998833222111             122345666666              5555


Q ss_pred             hcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          197 YTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       197 ~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ....++.++|+|..|+.+|+...|-.+|-
T Consensus      1413 N~ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1413 NEIKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            55556778999999999999998988874

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=82.48  E-value=1.3  Score=37.65  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      .++|+|+.|+|++.+..+.+.|+||.-|...
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~  184 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGLN  184 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCCCc
Confidence            6999999999999999899999999776643

>PRK06148 hypothetical protein; Provisional

Probab=81.98  E-value=3.3  Score=41.91  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=26.4

Q ss_pred             CCCeEeeCCCCCCeEEcCCC--CeE-EeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNL--EAF-VADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~--~~~-l~dfg~~~~~  147 (257)
                      ..+++|+|+.+.||+++.++  .+. |.|||-+...
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~  237 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAVHA  237 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECcccccc
Confidence            34899999999999999775  454 9999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-09
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-09
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		9e-08
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-07
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-07
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		3e-07
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		3e-07
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-07
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		3e-07
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		4e-07
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-07
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		4e-07
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		4e-07
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-07
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		4e-07
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-07
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		5e-07
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-07
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		5e-07
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		5e-07
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		5e-07
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		5e-07
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		5e-07
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-07
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		6e-07
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		6e-07
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-07
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-07
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		6e-07
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-07
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		7e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		7e-07
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-07
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-06
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-06
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-06
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-06
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		1e-06
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-06
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		6e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		7e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		8e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		8e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		9e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-05
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-05
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-05
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-05
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		2e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-05
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-05
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		3e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		3e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		3e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		3e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		4e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		4e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		4e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		6e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		6e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		6e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		6e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		6e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		6e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		6e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		6e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		6e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		6e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		6e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		6e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		6e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		6e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		6e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		6e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		7e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		7e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		7e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		7e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		7e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		7e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		7e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		7e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		7e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		7e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		7e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		7e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		8e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		8e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		8e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		8e-05
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		8e-05
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		9e-05
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		9e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		9e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		9e-05
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		9e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		9e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		9e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		9e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		1e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		1e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-04
3a7f_A	303	Human Mst3 Kinase Length = 303		2e-04
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-04
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		2e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		2e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-04
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		2e-04
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		2e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		2e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		2e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		2e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		2e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		2e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		3e-04
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		3e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		3e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		3e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		3e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		3e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		3e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		3e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		3e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		3e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		3e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		3e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		3e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		4e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		4e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		4e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		4e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		4e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		4e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		4e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		5e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		5e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		5e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		5e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		5e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		5e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		6e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		7e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		7e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		7e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-04
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		8e-04
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		8e-04
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		8e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		8e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		8e-04
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		8e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		8e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		8e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		8e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		8e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		8e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		8e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		8e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		8e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		8e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		8e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		9e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		9e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		9e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		9e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		9e-04

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 84/236 (35%), Gaps = 80/236 (33%)
Query: 35  KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK---- 90
           ++   DL  AT  F  K+ IG G +G VYK  L DG  VALK+     ++     +    
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 91  --SFQNEAHVLS----------------------------------------------TS 102
             SF    H++S                                                
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
            A  L YLH   T +I+HRD+ S NILLD N    + DFG         S +  E   T 
Sbjct: 148 AARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGI--------SKKGTELGQTH 196
Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
               V   +G I       YF +  L             TEK DVYSFGVV  +VL
Sbjct: 197 LXXVVKGTLGYIDPE----YFIKGRL-------------TEKSDVYSFGVVLFEVL 235

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 84/236 (35%), Gaps = 80/236 (33%)
Query: 35  KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK---- 90
           ++   DL  AT  F  K+ IG G +G VYK  L DG  VALK+     ++     +    
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 91  --SFQNEAHVLS----------------------------------------------TS 102
             SF    H++S                                                
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
            A  L YLH   T +I+HRD+ S NILLD N    + DFG         S +  E   T 
Sbjct: 148 AARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGI--------SKKGTELDQTH 196
Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
               V   +G I       YF +  L             TEK DVYSFGVV  +VL
Sbjct: 197 LXXVVKGTLGYIDPE----YFIKGRL-------------TEKSDVYSFGVVLFEVL 235

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 36/129 (27%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL-----HVDSSN 153
           ++   A  L+YLH  C   I+HRD+ + NILLD   EA V DFG A+L+     HV  + 
Sbjct: 144 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 203
Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           R                 G I + A               E   T   +EK DV+ +GV+
Sbjct: 204 R-----------------GTIGHIA--------------PEYLSTGKSSEKTDVFGYGVM 232
Query: 214 ALKVLMGTH 222
            L+++ G  
Sbjct: 233 LLELITGQR 241

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  L+YLH  C   I+HRD+ + NILLD   EA V DFG A+L+     +     
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXH----- 190
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
                   V   IG I+                  E   T   +EK DV+ +GV+ L+++
Sbjct: 191 ----VXXAVRGXIGHIA-----------------PEYLSTGKSSEKTDVFGYGVMLLELI 229
Query: 219 MGTH 222
            G  
Sbjct: 230 TGQR 233

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 28/118 (23%)
Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDT-LP 165
           L  + H   + IVHRDI   NIL+DSN    + DFG A+             AL++T L 
Sbjct: 121 LDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAK-------------ALSETSLT 167
Query: 166 QVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           Q N ++G + Y              F  E A      E  D+YS G+V  ++L+G  P
Sbjct: 168 QTNHVLGTVQY--------------FSPEQAKGEATDECTDIYSIGIVLYEMLVGEPP 211

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 89/232 (38%), Gaps = 84/232 (36%)
Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS---- 100
           E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S    
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 101 -----------------------------------------------TSVAHALSYLHHD 113
                                                          T +A+ALSY H  
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH-- 129
Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            +  ++HRDI   N+LL SN E  +ADFG +  +H  SS R       DTL       G 
Sbjct: 130 -SKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRR-------DTL------CGT 173
Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 174 LDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 89/234 (38%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       DTL       
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------DTL------C 168
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 169 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 151
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R             + + 
Sbjct: 152 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------DDLC 193
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 194 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 233

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 84/232 (36%), Gaps = 84/232 (36%)
Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS---- 100
           E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S    
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 101 -----------------------------------------------TSVAHALSYLHHD 113
                                                          T +A+ALSY H  
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH-- 129
Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            +  ++HRDI   N+LL SN E  +ADFG +  +H  SS R       D LP        
Sbjct: 130 -SKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP------- 179
Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                               E+    +  EK D++S GV+  + L+G  P E
Sbjct: 180 --------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 85/234 (36%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A   + K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 126 ---SKKVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPP----- 175
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 176 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R              ++ 
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------TELC 167
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 168 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R             + + 
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------DDLC 170
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 171 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R      TD       + 
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------TD-------LC 168
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 169 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTXLCGTLDYLPP----- 175
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 176 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R      TD       + 
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------TD-------LC 167
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 168 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
            +  +A  ++YLH   +++I+HRD++S+N L+  N    VADFG ARL+ VD   +P E 
Sbjct: 113 FAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLM-VDEKTQP-EG 167
Query: 159 ALTDTLPQVNK---IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL 215
             +   P   K   ++G   + A               E+       EK DV+SFG+V  
Sbjct: 168 LRSLKKPDRKKRYTVVGNPYWMA--------------PEMINGRSYDEKVDVFSFGIVLC 213
Query: 216 KVL 218
           +++
Sbjct: 214 EII 216

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPP----- 178
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 179 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R      TD       + 
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------TD-------LC 167
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 168 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPP----- 175
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 176 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R      TD       + 
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------TD-------LC 172
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 173 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCH 130
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLXGTLDYLPP----- 180
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 181 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 127
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 128 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPP----- 177
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 178 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 209

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPP----- 175
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 176 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 124
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 125 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 174
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 175 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 206

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 87/234 (37%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 151
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R               + 
Sbjct: 152 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------TTLC 193
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 194 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 233

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 178
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 179 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPP----- 178
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 179 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 175
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 176 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 180
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 181 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 178
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 179 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 129
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 130 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 179
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 180 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 211

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCH 130
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 180
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 181 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 87/234 (37%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 142
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R               + 
Sbjct: 143 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------TTLC 184
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P   E+    +  EK D++S GV+  + L+G  P E
Sbjct: 185 GTLDY-----------LPP---EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 224

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 29/122 (23%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A+ +++LH +     +HRDI S NILLD    A ++DFG AR     +S +  + 
Sbjct: 138 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQT 189
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            +       ++I+G  +Y A                 A    +T K D+YSFGVV L+++
Sbjct: 190 VMX------SRIVGTTAYMAPE---------------ALRGEITPKSDIYSFGVVLLEII 228
Query: 219 MG 220
            G
Sbjct: 229 TG 230

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 122
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R       D LP      
Sbjct: 123 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPP----- 172
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 173 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 204

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 29/122 (23%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A+ +++LH +     +HRDI S NILLD    A ++DFG AR     +S +  + 
Sbjct: 138 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQT 189
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            +        +I+G  +Y A                 A    +T K D+YSFGVV L+++
Sbjct: 190 VMX------XRIVGTTAYMAPE---------------ALRGEITPKSDIYSFGVVLLEII 228
Query: 219 MG 220
            G
Sbjct: 229 TG 230

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 29/122 (23%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A+ +++LH +     +HRDI S NILLD    A ++DFG AR     +S +  + 
Sbjct: 132 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQX 183
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            +        +I+G  +Y A                 A    +T K D+YSFGVV L+++
Sbjct: 184 VMX------XRIVGTTAYMAPE---------------ALRGEITPKSDIYSFGVVLLEII 222
Query: 219 MG 220
            G
Sbjct: 223 TG 224

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 86/234 (36%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +  +H  SS R               + 
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR-------------TTLC 172
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
           G + Y           L P  +E        EK D++S GV+  + L+G  P E
Sbjct: 173 GTLDY-----------LPPEXIE---GRXHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 83/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +ADFG +   H  SS R       D LP      
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--CHAPSSRRTTLSGTLDYLPP----- 176
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 177 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 29/122 (23%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A+ +++LH +     +HRDI S NILLD    A ++DFG AR      ++  +  
Sbjct: 129 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR------ASEKFAQ 179
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
            +  +     +I+G  +Y A                 A    +T K D+YSFGVV L+++
Sbjct: 180 XVXXS-----RIVGTTAYXAPE---------------ALRGEITPKSDIYSFGVVLLEII 219
Query: 219 MG 220
            G
Sbjct: 220 TG 221

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +A  + YL     ++ VHRD+++ NIL++SNL   V+DFG +R L  D+S+  Y  AL 
Sbjct: 143 GIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALG 199
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
             +P        I Y                         T   DV+S+G+V  +V+
Sbjct: 200 GKIPIRWTAPEAIQYRKF----------------------TSASDVWSYGIVMWEVM 234

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 127
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +A+FG +  +H  SS R       D LP      
Sbjct: 128 ---SKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPP----- 177
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 178 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 209

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 84/234 (35%), Gaps = 84/234 (35%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAELPDGK-VVALKKLHQSETEDSAFVKSFQNEAHVLS-- 100
           A E+F I   +G G +G+VY A     K ++ALK L +++ E +      + E  + S  
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 101 -------------------------------------------------TSVAHALSYLH 111
                                                            T +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
              +  ++HRDI   N+LL S  E  +A+FG +  +H  SS R       D LP      
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPP----- 178
Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                                 E+    +  EK D++S GV+  + L+G  P E
Sbjct: 179 ----------------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL     +S VHRD+++ NIL++SNL   V+DFG +R L  +SS+  Y  +L  
Sbjct: 125 IASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGG 181
Query: 163 TLP 165
            +P
Sbjct: 182 KIP 184

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 81/239 (33%)
Query: 35  KISYEDLINATEE-FHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLH-QSETE------- 84
           K+  + L    EE F +   +G G YGSVYKA     G++VA+K++  +S+ +       
Sbjct: 17  KLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEIS 76
Query: 85  -----DSAFVKSF----------------------------------QNEAHVLSTSVAH 105
                DS  V  +                                  ++E   +  S   
Sbjct: 77  IMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLK 136
Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP 165
            L YLH    +  +HRDI + NILL++   A +ADFG A               LTD + 
Sbjct: 137 GLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVA-------------GQLTDXMA 180
Query: 166 QVNKIIGCISYYALWFYFQRHNLMPFHV-ELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           + N +IG       W       + P  + E+ Y  V     D++S G+ A+++  G  P
Sbjct: 181 KRNXVIGT----PFW-------MAPEVIQEIGYNCV----ADIWSLGITAIEMAEGKPP 224

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A             W
Sbjct: 137 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA--------TEKSRW 185
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 186 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 231
Query: 219 MGTHP 223
            G  P
Sbjct: 232 TGQLP 236

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A             W
Sbjct: 129 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA--------TEKSRW 177
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 178 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 223
Query: 219 MGTHP 223
            G  P
Sbjct: 224 TGQLP 228

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +           W
Sbjct: 137 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV--------KSRW 185
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 186 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 231
Query: 219 MGTHP 223
            G  P
Sbjct: 232 TGQLP 236

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +           W
Sbjct: 136 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV--------KSRW 184
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 185 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 230
Query: 219 MGTHP 223
            G  P
Sbjct: 231 TGQLP 235

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A             W
Sbjct: 109 IARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLA--------TEKSRW 157
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 158 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 203
Query: 219 MGTHP 223
            G  P
Sbjct: 204 TGQLP 208

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +           W
Sbjct: 114 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATV--------KSRW 162
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 163 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 208
Query: 219 MGTHP 223
            G  P
Sbjct: 209 TGQLP 213

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +           W
Sbjct: 114 IARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATV--------KSRW 162
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 163 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 208
Query: 219 MGTHP 223
            G  P
Sbjct: 209 TGQLP 213

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +    S +  +E 
Sbjct: 109 IARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE- 164
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
                     ++ G I    LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 165 ----------QLSGSI----LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 203
Query: 219 MGTHP 223
            G  P
Sbjct: 204 TGQLP 208

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +           W
Sbjct: 111 IARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATV--------KSRW 159
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
           + +    Q++  I       LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 160 SGSHQFEQLSGSI-------LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 205
Query: 219 MGTHP 223
            G  P
Sbjct: 206 TGQLP 210

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 25/125 (20%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW 158
           ++   A  + YLH     SI+HRD+ SNNI L  +L   + DFG A +    S +  +E 
Sbjct: 109 IARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE- 164
Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
                     ++ G I    LW       + P  + +      + + DVY+FG+V  +++
Sbjct: 165 ----------QLSGSI----LW-------MAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 203
Query: 219 MGTHP 223
            G  P
Sbjct: 204 TGQLP 208

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL     ++ VHR +++ NIL++SNL   V+DFG +R L  D+S+  Y  AL  
Sbjct: 118 IAAGMKYL---ADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGG 174
Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGT 221
            +P        I Y                         T   DV+S+G+V  +V+  G 
Sbjct: 175 KIPIRWTAPEAIQYRKF----------------------TSASDVWSYGIVMWEVMSYGE 212
Query: 222 HP 223
            P
Sbjct: 213 RP 214

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 76  KKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE 135
           K LH  ET+   F      +   ++   A  + YLH     +I+HRD+ SNNI L   L 
Sbjct: 120 KHLHVQETKFQMF------QLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLT 170
Query: 136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVEL 195
             + DFG A +           W+ +    QV +  G +    LW       + P  + +
Sbjct: 171 VKIGDFGLATV--------KSRWSGSQ---QVEQPTGSV----LW-------MAPEVIRM 208
Query: 196 AYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                 + + DVYS+G+V  +++ G  P
Sbjct: 209 QDNNPFSFQSDVYSYGIVLYELMTGELP 236

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NIL+ +     V DFG AR +  DS N         ++
Sbjct: 127 QALNFSHQN---GIIHRDVKPANILISATNAVKVVDFGIARAI-ADSGN---------SV 173
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 174 XQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 94  NEAHVLSTSVAHALSYLHHDC-------TLSIVHRDISSNNILLDSNLEAFVADFGTA 144
           NE   ++ ++A  L+YLH D          +I HRDI S N+LL +NL A +ADFG A
Sbjct: 121 NELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 78  LHQSETEDSAFVKSFQNEAHV-LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA 136
           LH SET+       F+ +  + ++   A  + YLH     SI+HRD+ SNNI L  +   
Sbjct: 110 LHASETK-------FEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTV 159
Query: 137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELA 196
            + DFG A             W+ +    Q++  I       LW       + P  + + 
Sbjct: 160 KIGDFGLA--------TEKSRWSGSHQFEQLSGSI-------LW-------MAPEVIRMQ 197
Query: 197 YTMVVTEKCDVYSFGVVALKVLMGTHP 223
            +   + + DVY+FG+V  +++ G  P
Sbjct: 198 DSNPYSFQSDVYAFGIVLYELMTGQLP 224

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 78  LHQSETEDSAFVKSFQNEAHV-LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA 136
           LH SET+       F+ +  + ++   A  + YLH     SI+HRD+ SNNI L  +   
Sbjct: 110 LHASETK-------FEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTV 159
Query: 137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELA 196
            + DFG A             W+ +    Q++  I       LW       + P  + + 
Sbjct: 160 KIGDFGLA--------TEKSRWSGSHQFEQLSGSI-------LW-------MAPEVIRMQ 197
Query: 197 YTMVVTEKCDVYSFGVVALKVLMGTHP 223
            +   + + DVY+FG+V  +++ G  P
Sbjct: 198 DSNPYSFQSDVYAFGIVLYELMTGQLP 224

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           ++E  +    +  AL +LH    L I++RDI   NILLDSN    + DFG ++    D +
Sbjct: 158 EHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADET 214
Query: 153 NRPYEWALT 161
            R Y++  T
Sbjct: 215 ERAYDFCGT 223

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL     +S VHRD+++ NIL++SNL   V+DFG +R L  +SS+     +L  
Sbjct: 127 IASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGG 183
Query: 163 TLP 165
            +P
Sbjct: 184 KIP 186

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 33/147 (22%)
Query: 78  LHQSETEDSAFVKSFQNEAHV-LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEA 136
           LH SET+       F+ +  + ++   A  + YLH     SI+HRD+ SNNI L  +   
Sbjct: 98  LHASETK-------FEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTV 147
Query: 137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELA 196
            + DFG A +           W+ +    Q++  I       LW       + P  + + 
Sbjct: 148 KIGDFGLATV--------KSRWSGSHQFEQLSGSI-------LW-------MAPEVIRMQ 185
Query: 197 YTMVVTEKCDVYSFGVVALKVLMGTHP 223
            +   + + DVY+FG+V  +++ G  P
Sbjct: 186 DSNPYSFQSDVYAFGIVLYELMTGQLP 212

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 94  NEAHVLSTSVAHALSYLHHDCTL--------SIVHRDISSNNILLDSNLEAFVADFGTA 144
           NE   ++ +++  LSYLH D           SI HRD  S N+LL S+L A +ADFG A
Sbjct: 112 NELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLA 170

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NI++ +     V DFG AR +  DS N         ++
Sbjct: 127 QALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN---------SV 173
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 174 TQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NI++ +     V DFG AR +  DS N         ++
Sbjct: 127 QALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN---------SV 173
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 174 TQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NI++ +     V DFG AR +  DS N         ++
Sbjct: 127 QALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN---------SV 173
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 174 TQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NI++ +     V DFG AR +  DS N         ++
Sbjct: 127 QALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN---------SV 173
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 174 TQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL      ++  D+++ G +  +++ 
Sbjct: 189 -----ARANSFVGTAQYVS--------------PELLTEKSASKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
            AL++ H +    I+HRD+   NI++ +     V DFG AR +  DS N         ++
Sbjct: 144 QALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN---------SV 190
Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            Q   +IG   Y           L P   E A    V  + DVYS G V  +VL G  P
Sbjct: 191 TQTAAVIGTAQY-----------LSP---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 235

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 115 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 165
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 166 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 206
Query: 220 GTHP 223
           G  P
Sbjct: 207 GLPP 210

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 116 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 166
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 167 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 207
Query: 220 GTHP 223
           G  P
Sbjct: 208 GLPP 211

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMXGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMXGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 114 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 164
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 165 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 205
Query: 220 GTHP 223
           G  P
Sbjct: 206 GLPP 209

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMXGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 113 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 163
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 164 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 204
Query: 220 GTHP 223
           G  P
Sbjct: 205 GLPP 208

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 189 -----ARANXFVGTAQYVS--------------PELLTEKSAXKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 118 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 163
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 164 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 205

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 186
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 187 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 220 GTHP 223
           G  P
Sbjct: 228 GLPP 231

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 139 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 189
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 190 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 230
Query: 220 GTHP 223
           G  P
Sbjct: 231 GLPP 234

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 189 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 139 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 189
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 190 -----ARANSFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 230
Query: 220 GTHP 223
           G  P
Sbjct: 231 GLPP 234

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMXGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 189 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 143 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 193
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 194 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 234
Query: 220 GTHP 223
           G  P
Sbjct: 235 GLPP 238

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 189 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMXGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 186
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 187 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 220 GTHP 223
           G  P
Sbjct: 228 GLPP 231

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 138 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 188
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 189 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 220 GTHP 223
           G  P
Sbjct: 230 GLPP 233

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 165
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 166 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 207

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 186
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 187 -----ARANAFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 220 GTHP 223
           G  P
Sbjct: 228 GLPP 231

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 141 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 191
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 192 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 232
Query: 220 GTHP 223
           G  P
Sbjct: 233 GLPP 236

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 136 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 186
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 187 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 220 GTHP 223
           G  P
Sbjct: 228 GLPP 231

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YLH    + I HRDI   N+LLD      ++DFG A +   ++  R            +N
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER-----------LLN 164
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           K+ G + Y A     +R     FH          E  DV+S G+V   +L G  P
Sbjct: 165 KMCGTLPYVAPELLKRRE----FH---------AEPVDVWSCGIVLTAMLAGELP 206

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 20  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 79
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 80  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 139
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 140 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 195

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 18  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 78  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 137
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 138 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 193

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 135 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 185
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 186 -----ARANSFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 226
Query: 220 GTHP 223
           G  P
Sbjct: 227 GLPP 230

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 120 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 170
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 171 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 211
Query: 220 GTHP 223
           G  P
Sbjct: 212 GLPP 215

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
           +  +  AL YLH      I+HRD+   NILL+ ++   + DFGTA++L  +S        
Sbjct: 135 TAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ------ 185
Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 + N  +G   Y +               EL       +  D+++ G +  +++ 
Sbjct: 186 -----ARANXFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVA 226
Query: 220 GTHP 223
           G  P
Sbjct: 227 GLPP 230

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 18  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 78  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 137
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 138 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 193

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 19  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 79  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 138
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 139 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 194

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 59/182 (32%)
Query: 41  LINATEEFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAF 88
           ++  TE   +K  +G+G +G+VYK   +PDG+     VA+K L ++       E  D A+
Sbjct: 13  ILKETELRKVK-VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAY 71
Query: 89  VKSFQNEAHV-------LSTSVAHALSYLHHDCTLS------------------------ 117
           V +     +V       L+++V      + + C L                         
Sbjct: 72  VMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKG 131
Query: 118 --------IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTD 162
                   +VHRD+++ N+L+ S     + DFG ARLL       H D    P +W   +
Sbjct: 132 MSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALE 191
Query: 163 TL 164
           ++
Sbjct: 192 SI 193

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 17  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 76
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 77  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 136
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 137 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 192

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 59/176 (33%)
Query: 41  LINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVV----ALKKLHQS-------ETEDSAF 88
           ++  TE   +K  +G+G +G+VYK   +P+G+ V    A+K L+++       E  D A 
Sbjct: 34  ILKETELKRVK-VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 92
Query: 89  VKSFQNEAHV-------LSTSVAHALSYLHHDCTLS------------------------ 117
           + +  +  H+       LS ++      + H C L                         
Sbjct: 93  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 152
Query: 118 --------IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEW 158
                   +VHRD+++ N+L+ S     + DFG ARLL       + D    P +W
Sbjct: 153 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKW 208

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 18  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 78  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 137
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 138 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 193

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           +S  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 116 MSAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 162

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 16  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 76  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 191

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           +S  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 116 MSAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 162

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 20  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 79
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 80  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 139
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 140 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 195

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 87/235 (37%)
Query: 47  EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------ 100
           E  ++  IG GG+G VY+A     +V      H  + + S  +++ + EA + +      
Sbjct: 8   ELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPN 67
Query: 101 --------------------------------------------TSVAHALSYLHHDCTL 116
                                                         +A  ++YLH +  +
Sbjct: 68  IIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIV 127
Query: 117 SIVHRDISSNNILLDSNLEAF--------VADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
            I+HRD+ S+NIL+   +E          + DFG AR           EW  T  +    
Sbjct: 128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR-----------EWHRTTKMSAA- 175
Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              G  ++ A               E+    + ++  DV+S+GV+  ++L G  P
Sbjct: 176 ---GAYAWMA--------------PEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 49/150 (32%)
Query: 88  FVKSFQNEAHVLS-----TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           F++    E  VL        +A  + YL     ++ VHRD+++ NIL++SNL   V+DFG
Sbjct: 136 FLREKDGEFSVLQLVGMLRGIAAGMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFG 192
Query: 143 TARLLHVD--------SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVE 194
            +R+L  D            P  W    T P+       ISY                  
Sbjct: 193 LSRVLEDDPEATYTTSGGKIPIRW----TAPE------AISYRKF--------------- 227
Query: 195 LAYTMVVTEKCDVYSFGVVALKVLM-GTHP 223
                  T   DV+SFG+V  +V+  G  P
Sbjct: 228 -------TSASDVWSFGIVMWEVMTYGERP 250

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 59/176 (33%)
Query: 41  LINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVV----ALKKLHQS-------ETEDSAF 88
           ++  TE   +K  +G+G +G+VYK   +P+G+ V    A+K L+++       E  D A 
Sbjct: 11  ILKETELKRVK-VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 69
Query: 89  VKSFQNEAHV-------LSTSVAHALSYLHHDCTLS------------------------ 117
           + +  +  H+       LS ++      + H C L                         
Sbjct: 70  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 129
Query: 118 --------IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEW 158
                   +VHRD+++ N+L+ S     + DFG ARLL       + D    P +W
Sbjct: 130 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKW 185

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+++ NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLAAANILVGENLVCKVADFGLARLIE 165

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 37/144 (25%)
Query: 88  FVKSFQNEAHV-----LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           F++S Q    V         VA  + YL        VHRD+++ N +LD +    VADFG
Sbjct: 113 FIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFG 169
Query: 143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTM 199
            AR    D  +R                     YY++  +  RH  +P     +E   T 
Sbjct: 170 LAR----DILDR--------------------EYYSVQQH--RHARLPVKWTALESLQTY 203
Query: 200 VVTEKCDVYSFGVVALKVLMGTHP 223
             T K DV+SFGV+  ++L    P
Sbjct: 204 RFTTKSDVWSFGVLLWELLTRGAP 227

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +   L YLH +     +HRDI + N+LL  + E  +ADFG A               LT
Sbjct: 127 EILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAG-------------QLT 170
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
           DT  + N  +G   + A               E+        K D++S G+ A+++  G 
Sbjct: 171 DTQIKRNXFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELARGE 216
Query: 222 HP 223
            P
Sbjct: 217 PP 218

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +   L YLH +     +HRDI + N+LL  + E  +ADFG A               LT
Sbjct: 112 EILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAG-------------QLT 155
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
           DT  + N  +G   + A               E+        K D++S G+ A+++  G 
Sbjct: 156 DTQIKRNXFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELARGE 201
Query: 222 HP 223
            P
Sbjct: 202 PP 203

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG AR+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLARVLEDD 200

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +   + YL     +S VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 139 GIGSGMKYLSD---MSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD 184

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +   L YLH +     +HRDI + N+LL  + E  +ADFG A               LT
Sbjct: 112 EILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAG-------------QLT 155
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
           DT  + N  +G   + A               E+        K D++S G+ A+++  G 
Sbjct: 156 DTQIKRNTFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELARGE 201
Query: 222 HP 223
            P
Sbjct: 202 PP 203

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 32/132 (24%)
Query: 94  NEAHVLST--SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           NE  + +   SV  ALSYLH+     ++HRDI S++ILL S+    ++DFG         
Sbjct: 139 NEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFG--------- 186
Query: 152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG 211
               +   ++  +P+   ++G       W   +  + +P+  E+          D++S G
Sbjct: 187 ----FCAQVSKEVPKRKXLVGT----PYWMAPEVISRLPYGTEV----------DIWSLG 228
Query: 212 VVALKVLMGTHP 223
           ++ ++++ G  P
Sbjct: 229 IMVIEMIDGEPP 240

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 109 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 155

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +   + YL     +S VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 118 GIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD 163

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 59/189 (31%)
Query: 34  GKISYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS------- 81
           G ++   ++  TE   IK  +G+G +G+VYK   +P+G+     VA+K+L ++       
Sbjct: 1   GAMALLRILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 59
Query: 82  ETEDSAFVKSFQNEAHV-------LSTSVAHALSYLHHDCTL------------------ 116
           E  D A+V +  +  HV       L+++V      +   C L                  
Sbjct: 60  EILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW 119
Query: 117 --------------SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRP 155
                          +VHRD+++ N+L+ +     + DFG A+LL       H +    P
Sbjct: 120 CVQIAEGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 179
Query: 156 YEWALTDTL 164
            +W   +++
Sbjct: 180 IKWMALESI 188

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 112 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 158

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 110 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 156

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 108 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 154

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +   + YL     +S VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 124 GIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD 169

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 16  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 76  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 191

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           + E   +  S+  A+S+LH +   +IVHRD+   NILLD N++  ++DFG
Sbjct: 199 EKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFG 245

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 16  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 76  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 191

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR------- 145
           ++E   L   +  ALSY+H   +  I+HRD+   NI +D +    + DFG A+       
Sbjct: 115 RDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLD 171
Query: 146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC 205
           +L +DS N P     +D L      IG   Y A                L  T    EK 
Sbjct: 172 ILKLDSQNLP---GSSDNLTSA---IGTAMYVATEV-------------LDGTGHYNEKI 212
Query: 206 DVYSFGVVALKVL 218
           D+YS G++  +++
Sbjct: 213 DMYSLGIIFFEMI 225

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 23  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 83  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 142
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 143 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 198

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 119 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR------- 145
           ++E   L   +  ALSY+H   +  I+HRD+   NI +D +    + DFG A+       
Sbjct: 115 RDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLD 171
Query: 146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC 205
           +L +DS N P     +D L      IG   Y A                L  T    EK 
Sbjct: 172 ILKLDSQNLP---GSSDNLTSA---IGTAMYVATEV-------------LDGTGHYNEKI 212
Query: 206 DVYSFGVVALKVL 218
           D+YS G++  +++
Sbjct: 213 DMYSLGIIFFEMI 225

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +   L YLH +     +HRDI + N+LL  + E  +ADFG A               LT
Sbjct: 132 EILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVA-------------GQLT 175
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
           DT  + N  +G   + A               E+        K D++S G+ A+++  G 
Sbjct: 176 DTQIKRNTFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELARGE 221
Query: 222 HP 223
            P
Sbjct: 222 PP 223

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 18  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 78  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 137
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 138 RRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESI 193

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 19  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 79  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 138
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 139 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 194

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 26  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 85
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 86  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 145
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 146 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 201

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHV 149
           + EA  +   VA AL +LH   T  I HRD+   NIL +S  +     + DF     + +
Sbjct: 110 EREASRVVRDVAAALDFLH---TKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKL 166
Query: 150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVT---EKCD 206
           ++S  P       T P++    G   Y A           P  VE+ +T   T   ++CD
Sbjct: 167 NNSCTPI------TTPELTTPCGSAEYMA-----------PEVVEV-FTDQATFYDKRCD 208
Query: 207 VYSFGVVALKVLMGTHP 223
           ++S GVV   +L G  P
Sbjct: 209 LWSLGVVLYIMLSGYPP 225

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 19  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 79  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 138
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 139 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 194

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 23  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 83  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 142
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 143 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 198

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 16  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 76  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 191

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 10  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 69
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 70  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 129
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 130 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 185

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 18  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 78  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 137
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 138 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 193

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 19  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 79  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 138
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 139 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 194

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 41  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 100
Query: 95  EAHV-------LSTSVAHALSYLHHDCTLS------------------------------ 117
             HV       L+++V      +   C L                               
Sbjct: 101 NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 160
Query: 118 --IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 161 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 216

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 22  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 81
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V      +   C L                               
Sbjct: 82  NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 141
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 142 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 197

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
           +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 171

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
           +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 144 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 188

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
           +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 171

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            V   + YL     L  VHRD+++ N+L+DSNL   V+DFG +R+L  D
Sbjct: 159 GVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            V   + YL     L  VHRD+++ N+L+DSNL   V+DFG +R+L  D
Sbjct: 159 GVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 44/151 (29%)
Query: 76  KKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DS 132
           KK H SETE S  ++            +  A+S++H    + +VHRD+   N+L    + 
Sbjct: 99  KKKHFSETEASYIMRK-----------LVSAVSHMH---DVGVVHRDLKPENLLFTDEND 144
Query: 133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFH 192
           NLE  + DFG ARL   D  N+P +                         F  H   P  
Sbjct: 145 NLEIKIIDFGFARLKPPD--NQPLKTPC----------------------FTLHYAAP-- 178
Query: 193 VELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            EL       E CD++S GV+   +L G  P
Sbjct: 179 -ELLNQNGYDESCDLWSLGVILYTMLSGQVP 208

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 285 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 331

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 285 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 331

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 285 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 331

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 67  LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
           LP G +    + H++  + S  +        + S+ +   + YL    +   VHRD+++ 
Sbjct: 92  LPSGCLRDFLQRHRARLDASRLL--------LYSSQICKGMEYLG---SRRCVHRDLAAR 140
Query: 127 NILLDSNLEAFVADFGTARLLHVD 150
           NIL++S     +ADFG A+LL +D
Sbjct: 141 NILVESEAHVKIADFGLAKLLPLD 164

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 200

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 153 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 198

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           ++  +A  ++Y+     ++ VHRD+ + NIL+  NL   VADFG ARL+ 
Sbjct: 368 MAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE 414

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG  R+L  D
Sbjct: 155 GIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
            +A AL +LH   +L I++RD+   NILLD      + DFG ++   +D   + Y +   
Sbjct: 134 ELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKAYSFC-- 187
Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
                     G + Y A     +R +              T+  D +SFGV+  ++L GT
Sbjct: 188 ----------GTVEYMAPEVVNRRGH--------------TQSADWWSFGVLMFEMLTGT 223
Query: 222 HP 223
            P
Sbjct: 224 LP 225

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 30/123 (24%)
Query: 101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL 160
             +A AL +LH   +L I++RD+   NILLD      + DFG ++   +D   + Y +  
Sbjct: 134 AELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKAYSFC- 188
Query: 161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG 220
                      G + Y A     +R +              T+  D +SFGV+  ++L G
Sbjct: 189 -----------GTVEYMAPEVVNRRGH--------------TQSADWWSFGVLMFEMLTG 223
Query: 221 THP 223
           T P
Sbjct: 224 TLP 226

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 30/123 (24%)
Query: 101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL 160
             +A AL +LH   +L I++RD+   NILLD      + DFG ++   +D   + Y +  
Sbjct: 133 AELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKAYSFC- 187
Query: 161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG 220
                      G + Y A     +R +              T+  D +SFGV+  ++L G
Sbjct: 188 -----------GTVEYMAPEVVNRRGH--------------TQSADWWSFGVLMFEMLTG 222
Query: 221 THP 223
           T P
Sbjct: 223 TLP 225

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 67  LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
           LP G +    + H++  + S  +        + S+ +   + YL    +   VHRD+++ 
Sbjct: 96  LPSGCLRDFLQRHRARLDASRLL--------LYSSQICKGMEYLG---SRRCVHRDLAAR 144
Query: 127 NILLDSNLEAFVADFGTARLLHVD 150
           NIL++S     +ADFG A+LL +D
Sbjct: 145 NILVESEAHVKIADFGLAKLLPLD 168

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 67  LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
           LP G +    + H++  + S  +        + S+ +   + YL    +   VHRD+++ 
Sbjct: 108 LPSGCLRDFLQRHRARLDASRLL--------LYSSQICKGMEYLG---SRRCVHRDLAAR 156
Query: 127 NILLDSNLEAFVADFGTARLLHVD 150
           NIL++S     +ADFG A+LL +D
Sbjct: 157 NILVESEAHVKIADFGLAKLLPLD 180

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP 155
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+   P
Sbjct: 117 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAP 170

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 30/121 (24%)
Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +   L YLH +     +HRDI + N+LL    +  +ADFG A               LTD
Sbjct: 129 ILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAG-------------QLTD 172
Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
           T  + N  +G   + A               E+        K D++S G+ A+++  G  
Sbjct: 173 TQIKRNTFVGTPFWMA--------------PEVIQQSAYDSKADIWSLGITAIELAKGEP 218
Query: 223 P 223
           P
Sbjct: 219 P 219

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 67  LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
           LP G +    + H++  + S  +        + S+ +   + YL    +   VHRD+++ 
Sbjct: 95  LPSGCLRDFLQRHRARLDASRLL--------LYSSQICKGMEYLG---SRRCVHRDLAAR 143
Query: 127 NILLDSNLEAFVADFGTARLLHVD 150
           NIL++S     +ADFG A+LL +D
Sbjct: 144 NILVESEAHVKIADFGLAKLLPLD 167

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 83/240 (34%), Gaps = 89/240 (37%)
Query: 44  ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKL----HQSETEDSAFVKSFQNEAHV 98
           A  E   +  IG GG+G V+K  L  D  VVA+K L     + ETE     + FQ E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 99  LST--------------------------------------------------SVAHALS 108
           +S                                                    +A  + 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIE 136
Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLE-----AFVADFGTARLLHVDSSNRPYEWALTDT 163
           Y+ +     IVHRD+ S NI L S  E     A VADFGT++                 +
Sbjct: 137 YMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQ----------------QS 179
Query: 164 LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           +  V+ ++G   + A           P  +  A     TEK D YSF ++   +L G  P
Sbjct: 180 VHSVSGLLGNFQWMA-----------PETIG-AEEESYTEKADTYSFAMILYTILTGEGP 227

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP 155
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+   P
Sbjct: 118 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAP 171

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     + +G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 23  EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 95  EAHV-------LSTSVAHALSYLHHDCTL------------------------------- 116
             HV       L+++V   +  +   C L                               
Sbjct: 83  NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 142
Query: 117 -SIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 143 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 198

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            +A  + YL     +  VHRD+++ NIL++SNL   V+DFG +R++  D
Sbjct: 153 GIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDD 198

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 114 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 171 KFPIKWTAPESL 182

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 58/176 (32%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 16  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 95  EAHVLS------TSVAHALSYL------------HHDCTLS------------------- 117
             HV        TS    ++ L            H D   S                   
Sbjct: 76  NPHVCRLLGICLTSTVQLITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
Query: 118 --IVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
             +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 191

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 56/158 (35%)
Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSET--------EDSAFVKSFQ 93
           N + +F +K  +G G YG V  A   P G++VA+KK+   +          +   +K F+
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 94  NEA-------------------------------HVLSTSVA-------------HALSY 109
           +E                                 V+ST +               A+  
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKV 127
Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           LH     +++HRD+  +N+L++SN +  V DFG AR++
Sbjct: 128 LHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARII 162

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 114 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGA 170
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 171 KFPIKWTAPESL 182

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 92  FQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            +  A   +  +A AL YLH   +L+IV+RD+   NILLDS     + DFG  +
Sbjct: 137 LEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCK 187

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD 150
            ++  + YL     +  VHRD+++ NIL++SNL   V+DFG +R+L  D
Sbjct: 132 GISAGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD 177

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 56/158 (35%)
Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSET--------EDSAFVKSFQ 93
           N + +F +K  +G G YG V  A   P G++VA+KK+   +          +   +K F+
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 94  NEA-------------------------------HVLSTSVA-------------HALSY 109
           +E                                 V+ST +               A+  
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKV 127
Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           LH     +++HRD+  +N+L++SN +  V DFG AR++
Sbjct: 128 LHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARII 162

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 129 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 185
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 186 KFPIKWTAPESL 197

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 56/158 (35%)
Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSET--------EDSAFVKSFQ 93
           N + +F +K  +G G YG V  A   P G++VA+KK+   +          +   +K F+
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 94  NEA-------------------------------HVLSTSVA-------------HALSY 109
           +E                                 V+ST +               A+  
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKV 127
Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           LH     +++HRD+  +N+L++SN +  V DFG AR++
Sbjct: 128 LHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARII 162

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 117 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 174 KFPIKWTAPESL 185

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 114 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 171 KFPIKWTAPESL 182

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 121 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 178 KFPIKWTAPESL 189

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           ++E       +  A+ Y H      IVHRD+   N+LLD NL   +ADFG + ++
Sbjct: 107 EDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIM 158

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 135 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGA 191
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 192 KFPIKWTAPESL 203

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 121 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 178 KFPIKWTAPESL 189

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 120 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 177 KFPIKWTAPESL 188

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 121 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 178 KFPIKWTAPESL 189

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           + EA  L   +  A+ Y H      +VHRD+   N+LLD+++ A +ADFG + ++
Sbjct: 110 EMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM 161

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 64/179 (35%)
Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGK----VVALKKLHQS-------ETEDSAFVKSFQN 94
           EF     +G+G +G+VYK   +P+G+     VA+K+L ++       E  D A+V +  +
Sbjct: 17  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 76
Query: 95  EAHVLS------------------------------------------TSVAHALSYLHH 112
             HV                                              +A  ++YL  
Sbjct: 77  NPHVCRLLGICLTSTVQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 136
Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL-------HVDSSNRPYEWALTDTL 164
                +VHRD+++ N+L+ +     + DFG A+LL       H +    P +W   +++
Sbjct: 137 R---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 192

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 118 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 175 KFPIKWTAPESL 186

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 121 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 178 KFPIKWTAPESL 189

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 93  QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           + EA  L   +  A+ Y H      +VHRD+   N+LLD+++ A +ADFG + ++
Sbjct: 110 EMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM 161

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 99  LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------S 152
           ++T ++ A+ YL      + +HRD+++ N L+  N    VADFG +RL+  D+      +
Sbjct: 116 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 153 NRPYEWALTDTL 164
             P +W   ++L
Sbjct: 173 KFPIKWTAPESL 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-40
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-25
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-22
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-22
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-22
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-20
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-19
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-13
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-19
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	7e-19
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-18
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-18
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-09
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-18
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-17
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-17
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-16
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-06
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	6e-15
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-14
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-14
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-14
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-14
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-14
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-09
2dyl_A	318	Dual specificity mitogen-activated protein kinase	8e-14
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-13
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-13
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-12
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-12
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-12
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-12
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	9e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-11
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-11
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	9e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-10
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-10
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	4e-10
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	5e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	9e-10
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	9e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-09
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-09
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	7e-09
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	9e-09
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	9e-09
3uqc_A	286	Probable conserved transmembrane protein; structur	9e-09
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-08
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-08
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-08
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-08
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-08
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	5e-08
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	5e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-08
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	9e-08
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	9e-08
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-05
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	4e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	4e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	4e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-07
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	6e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	7e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	9e-07
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-06
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	4e-06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	7e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	8e-06
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	8e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	9e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	9e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	9e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-05
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-05
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-05
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	6e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	8e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	7e-05
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	8e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	8e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	9e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	9e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	9e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-04
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	3e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-04
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-04
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	4e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	5e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	6e-04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	6e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	7e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	7e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  141 bits (358), Expect = 1e-40
 Identities = 65/244 (26%), Positives = 91/244 (37%), Gaps = 93/244 (38%)

Query: 37  SYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEA 96
           S  +L  A++ F  K  +G GG+G VYK  L DG +VA+K+L   E         FQ E 
Sbjct: 21  SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL--KEERTQGGELQFQTEV 78

Query: 97  HVLST-----------------------------SVAHAL-------------------- 107
            ++S                              SVA  L                    
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIAL 138

Query: 108 ------SYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL-----HVDSSNRPY 156
                 +YLH  C   I+HRD+ + NILLD   EA V DFG A+L+     HV  +    
Sbjct: 139 GSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV--TTA-- 194

Query: 157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK 216
                        + G I + A           P   E   T   +EK DV+ +GV+ L+
Sbjct: 195 -------------VRGTIGHIA-----------P---EYLSTGKSSEKTDVFGYGVMLLE 227

Query: 217 VLMG 220
           ++ G
Sbjct: 228 LITG 231

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  100 bits (251), Expect = 3e-25
 Identities = 62/273 (22%), Positives = 94/273 (34%), Gaps = 110/273 (40%)

Query: 37  SYEDLINATEEFHIKYC------IGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-V 89
           S+ +L N T  F  +        +G GG+G VYK  + +   VA+KKL       +    
Sbjct: 16  SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELK 74

Query: 90  KSFQNEAHVLST-----------------------------SVAHAL------------- 107
           + F  E  V++                              S+   L             
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134

Query: 108 ------------SYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS---- 151
                       ++LH +     +HRDI S NILLD    A ++DFG AR     +    
Sbjct: 135 RCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVM 191

Query: 152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG 211
           ++R               I+G  +Y A           P   E A    +T K D+YSFG
Sbjct: 192 TSR---------------IVGTTAYMA-----------P---E-ALRGEITPKSDIYSFG 221

Query: 212 VVALKVLMGTHPGELLSSLSS--SSGPKIMLID 242
           VV L         E+++ L +        +L+D
Sbjct: 222 VVLL---------EIITGLPAVDEHREPQLLLD 245

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 97/231 (41%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSA-FVKSFQNEAHV------ 98
            E  ++  IG GG+G VY+A    G  VA+K       ED +  +++ + EA +      
Sbjct: 7   AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKH 65

Query: 99  --------------------------------------------LSTSVAHALSYLHHDC 114
                                                        +  +A  ++YLH + 
Sbjct: 66  PNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEA 125

Query: 115 TLSIVHRDISSNNILLDSNLEAF--------VADFGTARLLHVDSSNR---PYEWALTDT 163
            + I+HRD+ S+NIL+   +E          + DFG AR  H  +       Y W     
Sbjct: 126 IVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAW----- 180

Query: 164 LPQVNKIIGCISYYALWFYFQRHNLM-PFHVELAYTMVVTEKCDVYSFGVV 213
                                    M P   E+    + ++  DV+S+GV+
Sbjct: 181 -------------------------MAP---EVIRASMFSKGSDVWSYGVL 203

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 50/230 (21%), Positives = 71/230 (30%), Gaps = 93/230 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAF----VKSFQNEAHVLS 100
            E   +  IG GG+G V+K   + D  VVA+K L   ++E         + FQ E  ++S
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 101 T---------------------------SVAHAL-----------------------SYL 110
                                        + H L                        Y+
Sbjct: 79  NLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM 138

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAF-----VADFGTARLLHVDSSNRP--YEWALTDT 163
            +     IVHRD+ S NI L S  E       VADFG ++      S     ++W     
Sbjct: 139 QN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQW----M 193

Query: 164 LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
            P+   I      Y                        TEK D YSF ++
Sbjct: 194 APET--IGAEEESY------------------------TEKADTYSFAMI 217

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 91.6 bits (228), Expect = 5e-22
 Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 101/263 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEA--------- 96
           +E  ++  +G G +G V KA+    K VA+K++           K+F  E          
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESER-----KAFIVELRQLSRVNHP 61

Query: 97  --------------------------HVLSTS-----------------VAHALSYLHHD 113
                                     +VL  +                  +  ++YLH  
Sbjct: 62  NIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSM 121

Query: 114 CTLSIVHRDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRP--YEW-ALTDTLPQVNK 169
              +++HRD+   N+LL +      + DFGTA  +    +N      W A     P+V  
Sbjct: 122 QPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMA-----PEV-- 174

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS 229
                +Y                         +EKCDV+S+G++  +V+    P + +  
Sbjct: 175 -FEGSNY-------------------------SEKCDVFSWGIILWEVITRRKPFDEI-- 206

Query: 230 LSSSSGPKIMLIDVLDQRLSPPV 252
                GP   ++  +     PP+
Sbjct: 207 ----GGPAFRIMWAVHNGTRPPL 225

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 86.9 bits (216), Expect = 3e-20
 Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 87/225 (38%)

Query: 54  IGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEA---------HVLS- 100
           +G GG G VY+AE  D    ++VALK + ++ + D  F    Q EA         HV+  
Sbjct: 42  VGRGGMGDVYEAE--DTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPI 99

Query: 101 -----------------------------------------TSVAHALSYLHHDCTLSIV 119
                                                      +  AL   H        
Sbjct: 100 HDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GAT 156

Query: 120 HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD-TLPQVNKIIGCISYYA 178
           HRD+   NIL+ ++  A++ DFG A              A TD  L Q+   +G + Y A
Sbjct: 157 HRDVKPENILVSADDFAYLVDFGIAS-------------ATTDEKLTQLGNTVGTLYYMA 203

Query: 179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                      P   E       T + D+Y+   V  + L G+ P
Sbjct: 204 -----------P---ERFSESHATYRADIYALTCVLYECLTGSPP 234

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 42/224 (18%), Positives = 70/224 (31%), Gaps = 78/224 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
            +      +G G +G   K      G+V+ +K+L + + E     ++F  E  V+   + 
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEET---QRTFLKEVKVMR-CLE 65

Query: 105 HA---------------------------LSYLH-HDCTLS------------------- 117
           H                               +   D                       
Sbjct: 66  HPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH 125

Query: 118 ---IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
              I+HRD++S+N L+  N    VADFG ARL+ VD   +P          +  +     
Sbjct: 126 SMNIIHRDLNSHNCLVRENKNVVVADFGLARLM-VDEKTQPEGLRSLKKPDRKKRYTVVG 184

Query: 175 SYY-----ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           + Y      +           +           EK DV+SFG+V
Sbjct: 185 NPYWMAPEMI-----NGR--SY----------DEKVDVFSFGIV 211

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 40/126 (31%)

Query: 104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL------HVDSSNRPYE 157
           A  L YLH      I+HRD+ S NILLD N    + DFG ++        H+  S     
Sbjct: 149 ARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL--STV--- 200

Query: 158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV 217
                       + G + Y     YF +  L             TEK DVYSFGVV  +V
Sbjct: 201 ------------VKGTLGYIDPE-YFIKGRL-------------TEKSDVYSFGVVLFEV 234

Query: 218 LMGTHP 223
           L     
Sbjct: 235 LCARSA 240

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 17  NSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALK 76
           NS        + V     ++   DL  AT  F  K+ IG G +G VYK  L DG  VALK
Sbjct: 10  NSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69

Query: 77  KL----HQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHH 112
           +      Q   E       F+ E   LS           H
Sbjct: 70  RRTPESSQGIEE-------FETEIETLSF--------CRH 94

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 82.7 bits (205), Expect = 7e-19
 Identities = 46/226 (20%), Positives = 72/226 (31%), Gaps = 93/226 (41%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEA--------- 96
            +  +   IG+G +G+VYK +   G V A+K L+         +++F+NE          
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNV-TAPTPQQLQAFKNEVGVLRKTRHV 80

Query: 97  ------------------------------HVLSTS------------VAHALSYLHHDC 114
                                         H   T              A  + YLH   
Sbjct: 81  NILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH--- 137

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR-------PYEWALTDTLPQV 167
             SI+HRD+ SNNI L  +    + DFG A      S +           W      P+V
Sbjct: 138 AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILW----MAPEV 193

Query: 168 NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                           +  +  P+          + + DVY+FG+V
Sbjct: 194 ---------------IRMQDSNPY----------SFQSDVYAFGIV 214

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 52/244 (21%), Positives = 76/244 (31%), Gaps = 98/244 (40%)

Query: 31  NYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK 90
            + G +  +D+     + +IK  IG G +G+V++AE   G  VA+K L + +   +  V 
Sbjct: 22  YFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILME-QDFHAERVN 79

Query: 91  SFQNEAHVLSTSVAHALSYLHHD--------CT----LSIV------------------- 119
            F  E  ++          L H          T    LSIV                   
Sbjct: 80  EFLREVAIMKR--------LRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAR 131

Query: 120 ------------------------------HRDISSNNILLDSNLEAFVADFGTARLLHV 149
                                         HR++ S N+L+D      V DFG +RL   
Sbjct: 132 EQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA- 190

Query: 150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYS 209
                        T        G   + A           P   E+       EK DVYS
Sbjct: 191 ------------STFLSSKSAAGTPEWMA-----------P---EVLRDEPSNEKSDVYS 224

Query: 210 FGVV 213
           FGV+
Sbjct: 225 FGVI 228

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 33/137 (24%)

Query: 99  LSTSVAHALSYLHHD-------CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           ++ ++A  L+YLH D          +I HRDI S N+LL +NL A +ADFG A       
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185

Query: 152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMP---FHVELAYTMVVTEKCDVY 208
           S         DT  QV    G   Y            M        + +      + D+Y
Sbjct: 186 S-------AGDTHGQV----GTRRY------------MAPEVLEGAINFQRDAFLRIDMY 222

Query: 209 SFGVVALKVLMGTHPGE 225
           + G+V  ++       +
Sbjct: 223 AMGLVLWELASRCTAAD 239

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 36  ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           +  E+L   +    +      G +G V+KA+    + VA+K     +       +S+QNE
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDK------QSWQNE 66

Query: 96  AHVLSTSVAHALSYLHHD 113
             V      ++L  + H+
Sbjct: 67  YEV------YSLPGMKHE 78

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 90/234 (38%)

Query: 36  ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQ-- 93
           ++    I+  ++ +    +     G ++K     G  + +K L   +   +   + F   
Sbjct: 1   MNKHSGIDF-KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDW-STRKSRDFNEE 57

Query: 94  ---------------------------------------------NEAHVLSTS------ 102
                                                            V+  S      
Sbjct: 58  CPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFA 117

Query: 103 --VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW-A 159
             +A  +++LH      I    ++S ++++D ++ A ++                  W A
Sbjct: 118 LDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVA 176

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                P+                 Q+                    D++SF V+
Sbjct: 177 -----PEA---------------LQKKPEDTN----------RRSADMWSFAVL 200

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 78.0 bits (193), Expect = 4e-17
 Identities = 53/222 (23%), Positives = 79/222 (35%), Gaps = 81/222 (36%)

Query: 54  IGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEAH------------V 98
           +G GG  +VY AE  D      VA+K +     E    +K F+ E H            +
Sbjct: 19  LGGGGMSTVYLAE--DTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSM 76

Query: 99  LSTSVAHALSY--------------------LHHDCTLSI----------------VHRD 122
           +         Y                    L  D  ++                 VHRD
Sbjct: 77  IDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRD 136

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD-TLPQVNKIIGCISYYALWF 181
           I   NIL+DSN    + DFG A+             AL++ +L Q N ++G + Y++   
Sbjct: 137 IKPQNILIDSNKTLKIFDFGIAK-------------ALSETSLTQTNHVLGTVQYFS--- 180

Query: 182 YFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                   P   E A      E  D+YS G+V  ++L+G  P
Sbjct: 181 --------P---EQAKGEATDECTDIYSIGIVLYEMLVGEPP 211

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 78.2 bits (193), Expect = 4e-17
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 68/218 (31%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH 105
           E+  I   IG G +G VY      G+ VA++ +     ++   +K+F+ E         H
Sbjct: 33  EQLEIGELIGKGRFGQVYHGRW-HGE-VAIRLIDIER-DNEDQLKAFKREVMAYR-QTRH 88

Query: 106 A---------------------------LSYLH-HDCTLS-------------------- 117
                                        S +      L                     
Sbjct: 89  ENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA 148

Query: 118 --IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
             I+H+D+ S N+  D N +  + DFG   +  V                ++    G + 
Sbjct: 149 KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGV--------LQAGRREDKLRIQNGWLC 199

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           + A     ++ +      +L +    ++  DV++ G +
Sbjct: 200 HLAP-EIIRQLSPDTEEDKLPF----SKHSDVFALGTI 232

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)

Query: 99  LSTSVAHALSYLHHD-----CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
           +  S+A  L++LH +        +I HRD+ S NIL+  N +  +AD G A +    +  
Sbjct: 110 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST-- 167

Query: 154 RPYEWALTDTLPQVNKIIGCISYYA---LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF 210
                         N  +G   Y A   L        +     +        ++ D+++F
Sbjct: 168 -------NQLDVGNNPRVGTKRYMAPEVL-----DETIQVDCFD------SYKRVDIWAF 209

Query: 211 GVV 213
           G+V
Sbjct: 210 GLV 212

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 45  TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
             +  +  C+G G YG V++     G+ VA+K     +       KS+  E  + +T + 
Sbjct: 7   ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD------EKSWFRETELYNTVM- 58

Query: 105 HALSYLHHDC 114
                L H+ 
Sbjct: 59  -----LRHEN 63

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 99  LSTSVAHALSYLH-----HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
           L+ S    L +LH          +I HRD+ S NIL+  N    +AD G A     D++ 
Sbjct: 139 LAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTN- 197

Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                     +P  N  +G   Y       +  N   F              D+YSFG++
Sbjct: 198 -------EVDIPP-NTRVGTKRYMPPEVLDESLNRNHFQ--------SYIMADMYSFGLI 241

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH 105
           ++  +   IG G YG V+  +   G+ VA+K    +E        S+  E  +  T +  
Sbjct: 37  KQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEA------SWFRETEIYQTVL-- 87

Query: 106 ALSYLHHDCTL 116
               + H+  L
Sbjct: 88  ----MRHENIL 94

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 81/228 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE----------------DSAF 88
           ++F     +G G  G V+K    P G V+A K +H                     +S +
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 89  V----KSFQNEAHV-----------------------------LSTSVAHALSYLHHDCT 115
           +     +F ++  +                             +S +V   L+YL     
Sbjct: 93  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK-- 150

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
             I+HRD+  +NIL++S  E  + DFG +  L +DS                N  +G  S
Sbjct: 151 HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-IDS--------------MANSFVGTRS 195

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           Y +           P   E       + + D++S G+  +++ +G +P
Sbjct: 196 YMS-----------P---ERLQGTHYSVQSDIWSMGLSLVEMAVGRYP 229

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 28/123 (22%)

Query: 99  LSTSVAHALSYLHHD-----CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
           L+ S A  L++LH +        +I HRD+ S NIL+  N    +AD G A      +  
Sbjct: 144 LALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD- 202

Query: 154 RPYEWALTDTLPQVNKIIGCISYYA---LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF 210
                  T  +   ++ +G   Y A   L       ++   H E        ++ D+Y+ 
Sbjct: 203 -------TIDIAPNHR-VGTKRYMAPEVL-----DDSINMKHFE------SFKRADIYAM 243

Query: 211 GVV 213
           G+V
Sbjct: 244 GLV 246

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH 105
               ++  IG G +G V++ +   G+ VA+K     E       +S+  EA +      +
Sbjct: 42  RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE------ERSWFREAEI------Y 88

Query: 106 ALSYLHHDCTL 116
               L H+  L
Sbjct: 89  QTVMLRHENIL 99

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 43/235 (18%), Positives = 73/235 (31%), Gaps = 88/235 (37%)

Query: 47  EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH- 105
            F  K  +G G  G++    + D + VA+K++                E  +L  S  H 
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE------CFSFADREVQLLRESDEHP 78

Query: 106 ---------------------------------------------------ALSYLHHDC 114
                                                               L++LH   
Sbjct: 79  NVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHS-- 136

Query: 115 TLSIVHRDISSNNILL-----DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNK 169
            L+IVHRD+  +NIL+        ++A ++DFG  + L V             +  + + 
Sbjct: 137 -LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH----------SFSRRSG 185

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGTHP 223
           + G   + A           P  +        T   D++S G V   V+  G+HP
Sbjct: 186 VPGTEGWIA-----------PEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHP 229

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 39/153 (25%), Positives = 53/153 (34%), Gaps = 56/153 (36%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           +  E F     IG G +G V+K  +    KVVA+K +   E ED   ++  Q E  VLS 
Sbjct: 19  DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDE--IEDIQQEITVLSQ 76

Query: 102 -----------------------------SVAH---------------------ALSYLH 111
                                        S                         L YLH
Sbjct: 77  CDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH 136

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
            +     +HRDI + N+LL  + E  +ADFG A
Sbjct: 137 SE---KKIHRDIKAANVLLSEHGEVKLADFGVA 166

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 48/225 (21%), Positives = 72/225 (32%), Gaps = 81/225 (36%)

Query: 54  IGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEAH------------- 97
           +G GG   V+ A   D    + VA+K L      D +F   F+ EA              
Sbjct: 20  LGFGGMSEVHLAR--DLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAV 77

Query: 98  ----------------------------VLST----SVAHALSYLHHDCT-LSIVH---- 120
                                       ++ T    +   A+  +   C  L+  H    
Sbjct: 78  YDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGI 137

Query: 121 --RDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA 178
             RD+   NI++ +     V DFG AR +    +          ++ Q   +IG   Y +
Sbjct: 138 IHRDVKPANIMISATNAVKVMDFGIARAIADSGN----------SVTQTAAVIGTAQYLS 187

Query: 179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                      P   E A    V  + DVYS G V  +VL G  P
Sbjct: 188 -----------P---EQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 40/233 (17%), Positives = 64/233 (27%), Gaps = 96/233 (41%)

Query: 48  FHIKYCIGTGGYGSVYKAE---LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
           + +K CI  GG G +Y A    + +G+ V LK L  S   D+        E   L+    
Sbjct: 82  YEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHS--GDAEAQAMAMAERQFLAEVVH 138

Query: 102 -----------------------------------------SVAHAL----------SYL 110
                                                     VA A+          SYL
Sbjct: 139 PSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYL 198

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
           H    + +V+ D+   NI+L    +  + D G                 +         +
Sbjct: 199 HS---IGLVYNDLKPENIMLTEE-QLKLIDLGAVS-------------RINSF----GYL 237

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            G   + A           P   E+  T   T   D+Y+ G     + +    
Sbjct: 238 YGTPGFQA-----------P---EIVRTG-PTVATDIYTVGRTLAALTLDLPT 275

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 69.1 bits (169), Expect = 7e-14
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 99  LSTSVAHALSYLHHD------CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
           L+ SV   L+YLH +         +I HRD++S N+L+ ++    ++DFG +  L  +  
Sbjct: 116 LAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL 175

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYA---LWFYFQRHNLMPFHVELAYTMVVTEKCDVYS 209
            RP E             +G I Y A   L       +               ++ D+Y+
Sbjct: 176 VRPGEEDNAA-----ISEVGTIRYMAPEVLEGAVNLRDXESA----------LKQVDMYA 220

Query: 210 FGVVALKVLMGT 221
            G++  ++ M  
Sbjct: 221 LGLIYWEIFMRC 232

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 36  ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
            +  +     +   +   IG G YG+VYK  L D + VA+K    +        ++F NE
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR------QNFINE 55

Query: 96  AHVLSTSVAHALSYLHHD 113
            ++      + +  + HD
Sbjct: 56  KNI------YRVPLMEHD 67

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 80/231 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETE-----------------DSA 87
            +      +G+G  G V+K      G V+A+K++ +S  +                 D  
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84

Query: 88  FV----KSFQNEAHV-----------------------------LSTSVAHALSYLHHDC 114
           ++     +F     V                             ++ ++  AL YL    
Sbjct: 85  YIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK- 143

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
              ++HRD+  +NILLD   +  + DFG +  L VD   +             ++  GC 
Sbjct: 144 -HGVIHRDVKPSNILLDERGQIKLCDFGISGRL-VDDKAK-------------DRSAGCA 188

Query: 175 SYYALWFYFQRHNLMP--FHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           +Y A           P               + DV+S G+  +++  G  P
Sbjct: 189 AYMA-----------PERIDPPDPTKPDYDIRADVWSLGISLVELATGQFP 228

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 55/152 (36%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS- 102
            + F     IG G +G+VY A ++ + +VVA+KK+  S  + +   +    E   L    
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 103 --------------------------------------------------VAHALSYLHH 112
                                                                 L+YLH 
Sbjct: 113 HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 172

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
               +++HRD+ + NILL       + DFG+A
Sbjct: 173 H---NMIHRDVKAGNILLSEPGLVKLGDFGSA 201

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 93/239 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETE-----------------DSA 87
           E+      IG G YGSV K    P G+++A+K++  +  E                 D  
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 88  FV----KSFQNEAHV---------------------------------LSTSVAHALSYL 110
           ++     +   E                                    ++ +   AL++L
Sbjct: 82  YIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL 141

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
             +  L I+HRDI  +NILLD +    + DFG +  L VDS  +              + 
Sbjct: 142 KEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQL-VDSIAK-------------TRD 185

Query: 171 IGCISYYALWFYFQRHNLM------PFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            GC  Y            M      P      Y      + DV+S G+   ++  G  P
Sbjct: 186 AGCRPY------------MAPERIDPSASRQGY----DVRSDVWSLGITLYELATGRFP 228

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 42/235 (17%), Positives = 64/235 (27%), Gaps = 75/235 (31%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETE-------------------- 84
           + +     +G GG+  V   E L DG   ALK++   E +                    
Sbjct: 29  KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNI 88

Query: 85  ----DSAFVKSFQN------------------------------EAHVLS--TSVAHALS 108
                    +                                  E  +L     +   L 
Sbjct: 89  LRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE 148

Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
            +H        HRD+   NILL    +  + D G+     +          L D   Q  
Sbjct: 149 AIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQR- 204

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                ISY A           P    +    V+ E+ DV+S G V   ++ G  P
Sbjct: 205 ---CTISYRA-----------PELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGP 245

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 43/238 (18%), Positives = 82/238 (34%), Gaps = 92/238 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETE-----------------DSA 87
           ++      +G G YG V K   +P G+++A+K++  +                    D  
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 88  FV----KSFQNEAHV--------------------------------LSTSVAHALSYLH 111
           F      +   E  V                                ++ S+  AL +LH
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH 126

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
               LS++HRD+  +N+L+++  +  + DFG +  L VD   +             +   
Sbjct: 127 SK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYL-VDDVAK-------------DIDA 170

Query: 172 GCISYYALWFYFQRHNLM------PFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           GC  Y            M      P   +  Y++    K D++S G+  +++ +   P
Sbjct: 171 GCKPY------------MAPERINPELNQKGYSV----KSDIWSLGITMIELAILRFP 212

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 49/237 (20%), Positives = 77/237 (32%), Gaps = 86/237 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLH-----QSETEDS------------- 86
           E++ + Y IGTG YG   K     DGK++  K+L      ++E +               
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 87  ---AFVKSFQN---------------------------------EAHVLS--TSVAHALS 108
               +     +                                 E  VL   T +  AL 
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 125

Query: 109 YLH--HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQ 166
             H   D   +++HRD+   N+ LD      + DFG AR+L+ D+S          T   
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS-------FAKT--- 175

Query: 167 VNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
               +G   Y +           P   E    M   EK D++S G +  ++     P
Sbjct: 176 ---FVGTPYYMS-----------P---EQMNRMSYNEKSDIWSLGCLLYELCALMPP 215

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 44/231 (19%), Positives = 73/231 (31%), Gaps = 83/231 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLH-----QSETEDS------------- 86
           E++     IG G +G     +   DG+   +K+++       E E+S             
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 87  ---AFVKSFQN-----------------------------EAHVLS--TSVAHALSYLHH 112
               + +SF+                              E  +L     +  AL ++H 
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH- 142

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                I+HRDI S NI L  +    + DFG AR+             L  T+      IG
Sbjct: 143 --DRKILHRDIKSQNIFLTKDGTVQLGDFGIARV-------------LNSTVELARACIG 187

Query: 173 CISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              Y +           P   E+        K D+++ G V  ++    H 
Sbjct: 188 TPYYLS-----------P---EICENKPYNNKSDIWALGCVLYELCTLKHA 224

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 59/153 (38%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS- 102
            E + I   +G G +G VYKA     G + A K +     E+   ++ +  E  +L+T  
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE---LEDYIVEIEILATCD 74

Query: 103 ---------------------------------------------------VAHALSYLH 111
                                                              +  AL++LH
Sbjct: 75  HPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH 134

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
                 I+HRD+ + N+L+    +  +ADFG +
Sbjct: 135 SK---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 45/226 (19%), Positives = 69/226 (30%), Gaps = 86/226 (38%)

Query: 51  KYCIGTGGYGSVYKA-ELPDGKVVALK------------------------KLHQSETED 85
           +  +G G +G V++  +   G   A+K                         L+ +  E 
Sbjct: 63  QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREG 122

Query: 86  ---------------SAFVKSFQ--NEAHVLS--TSVAHALSYLHHDCTLSIVHRDISSN 126
                             +K      E   L         L YLH      I+H D+ ++
Sbjct: 123 PWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKAD 179

Query: 127 NILLDSN-LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQR 185
           N+LL S+   A + DFG A  L  D   +        +L   + I G             
Sbjct: 180 NVLLSSDGSRAALCDFGHALCLQPDGLGK--------SLLTGDYIPG------------- 218

Query: 186 HNLMPFHVELAYTM---VVTE-----KCDVYSFGVVALKVLMGTHP 223
                 H      M   VV       K D++S   + L +L G HP
Sbjct: 219 ---TETH------MAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP 255

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 28/155 (18%), Positives = 41/155 (26%), Gaps = 57/155 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           + F     +G G YG V+K     DG++ A+K+   S             E         
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRS-MSPFRGPKDRARKLAEVGSHEKVGQ 115

Query: 105 H----------------------------------------------------ALSYLHH 112
           H                                                    AL++LH 
Sbjct: 116 HPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH- 174

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
             +  +VH D+   NI L       + DFG    L
Sbjct: 175 --SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 100/230 (43%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS- 102
            +++     IG G  G+VY A ++  G+ VA+++++  +       +   NE  V+  + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENK 75

Query: 103 -------------------------------------------------VAHALSYLHHD 113
                                                               AL +LH  
Sbjct: 76  NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 133

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            +  ++HRDI S+NILL  +    + DFG                 +T    + + ++G 
Sbjct: 134 -SNQVIHRDIKSDNILLGMDGSVKLTDFGFCA-------------QITPEQSKRSTMVG- 178

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTM---VVTE-----KCDVYSFGVVAL 215
                           P      Y M   VVT      K D++S G++A+
Sbjct: 179 ---------------TP------YWMAPEVVTRKAYGPKVDIWSLGIMAI 207

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 70/179 (39%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS- 102
                    IG G  G V  A E   G+ VA+K +   + +     +   NE  ++    
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR---RELLFNEVVIMRDYQ 100

Query: 103 -------------------------------------------------VAHALSYLHHD 113
                                                            V  AL+YLH  
Sbjct: 101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLH-- 158

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
               ++HRDI S++ILL  +    ++DFG                 ++  +P+   ++G
Sbjct: 159 -AQGVIHRDIKSDSILLTLDGRVKLSDFGFCA-------------QISKDVPKRKSLVG 203

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 20/162 (12%), Positives = 41/162 (25%), Gaps = 31/162 (19%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
             H+L+  +    + L       +VH   + +N+ +  +    + D              
Sbjct: 195 ALHILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGRLMLGDVSALW--------- 242

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                    +            YA           P     A T   T   + +  G+  
Sbjct: 243 --------KVGTRGPASSVPVTYA-----------PREFLNASTATFTHALNAWQLGLSI 283

Query: 215 LKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQKI 256
            +V     P  L++     S  +  L       L+      +
Sbjct: 284 YRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPL 325

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 5/71 (7%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----TSVAHALS 108
           +  G    V+   ++   +  ALK          + ++         +     S   A  
Sbjct: 70  LRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARD 129

Query: 109 YLHHDCTLSIV 119
                     V
Sbjct: 130 RRRLLLPSDAV 140

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 37/245 (15%), Positives = 65/245 (26%), Gaps = 98/245 (40%)

Query: 45  TEEFHIKYCIGTG--GYGSVYKA-ELPDGKVVALKK--LHQSETEDSAFVKSFQNEAHVL 99
              + +   IG G     +V  A   P G+ V +++  L     E    V   Q E HV 
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEM---VTFLQGELHVS 80

Query: 100 ST-----------------------------SVAH------------------------A 106
                                          S                           A
Sbjct: 81  KLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKA 140

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL-- 164
           L Y+HH      VHR + +++IL+  + + +++   +   +      +            
Sbjct: 141 LDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVK 197

Query: 165 ------PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL 218
                 P+V  +   +  Y                          K D+YS G+ A ++ 
Sbjct: 198 VLPWLSPEV--LQQNLQGY------------------------DAKSDIYSVGITACELA 231

Query: 219 MGTHP 223
            G  P
Sbjct: 232 NGHVP 236

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 61/153 (39%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-- 101
            E F +   +G G YGSVYKA     G++VA+K++     E    ++    E  ++    
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV---PVESD--LQEIIKEISIMQQCD 82

Query: 102 ---------------------------SVA-----------------------HALSYLH 111
                                      SV+                         L YLH
Sbjct: 83  SPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH 142

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
                  +HRDI + NILL++   A +ADFG A
Sbjct: 143 FM---RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 82/222 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV---VALKKLHQSETEDSAFVKSFQNEAHVLS 100
            EF     +G+G +G+VYK        KV   VA+K+L ++ +  +   K   +EA+V++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKA--NKEILDEAYVMA 72

Query: 101 TSVAHA--------------------------LSYLH-HDCTLSI--------------- 118
            SV +                           L Y+  H   +                 
Sbjct: 73  -SVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131

Query: 119 -------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                  VHRD+++ N+L+ +     + DFG A+LL  +      E      +P      
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK---VP------ 182

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
             I + AL              E     + T + DV+S+GV 
Sbjct: 183 --IKWMAL--------------ESILHRIYTHQSDVWSYGVT 208

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 33/163 (20%), Positives = 46/163 (28%), Gaps = 69/163 (42%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
             F I+  IG G +  VY+A  L DG  VALKK+   +  D+        E  +L     
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ--- 88

Query: 105 HALSYLHH------------DCTLSIV--------------------------------- 119
                L+H            D  L+IV                                 
Sbjct: 89  -----LNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFV 143

Query: 120 ---------------HRDISSNNILLDSNLEAFVADFGTARLL 147
                          HRDI   N+ + +     + D G  R  
Sbjct: 144 QLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 46/216 (21%), Positives = 69/216 (31%), Gaps = 77/216 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           E   ++  +G G +G V+         VA+K L        AF+      K  +      
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 326

Query: 94  ----------------------------NEAHVLSTS--------VAHALSYLHHDCTLS 117
                                            L           +A  ++Y+     ++
Sbjct: 327 LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MN 383

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            VHRD+ + NIL+  NL   VADFG ARL+  +     Y        P        I + 
Sbjct: 384 YVHRDLRAANILVGENLVCKVADFGLARLIEDNE----YTARQGAKFP--------IKWT 431

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           A           P   E A     T K DV+SFG++
Sbjct: 432 A-----------P---EAALYGRFTIKSDVWSFGIL 453

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 41/224 (18%), Positives = 65/224 (29%), Gaps = 84/224 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV--VALKKLHQSETEDSAFVKSFQNEAHVLST 101
           ++  +   +G G +G V + E   P GK   VA+K L          +  F  E + +  
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM-H 76

Query: 102 SVAHA--------------------------LSYLH-HDCTLSI---------------- 118
           S+ H                           L  L  H     +                
Sbjct: 77  SLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGY 136

Query: 119 ------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                 +HRD+++ N+LL +     + DFG  R L  +                      
Sbjct: 137 LESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND--------------------- 175

Query: 173 CISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
              +Y      Q H  +PF     E   T   +   D + FGV 
Sbjct: 176 --DHY----VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 213

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 46/259 (17%), Positives = 76/259 (29%), Gaps = 97/259 (37%)

Query: 39  EDLINATEEFHIKYC----IGTGGYGSVYKAELPDGKVVALK------------------ 76
            ++ N  +           +G G  G+V       G+ VA+K                  
Sbjct: 4   ANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLT 63

Query: 77  ---------KLHQSETEDSAFV-----------------KSFQNEAHVLSTS-------- 102
                    + + SE     F+                 K+  +E   L           
Sbjct: 64  ESDDHPNVIRYYCSE-TTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 122

Query: 103 -VAHALSYLHHDCTLSIVHRDISSNNILLDS-------------NLEAFVADFGTARLLH 148
            +A  +++LH    L I+HRD+   NIL+ +             NL   ++DFG  + L 
Sbjct: 123 QIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 179

Query: 149 VDSSNRPYEWALTDTLPQVNKIIGCISYYA---LWFYFQRHNLMPFHVELAYTMVVTEKC 205
              S+             +N   G   + A   L              +       T   
Sbjct: 180 SGQSS---------FRTNLNNPSGTSGWRAPELL------EESNNLQTKRRL----TRSI 220

Query: 206 DVYSFGVVALKVL-MGTHP 223
           D++S G V   +L  G HP
Sbjct: 221 DIFSMGCVFYYILSKGKHP 239

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 46/216 (21%), Positives = 69/216 (31%), Gaps = 77/216 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           E   ++  +G G +G V+         VA+K L        AF+      K  +      
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 243

Query: 94  ----------------------------NEAHVLSTS--------VAHALSYLHHDCTLS 117
                                            L           +A  ++Y+     ++
Sbjct: 244 LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MN 300

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            VHRD+ + NIL+  NL   VADFG ARL+  +     Y        P        I + 
Sbjct: 301 YVHRDLRAANILVGENLVCKVADFGLARLIEDNE----YTARQGAKFP--------IKWT 348

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           A           P   E A     T K DV+SFG++
Sbjct: 349 A-----------P---EAALYGRFTIKSDVWSFGIL 370

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 55/159 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALK----------------------------- 76
             + I   IG+GG   V++      ++ A+K                             
Sbjct: 56  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115

Query: 77  ----KLHQS-ETEDSAFV----------------KSFQ-NEAHVLSTSVAHALSYLHHDC 114
               +L+    T+   ++                KS    E      ++  A+  +H   
Sbjct: 116 DKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ-- 173

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
              IVH D+   N L+       + DFG A  +  D+++
Sbjct: 174 -HGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTS 210

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 79/218 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKV-VALKKLHQSETEDSAFV------KSFQ----- 93
            +  +K+ +G G YG VY+       + VA+K L +   E   F+      K  +     
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 279

Query: 94  ------------------------------NEAHVLSTS--------VAHALSYLHHDCT 115
                                              +S          ++ A+ YL     
Sbjct: 280 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK--- 336

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
            + +HR++++ N L+  N    VADFG +RL+  D+    Y        P        I 
Sbjct: 337 KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT----YTAHAGAKFP--------IK 384

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           + A           P   E       + K DV++FGV+
Sbjct: 385 WTA-----------P---ESLAYNKFSIKSDVWAFGVL 408

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 55/159 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALK----------------------------- 76
             + I   IG+GG   V++      ++ A+K                             
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

Query: 77  ----KLHQS-ETEDSAFV----------------KSFQ-NEAHVLSTSVAHALSYLHHDC 114
               +L+    T+   ++                KS    E      ++  A+  +H   
Sbjct: 69  DKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ-- 126

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
              IVH D+   N L+       + DFG A  +  D+++
Sbjct: 127 -HGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTS 163

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 62/158 (39%)

Query: 53  CIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------- 101
            +G G YG VY   +L +   +A+K   +    DS + +    E  +             
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIK---EIPERDSRYSQPLHEEIALHKHLKHKNIVQYL 85

Query: 102 -------------------SVA-------------------------HALSYLHHDCTLS 117
                              S++                           L YLH +    
Sbjct: 86  GSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--- 142

Query: 118 IVHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNR 154
           IVHRDI  +N+L+++ +    ++DFGT++ L   +   
Sbjct: 143 IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCT 180

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 24/129 (18%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
               L+  V   L+ LHH     +VH  +   +I+LD     F+  F             
Sbjct: 212 ARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG------ 262

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                    +  + +        A                  +  ++T   D ++ G+  
Sbjct: 263 ------ASAVSPIGRGFAPPETTAERMLPFGQ---------HHPTLMTFAFDTWTLGLAI 307

Query: 215 LKVLMGTHP 223
             +     P
Sbjct: 308 YWIWCADLP 316

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHH 112
           +G     +  +A     G+   +   + +E   S  +K  + E   L       L  + +
Sbjct: 86  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRL-----LRGIKN 140

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
                +  R I   +++ D   +  +      R + V S    Y    ++
Sbjct: 141 QKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSN 190

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 55/159 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALK----------------------------- 76
             + I   IG+GG   V++      ++ A+K                             
Sbjct: 28  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87

Query: 77  ----KLHQS-ETEDSAFV----------------KSFQ-NEAHVLSTSVAHALSYLHHDC 114
               +L+    T+   ++                KS    E      ++  A+  +H   
Sbjct: 88  DKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ-- 145

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
              IVH D+   N L+       + DFG A  +  D+++
Sbjct: 146 -HGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTS 182

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 89/222 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           E   +   +G G +G V+         VA+K L Q      AF+      K  Q      
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 94  ----------------------------NEAHVLSTS--------VAHALSYLHHDCTLS 117
                                            L+ +        +A  ++++      +
Sbjct: 73  LYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERN 129

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVNKII 171
            +HRD+ + NIL+   L   +ADFG ARL+  +          P +W    T P+     
Sbjct: 130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW----TAPEA---- 181

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                  + Y    T K DV+SFG++
Sbjct: 182 -----------------------INYG-TFTIKSDVWSFGIL 199

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 36/224 (16%), Positives = 63/224 (28%), Gaps = 89/224 (39%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKV-VALKKLHQSETED--SAFVK------------ 90
           E+  +   IG G +G V+   L      VA+K   ++   D  + F++            
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173

Query: 91  ---------------------------SF-QNEAHVLSTS--------VAHALSYLHHDC 114
                                      +F + E   L            A  + YL    
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE--- 230

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
           +   +HRD+++ N L+       ++DFG +R                             
Sbjct: 231 SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV----------------------- 267

Query: 175 SYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
                  Y     L    V     E       + + DV+SFG++
Sbjct: 268 -------YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGIL 304

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 57/150 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           E+F I   +G G +G+VY A E     ++ALK L +++ E +      + E  + S  + 
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS-HLR 67

Query: 105 H----------------------------------------------------ALSYLHH 112
           H                                                    ALSY H 
Sbjct: 68  HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH- 126

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
             +  ++HRDI   N+LL S  E  +ADFG
Sbjct: 127 --SKRVIHRDIKPENLLLGSAGELKIADFG 154

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 82/222 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV---VALKKLHQSETEDSAFVKSFQNEAHVLS 100
            EF     +G+G +G+VYK        KV   VA+K+L ++ +  +   K   +EA+V++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKA--NKEILDEAYVMA 72

Query: 101 TSVAHA--------------------------LSYLH-HDCTLSI--------------- 118
            SV +                           L Y+  H   +                 
Sbjct: 73  -SVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131

Query: 119 -------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                  VHRD+++ N+L+ +     + DFG A+LL  +      E      +P      
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK---VP------ 182

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
             I + AL              E     + T + DV+S+GV 
Sbjct: 183 --IKWMAL--------------ESILHRIYTHQSDVWSYGVT 208

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 58/158 (36%)

Query: 54  IGTGGYGSVYKAEL-PDGKVVALKKLHQ----------------------------SETE 84
           IG G +G VY+A+L   G++VA+KK+ Q                            S  E
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGE 121

Query: 85  DSAFV-----------------KSFQNEAHVLSTS--------VAHALSYLHHDCTLSIV 119
               V                 + +      L           +  +L+Y+H   +  I 
Sbjct: 122 KKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGIC 178

Query: 120 HRDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRPY 156
           HRDI   N+LLD +     + DFG+A+ L     N  Y
Sbjct: 179 HRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY 216

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 46/222 (20%), Positives = 73/222 (32%), Gaps = 82/222 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGK----VVALKKLHQSETEDSAFVKSFQNEAHVLS 100
            E      +G+G +G+V+K    P+G+     V +K +       S   ++  +    + 
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQS--FQAVTDHMLAIG 70

Query: 101 TSVAHA--------------------------LSYLH-HDCTLSI--------------- 118
            S+ HA                          L ++  H   L                 
Sbjct: 71  -SLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMY 129

Query: 119 -------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                  VHR++++ N+LL S  +  VADFG A LL  D     Y  A     P      
Sbjct: 130 YLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAK---TP------ 180

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
             I + AL              E  +    T + DV+S+GV 
Sbjct: 181 --IKWMAL--------------ESIHFGKYTHQSDVWSYGVT 206

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 44/270 (16%), Positives = 77/270 (28%), Gaps = 92/270 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGK----------------------VVALKKLH--- 79
            +F    C+G GG+G V++A+   D                        V AL KL    
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 80  ----------------QSETEDSAFV---------------------KSFQNEAHVLS-- 100
                              +    ++                        +  +  L   
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124

Query: 101 TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWAL 160
             +A A+ +LH   +  ++HRD+  +NI    +    V DFG    +             
Sbjct: 125 LQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMD-QDEEEQTVLTP 180

Query: 161 TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG 220
                +    +G   Y +           P   E  +    + K D++S G++       
Sbjct: 181 MPAYARHTGQVGTKLYMS-----------P---EQIHGNSYSHKVDIFSLGLILF----- 221

Query: 221 THPGELLSSLSSSSGPKIMLIDVLDQRLSP 250
               ELL   S+       L DV + +  P
Sbjct: 222 ----ELLYPFSTQMERVRTLTDVRNLKFPP 247

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 29/124 (23%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR---LLHVDSSNRPYEWA 159
           V   L+ LHH     +VH  +   +I+LD     F+  F          V S +R +   
Sbjct: 215 VIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGF--- 268

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                P++      ISY+                      ++T   D ++ G+V   +  
Sbjct: 269 ---EPPELEARRATISYHRD-----------------RRTLMTFSFDAWALGLVIYWIWC 308

Query: 220 GTHP 223
              P
Sbjct: 309 ADLP 312

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHH 112
           +G     +  +A +   G+   +   + +E   S  +K  + E   L       L  + +
Sbjct: 81  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL-----RLLRGIKN 135

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV 149
                +  R I   +++ D   +  +      R + V
Sbjct: 136 QKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWV 172

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 77/216 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           E   ++  +G G +G V+ A       VA+K +        AF+      K+ Q      
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVK 247

Query: 94  ----------------------------NEAHVLSTS--------VAHALSYLHHDCTLS 117
                                       +E               +A  ++++      +
Sbjct: 248 LHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RN 304

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            +HRD+ + NIL+ ++L   +ADFG AR++  +            T  +  K    I + 
Sbjct: 305 YIHRDLRAANILVSASLVCKIADFGLARVIEDN----------EYTAREGAKF--PIKWT 352

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           A           P   E       T K DV+SFG++
Sbjct: 353 A-----------P---EAINFGSFTIKSDVWSFGIL 374

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 95  EAHVLS--TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
              VL        A+ ++H      I+HRD+   N+LL +     + DFG+A  +     
Sbjct: 135 CDTVLKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPD 193

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV 212
                        ++ +      Y             P  ++L     + EK D+++ G 
Sbjct: 194 YSWSAQRRALVEEEITR-NTTPMYRT-----------PEIIDLYSNFPIGEKQDIWALGC 241

Query: 213 VALKVLMGTHP 223
           +   +    HP
Sbjct: 242 ILYLLCFRQHP 252

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 97/226 (42%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------ 99
           ++      +GTG +G V   +      VA+K + +    +  F++    EA V+      
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHE 79

Query: 100 ----------------------------------------------STSVAHALSYLHHD 113
                                                            V  A+ YL   
Sbjct: 80  KLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE-- 137

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQV 167
            +   +HRD+++ N L++      V+DFG +R +  D          P  W    + P+V
Sbjct: 138 -SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW----SPPEV 192

Query: 168 NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                      L Y+   + K D+++FGV+
Sbjct: 193 ---------------------------LMYS-KFSSKSDIWAFGVL 210

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 36/207 (17%), Positives = 61/207 (29%), Gaps = 74/207 (35%)

Query: 11  NKTPKLNSRAAKNGDVFSVWNYDGKI------SYEDLINATEEFHIKYCI----GTGGYG 60
               K   R   N    ++     K+      + +D     +    +Y +    G+G  G
Sbjct: 90  ELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACG 149

Query: 61  SVYKA-ELPDGKVVALK-----KLHQSETEDSAFVKSFQNEAHVLSTSVAH--------- 105
            V  A E    K VA++     K       ++    + + E  +L   + H         
Sbjct: 150 EVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK-KLNHPCIIKIKNF 208

Query: 106 ------------------------------------------ALSYLHHDCTLSIVHRDI 123
                                                     A+ YLH      I+HRD+
Sbjct: 209 FDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDL 265

Query: 124 SSNNILLDSNLEAF---VADFGTARLL 147
              N+LL S  E     + DFG +++L
Sbjct: 266 KPENVLLSSQEEDCLIKITDFGHSKIL 292

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 45/214 (21%), Positives = 71/214 (33%), Gaps = 83/214 (38%)

Query: 54  IGTGGYGSVYKAELPDGKV---VALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHA---- 106
           +G+G +G+V K      KV   VA+K L ++E  D A       EA+V+   + +     
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKIL-KNEANDPALKDELLAEANVM-QQLDNPYIVR 82

Query: 107 ----------------------LSYLHHDCTLSI----------------------VHRD 122
                                   YL  +  +                        VHRD
Sbjct: 83  MIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRD 142

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY 182
           +++ N+LL +   A ++DFG ++ L  D                        +YY     
Sbjct: 143 LAARNVLLVTQHYAKISDFGLSKALRADE-----------------------NYY----K 175

Query: 183 FQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
            Q H   P      E       + K DV+SFGV+
Sbjct: 176 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL 209

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 42/127 (33%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDSSNR----PYE 157
           +   L +LH   T  I+HRD+  +NI +        + D G A L     +      P  
Sbjct: 138 ILKGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPE- 195

Query: 158 W-ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK 216
           + A     P++                          E  Y     E  DVY+FG+  L+
Sbjct: 196 FMA-----PEM-------------------------YEEKY----DESVDVYAFGMCMLE 221

Query: 217 VLMGTHP 223
           +    +P
Sbjct: 222 MATSEYP 228

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 97/226 (42%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------ 99
            E      IG+G +G V+     +   VA+K + +    +  F++    EA V+      
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHP 63

Query: 100 ----------------------------------------------STSVAHALSYLHHD 113
                                                            V   ++YL   
Sbjct: 64  KLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL--- 120

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQV 167
               ++HRD+++ N L+  N    V+DFG  R +  D          P +W      P+V
Sbjct: 121 EEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW----ASPEV 176

Query: 168 NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                       +++   + K DV+SFGV+
Sbjct: 177 ---------------------------FSFS-RYSSKSDVWSFGVL 194

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 89/222 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSF------- 92
           EE  +   +G+G +G V   +      VA+K + +    +  F                 
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVK 67

Query: 93  ---------------------------QNEAHVLSTS--------VAHALSYLHHDCTLS 117
                                      ++    L  S        V   +++L    +  
Sbjct: 68  FYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQ 124

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR------PYEWALTDTLPQVNKII 171
            +HRD+++ N L+D +L   V+DFG  R +  D          P +W    + P+V    
Sbjct: 125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKW----SAPEV---- 176

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                    Y    + K DV++FG++
Sbjct: 177 -----------------------FHYF-KYSSKSDVWAFGIL 194

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 59/157 (37%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
              +++ ++  IG+G    V  A   P  + VA+K+++  + + S  +     E   +S 
Sbjct: 12  INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTS--MDELLKEIQAMSQ 69

Query: 102 -----------------------------SVAHALSYLHHDCT----------------- 115
                                        SV   + ++                      
Sbjct: 70  CHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILRE 129

Query: 116 ----LSIVH------RDISSNNILLDSNLEAFVADFG 142
               L  +H      RD+ + NILL  +    +ADFG
Sbjct: 130 VLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFG 166

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 57/154 (37%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH------- 105
           +G GG+   ++  +    +V A K + +S        +    E  +   S+AH       
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHR-SLAHQHVVGFH 107

Query: 106 ---------------------------------------------ALSYLHHDCTLSIVH 120
                                                           YLH +    ++H
Sbjct: 108 GFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIH 164

Query: 121 RDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           RD+   N+ L+ +LE  + DFG A  +  D   +
Sbjct: 165 RDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERK 198

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 44/273 (16%), Positives = 78/273 (28%), Gaps = 93/273 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS 100
                   +G G +G V            G++VA+K L             ++ E  +L 
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQH--RSGWKQEIDILR 88

Query: 101 TSVAHA-----------------------------LSYLH-HDCTLS------------- 117
            ++ H                                YL  H   L+             
Sbjct: 89  -TLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGM 147

Query: 118 -------IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDT-LPQVNK 169
                   +HRD+++ N+LLD++    + DFG A+ +        Y     D   P    
Sbjct: 148 AYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE---YYRVREDGDSP---- 200

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS 228
               + +YA               E           DV+SFGV   ++L          +
Sbjct: 201 ----VFWYAP--------------ECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT 242

Query: 229 SLSSSSG---PKIMLIDVLD-----QRLSPPVN 253
                 G    ++ ++ + +     +RL  P  
Sbjct: 243 KFLELIGIAQGQMTVLRLTELLERGERLPRPDK 275

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 59/157 (37%)

Query: 50  IKYCIGTGGYGSVYKAEL--PDGKV-VALKKLHQSETEDSAFVKSFQNEAHVL------- 99
               +G G +GSV +        ++ VA+K L Q   +     +    EA ++       
Sbjct: 14  ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKAD--TEEMMREAQIMHQLDNPY 71

Query: 100 --------------------------------------------STSVAHALSYLHHDCT 115
                                                          V+  + YL     
Sbjct: 72  IVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYL---EE 128

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
            + VHRD+++ N+LL +   A ++DFG ++ L  D S
Sbjct: 129 KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS 165

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 59/145 (40%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKL------------------------- 78
           T EFH    IG+G +GSV+K  +  DG + A+K+                          
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 79  -------HQSETED---------------SAFVKSFQNEAHVLS--------TSVAHALS 108
                    +  ED               +  +                     V   L 
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 129

Query: 109 YLHHDCTLSIVHRDISSNNILLDSN 133
           Y+H     S+VH DI  +NI +   
Sbjct: 130 YIHSM---SLVHMDIKPSNIFISRT 151

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 54.0 bits (130), Expect = 9e-09
 Identities = 14/145 (9%), Positives = 29/145 (20%), Gaps = 57/145 (39%)

Query: 53  CIGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEAHVLS--------- 100
             G       ++A   D    + VAL  +          ++   +    LS         
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 101 ----------------------------------------TSVAHALSYLHHDCTLSIVH 120
                                                    S+A A    H      +  
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA---GVAL 152

Query: 121 RDISSNNILLDSNLEAFVADFGTAR 145
                + + +  + +  +A   T  
Sbjct: 153 SIDHPSRVRVSIDGDVVLAYPATMP 177

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 39/160 (24%), Positives = 55/160 (34%), Gaps = 57/160 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGK--VVALKKLHQSETEDSAFVKSFQNEAHVLST 101
               I   +G G +G V    L  P  K   VA+K L    TE     + F  EA ++  
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQ 102

Query: 102 SVAHA---------------------------LSYLH-HDCTLSI--------------- 118
              H                             S+L  HD   ++               
Sbjct: 103 -FDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMK 161

Query: 119 -------VHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
                  VHRD+++ NIL++SNL   V+DFG  R+L  D 
Sbjct: 162 YLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP 201

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 91/224 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKV-VALKKLHQSETEDSAFV------KSFQ----- 93
            +  +K+ +G G YG VY+       + VA+K L +   E   F+      K  +     
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 72

Query: 94  ------------------------------NEAHVLSTS--------VAHALSYLHHDCT 115
                                              +S          ++ A+ YL     
Sbjct: 73  QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---K 129

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS------SNRPYEWALTDTLPQVNK 169
            + +HRD+++ N L+  N    VADFG +RL+  D+      +  P +W    T P+   
Sbjct: 130 KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW----TAPES-- 183

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                    LAY    + K DV++FGV+
Sbjct: 184 -------------------------LAYN-KFSIKSDVWAFGVL 201

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 46/244 (18%), Positives = 75/244 (30%), Gaps = 100/244 (40%)

Query: 39  EDLINATEEFHIKY---------CIGTGGYGSVYKAELPDGK----VVALKKLHQSETED 85
            +L+ A +   I            IG G +G VY   L D        A+K L++     
Sbjct: 9   PELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG 68

Query: 86  SAFVKSFQNEAHVLSTSVAHA----------------------------LSYL-HHDCTL 116
              V  F  E  ++    +H                              +++ +     
Sbjct: 69  E--VSQFLTEGIIMK-DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP 125

Query: 117 SI----------------------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           ++                      VHRD+++ N +LD      VADFG AR ++      
Sbjct: 126 TVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK---- 181

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYS 209
                                YY++  + +    +P  V     E   T   T K DV+S
Sbjct: 182 --------------------EYYSV--HNKTGAKLP--VKWMALESLQTQKFTTKSDVWS 217

Query: 210 FGVV 213
           FGV+
Sbjct: 218 FGVL 221

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 41/226 (18%), Positives = 68/226 (30%), Gaps = 92/226 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV--VALKKLHQSETEDSAFVKSFQNEAHVLST 101
           E+  +   +G G +G VY+       G+   VA+K   +  T D+   + F +EA ++  
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDN--KEKFMSEAVIMK- 68

Query: 102 SVAHA--------------------------LSYL-HHDCTLSI---------------- 118
           ++ H                             YL  +  +L +                
Sbjct: 69  NLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAY 128

Query: 119 ------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                 VHRDI+  NIL+ S     + DFG +R +  +                      
Sbjct: 129 LESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE---------------------- 166

Query: 173 CISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
              YY           +P  +     E       T   DV+ F V 
Sbjct: 167 --DYYK-----ASVTRLP--IKWMSPESINFRRFTTASDVWMFAVC 203

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP 165
           ALSY+H   +  I+HRD+   NI +D +    + DFG A+ +H        +        
Sbjct: 128 ALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSS 184

Query: 166 QV-NKIIGCISYYALWFYFQRHNLMPFHVE-LAYTMVVTEKCDVYSFGVVA 214
                 IG   Y A               E L  T    EK D+YS G++ 
Sbjct: 185 DNLTSAIGTAMYVA-----------T---EVLDGTGHYNEKIDMYSLGIIF 221

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
             +F     +G G +G V KA    D +  A+KK+  +E +    + +  +E  +L++
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK----LSTILSEVMLLAS 58

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 57/150 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           ++F I   +G G +G+VY A E  +  ++ALK L +S+ E        + E  + S  + 
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS-HLR 72

Query: 105 H----------------------------------------------------ALSYLHH 112
           H                                                    AL Y H 
Sbjct: 73  HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH- 131

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
                ++HRDI   N+L+    E  +ADFG
Sbjct: 132 --ERKVIHRDIKPENLLMGYKGELKIADFG 159

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 40/162 (24%), Positives = 56/162 (34%), Gaps = 58/162 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV---VALKKLHQSETEDSAFVKSFQNEAHVLS 100
                +  IG G +G VYK  L    GK    VA+K L    TE       F  EA ++ 
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQR--VDFLGEAGIMG 101

Query: 101 TSVAHA---------------------------LSYL-HHDCTLSI-------------- 118
              +H                              +L   D   S+              
Sbjct: 102 -QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGM 160

Query: 119 --------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSS 152
                   VHRD+++ NIL++SNL   V+DFG +R+L  D  
Sbjct: 161 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE 202

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 24/249 (9%), Positives = 58/249 (23%), Gaps = 98/249 (39%)

Query: 45  TEEFHIKYCIGTGGYGSVYKAE------LPDGKVVALKKLHQS----------------- 81
           ++  ++ + +G G +  VY+A         + +   LK    +                 
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 82  -------------ETEDSAFV----------------------KSF-QNEAHVLSTSVAH 105
                          ++ + +                      K   Q      +  + +
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY 183

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAF-----------VADFGTARLLHVDSSNR 154
            +  +H      I+H DI  +N +L +                + D G +  + +     
Sbjct: 184 MIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGT 240

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                                +                VE+        + D +      
Sbjct: 241 -----------IFTAKCETSGFQC--------------VEMLSNKPWNYQIDYFGVAATV 275

Query: 215 LKVLMGTHP 223
             +L GT+ 
Sbjct: 276 YCMLFGTYM 284

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 57/154 (37%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH------- 105
           +G GG+   ++  +    +V A K + +S        +    E  +   S+AH       
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHR-SLAHQHVVGFH 81

Query: 106 ---------------------------------------------ALSYLHHDCTLSIVH 120
                                                           YLH      ++H
Sbjct: 82  GFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHR---NRVIH 138

Query: 121 RDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           RD+   N+ L+ +LE  + DFG A  +  D   +
Sbjct: 139 RDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERK 172

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 57/160 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV--VALKKLHQSETEDSAFVKSFQNEAHVLST 101
              HI+  IG+G  G V    L  P  +   VA+K L    TE     + F +EA ++  
Sbjct: 49  SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR--RDFLSEASIM-G 105

Query: 102 SVAHA---------------------------LSYL-HHDCTLSI--------------- 118
              H                             ++L  HD   +I               
Sbjct: 106 QFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMR 165

Query: 119 -------VHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
                  VHRD+++ N+L+DSNL   V+DFG +R+L  D 
Sbjct: 166 YLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP 205

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 87/234 (37%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-- 101
           ++ +  +  +G G +G V    +   G+  A+K + + + +     +S   E  +L    
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 102 -------------------------------------------------SVAHALSYLHH 112
                                                             V   ++Y+H 
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHK 144

Query: 113 DCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYEWALTDTLPQVNK 169
                IVHRD+   N+LL+S  +     + DFG +                     ++  
Sbjct: 145 ---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK--------------KMKD 187

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            IG   Y A           P  +   Y     EKCDV+S GV+   +L G  P
Sbjct: 188 KIGTAYYIA-----------PEVLHGTY----DEKCDVWSTGVILYILLSGCPP 226

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 47/228 (20%), Positives = 70/228 (30%), Gaps = 91/228 (39%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGK----VVALKKLHQSETEDSAFVKSFQNEAHVLST 101
              H    IG G +G VY  E  D        A+K L +        V++F  E  ++  
Sbjct: 21  VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQ--VEAFLREGLLMR- 77

Query: 102 SVAHA----------------------------LSYLH-HDCTLSI-------------- 118
            + H                             L ++       ++              
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGM 137

Query: 119 --------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
                   VHRD+++ N +LD +    VADFG AR +                       
Sbjct: 138 EYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR-------------------- 177

Query: 171 IGCISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
                YY++     RH  +P  V     E   T   T K DV+SFGV+
Sbjct: 178 ----EYYSV--QQHRHARLP--VKWTALESLQTYRFTTKSDVWSFGVL 217

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 83/226 (36%)

Query: 42  INATEEFHIKYCIGTGGYGSVYKAELPDGKV---VALKKLHQSETEDSAFVKSFQNEAHV 98
           +           +G G +GSV +      K    VA+K L Q   +     +    EA +
Sbjct: 332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKAD--TEEMMREAQI 389

Query: 99  ---------------------------------------------------LSTSVAHAL 107
                                                              L   V+  +
Sbjct: 390 MHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGM 449

Query: 108 SYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQV 167
            YL      + VHR++++ N+LL +   A ++DFG ++ L  D S   Y        P  
Sbjct: 450 KYL---EEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY--YTARSAGKWP-- 502

Query: 168 NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                 + +YA               E       + + DV+S+GV 
Sbjct: 503 ------LKWYAP--------------ECINFRKFSSRSDVWSYGVT 528

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 27/150 (18%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP 165
           A+ +LH      ++HRD+  +NI    +    V DFG    +                  
Sbjct: 176 AVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMD-QDEEEQTVLTPMPAYA 231

Query: 166 QVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                +G   Y +           P   E  +    + K D++S G++           E
Sbjct: 232 THTGQVGTKLYMS-----------P---EQIHGNNYSHKVDIFSLGLILF---------E 268

Query: 226 LLSSLSSSSGPKIMLIDVLDQRLSPPVNQK 255
           LL S S+      ++ DV + +      QK
Sbjct: 269 LLYSFSTQMERVRIITDVRNLKFPLLFTQK 298

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS 100
            +F    C+G GG+G V++A+   D    A+K++     E +   +    E   L+
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELA--REKVMREVKALA 59

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 31/152 (20%), Positives = 46/152 (30%), Gaps = 60/152 (39%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLH-QSETEDSAFV-----------KSFQNEAH--- 97
           IG G YG+VYKA +   G  VALK +   +       +           +  +   H   
Sbjct: 17  IGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNV 76

Query: 98  ------VLSTSVAHALS------YLHHD-------------------------------C 114
                   ++     +       ++  D                                
Sbjct: 77  VRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFL 136

Query: 115 -TLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
               IVHRD+   NIL+ S     +ADFG AR
Sbjct: 137 HANCIVHRDLKPENILVTSGGTVKLADFGLAR 168

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 33/225 (14%), Positives = 59/225 (26%), Gaps = 84/225 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP-----DGKVVALKKL--HQSETEDSAFV------KSF 92
                   +G G +G V            G+ VA+K L         +         ++ 
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 93  ------------------------------------QNEAHVLSTS--------VAHALS 108
                                                   + ++          +   + 
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD 140

Query: 109 YLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
           YL    +   VHRD+++ N+L++S  +  + DFG  + +  D     Y        P   
Sbjct: 141 YLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY--YTVKDDRDSP--- 192

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                + +YA               E           DV+SFGV 
Sbjct: 193 -----VFWYAP--------------ECLMQSKFYIASDVWSFGVT 218

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 41/220 (18%), Positives = 64/220 (29%), Gaps = 89/220 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           +E  +   IG G +G V   +   G  VA+K +    T   AF+         +      
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ-AFLAEASVMTQLRHSNLVQ 250

Query: 94  ------------------------------NEAHVLSTS--------VAHALSYLHHDCT 115
                                             VL           V  A+ YL     
Sbjct: 251 LLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG--- 307

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR--PYEWALTDTLPQVNKIIGC 173
            + VHRD+++ N+L+  +  A V+DFG  +           P +W    T P        
Sbjct: 308 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKW----TAP-------- 355

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                               E       + K DV+SFG++
Sbjct: 356 --------------------EALREKKFSTKSDVWSFGIL 375

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 45/220 (20%), Positives = 68/220 (30%), Gaps = 81/220 (36%)

Query: 49  HIKYCIGTGGYGSVYKAELPDGK----VVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           H    IG G +G VY   L D        A+K L++        V  F  E  ++    +
Sbjct: 92  HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE--VSQFLTEGIIMK-DFS 148

Query: 105 HA----------------------------LSYL-HHDCTLSI----------------- 118
           H                              +++ +     ++                 
Sbjct: 149 HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL 208

Query: 119 -----VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
                VHRD+++ N +LD      VADFG AR ++ D             LP        
Sbjct: 209 ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEFDSVHNKTGAKLP-------- 259

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
           + + AL              E   T   T K DV+SFGV+
Sbjct: 260 VKWMAL--------------ESLQTQKFTTKSDVWSFGVL 285

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 41/220 (18%), Positives = 65/220 (29%), Gaps = 89/220 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV------KSFQ------ 93
           +E  +   IG G +G V   +   G  VA+K +    T   AF+         +      
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ-AFLAEASVMTQLRHSNLVQ 78

Query: 94  ------------------------------NEAHVLSTS--------VAHALSYLHHDCT 115
                                             VL           V  A+ YL     
Sbjct: 79  LLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---G 135

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR--PYEWALTDTLPQVNKIIGC 173
            + VHRD+++ N+L+  +  A V+DFG  +           P +W    T P+       
Sbjct: 136 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKW----TAPEA------ 185

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                                L      + K DV+SFG++
Sbjct: 186 ---------------------LREK-KFSTKSDVWSFGIL 203

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 41/226 (18%), Positives = 65/226 (28%), Gaps = 92/226 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV--VALKKLHQSETEDSAFVKSFQNEAHVLST 101
           E   +  CIG G +G V++     P+     VA+K      ++     + F  EA  +  
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMR- 71

Query: 102 SVAHA--------------------------LSYL-HHDCTLSI---------------- 118
              H                            S+L     +L +                
Sbjct: 72  QFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAY 131

Query: 119 ------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                 VHRDI++ N+L+ SN    + DFG +R +                         
Sbjct: 132 LESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS---------------------- 169

Query: 173 CISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
             +YY           +P  +     E       T   DV+ FGV 
Sbjct: 170 --TYYK-----ASKGKLP--IKWMAPESINFRRFTSASDVWMFGVC 206

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 42/200 (21%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 6   LLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKA 65
           L AL         R  KN D F     D      DL    E++ +   IG G +G V   
Sbjct: 29  LDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLV 88

Query: 66  ELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS---------------------- 102
                 KV A+K L + E    +    F  E  +++ +                      
Sbjct: 89  RHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVM 148

Query: 103 ----------------------------VAHALSYLHHDCTLSIVHRDISSNNILLDSNL 134
                                       V  AL  +H    +  +HRD+  +N+LLD + 
Sbjct: 149 EYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSG 205

Query: 135 EAFVADFGTARLLHVDSSNR 154
              +ADFGT   ++ +   R
Sbjct: 206 HLKLADFGTCMKMNKEGMVR 225

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 41/224 (18%), Positives = 64/224 (28%), Gaps = 88/224 (39%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--PDGKV--VALKKLHQSETEDSAFVKSFQNEAHVLST 101
           E   +  CIG G +G V++     P+     VA+K      ++     + F  EA  +  
Sbjct: 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR--EKFLQEALTMR- 446

Query: 102 SVAHA--------------------------LSYL-HHDCTLSI---------------- 118
              H                            S+L     +L +                
Sbjct: 447 QFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAY 506

Query: 119 ------VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                 VHRDI++ N+L+ SN    + DFG +R +                         
Sbjct: 507 LESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS---------------------- 544

Query: 173 CISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
             +YY           +P      E       T   DV+ FGV 
Sbjct: 545 --TYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGVC 581

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 58/163 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           E+F +   +G G +  VY+A  +  G  VA+K + +     +  V+  QNE  +    + 
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHC-QLK 69

Query: 105 H-----------------------------------------------------ALSYLH 111
           H                                                      + YLH
Sbjct: 70  HPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH 129

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
              +  I+HRD++ +N+LL  N+   +ADFG A  L +     
Sbjct: 130 ---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKH 169

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 51/274 (18%), Positives = 82/274 (29%), Gaps = 94/274 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP-----DGKVVALKKLHQSETE-DSAFV------KSFQ 93
                   +G G +GSV            G +VA+K+L  S  +    F       K+  
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 82

Query: 94  -------------------------------------NEAHV-------LSTSVAHALSY 109
                                                + A +        S+ +   + Y
Sbjct: 83  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 142

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDT-LPQVN 168
           L    +   VHRD+++ NIL++S     +ADFG A+LL +D     Y         P   
Sbjct: 143 LG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD---YYVVREPGQSP--- 193

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHP---G 224
                I +YA               E     + + + DV+SFGVV  ++           
Sbjct: 194 -----IFWYAP--------------ESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS 234

Query: 225 ELLSSLSSSSGPKIMLIDVLDQ-----RLSPPVN 253
                +         L  +L+      RL  P  
Sbjct: 235 AEFLRMMGCERDVPALSRLLELLEEGQRLPAPPA 268

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 64/172 (37%)

Query: 29  VWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSA 87
           V++ +  ++++        F I   IG G +G V   +  D  K+ A+K +++ +  +  
Sbjct: 5   VFDENEDVNFDH-------FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERN 57

Query: 88  FVKSFQNEAHVLSTSVAH------------------------------------------ 105
            V++   E  ++   + H                                          
Sbjct: 58  EVRNVFKELQIMQ-GLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEET 116

Query: 106 ----------ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
                     AL YL       I+HRD+  +NILLD +    + DF  A +L
Sbjct: 117 VKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAML 165

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 36/96 (37%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS----------- 151
           +   + Y+H   +  +++RD+  +NI L    +  + DFG    L  D            
Sbjct: 131 ITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRY 187

Query: 152 ------SNRPYE-----WALTDTLPQVNKIIGCISY 176
                 S++ Y      +AL           G I  
Sbjct: 188 MSPEQISSQDYGKEVDLYAL-----------GLILA 212

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 16/68 (23%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
            +F     IG+GG+G V+KA+   DGK   +K++  +        +  + E   L+    
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAK--- 60

Query: 105 HALSYLHH 112
                L H
Sbjct: 61  -----LDH 63

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 62/168 (36%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK------------------------- 76
            +   + +   +G G   +V++      G + A+K                         
Sbjct: 6   TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN 65

Query: 77  -----KLHQSETEDSA-----------------FVKSFQN-------EAHVLSTSVAHAL 107
                KL   E E +                   ++   N       E  ++   V   +
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGM 125

Query: 108 SYLHHDCTLSIVHRDISSNNILLDSNLEAF----VADFGTARLLHVDS 151
           ++L       IVHR+I   NI+     +      + DFG AR L  D 
Sbjct: 126 NHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 42/233 (18%), Positives = 71/233 (30%), Gaps = 86/233 (36%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDS------------ 86
           +E +     +G+G YG V    +       A+K      +  S                 
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 87  ----AFVKSFQNEAHV-----------------------------LSTSVAHALSYLHHD 113
                    F+++ +                              +   V   ++YLH  
Sbjct: 96  PNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHK- 154

Query: 114 CTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
              +IVHRD+   N+LL+S  +     + DFG + +                    + + 
Sbjct: 155 --HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK--------------MKER 198

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           +G   Y A           P  +   Y     EKCDV+S GV+   +L G  P
Sbjct: 199 LGTAYYIA-----------PEVLRKKY----DEKCDVWSIGVILFILLAGYPP 236

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 35  KISYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQ 93
           +I    L +    F +   +G G YG VYK   +  G++ A+K +  +  E+    +  +
Sbjct: 13  EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE----EEIK 68

Query: 94  NEAHVLSTSVAH 105
            E ++L     H
Sbjct: 69  QEINMLKKYSHH 80

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
             LS+LH      ++HRDI   N+LL  N E  + DFG +  L
Sbjct: 140 RGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 179

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 44/224 (19%), Positives = 71/224 (31%), Gaps = 83/224 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP-----DGKVVALKKL-HQSETEDSAFV------KSFQ 93
                   +G G +GSV            G+VVA+KKL H +E     F       KS Q
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 69

Query: 94  -------------------------------------NEAHV-------LSTSVAHALSY 109
                                                ++  +        ++ +   + Y
Sbjct: 70  HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEY 129

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNK 169
           L    T   +HRD+++ NIL+++     + DFG  ++L  D     ++       P    
Sbjct: 130 LG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF--FKVKEPGESP---- 180

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
               I +YA               E       +   DV+SFGVV
Sbjct: 181 ----IFWYAP--------------ESLTESKFSVASDVWSFGVV 206

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 53/154 (34%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKL---HQSETED----SAF--VKSFQNEAH---VLS 100
           +G G + +VYKA +    ++VA+KK+   H+SE +D    +A   +K  Q  +H   +  
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77

Query: 101 TSVAHALS-------YLHHD-----------CTLSIV--------------------HRD 122
                  S       ++  D            T S +                    HRD
Sbjct: 78  LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRD 137

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           +  NN+LLD N    +ADFG A+     S NR Y
Sbjct: 138 LKPNNLLLDENGVLKLADFGLAK--SFGSPNRAY 169

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 56/173 (32%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSA--------FVKSFQNE 95
           + +F +K  +G G YG V  A   P G++VA+KK+   +    A         +K F++E
Sbjct: 10  SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHE 69

Query: 96  -------------------------------AHVLST---SVAH----------ALSYLH 111
                                            V+ST   S  H          A+  LH
Sbjct: 70  NIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLH 129

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
                +++HRD+  +N+L++SN +  V DFG AR++   +++          +
Sbjct: 130 ---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGM 179

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 38/243 (15%), Positives = 65/243 (26%), Gaps = 88/243 (36%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK------------------------- 76
            +   + +   +G G   +V++      G + A+K                         
Sbjct: 6   TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN 65

Query: 77  -----KLHQSETEDSA-----------------FVKSFQN-------EAHVLSTSVAHAL 107
                KL   E E +                   ++   N       E  ++   V   +
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGM 125

Query: 108 SYLHHDCTLSIVHRDISSNNILLDSNLEAF----VADFGTARLLHVDSSNRPYEWALTDT 163
           ++L       IVHR+I   NI+     +      + DFG AR L  D             
Sbjct: 126 NHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE------------ 170

Query: 164 LPQVNKIIGCISYYA---LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG 220
             Q   + G   Y           R +    +             D++S GV       G
Sbjct: 171 --QFVSLYGTEEYLHPDMYERAVLRKDHQKKY---------GATVDLWSIGVTFYHAATG 219

Query: 221 THP 223
           + P
Sbjct: 220 SLP 222

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 56/202 (27%)

Query: 6   LLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKA 65
           LL +  +         K    F  W     +  +++    ++F I   IG G +  V   
Sbjct: 21  LLGVHQELGASELAQDKYVADFLQWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAVV 80

Query: 66  ELPD-GKVVALKKLHQSET---EDSAFVK-------------------SFQNEAHV---- 98
           ++   G+V A+K +++ +     + +  +                   +FQ+E ++    
Sbjct: 81  KMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVM 140

Query: 99  ------------------LSTSVAH--------ALSYLHHDCTLSIVHRDISSNNILLDS 132
                             +   +A         A+  +H    L  VHRDI  +NILLD 
Sbjct: 141 EYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDR 197

Query: 133 NLEAFVADFGTARLLHVDSSNR 154
                +ADFG+   L  D + R
Sbjct: 198 CGHIRLADFGSCLKLRADGTVR 219

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 51/159 (32%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETED----SAF--VKSFQNEAH- 97
           E +     +G G Y +VYK +      +VALK++   E E+    +A   V   ++  H 
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRL-EHEEGAPCTAIREVSLLKDLKHA 60

Query: 98  --VLSTSVAHALS-------YLHHD---------CTLS---------------------- 117
             V    + H          YL  D           ++                      
Sbjct: 61  NIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK 120

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           ++HRD+   N+L++   E  +ADFG AR   +    + Y
Sbjct: 121 VLHRDLKPQNLLINERGELKLADFGLARAKSIP--TKTY 157

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 45/224 (20%), Positives = 71/224 (31%), Gaps = 83/224 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP-----DGKVVALKKL-HQSETEDSAFV------KSFQ 93
                   +G G +GSV            G+VVA+KKL H +E     F       KS Q
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 100

Query: 94  -------------------------------------NEAHV-------LSTSVAHALSY 109
                                                ++  +        ++ +   + Y
Sbjct: 101 HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEY 160

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNK 169
           L    T   +HRD+++ NIL+++     + DFG  ++L  D     Y+       P    
Sbjct: 161 LG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE--YYKVKEPGESP---- 211

Query: 170 IIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
               I +YA               E       +   DV+SFGVV
Sbjct: 212 ----IFWYAP--------------ESLTESKFSVASDVWSFGVV 237

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 60/158 (37%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALK--KLHQSE---------------------------- 82
           +G G YG VYKA +    + VA+K  +L   E                            
Sbjct: 42  LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSV 101

Query: 83  --TEDSAFV---------KSFQNEAHVLSTSVA--------HALSYLHHDCTLSIVHRDI 123
                   +         K + ++   +S  V         + +++ H       +HRD+
Sbjct: 102 IHHNHRLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDL 158

Query: 124 SSNNILLDSNLEAF-----VADFGTARLLHVDSSNRPY 156
              N+LL  +  +      + DFG AR   +    R +
Sbjct: 159 KPQNLLLSVSDASETPVLKIGDFGLARAFGIP--IRQF 194

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 57/157 (36%)

Query: 54  IGTGGYGSVYKAELPDGKVVALKKLHQ----------------------------SETED 85
           IG G +G V++A+L +   VA+KK+ Q                            S  + 
Sbjct: 48  IGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDK 107

Query: 86  SAFV-----------------KSFQNEAHVLSTSVAHALSY--------LHHDCTLSIVH 120
              V                 + +      +   +     Y        +H   ++ I H
Sbjct: 108 KDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICH 164

Query: 121 RDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRPY 156
           RDI   N+LLD       + DFG+A++L     N  Y
Sbjct: 165 RDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSY 201

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 34/124 (27%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYEWA 159
           ++ AL YLH      I+HRD+   NI+L    +     + D G A+ L            
Sbjct: 130 ISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE-------- 178

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
           L          +G + Y A           P   EL      T   D +SFG +A + + 
Sbjct: 179 LCTEF------VGTLQYLA-----------P---ELLEQKKYTVTVDYWSFGTLAFECIT 218

Query: 220 GTHP 223
           G  P
Sbjct: 219 GFRP 222

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 56/202 (27%)

Query: 6   LLALKNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKA 65
           L+ L ++      R  KN   +  W        + +    E+F I   IG G +G V   
Sbjct: 34  LICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVV 93

Query: 66  ELPD-GKVVALKKLHQSE---TEDSAFVK-------------------SFQNEAHV---- 98
           +L +  KV A+K L++ E     ++A  +                   +FQ++ ++    
Sbjct: 94  KLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVM 153

Query: 99  ------------------LSTSVAH--------ALSYLHHDCTLSIVHRDISSNNILLDS 132
                             L   +A         A+  +H    L  VHRDI  +NIL+D 
Sbjct: 154 DYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDM 210

Query: 133 NLEAFVADFGTARLLHVDSSNR 154
           N    +ADFG+   L  D + +
Sbjct: 211 NGHIRLADFGSCLKLMEDGTVQ 232

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 58/150 (38%)

Query: 54  IGTGGYGSVYKA--ELPDGKVVALKKLHQSETED----SA-----FVKSFQNEAH----- 97
           IG G YG V+KA      G+ VALK++     E+    S       ++  +   H     
Sbjct: 19  IGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVR 78

Query: 98  ---VLSTSVAHALS-------YLHHD----------CTLS-------------------- 117
              V + S     +       ++  D            +                     
Sbjct: 79  LFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 138

Query: 118 --IVHRDISSNNILLDSNLEAFVADFGTAR 145
             +VHRD+   NIL+ S+ +  +ADFG AR
Sbjct: 139 HRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 64/167 (38%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDSAFVKSFQNEAHV 98
            +E+ +   +G+G  G V  A E    K VA+K     K       ++    + + E  +
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 99  LSTSVAH---------------------------------------------------AL 107
           L   + H                                                   A+
Sbjct: 69  L-KKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAV 127

Query: 108 SYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDS 151
            YLH      I+HRD+   N+LL S  E     + DFG +++L   S
Sbjct: 128 QYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 171

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 51/151 (33%)

Query: 54  IGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-------VKSFQNEAH---VLSTSV 103
           +G G YG VYKA+   G++VALK++   + ED          +   +   H   V    V
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIRL-DAEDEGIPSTAIREISLLKELHHPNIVSLIDV 87

Query: 104 AHALS-------YLHHD-----------CTLSIV--------------------HRDISS 125
            H+         ++  D              S +                    HRD+  
Sbjct: 88  IHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKP 147

Query: 126 NNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            N+L++S+    +ADFG AR   +    R Y
Sbjct: 148 QNLLINSDGALKLADFGLARAFGIP--VRSY 176

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 55/160 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSE-----------TEDSAFVK--- 90
           E+F     +G G + +V  A EL   +  A+K L +              E     +   
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89

Query: 91  --------SFQNEAHV---------------LSTS--------------VAHALSYLHHD 113
                   +FQ++  +               +                 +  AL YLH  
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH-- 147

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
               I+HRD+   NILL+ ++   + DFGTA++L  +S  
Sbjct: 148 -GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 186

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 32/235 (13%), Positives = 60/235 (25%), Gaps = 102/235 (43%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL--------PDGKVVALKKLHQSETEDSAFVKSFQNEAH 97
           E+      +G G +  ++K                V LK L ++    S   +SF   A 
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS---ESFFEAAS 64

Query: 98  VLSTSVAHA---------------------------LSYLH-HDCTLSI----------- 118
           ++S  ++H                             +YL  +   ++I           
Sbjct: 65  MMSK-LSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLA 123

Query: 119 -----------VHRDISSNNILLDSNLEAF--------VADFGTARLLHVDSSNR-PYEW 158
                      +H ++ + NILL    +          ++D G +  +      +    W
Sbjct: 124 AAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPW 183

Query: 159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                 P+      CI                               D +SFG  
Sbjct: 184 ----VPPE------CIENPKN-L--------------------NLATDKWSFGTT 207

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 52/152 (34%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAF-------VKSFQNEAH---VLSTS 102
           IG G YG+V+KA      ++VALK++   + +D          +   +   H   V    
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRL-DDDDEGVPSSALREICLLKELKHKNIVRLHD 68

Query: 103 VAHALS-------YLHHD-----------CTLSIV--------------------HRDIS 124
           V H+         +   D               IV                    HRD+ 
Sbjct: 69  VLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK 128

Query: 125 SNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
             N+L++ N E  +A+FG AR   +    R Y
Sbjct: 129 PQNLLINRNGELKLANFGLARAFGIP--VRCY 158

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 37/151 (24%), Positives = 49/151 (32%), Gaps = 51/151 (33%)

Query: 54  IGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAF-------VKSFQNEAH---VLSTSV 103
           IG G YG VYKA+   G+  ALKK+   E ED          +   +   H   V    V
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRL-EKEDEGIPSTTIREISILKELKHSNIVKLYDV 68

Query: 104 AHALS-------YLHHD-----------CTLSIV--------------------HRDISS 125
            H          +L  D                                     HRD+  
Sbjct: 69  IHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKP 128

Query: 126 NNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            N+L++   E  +ADFG AR   +    R Y
Sbjct: 129 QNLLINREGELKIADFGLARAFGIP--VRKY 157

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           V ++ SY+H+    +I HRD+  +NIL+D N    ++DFG
Sbjct: 160 VLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFG 197

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 44/233 (18%), Positives = 74/233 (31%), Gaps = 86/233 (36%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDS------------ 86
            E ++I   +G G +G V K  +    +  A+K          +T               
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 87  ----AFVKSFQNEAHV-----------------------------LSTSVAHALSYLHHD 113
                  +  ++ +                               +   V   ++Y+H  
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK- 139

Query: 114 CTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
              +IVHRD+   NILL+S  +     + DFG +     ++              ++   
Sbjct: 140 --HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--------------KMKDR 183

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           IG   Y A           P  +   Y     EKCDV+S GV+   +L GT P
Sbjct: 184 IGTAYYIA-----------PEVLRGTY----DEKCDVWSAGVILYILLSGTPP 221

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 29/122 (23%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + +L    +   +HRD+++ NILL       + DFG AR ++ D     Y      
Sbjct: 202 VAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD---YVRKGDA 255

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGT 221
            LP              W        M    E  +  V T + DV+SFGV+  ++  +G 
Sbjct: 256 RLP------------LKW--------MA--PETIFDRVYTIQSDVWSFGVLLWEIFSLGA 293

Query: 222 HP 223
            P
Sbjct: 294 SP 295

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 30/133 (22%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV--ADFGTARLLHVDSS 152
               +   +  AL YLH+     I HRDI   N L  +N    +   DFG ++  +  ++
Sbjct: 169 LISNIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN 225

Query: 153 NRPYEWALTDTLPQVNKIIGCISYYA--LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF 210
              Y               G   + A  +                 Y      KCD +S 
Sbjct: 226 GEYYGM---------TTKAGTPYFVAPEVLNTTNES----------Y----GPKCDAWSA 262

Query: 211 GVVALKVLMGTHP 223
           GV+   +LMG  P
Sbjct: 263 GVLLHLLLMGAVP 275

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 46/244 (18%), Positives = 69/244 (28%), Gaps = 97/244 (39%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLH----------QSETEDSAFVKSFQ 93
            E +     +G+G YG V    E       A+K +                   F +   
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 94  NEAHVLST---------------------------------------------------S 102
           NE  +L +                                                    
Sbjct: 95  NEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQ 154

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYEWA 159
           +   + YLH     +IVHRDI   NILL++        + DFG +     D         
Sbjct: 155 ILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY-------- 203

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 ++   +G   Y A           P  ++  Y     EKCDV+S GV+   +L 
Sbjct: 204 ------KLRDRLGTAYYIA-----------PEVLKKKY----NEKCDVWSCGVIMYILLC 242

Query: 220 GTHP 223
           G  P
Sbjct: 243 GYPP 246

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL 147
           E   +  ++   +  LH    L+IVHRD+   NILLD ++   + DFG +  L
Sbjct: 125 ETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 174

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRPY 156
           A+ ++H   +L I HRDI   N+L++S      + DFG+A+ L     +  Y
Sbjct: 153 AVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAY 201

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           +  A+ YL       I+HRDI   NI++  +    + DFG+A  L    
Sbjct: 139 LVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGK 184

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 105 HALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL--LHVDSSNRPY 156
           + L Y+H +    I+HRD+ + N+L+  +    +ADFG AR   L  +S    Y
Sbjct: 135 NGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 185

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 46 EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLH-QSETE 84
           ++     IG G +G V+KA     G+ VALKK+  ++E E
Sbjct: 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE 57

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           E   +  S+  A+S+LH     +IVHRD+   NILLD N++  ++DFG +  L    
Sbjct: 201 ETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE 254

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           A+ Y H      IVHRD+   N+LLD NL   +ADFG + ++   +
Sbjct: 120 AIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
           A+ Y H      +VHRD+   N+LLD+++ A +ADFG + ++    
Sbjct: 123 AVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 38/116 (32%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL    + + +HRD+++ N +L  ++   VADFG +R ++              
Sbjct: 146 IACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSG------------ 190

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
                        YY         + +P  V     E     + T   DV++FGV 
Sbjct: 191 ------------DYY----RQGCASKLP--VKWLALESLADNLYTVHSDVWAFGVT 228

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
            L YLH      IVH+DI   N+LL +     ++  G A  LH
Sbjct: 121 GLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAEALH 160

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 57/160 (35%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDS------------ 86
           TEE+ +   +G G +  V +  ++  G+  A       KL   + +              
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 87  ----AFVKSFQNEAHV-----------------------------LSTSVAHALSYLHHD 113
                   S   E H                                  +  A+ + H  
Sbjct: 70  PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCH-- 127

Query: 114 CTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVD 150
             + +VHR++   N+LL S L+     +ADFG A  +  +
Sbjct: 128 -QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLD-SNLEAFVADFGTARLLHVDSSNRPY 156
           ++  LH   ++++ HRDI  +N+L++ ++    + DFG+A+ L     N  Y
Sbjct: 141 SIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAY 191

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
            + YLH+     I+HRDI  +N+L+  +    +ADFG +    
Sbjct: 149 GIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFK 188

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 38/116 (32%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  ++YL+       VHRD+++ N ++  +    + DFG  R ++              
Sbjct: 147 IADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET------------ 191

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
                        YY          L+P  V     E     V T   DV+SFGVV
Sbjct: 192 ------------DYY----RKGGKGLLP--VRWMSPESLKDGVFTTYSDVWSFGVV 229

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 72/181 (39%)

Query: 50  IKYCIGTGGYGSVYKA---ELPDGKVVA-------------------LKKLH-------- 79
               +G G YG VYKA   +  D K  A                   L++L         
Sbjct: 25  EGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQ 84

Query: 80  ---QSETEDSAF------------------VKSFQNEAHVLSTSVA--------HALSYL 110
               S  +   +                        +   L   +           + YL
Sbjct: 85  KVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYL 144

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAF----VADFGTARLLHVDSSNRPYEWALTDTLPQ 166
           H +    ++HRD+   NIL+           +AD G ARL +  S  +P      D  P 
Sbjct: 145 HANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFN--SPLKPL----ADLDPV 195

Query: 167 V 167
           V
Sbjct: 196 V 196

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 38/116 (32%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL      + +HRD+++ N +L  ++   VADFG ++ ++              
Sbjct: 156 IALGMEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSG------------ 200

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----ELAYTMVVTEKCDVYSFGVV 213
                        YY       R   MP  V     E     V T K DV++FGV 
Sbjct: 201 ------------DYY----RQGRIAKMP--VKWIAIESLADRVYTSKSDVWAFGVT 238

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 29/118 (24%)

Query: 38  YEDLINATEEFHI--KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           YE+L    +   I  +     GG       EL   ++        +E E S  +KS    
Sbjct: 124 YENLYAGRKCLLIVMECL--DGG-------ELFS-RIQDRGDQAFTEREASEIMKS---- 169

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVD 150
                  +  A+ YLH   +++I HRD+   N+L  S        + DFG A+     
Sbjct: 170 -------IGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH 217

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
            + Y H      +VHRD+   N+LLD+++ A +ADFG + ++    
Sbjct: 128 GVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 57/155 (36%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDS------------ 86
            E ++I   +G G +G V K  +    +  A+K          +T               
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 87  ----AFVKSFQNEAHV-----------------------------LSTSVAHALSYLHHD 113
                  +  ++ +                               +   V   ++Y+H  
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMH-- 138

Query: 114 CTLSIVHRDISSNNILLDSNLEAF---VADFGTAR 145
              +IVHRD+   NILL+S  +     + DFG + 
Sbjct: 139 -KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 29/116 (25%)

Query: 38  YEDLINATEEFHI--KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           YE++ +      I  +     GG       EL   ++    +  Q+ TE  A        
Sbjct: 91  YENMHHGKRCLLIIMECM--EGG-------ELFS-RIQE--RGDQAFTEREA-------- 130

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
           A ++   +  A+ +LH   + +I HRD+   N+L  S  +     + DFG A+   
Sbjct: 131 AEIMRD-IGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT 182

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + +L    +   +HRD+++ NILL       + DFG AR ++ D            
Sbjct: 157 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD------------ 201

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                         Y      +    +P      E  +  V T + DV+SFGV+
Sbjct: 202 ------------PDY----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVL 239

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 94  NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
            EA      +  A+ Y H      IVHRD+ + N+LLD+++   +ADFG
Sbjct: 114 KEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFG 159

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 61/168 (36%)

Query: 39  EDLINATEEFHIKY----CIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDS-- 86
           E ++NA+ +F   Y     +G G +  V +      G   A K     KL   + +    
Sbjct: 18  EFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLER 77

Query: 87  --------------AFVKSFQNEAHV-----------------------------LSTSV 103
                             S Q E+                                   +
Sbjct: 78  EARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQI 137

Query: 104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
             +++Y H   +  IVHR++   N+LL S  +     +ADFG A  ++
Sbjct: 138 LESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 54/149 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSE-----------TEDSAFVK--- 90
            EF     +G G +G V   +    G+  A+K L +             TE+        
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH 207

Query: 91  --------SFQNEAHV---------------LSTS--------------VAHALSYLHHD 113
                   SFQ    +               LS                +  AL YLH +
Sbjct: 208 PFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSE 267

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFG 142
              ++V+RD+   N++LD +    + DFG
Sbjct: 268 --KNVVYRDLKLENLMLDKDGHIKITDFG 294

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            L++ H      ++HRD+   N+L+++     +ADFG AR   V    R Y
Sbjct: 115 GLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTY 160

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            L++ H +    I+HRD+   N+L++   +  + DFG AR   +      +
Sbjct: 120 GLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFGI--PVNTF 165

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL    +   +HRD+++ N+L+  N    +ADFG AR ++              
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI------------ 210

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                        YY        +  +P      E  +  V T + DV+SFGV+
Sbjct: 211 ------------DYY----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
            L Y+H   + +++HRD+  +N+LL++  +  + DFG AR+   D  +  +   LT+
Sbjct: 140 GLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGF---LTE 190

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
           A+++ H     + +HRD+   NIL+  +    + DFG ARLL     +  Y
Sbjct: 114 AVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLT--GPSDYY 159

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 75/169 (44%)

Query: 45  TEEFHIKYCI----GTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDSAFVKSFQN 94
           + +F   Y +    G G +  V +      G   A K     KL   + +        + 
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK------LER 54

Query: 95  EAHVLSTSVAH------------------------------------------------- 105
           EA +    + H                                                 
Sbjct: 55  EARIC-RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQ 113

Query: 106 ---ALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
              +++Y H   +  IVHR++   N+LL S  +     +ADFG A  ++
Sbjct: 114 ILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL    +   +HRD+++ N+L+  N    +ADFG AR ++              
Sbjct: 212 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI------------ 256

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                        YY        +  +P      E  +  V T + DV+SFGV+
Sbjct: 257 ------------DYY----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 294

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 53/158 (33%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSET-------------------- 83
           T+ + +K  IG G Y    +          A+K + +S+                     
Sbjct: 21  TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIIT 80

Query: 84  -----EDSAFV-------------------KSF-QNEAHVLSTSVAHALSYLHHDCTLSI 118
                +D  +V                   K F + EA  +  ++   + YLH      +
Sbjct: 81  LKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGV 137

Query: 119 VHRDISSNNILLDSNLEAF----VADFGTARLLHVDSS 152
           VHRD+  +NIL            + DFG A+ L  ++ 
Sbjct: 138 VHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG 175

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 55/156 (35%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKS------------ 91
            + F     +G+G +  V+   +   GK+ ALK + +S     + +++            
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67

Query: 92  -------FQNEAHV-----------------------------LSTSVAHALSYLHHDCT 115
                  +++  H                              +   V  A+ YLH    
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLH---E 124

Query: 116 LSIVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
             IVHRD+   N+L  +  E     + DFG +++  
Sbjct: 125 NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  +++L    + + +HRD+++ NILL       + DFG AR +  D            
Sbjct: 154 VAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKND------------ 198

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                       S Y      + +  +P      E  +  V T + DV+S+G+ 
Sbjct: 199 ------------SNY----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 236

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 61/171 (35%)

Query: 45  TEEFHIKY-----CIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSET---------- 83
           +  F   Y      +G G +  V     L   +  A+K       H              
Sbjct: 7   SGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQ 66

Query: 84  --------------EDSAFV-------------------KSF-QNEAHVLSTSVAHALSY 109
                         E+                       + F + EA V+   VA AL +
Sbjct: 67  CQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDF 126

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLHVDSSNRPYE 157
           LH      I HRD+   NIL +   +     + DF     + ++    P  
Sbjct: 127 LH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPIS 174

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 29/112 (25%)

Query: 38  YEDLINATEEFHI--KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           YE+L    +   I  +     GG       EL   ++        +E E S  +KS    
Sbjct: 80  YENLYAGRKCLLIVMECL--DGG-------ELFS-RIQDRGDQAFTEREASEIMKS---- 125

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTA 144
                  +  A+ YLH   +++I HRD+   N+L  S        + DFG A
Sbjct: 126 -------IGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 59/157 (37%)

Query: 45  TEEFHIKYCI----GTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKS-------- 91
             + +  Y +    G G +G V  A +       A KK+ +   ED    K         
Sbjct: 4   KGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL 63

Query: 92  -----------FQNEAHV-----------------------------LSTSVAHALSYLH 111
                      F++   +                             +   V  A++Y H
Sbjct: 64  DHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCH 123

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAF---VADFGTAR 145
               L++ HRD+   N L  ++       + DFG A 
Sbjct: 124 K---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA 157

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            + + H     +I+HRDI   NIL+  +    + DFG AR L        Y
Sbjct: 136 GIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP--GEVY 181

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS 151
            L  LH      +VHRD+   NILL  N +  + DF  AR    D+
Sbjct: 146 GLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA 188

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH 97
             + ++  I +G YG+V      +G  VA+K++  +   D   V    +   
Sbjct: 21 QSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNT-VSDGRTVNILSDSFL 72

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + YL    +   +HRD+++ N+L+  +    +ADFG AR +H              
Sbjct: 200 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI------------ 244

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                        YY        +  +P      E  +  + T + DV+SFGV+
Sbjct: 245 ------------DYY----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 282

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY 156
            + +LH   +  I+HRD+  +NI++ S+    + DFG AR         PY
Sbjct: 176 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 223

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLH 148
           V  A+ + H      +VHRDI   NIL+D     A + DFG+  LLH
Sbjct: 148 VVAAIQHCHS---RGVVHRDIKDENILIDLRRGCAKLIDFGSGALLH 191

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP 165
             +++H      I+HRD+   N LL+ +    V DFG AR ++ +           +  P
Sbjct: 141 GENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEP 197

Query: 166 QVNK 169
             + 
Sbjct: 198 GPHN 201

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           ++  + YL     + +VHRD+++ NIL+    +  ++DFG +R ++ +            
Sbjct: 159 ISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE------------ 203

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                         Y      +    +P     +E  +  + T + DV+SFGV+
Sbjct: 204 ------------DSY----VKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVL 241

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
            + YLH    + I HRDI   N+LLD      ++DFG
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFG 150

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            L Y+H      I+HRD+   N+ ++ + E  + DFG AR
Sbjct: 140 GLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLH 148
           V  A+ + H      ++HRDI   NIL+D N  E  + DFG+  LL 
Sbjct: 158 VLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 201

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 40/117 (34%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + YL     L  VHRD+++ N L+   L   + DFG +R ++              
Sbjct: 167 VAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST------------ 211

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----E-LAYTMVVTEKCDVYSFGVV 213
                        YY          ++P  +     E + Y    T + DV+SFGVV
Sbjct: 212 ------------DYYR----VGGRTMLP--IRWMPPESILYR-KFTTESDVWSFGVV 249

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
            + YLH    + I HRDI   N+LLD      ++DFG
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFG 150

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 33/115 (28%)

Query: 38  YEDLINATEEFHI--KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           YE+    T E  +  +Y    GG       E+     +       SE +    +K     
Sbjct: 98  YEN----TSEIILILEYA--AGG-------EIFS-LCLPELAEMVSENDVIRLIK----- 138

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLL 147
             +L       + YLH     +IVH D+   NILL S        + DFG +R +
Sbjct: 139 -QILE-----GVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI 184

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            L Y+H   +  +VHRD+   N+ ++ + E  + DFG AR
Sbjct: 138 GLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            L Y+H   +  I+HRD+  +N+ ++ + E  + DFG AR
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 53/166 (31%)

Query: 30  WNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKL---------- 78
           W+Y+   S+       +++ +   +G G Y  V++A  + + + V +K L          
Sbjct: 23  WDYE---SHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR 79

Query: 79  ---------------------HQSETEDSAFVKSFQNEA--HVL--STSVAH-------- 105
                                    +   A V    N      L  + +           
Sbjct: 80  EIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI 139

Query: 106 --ALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLH 148
             AL Y H   ++ I+HRD+  +N+++D  + +  + D+G A   H
Sbjct: 140 LKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 182

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 60/194 (30%)

Query: 10  KNKTPKLNSRAAKNGDVFSVWNYDGKISYEDLINATEEFHIKYCI----GTGGYGSVYKA 65
                K +     + D F   +   K   + +       +  Y I    G+G +G V++ 
Sbjct: 12  SKVRGKYDGPKINDYDKF-YEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRC 70

Query: 66  -ELPDGKVVALKKLHQSETEDSAFVK-------------------SFQN----------- 94
            E   G+V   K ++     D   VK                   +F++           
Sbjct: 71  VEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130

Query: 95  -----------EAHVLSTSVA--------HALSYLHHDCTLSIVHRDISSNNILLDSNLE 135
                      E + +S +            L ++H     SIVH DI   NI+ ++   
Sbjct: 131 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKA 187

Query: 136 AFV--ADFGTARLL 147
           + V   DFG A  L
Sbjct: 188 SSVKIIDFGLATKL 201

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNRPYEWALTD 162
            L Y+H   + +++HRD+   N+ +++ +L   + DFG AR++    S++ +   L++
Sbjct: 132 GLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGH---LSE 183

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 55/151 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALK--------KLHQSE---TE-------DS 86
           ++F     +GTG +G V   +    G   A+K        KL Q E    E       + 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 87  AFV----KSFQNEAH---VL--------------------------STSVAHALSYLHHD 113
            F+     SF++ ++   V+                          +  +     YLH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHS- 159

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
             L +++RD+   N+L+D      V DFG A
Sbjct: 160 --LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 34/114 (29%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  + +L      S VHRD+++ N+L+       + DFG AR +  D            
Sbjct: 181 VAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD------------ 225

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFH---VELAYTMVVTEKCDVYSFGVV 213
                       S Y      + +  +P      E  +  + T K DV+S+G++
Sbjct: 226 ------------SNY----VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL 263

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 31/113 (27%)

Query: 38  YEDLINATEEFHI--KYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNE 95
           +ED        +I  + C   GG       EL + ++V+ +   ++ +E           
Sbjct: 89  FED----YHNMYIVMETC--EGG-------ELLE-RIVSAQARGKALSEG---------Y 125

Query: 96  AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTAR 145
              L   + +AL+Y H      +VH+D+   NIL           + DFG A 
Sbjct: 126 VAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 55/153 (35%)

Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKS-------------- 91
                  +G G +G V+K  E   G  +A K +     +D   VK+              
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 92  -----FQNEAHV------------------------------LSTSVAHALSYLHHDCTL 116
                F+++  +                                  +   + ++H    +
Sbjct: 150 QLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQ---M 206

Query: 117 SIVHRDISSNNILLDSNLEAFV--ADFGTARLL 147
            I+H D+   NIL  +     +   DFG AR  
Sbjct: 207 YILHLDLKPENILCVNRDAKQIKIIDFGLARRY 239

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP 155
            + YLH   +  ++HRD+  +NILL++     VADFG +R          
Sbjct: 121 VIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTN 167

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 28/111 (25%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  +++L    + + +HRD+++ N+LL +   A + DFG AR +  DS+      A   
Sbjct: 173 VAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNAR-- 227

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
            LP        +     W        M    E  +  V T + DV+S+G++
Sbjct: 228 -LP--------VK----W--------MA--PESIFDCVYTVQSDVWSYGIL 255

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 57/151 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLH----------QSETEDSAFVK- 90
            +F +   +G G +G V+  +        ++ A+K L           +++ E    V+ 
Sbjct: 24  SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV 83

Query: 91  ----------SFQNEAHV---------------LSTS--------------VAHALSYLH 111
                     +FQ E  +               LS                +A AL +LH
Sbjct: 84  NHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH 143

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
              +L I++RD+   NILLD      + DFG
Sbjct: 144 ---SLGIIYRDLKPENILLDEEGHIKLTDFG 171

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP 155
            + Y+H   +  I+HRD+   N L++ +    V DFG AR +    +   
Sbjct: 168 GVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNS 214

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 45 TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLH 79
           + + I++ IGTG YG V +A +  + +VVA+KK+ 
Sbjct: 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKIL 87

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 53/148 (35%)

Query: 54  IGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETE---------------------DS 86
           +G G +    K       +  A+K         ++ E                     D 
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQ 78

Query: 87  AFV-------------------KSF-QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSN 126
                                 K F + EA  +   +  A+S++H    + +VHRD+   
Sbjct: 79  LHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPE 135

Query: 127 NILLDSNLEAF---VADFGTARLLHVDS 151
           N+L     +     + DFG ARL   D+
Sbjct: 136 NLLFTDENDNLEIKIIDFGFARLKPPDN 163

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
            + +LH   +  I+HRD+  +NI++ S+    + DFG AR
Sbjct: 139 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 53/154 (34%)

Query: 45  TEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDS----------------- 86
           ++ F ++  +G G    VY+  +    K  ALK L ++  +                   
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNII 111

Query: 87  AFVKSFQNEAHV-----------------------------LSTSVAHALSYLHHDCTLS 117
              + F+    +                                 +  A++YLH      
Sbjct: 112 KLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLH---ENG 168

Query: 118 IVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
           IVHRD+   N+L  +        +ADFG ++++ 
Sbjct: 169 IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 64/168 (38%)

Query: 42  INATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALK-----KLHQSETEDSAFVK----- 90
           +   + + +   IG G +  V +      G+  A+K     K   S    +  +K     
Sbjct: 20  VLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASI 79

Query: 91  --------------SFQNEAHV-------------------------LSTSVA------- 104
                         ++ ++  +                          S +VA       
Sbjct: 80  CHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQI 139

Query: 105 -HALSYLHHDCTLSIVHRDISSNNILLDSNLEAF---VADFGTARLLH 148
             AL Y H     +I+HRD+  + +LL S   +    +  FG A  L 
Sbjct: 140 LEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLG 184

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 36/153 (23%), Positives = 50/153 (32%), Gaps = 62/153 (40%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVA---LKKLHQSETEDSAFVKSFQNEAHVLST 101
            +FH    IG G +G V  A         A   L+K    + ++    K   +E +VL  
Sbjct: 38  SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKE---EKHIMSERNVLLK 94

Query: 102 SVAH----------------------------------------------------ALSY 109
           +V H                                                    AL Y
Sbjct: 95  NVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGY 154

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           LH   +L+IV+RD+   NILLDS     + DFG
Sbjct: 155 LH---SLNIVYRDLKPENILLDSQGHIVLTDFG 184

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 40/117 (34%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +A  + YL    +   VHRD+++ N L+ +NL   + DFG +R ++              
Sbjct: 142 IASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST------------ 186

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----E-LAYTMVVTEKCDVYSFGVV 213
                        YY        H ++P  +     E + Y    T + DV+SFGV+
Sbjct: 187 ------------DYYR----VGGHTMLP--IRWMPPESIMYR-KFTTESDVWSFGVI 224

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 55/149 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSE-----------TEDSAFVK--- 90
            +F     +G G +G V        G+  A+K L +             TE         
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 91  --------SFQNEAHV---------------LSTS--------------VAHALSYLHHD 113
                   +FQ    +               LS                +  AL YLH  
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH-- 122

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFG 142
            +  +V+RDI   N++LD +    + DFG
Sbjct: 123 -SRDVVYRDIKLENLMLDKDGHIKITDFG 150

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 59/153 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKL-------HQSETE---------- 84
           E F +   +G GGYG V++         GK+ A+K L       +  +T           
Sbjct: 17  ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILE 76

Query: 85  --DSAF-VK---SFQNEAHV---------------LSTS--------------VAHALSY 109
                F V    +FQ    +               L                 ++ AL +
Sbjct: 77  EVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGH 136

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           LH      I++RD+   NI+L+      + DFG
Sbjct: 137 LH---QKGIIYRDLKPENIMLNHQGHVKLTDFG 166

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 58/154 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLH---------------------QSET 83
            +F +   IG GG+G VY     D GK+ A+K L                         T
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248

Query: 84  EDSAFV----KSFQNEAH---VL--------------------------STSVAHALSYL 110
            D  F+     +F        +L                          +  +   L ++
Sbjct: 249 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 308

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
           H      +V+RD+   NILLD +    ++D G A
Sbjct: 309 H---NRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH 148
           +A  + YL    +  +VH+D+++ N+L+   L   ++D G  R ++
Sbjct: 137 IAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKISDLGLFREVY 179

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 40/117 (34%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           VA  ++YL        VHRD+++ N L+  N+   +ADFG +R ++              
Sbjct: 183 VAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA------------ 227

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----E-LAYTMVVTEKCDVYSFGVV 213
                        YY        ++ +P  +     E + Y    T + DV+++GVV
Sbjct: 228 ------------DYY----KADGNDAIP--IRWMPPESIFYN-RYTTESDVWAYGVV 265

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 57/151 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQS------------------ETEDS 86
             F     +G GG+G V   ++   GK+ A KKL +                   E  +S
Sbjct: 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS 243

Query: 87  AFV----KSFQNEAH---VL----------------------------STSVAHALSYLH 111
            FV     +++ +     VL                            +  +   L  LH
Sbjct: 244 RFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH 303

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
                 IV+RD+   NILLD +    ++D G
Sbjct: 304 ---RERIVYRDLKPENILLDDHGHIRISDLG 331

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 43/120 (35%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV---ADFGTARLLHVDSSNRPYEWA 159
           +A    YL        +HRDI++ N LL       V    DFG AR ++           
Sbjct: 149 IACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA--------- 196

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----E-LAYTMVVTEKCDVYSFGVV 213
                          SYY          ++P  V     E      + T K D +SFGV+
Sbjct: 197 ---------------SYYR----KGGCAMLP--VKWMPPEAFMEG-IFTSKTDTWSFGVL 234

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 56/150 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           ++F +   IG G Y  V    L    ++ A+K + +    D   +   Q E HV   +  
Sbjct: 9   QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN 68

Query: 105 H----------------------------------------------------ALSYLHH 112
           H                                                    AL+YLH 
Sbjct: 69  HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 127

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
                I++RD+  +N+LLDS     + D+G
Sbjct: 128 --ERGIIYRDLKLDNVLLDSEGHIKLTDYG 155

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR 145
           VA  + YL        +HRD+++ NIL+  N  A +ADFG +R
Sbjct: 151 VARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 29/167 (17%), Positives = 43/167 (25%), Gaps = 68/167 (40%)

Query: 45  TEEFHIKYCI----GTGGYGSVYKA-ELPDGKVVALK---KLHQSETEDSAFVKSFQNEA 96
            ++    Y I    G+G +  V K  E   G   A K   K     +      +  + E 
Sbjct: 7   QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV 66

Query: 97  HVLSTSVAH--------------------------------------------------- 105
            +L   V H                                                   
Sbjct: 67  SILR-QVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQIL 125

Query: 106 -ALSYLHHDCTLSIVHRDISSNNILLDSNLEAF----VADFGTARLL 147
             ++YLH   T  I H D+   NI+L           + DFG A  +
Sbjct: 126 DGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI 169

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 56/150 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSE-----------TEDSAFVK--- 90
           E+F +   +G G +G V+ AE     +  A+K L +              E         
Sbjct: 17  EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 76

Query: 91  ---------SFQNEAHV---------------LSTS--------------VAHALSYLHH 112
                    +FQ + ++               + +               +   L +LH 
Sbjct: 77  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 135

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
             +  IV+RD+  +NILLD +    +ADFG
Sbjct: 136 --SKGIVYRDLKLDNILLDKDGHIKIADFG 163

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 55/151 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALK--------KLHQSE---TE-------DS 86
           ++F I   +GTG +G V+      +G+  A+K        +L Q E    E         
Sbjct: 6   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 65

Query: 87  AFV----KSFQNEAH---VL--------------------------STSVAHALSYLHHD 113
            F+     +FQ+      ++                          +  V  AL YLH  
Sbjct: 66  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHS- 124

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTA 144
               I++RD+   NILLD N    + DFG A
Sbjct: 125 --KDIIYRDLKPENILLDKNGHIKITDFGFA 153

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 43/120 (35%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFV---ADFGTARLLHVDSSNRPYEWA 159
           +A    YL        +HRDI++ N LL       V    DFG AR ++           
Sbjct: 190 IACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA--------- 237

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHV-----E-LAYTMVVTEKCDVYSFGVV 213
                           YY          ++P  V     E      + T K D +SFGV+
Sbjct: 238 ---------------GYYR----KGGCAMLP--VKWMPPEAFMEG-IFTSKTDTWSFGVL 275

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 106 ALSYLHHDCTLSIVHRDISSNNILLDSNLEAF--VADFGTARLLHVDS 151
            +SY H    + I HRD+   N LLD +      + DFG ++   + S
Sbjct: 128 GVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS 172

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 56/150 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
            +F+    +G G +G V  +E     ++ A+K L +        V+    E  VL+    
Sbjct: 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGK 400

Query: 105 H----------------------------------------------------ALSYLHH 112
                                                                 L +L  
Sbjct: 401 PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ- 459

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
             +  I++RD+  +N++LDS     +ADFG
Sbjct: 460 --SKGIIYRDLKLDNVMLDSEGHIKIADFG 487

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 56/150 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           ++F +   IG G Y  V    L    ++ A++ + +    D   +   Q E HV   +  
Sbjct: 52  QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASN 111

Query: 105 H----------------------------------------------------ALSYLHH 112
           H                                                    AL+YLH 
Sbjct: 112 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 170

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFG 142
                I++RD+  +N+LLDS     + D+G
Sbjct: 171 --ERGIIYRDLKLDNVLLDSEGHIKLTDYG 198

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 59/153 (38%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQS------------------ETEDS 86
           + F     +G GG+G V+  ++   GK+ A KKL++                       S
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS 244

Query: 87  AFV----KSFQNEAH---VL------------------------------STSVAHALSY 109
            F+     +F+ +     V+                              +  +   L +
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304

Query: 110 LHHDCTLSIVHRDISSNNILLDSNLEAFVADFG 142
           LH     +I++RD+   N+LLD +    ++D G
Sbjct: 305 LH---QRNIIYRDLKPENVLLDDDGNVRISDLG 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.97
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.96
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.96
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.96
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.96
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.96
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.96
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.96
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.96
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.96
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.96
3niz_A	311	Rhodanese family protein; structural genomics, str	99.96
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.96
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.96
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.96
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.96
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.96
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.96
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.96
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.95
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.95
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.95
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.95
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.95
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.95
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.95
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.95
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.95
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.95
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.95
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.95
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.95
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.95
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.95
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.95
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.95
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.95
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.95
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.95
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.95
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.95
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.95
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.95
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.95
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.95
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.95
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.95
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.95
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.95
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.95
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.95
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.95
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.95
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.95
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.95
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.95
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.95
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.95
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.95
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.95
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.95
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.95
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.95
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.95
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.94
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.94
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.94
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.94
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.94
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.94
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.94
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.94
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.94
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.94
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.94
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.94
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.94
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.94
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.94
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.94
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.94
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.94
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.94
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.94
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.94
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.94
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.94
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.94
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.94
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.94
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.94
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.94
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.94
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.94
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.94
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.94
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.94
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.94
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.94
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.94
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.94
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.94
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.94
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.94
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.94
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.94
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.94
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.94
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.94
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.94
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.94
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.94
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.94
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.94
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.94
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.94
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.94
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.94
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.94
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.94
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.94
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.94
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.94
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.94
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.94
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.94
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.94
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.94
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.94
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.94
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.94
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.94
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.94
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.94
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.94
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.94
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.94
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.94
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.94
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.94
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.94
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.94
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.94
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.94
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.93
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.93
3bhy_A	283	Death-associated protein kinase 3; death associate	99.93
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.93
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.93
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.93
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.93
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.93
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.93
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.93
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.93
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.93
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.93
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.93
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.93
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.93
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.93
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.93
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.93
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.93
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.93
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.93
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.93
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.93
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.93
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.93
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.93
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.93
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.93
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.93
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.93
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.93
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.93
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.93
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.93
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.92
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.92
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.92
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.92
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.92
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.92
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.92
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.92
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.92
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.92
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.92
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.92
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.92
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.92
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.92
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.92
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.92
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.92
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.92
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.92
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.92
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.91
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.91
3uqc_A	286	Probable conserved transmembrane protein; structur	99.91
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.9
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.9
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.9
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.9
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.89
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.77
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.71
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.7
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.57
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.38
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.15
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.01
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.52
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.52
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.51
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.21
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.08
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	95.34
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.31
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	95.15
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.64
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	94.16
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	90.83
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	87.18
3ats_A	357	Putative uncharacterized protein; hypothetical pro	86.74
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	85.85
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	82.9
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	82.55
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.46
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	81.6

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=6e-38  Score=268.54  Aligned_cols=155  Identities=26%  Similarity=0.465  Sum_probs=127.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.+.........+.+.+|+++                         
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46899999999999999999965 5799999999976533222234567777776                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..||+.||+|||++   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       111 mEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~  187 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  187 (311)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence                                      334899999999999   999999999999999999999999999987643221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..           .....+||+.|+|              ||++.+..|+.++||||+||++|||++|++||.+.
T Consensus       188 ~~-----------~~~~~~GTp~YmA--------------PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          188 QA-----------RANSFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             CC-----------CBCCCCSCGGGCC--------------HHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cc-----------cccCcccCcccCC--------------HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            11           1234689999999              66666677899999999999999999999999864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.2e-37  Score=268.12  Aligned_cols=153  Identities=26%  Similarity=0.377  Sum_probs=122.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~---------------------  101 (257)
                      ..++|++.+.||+|+||+||+|.+ .+|+.||||++....... ...+.+.+|+.+++.                     
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi  100 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSS-KEREESRREVAVLANMKHPNIVQYRESFEENGSLYI  100 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCH-HHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE
Confidence            357999999999999999999965 579999999997665433 335678888887443                     


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      ||+.||.|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  177 (350)
T 4b9d_A          101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS  177 (350)
T ss_dssp             EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred             EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence                                            899999999999   999999999999999999999999999986532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...             .....+||+.|+|              ||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus       178 ~~~-------------~~~~~~GT~~YmA--------------PE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~  228 (350)
T 4b9d_A          178 TVE-------------LARACIGTPYYLS--------------PEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG  228 (350)
T ss_dssp             HHH-------------HHHHHHSCCTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             Ccc-------------cccccCCCccccC--------------HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            110             1133579999999              66666777899999999999999999999999864

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.6e-36  Score=256.07  Aligned_cols=152  Identities=28%  Similarity=0.413  Sum_probs=111.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------------------  101 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----------------------  101 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.+.........+.+.+|+.++..                      
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            36899999999999999999965 4799999999977654444445667788877443                      


Q ss_pred             ----------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          102 ----------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       102 ----------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                  |++.||+|||++   +|+||||||+||+++.++.+||+|||+|+....... 
T Consensus        92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~-  167 (275)
T 3hyh_A           92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF-  167 (275)
T ss_dssp             EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCCCc-
Confidence                                        899999999999   999999999999999999999999999976533221 


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   ....+||+.|+|              ||++.+..+ +.++||||+||++|+|++|+.||.+.
T Consensus       168 -------------~~~~~GT~~Y~A--------------PE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~  215 (275)
T 3hyh_A          168 -------------LKTSCGSPNYAA--------------PEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE  215 (275)
T ss_dssp             --------------------CTTSC--------------HHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------cCCeeECcccCC--------------hhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC
Confidence                         123579999999              555555554 57999999999999999999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.3e-36  Score=262.28  Aligned_cols=150  Identities=27%  Similarity=0.399  Sum_probs=124.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .+.|++.+.||+|+||+||+|.+ .+|+.||||++.......   .+.+.+|+.++                        
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46799999999999999999965 579999999997543332   23455666663                        


Q ss_pred             --------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          100 --------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       100 --------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                ..||+.||+|||++   +|+||||||+|||++.++.+||+|||+++........
T Consensus       150 mEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~  226 (346)
T 4fih_A          150 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  226 (346)
T ss_dssp             ECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred             EeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc
Confidence                                      34899999999999   9999999999999999999999999999876433221


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   ....+||+.|+|              ||++.+..|+.++||||+||++|||++|++||.+.
T Consensus       227 -------------~~~~~GTp~YmA--------------PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  273 (346)
T 4fih_A          227 -------------RKSLVGTPYWMA--------------PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  273 (346)
T ss_dssp             -------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             -------------ccccccCcCcCC--------------HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence                         133679999999              66666667899999999999999999999999864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=263.13  Aligned_cols=151  Identities=26%  Similarity=0.397  Sum_probs=125.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.......   .+.+.+|+.++                        
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            46799999999999999999965 579999999997654332   23456676664                        


Q ss_pred             --------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          100 --------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       100 --------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                ..||+.||.|||++   +|+||||||+|||++.++.+||+|||+++........
T Consensus       227 mEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~  303 (423)
T 4fie_A          227 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  303 (423)
T ss_dssp             EECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC
T ss_pred             EeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc
Confidence                                      34899999999999   9999999999999999999999999999876433221


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                   ....+||+.|||              ||++.+..|+.++|||||||++|||++|++||.+.+
T Consensus       304 -------------~~~~~GTp~YmA--------------PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~  351 (423)
T 4fie_A          304 -------------RKSLVGTPYWMA--------------PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP  351 (423)
T ss_dssp             -------------BCCCEECTTTCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -------------ccccccCcCcCC--------------HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence                         134689999999              666666778999999999999999999999998643

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=254.36  Aligned_cols=161  Identities=30%  Similarity=0.456  Sum_probs=124.1

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      .|....+++++.+.||+|+||+||+|.+..  .||||+++..... .+..+.|.+|+.++                    
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~  106 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPT-PEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNL  106 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSC
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeE
Confidence            345567889999999999999999998753  5999999765433 34467888888873                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     +.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+...
T Consensus       107 ~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  183 (307)
T 3omv_A          107 AIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS  183 (307)
T ss_dssp             EEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred             EEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecc
Confidence                                           44899999999999   99999999999999999999999999998654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......           .....+||+.|||||++...           ...+|+.++|||||||++|||++|+.||.+.+
T Consensus       184 ~~~~~~-----------~~~~~~GT~~ymAPE~l~~~-----------~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~  241 (307)
T 3omv_A          184 RWSGSQ-----------QVEQPTGSVLWMAPEVIRMQ-----------DNNPFSFQSDVYSYGIVLYELMTGELPYSHIN  241 (307)
T ss_dssp             ---------------------CCCCTTSCCHHHHHCC-----------SSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             cCCcce-----------eecccccCCCccCHHHhhcc-----------CCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC
Confidence            322111           12335799999995554321           12347889999999999999999999998653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.9e-36  Score=256.34  Aligned_cols=152  Identities=26%  Similarity=0.365  Sum_probs=117.8

Q ss_pred             ccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccccHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETEDSAFVKSFQNE-------------------------   95 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e-------------------------   95 (257)
                      .++|++.+.||+|+||+||+|+.    .+++.||||++.+....... ...+.+|                         
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRD-RVRTKMERDILVEVNHPFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEE-CC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHH-HHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence            36899999999999999999964    25789999999654321110 1122223                         


Q ss_pred             --------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           96 --------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        96 --------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                +..+..|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+....
T Consensus       102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID  178 (304)
T ss_dssp             EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence                                      334667999999999999   999999999999999999999999999986533


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus       179 ~~~~-------------~~~~~GT~~YmA--------------PE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          179 HEKK-------------AYSFCGTVEYMA--------------PEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             --CC-------------CCSCCCCGGGCC--------------HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc-------------ccccccCcccCC--------------HHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence            2211             123579999999              66667777899999999999999999999999864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=6e-35  Score=250.54  Aligned_cols=154  Identities=24%  Similarity=0.389  Sum_probs=122.3

Q ss_pred             ccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~------------------  100 (257)
                      .+++++.+.||+|+||+||+|.+      .+++.||||+++.....  ...+.|.+|+.+++                  
T Consensus        25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~--~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~  102 (308)
T 4gt4_A           25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEG--PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ  102 (308)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccCh--HHHHHHHHHHHHHHhCCCCCCCCcceEEEECC
Confidence            45678899999999999999975      24678999999754322  22456777776633                  


Q ss_pred             -------------------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc
Q 039073          101 -------------------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLD  131 (257)
Q Consensus       101 -------------------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~  131 (257)
                                                                       .||+.|++|||++   +|+||||||+|||++
T Consensus       103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~  179 (308)
T 4gt4_A          103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVY  179 (308)
T ss_dssp             SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEEC
Confidence                                                             3899999999999   999999999999999


Q ss_pred             CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHH
Q 039073          132 SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFG  211 (257)
Q Consensus       132 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  211 (257)
                      .++.+||+|||+++.........           ......||+.|+|              ||.+.+..++.++||||||
T Consensus       180 ~~~~~Ki~DFGlar~~~~~~~~~-----------~~~~~~gt~~ymA--------------PE~l~~~~~s~ksDVwSfG  234 (308)
T 4gt4_A          180 DKLNVKISDLGLFREVYAADYYK-----------LLGNSLLPIRWMA--------------PEAIMYGKFSIDSDIWSYG  234 (308)
T ss_dssp             GGGCEEECCSCCBCGGGGGGCBC-----------SSSSSCBCGGGCC--------------HHHHHHCCCCHHHHHHHHH
T ss_pred             CCCCEEECCcccceeccCCCcee-----------EecccccCCcccC--------------HHHHhCCCCCccchhhhHH
Confidence            99999999999998654322111           1123578999999              6667777789999999999


Q ss_pred             HHHHHHHh-CCCCCcccc
Q 039073          212 VVALKVLM-GTHPGELLS  228 (257)
Q Consensus       212 ~~l~ell~-G~~Pf~~~~  228 (257)
                      |++|||+| |+.||.+.+
T Consensus       235 vvl~El~t~g~~Pf~~~~  252 (308)
T 4gt4_A          235 VVLWEVFSYGLQPYCGYS  252 (308)
T ss_dssp             HHHHHHHTTTCCTTTTCC
T ss_pred             HHHHHHHhCCCCCCCCCC
Confidence            99999998 999998754

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-34  Score=246.60  Aligned_cols=146  Identities=26%  Similarity=0.416  Sum_probs=118.5

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH--------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS--------------------------  100 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~--------------------------  100 (257)
                      |++.+.||+|+||+||+|.+ .+++.||+|++....... ...+.+.+|+.+++                          
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK-SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            47788999999999999965 579999999997654333 33567888887743                          


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcC-CCCeEEeeccCccccc
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLS--IVHRDISSNNILLDS-NLEAFVADFGTARLLH  148 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~  148 (257)
                                                   .||+.||+|||++   +  |+||||||+|||++. ++.+||+|||+|+...
T Consensus       107 vmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~  183 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence                                         3899999999998   7  999999999999985 7899999999997542


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...               ....+||+.|+||              |++.+ .|+.++|||||||++|||++|+.||.+.
T Consensus       184 ~~~---------------~~~~~GTp~YmAP--------------E~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~  232 (290)
T 3fpq_A          184 ASF---------------AKAVIGTPEFMAP--------------EMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             TTS---------------BEESCSSCCCCCG--------------GGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CCc---------------cCCcccCccccCH--------------HHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            211               1335799999995              54433 4799999999999999999999999754

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=256.04  Aligned_cols=158  Identities=26%  Similarity=0.362  Sum_probs=123.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||+++..... ....+.+.+|+.++.                       
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence            46899999999999999999965 57999999999765432 233556777877744                       


Q ss_pred             ---------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          101 ---------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       101 ---------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                       .||+.||.|||++   +|+||||||+||+++.++.+||+|||+++..
T Consensus       132 ~~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~  208 (398)
T 4b99_A          132 KSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGL  208 (398)
T ss_dssp             CCEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred             CEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeec
Confidence                                             3899999999999   9999999999999999999999999999865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ........         ......+||+.|+|||++.+..             .++.++||||+||++|||++|++||.+.
T Consensus       209 ~~~~~~~~---------~~~~~~~GT~~Y~APEv~~~~~-------------~~~~~~DiWSlG~il~ell~G~~pF~g~  266 (398)
T 4b99_A          209 CTSPAEHQ---------YFMTEYVATRWYRAPELMLSLH-------------EYTQAIDLWSVGCIFGEMLARRQLFPGK  266 (398)
T ss_dssp             -------C---------CCCCSSCCCCTTCCHHHHTTCS-------------CCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             ccCccccc---------cccccceeChHhcCHHHhcCCC-------------CCCChhheehhHHHHHHHHHCCCCCCCC
Confidence            43221110         0123467999999955543322             2588999999999999999999999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       267 ~  267 (398)
T 4b99_A          267 N  267 (398)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5e-35  Score=250.03  Aligned_cols=153  Identities=29%  Similarity=0.436  Sum_probs=122.0

Q ss_pred             ccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      .++|.+.+.||+|+||+||+|++.      +++.||||+++...   ....+.|.+|+++                    
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~   88 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   88 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC---hHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            467999999999999999999653      47789999997542   3335677888776                    


Q ss_pred             --------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           99 --------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        99 --------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                  ++.||+.|+.|||++   +|+||||||+|||++.++
T Consensus        89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~  165 (299)
T 4asz_A           89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENL  165 (299)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCC
Confidence                                                        234899999999999   999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .+||+|||+++.........           ......||+.|+|              ||.+.+..|+.++|||||||++
T Consensus       166 ~~Ki~DFGla~~~~~~~~~~-----------~~~~~~gt~~ymA--------------PE~~~~~~~~~k~DVwS~Gvvl  220 (299)
T 4asz_A          166 LVKIGDFGMSRDVYSTDYYR-----------VGGHTMLPIRWMP--------------PESIMYRKFTTESDVWSLGVVL  220 (299)
T ss_dssp             CEEECCCSCHHHHTGGGCEE-----------ETTTEEECGGGCC--------------HHHHHHCCCCHHHHHHHHHHHH
T ss_pred             cEEECCcccceecCCCCcee-----------ecCceecChhhcC--------------HHHHcCCCCCchhhHHHHHHHH
Confidence            99999999998654322110           0123468999999              6677777789999999999999


Q ss_pred             HHHHh-CCCCCcccc
Q 039073          215 LKVLM-GTHPGELLS  228 (257)
Q Consensus       215 ~ell~-G~~Pf~~~~  228 (257)
                      |||+| |+.||.+.+
T Consensus       221 ~Ellt~G~~Pf~~~~  235 (299)
T 4asz_A          221 WEIFTYGKQPWYQLS  235 (299)
T ss_dssp             HHHHTTTCCTTTTSC
T ss_pred             HHHHcCCCCCCCCCC
Confidence            99998 999998754

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=9e-35  Score=253.74  Aligned_cols=162  Identities=25%  Similarity=0.374  Sum_probs=130.0

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHHH----------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHVL----------   99 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l----------   99 (257)
                      ++.+.|..+.++|++.+.||+|+||+||+|.+.      +++.||||++......  ...+.+.+|+.++          
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~--~~~~~~~~E~~il~~l~hhpnIV  131 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVV  131 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccCh--HHHHHHHHHHHHHHHcCCCCcEE
Confidence            345678888999999999999999999999642      2468999999764332  2245666776652          


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHhhCCCCCeEe
Q 039073          100 -----------------------------------------------------------STSVAHALSYLHHDCTLSIVH  120 (257)
Q Consensus       100 -----------------------------------------------------------~~~i~~~l~~LH~~~~~~i~H  120 (257)
                                                                                 +.||+.|+.|||++   +|+|
T Consensus       132 ~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiH  208 (353)
T 4ase_A          132 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH  208 (353)
T ss_dssp             CEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred             EEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Ceec
Confidence                                                                       23799999999999   9999


Q ss_pred             eCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC
Q 039073          121 RDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV  200 (257)
Q Consensus       121 ~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~  200 (257)
                      |||||+||+++.++.+||+|||+|+.........           ......||+.|+|              ||++.+..
T Consensus       209 RDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~-----------~~~~~~gt~~ymA--------------PE~l~~~~  263 (353)
T 4ase_A          209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYV-----------RKGDARLPLKWMA--------------PETIFDRV  263 (353)
T ss_dssp             SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSE-----------EETTEEECGGGCC--------------HHHHHHCC
T ss_pred             CccCccceeeCCCCCEEECcchhhhhcccCCCce-----------eeccccccccccC--------------HHHHhcCC
Confidence            9999999999999999999999998654322110           1123578999999              66777777


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          201 VTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       201 ~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      |+.++|||||||++|||+| |+.||.+.
T Consensus       264 y~~ksDVwS~Gv~l~El~t~G~~Pf~~~  291 (353)
T 4ase_A          264 YTIQSDVWSFGVLLWEIFSLGASPYPGV  291 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             CCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence            8999999999999999998 99999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.5e-34  Score=250.22  Aligned_cols=160  Identities=25%  Similarity=0.331  Sum_probs=120.3

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHH--------------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFV--------------------------------   89 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~--------------------------------   89 (257)
                      ...++|++.+.||+|+||+||+|.+ .+|+.||||+++.......+..                                
T Consensus        55 ~~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g  134 (336)
T 4g3f_A           55 EEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG  134 (336)
T ss_dssp             BTTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             cchhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCC
Confidence            3457799999999999999999965 5799999999975433211100                                


Q ss_pred             ---HHH--------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccCCCCCCcc
Q 039073           90 ---KSF--------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDSSNRPYE  157 (257)
Q Consensus        90 ---~~~--------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~~~~~~~~  157 (257)
                         ..+        ..++..+..||+.||+|||++   +|+||||||+|||++.++ .+||+|||+++........... 
T Consensus       135 g~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~-  210 (336)
T 4g3f_A          135 GSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL-  210 (336)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccce-
Confidence               000        013344667999999999999   999999999999999988 5999999999876543221110 


Q ss_pred             ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          158 WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       158 ~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                             ......+||+.|+|              ||++.+..|+.++||||+||++|||++|++||.+.
T Consensus       211 -------~~~~~~~GT~~YmA--------------PE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  259 (336)
T 4g3f_A          211 -------LTGDYIPGTETHMA--------------PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQY  259 (336)
T ss_dssp             ----------CCCCCCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             -------ecCCccccCccccC--------------HHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence                   01123579999999              66677777899999999999999999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=249.31  Aligned_cols=153  Identities=31%  Similarity=0.466  Sum_probs=117.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------   99 (257)
                      .++|.+.++||+|+||+||+|++.      +++.||||+++...   ....+.|.+|++++                   
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~  116 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---ESARQDFQREAELLTMLQHQHIVRFFGVCTEGR  116 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            467889999999999999999753      47889999997542   33456788887762                   


Q ss_pred             -----------------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073          100 -----------------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus       100 -----------------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                     +.||+.|+.|||++   +|+||||||+|||++.
T Consensus       117 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~  193 (329)
T 4aoj_A          117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQ  193 (329)
T ss_dssp             SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEET
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECC
Confidence                                                           33899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.+||+|||+++..........           .....||+.|+|              ||++.+..++.++|||||||
T Consensus       194 ~~~~Ki~DFGla~~~~~~~~~~~-----------~~~~~gt~~ymA--------------PE~~~~~~~~~~sDvwS~Gv  248 (329)
T 4aoj_A          194 GLVVKIGDFGMSRDIYSTDYYRV-----------GGRTMLPIRWMP--------------PESILYRKFTTESDVWSFGV  248 (329)
T ss_dssp             TTEEEECCCC---------------------------CCCCGGGCC--------------HHHHTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEcccccceeccCCCccee-----------cCcccccccccC--------------hhhhcCCCCCccccccchHH
Confidence            99999999999986543221110           123568999999              67777777899999999999


Q ss_pred             HHHHHHh-CCCCCcccc
Q 039073          213 VALKVLM-GTHPGELLS  228 (257)
Q Consensus       213 ~l~ell~-G~~Pf~~~~  228 (257)
                      ++|||+| |+.||.+.+
T Consensus       249 vl~Ellt~G~~Pf~~~~  265 (329)
T 4aoj_A          249 VLWEIFTYGKQPWYQLS  265 (329)
T ss_dssp             HHHHHHTTSCCTTCSSC
T ss_pred             HHHHHHcCCCCCCCCCC
Confidence            9999999 999998653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=8.8e-34  Score=242.45  Aligned_cols=159  Identities=22%  Similarity=0.393  Sum_probs=111.7

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||+++...  .....+.+.+|+.+                         
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~   81 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKL   81 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-----
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccc
Confidence            35799999999999999999965 579999999997543  22234556667665                         


Q ss_pred             -----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           99 -----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        99 -----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                               +..|++.||+|||++   +|+||||||+||+++.++.+|
T Consensus        82 ~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vK  158 (299)
T 4g31_A           82 QPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVK  158 (299)
T ss_dssp             -----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred             cccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEE
Confidence                                                     233899999999999   999999999999999999999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      |+|||+++.............. ..........+||+.|+|              ||++.+..|+.++||||+||++|||
T Consensus       159 l~DFGla~~~~~~~~~~~~~~~-~~~~~~~~~~~GT~~YmA--------------PE~~~~~~y~~~~DiwSlGvilyel  223 (299)
T 4g31_A          159 VGDFGLVTAMDQDEEEQTVLTP-MPAYARHTGQVGTKLYMS--------------PEQIHGNSYSHKVDIFSLGLILFEL  223 (299)
T ss_dssp             ECCCCCC---------------------------CCCTTSC--------------HHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             EccCccceecCCCccccccccc-cccccccCCcccCccccC--------------HHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            9999999876543322111000 001111234579999999              6666677789999999999999999


Q ss_pred             HhCCCCCcc
Q 039073          218 LMGTHPGEL  226 (257)
Q Consensus       218 l~G~~Pf~~  226 (257)
                      ++   ||..
T Consensus       224 l~---Pf~~  229 (299)
T 4g31_A          224 LY---PFST  229 (299)
T ss_dssp             HS---CCSS
T ss_pred             cc---CCCC
Confidence            96   7764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.3e-33  Score=262.10  Aligned_cols=151  Identities=26%  Similarity=0.381  Sum_probs=119.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH---HH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE---AH-----------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e---~~-----------------------   97 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.+..............|   +.                       
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            57899999999999999999965 4799999999975422111111122222   22                       


Q ss_pred             ----------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           98 ----------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        98 ----------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                  .++.||+.||+|||++   +|+||||||+|||++.+|++||+|||+|.....
T Consensus       268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~  344 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK  344 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence                                        2455899999999999   999999999999999999999999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..               ....+||+.|+|              ||++. +..|+.++|+||+||++|||++|++||.+.
T Consensus       345 ~~---------------~~t~~GTp~YmA--------------PEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~  394 (689)
T 3v5w_A          345 KK---------------PHASVGTHGYMA--------------PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  394 (689)
T ss_dssp             CC---------------CCSCCSCGGGCC--------------HHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGG
T ss_pred             CC---------------CCCccCCcCccC--------------HHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            22               123579999999              55554 345799999999999999999999999764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=6e-33  Score=237.87  Aligned_cols=160  Identities=25%  Similarity=0.334  Sum_probs=115.0

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      .+|.+.+.||+|+||+||+|.+ +|+.||||++......    ...+..|+..                           
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~----~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~   77 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER----SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh----hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence            5688999999999999999987 5889999999654211    1111223222                           


Q ss_pred             ---------------------------HHHHHHHHHHHHhhC-----CCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHD-----CTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~-----~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                 ++.|++.||+|||++     ..++|+||||||+|||++.++.+||+|||+++.
T Consensus        78 lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~  157 (303)
T 3hmm_A           78 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence                                       445899999999975     234899999999999999999999999999987


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .........         .......||+.|+|||++.......        ...++.++|||||||++|||++|.+||..
T Consensus       158 ~~~~~~~~~---------~~~~~~~GT~~ymAPE~l~~~~~~~--------~~~~~~k~DVwS~Gvvl~El~tg~~~~~~  220 (303)
T 3hmm_A          158 HDSATDTID---------IAPNHRVGTKRYMAPEVLDDSINMK--------HFESFKRADIYAMGLVFWEIARRCSIGGI  220 (303)
T ss_dssp             EETTTTEES---------CC-----CCGGGCCHHHHTTCSCTT--------CHHHHHHHHHHHHHHHHHHHHHTBCBTTB
T ss_pred             ccCCCCcee---------eecccccccccccCHHHhccccccc--------CCccChhHhhhhHHHHHHHHHHCCCCCCc
Confidence            654322110         0012357999999977664332110        11246799999999999999999888764


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       221 ~  221 (303)
T 3hmm_A          221 H  221 (303)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.3e-32  Score=241.17  Aligned_cols=162  Identities=26%  Similarity=0.262  Sum_probs=116.8

Q ss_pred             hhccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ...++|++.+.||+|+||+||+|..    .+++.||||++......     ..+.+|+++                    
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~-----~~~~~E~~~l~~~~~h~nIv~l~~~~~~~   92 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHP-----IRIAAELQCLTVAGGQDNVMGVKYCFRKN   92 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCH-----HHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCH-----HHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence            3467899999999999999999954    25778999998754321     234445444                    


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccCccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLH  148 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~~~~~~  148 (257)
                                                   +..|++.||+|||++   ||+||||||+|||++.+ +.++|+|||+|+...
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             CEEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence                                         444999999999999   99999999999999877 789999999998654


Q ss_pred             cCCCCCCcc------------c---cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHH
Q 039073          149 VDSSNRPYE------------W---ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGV  212 (257)
Q Consensus       149 ~~~~~~~~~------------~---~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~  212 (257)
                      .........            .   ............+||+.|+|||+              +.+. .++.++||||+||
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~--------------l~~~~~y~~~~DiWSlG~  235 (361)
T 4f9c_A          170 DTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEV--------------LTKCPNQTTAIDMWSAGV  235 (361)
T ss_dssp             TCSCGGGGGC--------------------------CCCCGGGCCHHH--------------HTTCSCCCTHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccCccccCHHH--------------HcCCCCCCCccchhhhHH
Confidence            322110000            0   00000111234579999999554              4443 2688999999999


Q ss_pred             HHHHHHhCCCCCcc
Q 039073          213 VALKVLMGTHPGEL  226 (257)
Q Consensus       213 ~l~ell~G~~Pf~~  226 (257)
                      ++|||++|+.||..
T Consensus       236 il~ell~G~~Pf~~  249 (361)
T 4f9c_A          236 IFLSLLSGRYPFYK  249 (361)
T ss_dssp             HHHHHHHTCSSSSC
T ss_pred             HHHHHHHCCCCCCC
Confidence            99999999999964

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.97  E-value=3e-31  Score=245.32  Aligned_cols=150  Identities=25%  Similarity=0.341  Sum_probs=123.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++......   ..+.+.+|+.++                        
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~---~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES---DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchh---hHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            47899999999999999999965 57999999998754322   234566666653                        


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC--CCeEEeeccCcccccc
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSN--LEAFVADFGTARLLHV  149 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~--~~~~l~dfg~~~~~~~  149 (257)
                                                  ..||+.||.|||++   +|+||||||+||+++.+  +.+||+|||+++....
T Consensus       233 ~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~  309 (573)
T 3uto_A          233 YEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  309 (573)
T ss_dssp             EECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred             EeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence                                        34899999999999   99999999999999854  7899999999987643


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...              ....+||+.|+|              ||++.+..|+.++||||+||++|||++|++||.+.+
T Consensus       310 ~~~--------------~~~~~GT~~y~A--------------PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~  360 (573)
T 3uto_A          310 KQS--------------VKVTTGTAEFAA--------------PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN  360 (573)
T ss_dssp             TSE--------------EEEECSSGGGCC--------------HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             CCc--------------eeeeEECccccC--------------HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            221              233579999999              666777778999999999999999999999998643

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.97  E-value=3.4e-30  Score=228.42  Aligned_cols=155  Identities=25%  Similarity=0.408  Sum_probs=122.1

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||+||+|... +++.||+|++++.........+.+..|..+                       
T Consensus        49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL  128 (396)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEE
Confidence            34678999999999999999999664 688999999976543333223334444433                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.||.|||++   +|+||||||+||+++.++.++|+|||+++....
T Consensus       129 ~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence                                         344899999999999   999999999999999999999999999875322


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||++.+..++.++|+||+||++|||++|+.||...
T Consensus       206 ~~~~-------------~~~~~gt~~Y~a--------------PE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~  256 (396)
T 4dc2_A          206 PGDT-------------TSTFCGTPNYIA--------------PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  256 (396)
T ss_dssp             TTCC-------------BCCCCBCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             CCCc-------------cccccCCcccCC--------------chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence            2111             123579999999              66666667899999999999999999999999754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=227.07  Aligned_cols=155  Identities=25%  Similarity=0.396  Sum_probs=117.6

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||+||+|... +|+.||||++++.........+.+..|..+                       
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            34688999999999999999999654 689999999975432222223334444443                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.||.|||++   +|+||||||+||+++.++.++|+|||+++....
T Consensus       100 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~  176 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC  176 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence                                         344899999999999   999999999999999999999999999875332


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       177 ~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  227 (353)
T 3txo_A          177 NGVT-------------TATFCGTPDYIA--------------PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE  227 (353)
T ss_dssp             ----------------------CCGGGCC--------------HHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc-------------ccccCCCcCeEC--------------hhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence            2111             123579999999              55555556789999999999999999999999764

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=1.5e-29  Score=220.37  Aligned_cols=153  Identities=25%  Similarity=0.425  Sum_probs=125.0

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|... +++.||+|++.+.........+.+..|..++                        
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            578999999999999999999764 6889999999876555544455566666553                        


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                  +.|++.||.|||++   +++||||||+||+++.++.++|+|||+++......
T Consensus        88 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~  164 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  164 (345)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence                                        33899999999999   99999999999999999999999999987532221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             ....+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||...
T Consensus       165 ~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  213 (345)
T 3a8x_A          165 DT-------------TSTFCGTPNYIA--------------PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  213 (345)
T ss_dssp             CC-------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred             Cc-------------ccccCCCccccC--------------ccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence            11             123578999999              56666666789999999999999999999999754

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.96  E-value=5.1e-30  Score=222.79  Aligned_cols=154  Identities=25%  Similarity=0.347  Sum_probs=121.6

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|... +|+.||+|++++...........+..|..+                        
T Consensus         3 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~l   82 (337)
T 1o6l_A            3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF   82 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEE
Confidence            3578999999999999999999664 799999999975321111112344444444                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.||.|||++   +++||||||+||+++.++.++|+|||+++......
T Consensus        83 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  159 (337)
T 1o6l_A           83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence                                       445899999999999   99999999999999999999999999987543221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             ....+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       160 ~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          160 AT-------------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CC-------------BCCCEECGGGCC--------------GGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Cc-------------ccccccChhhCC--------------hhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence            11             123578999999              66666667899999999999999999999999753

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.96  E-value=1.5e-30  Score=233.51  Aligned_cols=168  Identities=28%  Similarity=0.355  Sum_probs=124.6

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      ..+.++....++|++.+.||+|+||+||+|... +++.||+|++.+...........+..|..+                
T Consensus        64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            345566677899999999999999999999765 588999999864221111001112333332                


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          +..|++.||.|||++   +|+||||||+||+++.++.++|+|||
T Consensus       144 ~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFG  220 (437)
T 4aw2_A          144 QDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFG  220 (437)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             eeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchh
Confidence                                                455899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++..........            ....+||+.|+|||++....         .....++.++|+||+||++|||++|+.
T Consensus       221 la~~~~~~~~~~------------~~~~~GT~~Y~APE~l~~~~---------~~~~~~~~~~DvwSlGvil~elltG~~  279 (437)
T 4aw2_A          221 SCLKLMEDGTVQ------------SSVAVGTPDYISPEILQAME---------GGKGRYGPECDWWSLGVCMYEMLYGET  279 (437)
T ss_dssp             TCEECCTTSCEE------------CCSCCSCGGGCCHHHHHHHH---------TSCCEECTHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhhcccCCCcc------------cccccCCcCeeChHHHhhcc---------cCCCCCCCcCeeHHHHHHHHHHHhCCC
Confidence            997653322110            12257999999966653210         002346889999999999999999999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||.+.
T Consensus       280 Pf~~~  284 (437)
T 4aw2_A          280 PFYAE  284 (437)
T ss_dssp             TTCCS
T ss_pred             CCCCC
Confidence            99864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.96  E-value=1.3e-30  Score=232.00  Aligned_cols=165  Identities=25%  Similarity=0.359  Sum_probs=122.0

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      +.++....++|++.+.||+|+||+||+|... +++.||+|++.+.........+.+..|..+                  
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3455566889999999999999999999664 689999999864211100001122233332                  


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      ++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++..
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~  217 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMK  217 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence                                            455899999999999   999999999999999999999999999976


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......            .....+||+.|+|||++.....          ...++.++|+|||||++|||++|+.||.+
T Consensus       218 ~~~~~~~------------~~~~~~gt~~Y~APE~l~~~~~----------~~~~~~~~DiwSlGvilyell~G~~Pf~~  275 (410)
T 3v8s_A          218 MNKEGMV------------RCDTAVGTPDYISPEVLKSQGG----------DGYYGRECDWWSVGVFLYEMLVGDTPFYA  275 (410)
T ss_dssp             CCTTSEE------------ECCSCCSCGGGCCHHHHHTTTT----------TCEEETHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             eccCCcc------------cccCCcCCccccCHHHhhccCC----------CcCCCCcceEecchHHHHHHHhCCCCCCC
Confidence            5432110            0123579999999655432210          01157899999999999999999999985


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       276 ~  276 (410)
T 3v8s_A          276 D  276 (410)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.96  E-value=9.1e-30  Score=221.87  Aligned_cols=157  Identities=27%  Similarity=0.416  Sum_probs=120.3

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .....++|++.+.||+|+||+||+|... +|+.||||+++...............|..+                     
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~   91 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE   91 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC
Confidence            3456789999999999999999999764 689999999975421111112233333333                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.|++.||.|||++   +++||||||+||+++.++.++|+|||+++..
T Consensus        92 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  168 (345)
T 1xjd_A           92 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKEN  168 (345)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence                                           445899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......             ....+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       169 ~~~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          169 MLGDAK-------------TNTFCGTPDYIA--------------PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             CCTTCC-------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCCc-------------ccCCCCCcccCC--------------hhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence            322111             123578999999              56666666789999999999999999999999754

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.2e-30  Score=228.92  Aligned_cols=170  Identities=25%  Similarity=0.355  Sum_probs=126.5

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      +.+.++....++|++.+.||+|+||+||+|.. .+|+.||||++.+.........+.+..|..+                
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            44566667789999999999999999999976 4799999999965321111111223333333                


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          +..|++.||.|||++   +++||||||+||+++.+++++|+|||
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFG  207 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFG  207 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeech
Confidence                                                445899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++..........            ....+||+.|+|||++.....       ......++.++|+||+||++|||++|+.
T Consensus       208 la~~~~~~~~~~------------~~~~~Gt~~Y~APE~l~~~~~-------~~~~~~~~~~~DiwSlGvilyelltG~~  268 (412)
T 2vd5_A          208 SCLKLRADGTVR------------SLVAVGTPDYLSPEILQAVGG-------GPGTGSYGPECDWWALGVFAYEMFYGQT  268 (412)
T ss_dssp             TCEECCTTSCEE------------CSSCCSCGGGCCHHHHHHHHT-------CTTCSEECTHHHHHHHHHHHHHHHHSSC
T ss_pred             hheeccCCCccc------------cceeccccCcCCHHHHhhccc-------CcCCCCCChHHhhhHHhHHHHHHHhCCC
Confidence            998654322110            122579999999766543210       0012346889999999999999999999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||.+.
T Consensus       269 Pf~~~  273 (412)
T 2vd5_A          269 PFYAD  273 (412)
T ss_dssp             TTCCS
T ss_pred             CCCCC
Confidence            99764

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.96  E-value=1.7e-29  Score=217.70  Aligned_cols=151  Identities=29%  Similarity=0.417  Sum_probs=120.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|... +|+.||+|++.+.........+.+..|..+                        
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l   83 (318)
T 1fot_A            4 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   83 (318)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             ChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEE
Confidence            3578999999999999999999664 799999999975422111112334444433                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.......
T Consensus        84 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~  160 (318)
T 1fot_A           84 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT  160 (318)
T ss_dssp             EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB
T ss_pred             EEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCcc
Confidence                                       445899999999999   99999999999999999999999999987643211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                      ...+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       161 ----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          161 ----------------YTLCGTPDYIA--------------PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             ----------------CCCCSCTTTCC--------------HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ----------------ccccCCccccC--------------HhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence                            22468999999              56666666789999999999999999999999754

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.96  E-value=2.5e-29  Score=221.23  Aligned_cols=155  Identities=28%  Similarity=0.376  Sum_probs=119.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHH--------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNE--------------------------   95 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e--------------------------   95 (257)
                      ...++|++.+.||+|+||+||+|... +++.||||++.+...........+..|                          
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~  114 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKL  114 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEE
Confidence            34678999999999999999999664 688999999975433222212222222                          


Q ss_pred             --------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           96 --------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        96 --------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                +..++.|++.||+|||++   +++||||||+||+++.++.++|+|||+++....
T Consensus       115 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          115 YFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence                                      223566999999999999   999999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||++.+..++.++|+|||||++|||++|+.||.+.
T Consensus       192 ~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  242 (373)
T 2r5t_A          192 HNST-------------TSTFCGTPEYLA--------------PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  242 (373)
T ss_dssp             CCCC-------------CCSBSCCCCCCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCCc-------------cccccCCccccC--------------HHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            2211             123578999999              66666666899999999999999999999999753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.96  E-value=1.2e-29  Score=221.86  Aligned_cols=155  Identities=25%  Similarity=0.354  Sum_probs=120.7

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||+||+|... +++.||||++++.........+.+..|..+                       
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   96 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   96 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence            34688999999999999999999765 588999999975422111112333444433                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.....
T Consensus        97 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  173 (353)
T 2i0e_A           97 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  173 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence                                         445899999999999   999999999999999999999999999875322


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       174 ~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  224 (353)
T 2i0e_A          174 DGVT-------------TKTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  224 (353)
T ss_dssp             TTCC-------------BCCCCSCGGGCC--------------HHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc-------------cccccCCccccC--------------hhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence            1111             123578999999              56666666789999999999999999999999854

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.96  E-value=2.6e-29  Score=217.46  Aligned_cols=155  Identities=25%  Similarity=0.423  Sum_probs=124.1

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      .....++|++.+.||+|+||.||+|.+ .+|+.||||++...... ....+.+.+|+.++                    
T Consensus        10 ~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~   88 (328)
T 3fe3_A           10 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKT   88 (328)
T ss_dssp             -CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cCCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE
Confidence            344577899999999999999999966 58999999999765433 23345666777663                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     ..|++.|+.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  165 (328)
T 3fe3_A           89 LYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFT  165 (328)
T ss_dssp             EEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGS
T ss_pred             EEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecC
Confidence                                           33899999999999   99999999999999999999999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....              ....+||+.|+||              |.+.+..+ +.++||||+||++|+|++|+.||++.
T Consensus       166 ~~~~--------------~~~~~gt~~y~aP--------------E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  217 (328)
T 3fe3_A          166 VGGK--------------LDAFCGAPPYAAP--------------ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ  217 (328)
T ss_dssp             SSCG--------------GGTTSSSGGGCCH--------------HHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCc--------------cccccCCcceeCc--------------ccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence            2211              1335689999995              55554444 46899999999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.96  E-value=7.6e-29  Score=211.01  Aligned_cols=155  Identities=32%  Similarity=0.480  Sum_probs=122.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...........+.+.+|+..                         
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            57899999999999999999965 4789999999876655555556677777665                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  166 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL  166 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccccc
Confidence                                      344899999999999   999999999999999999999999999876532221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..            .....||+.|+|              ||...+..++.++|+||+|+++|+|++|+.||++..
T Consensus       167 ~~------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~  216 (294)
T 4eqm_A          167 TQ------------TNHVLGTVQYFS--------------PEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET  216 (294)
T ss_dssp             --------------------CCSSCC--------------HHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred             cc------------cCccccCccccC--------------HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            11            123468999999              556666667889999999999999999999998643

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.96  E-value=1.1e-28  Score=211.79  Aligned_cols=156  Identities=22%  Similarity=0.363  Sum_probs=120.5

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...++|++.+.||+|+||.||+|...+|+.||+|++....... ...+.+.+|+.+                        
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   96 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE-GIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTL   96 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc-hhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEE
Confidence            3468899999999999999999988889999999997543222 223455566655                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.......
T Consensus        97 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  173 (311)
T 3niz_A           97 VFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV  173 (311)
T ss_dssp             EEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence                                       344899999999999   99999999999999999999999999998654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             .....||+.|+|||++.+.             ..++.++||||+||++|+|++|+.||.+..
T Consensus       174 ~~-------------~~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~ll~g~~pf~~~~  224 (311)
T 3niz_A          174 RS-------------YTHEVVTLWYRAPDVLMGS-------------KKYSTSVDIWSIGCIFAEMITGKPLFPGVT  224 (311)
T ss_dssp             C----------------CCCCCCTTCCHHHHTTC-------------CSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cc-------------ccCCcccCCcCCHHHhcCC-------------CCCCchHHhHHHHHHHHHHHhCCCCCCCCC
Confidence            11             1224678999995544322             336889999999999999999999998643

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.96  E-value=1.7e-28  Score=209.20  Aligned_cols=151  Identities=26%  Similarity=0.435  Sum_probs=122.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++........   +.+.+|+.+                        
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~---~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   94 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK---ELIINEILVMRENKNPNIVNYLDSYLVGDELWV   94 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCH---HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHH---HHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEE
Confidence            457899999999999999999965 5799999999875443332   234444444                        


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        95 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (297)
T 3fxz_A           95 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (297)
T ss_dssp             EEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             EEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence                                      445899999999999   999999999999999999999999999876543322


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....||+.|+|              ||...+..++.++||||+||++|+|++|+.||...
T Consensus       172 ~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          172 K-------------RSTMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             C-------------BCCCCSCGGGCC--------------HHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             c-------------cCCccCCcCccC--------------hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1             123568999999              56666666789999999999999999999999754

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=221.26  Aligned_cols=155  Identities=26%  Similarity=0.443  Sum_probs=121.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...........+.+.+|+.+                         
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            57899999999999999999965 4689999999875432222223455556555                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++........
T Consensus        94 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  170 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ  170 (384)
T ss_dssp             ECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCCCc
Confidence                                      344899999999999   999999999999999999999999999986543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....+||+.|+|||++...           .+..++.++|+||+||++|+|++|+.||...
T Consensus       171 --------------~~~~~gt~~Y~aPE~~~~~-----------~~~~~~~~~DiwSlG~il~elltG~~Pf~~~  220 (384)
T 4fr4_A          171 --------------ITTMAGTKPYMAPEMFSSR-----------KGAGYSFAVDWWSLGVTAYELLRGRRPYHIR  220 (384)
T ss_dssp             --------------BCCCCSCGGGCCGGGTCCC-----------SSCCBCTTHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             --------------eeccCCCccccCCeeeccC-----------CCCCCCccceeechHHHHHHHHhCCCCCCCC
Confidence                          1235789999995554221           1234688999999999999999999999743

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.96  E-value=4.2e-29  Score=218.03  Aligned_cols=150  Identities=22%  Similarity=0.328  Sum_probs=120.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||+|++...........+.+.+|+.+                         
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            578999999999999999999664 799999999865432211123344455444                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....... 
T Consensus       120 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~-  195 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT-  195 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB-
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCCc-
Confidence                                      445899999999999   99999999999999999999999999988653211 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     ...+||+.|+|              ||.+.+..++.++|+||+||++|||++|+.||.+.
T Consensus       196 ---------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  241 (350)
T 1rdq_E          196 ---------------WTLCGTPEALA--------------PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             ---------------CCCEECGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ---------------ccccCCccccC--------------HHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence                           22568999999              55566666789999999999999999999999753

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.96  E-value=1.1e-28  Score=223.16  Aligned_cols=153  Identities=24%  Similarity=0.248  Sum_probs=120.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|.+ .+++.||||++..... .....+.+.+|+.+                        
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  138 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE  138 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGG-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcccc-ChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence            468899999999999999999965 4789999999976432 23334556666655                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.||.|||++   +|+||||||+||+++.++.++|+|||++....
T Consensus       139 ~~~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          139 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             CCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             CCeEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence                                          334899999999999   99999999999999999999999999997654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              .....||+.|+|              ||.+.+..++.++||||+||++|||++|+.||.+.+
T Consensus       216 ~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~  267 (464)
T 3ttj_A          216 TSFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD  267 (464)
T ss_dssp             -CCC--------------C----CCCTTCC--------------HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCcc--------------cCCCcccccccC--------------HHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            3211              123578999999              566666668999999999999999999999998643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.96  E-value=4.3e-29  Score=235.06  Aligned_cols=155  Identities=25%  Similarity=0.352  Sum_probs=121.1

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||+||+|.. .+++.||||++++.........+.+..|..+                       
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            3567899999999999999999965 4688999999875321111112233333332                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.||+.||.|||++   +|+||||||+||+++.++.++|+|||+++....
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~  494 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  494 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred             EEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence                                         456899999999999   999999999999999999999999999985432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             ....+||+.|+|              ||++.+..++.++|+|||||++|||++|+.||.+.
T Consensus       495 ~~~~-------------~~~~~GT~~Y~A--------------PE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~  545 (674)
T 3pfq_A          495 DGVT-------------TKTFCGTPDYIA--------------PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  545 (674)
T ss_dssp             TTCC-------------BCCCCSCSSSCC--------------HHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc-------------cccccCCCcccC--------------HhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence            2111             123579999999              66666677899999999999999999999999864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=8.7e-29  Score=216.70  Aligned_cols=155  Identities=15%  Similarity=0.201  Sum_probs=120.1

Q ss_pred             HHHHhhccccccceeeeecCceeEEEE------EeCCCCEEEEEEcCccccccHHHHHHHHHH-----------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKA------ELPDGKVVALKKLHQSETEDSAFVKSFQNE-----------------   95 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~------~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e-----------------   95 (257)
                      .++....++|.+.+.||+|+||.||+|      ...+++.||||++......      .+..|                 
T Consensus        58 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~------~~~~e~~~~~~l~~~~~~~iv~  131 (365)
T 3e7e_A           58 TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPW------EFYIGTQLMERLKPSMQHMFMK  131 (365)
T ss_dssp             CEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHH------HHHHHHHHHHHSCGGGGGGBCC
T ss_pred             eeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChh------HHHHHHHHHHHhhhhhhhhhhh
Confidence            344556788999999999999999999      3456889999999764321      11111                 


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-
Q 039073           96 ------------------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-  132 (257)
Q Consensus        96 ------------------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-  132 (257)
                                                                +..++.|++.||+|||++   +|+||||||+||+++. 
T Consensus       132 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~  208 (365)
T 3e7e_A          132 FYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNG  208 (365)
T ss_dssp             EEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGG
T ss_pred             hheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEeccc
Confidence                                                      222556899999999999   9999999999999998 


Q ss_pred             ----------CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCC
Q 039073          133 ----------NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVT  202 (257)
Q Consensus       133 ----------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~  202 (257)
                                ++.++|+|||++..........           ......||..|+|              ||.+.+..++
T Consensus       209 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~-----------~~~~~~gt~~y~a--------------PE~~~~~~~~  263 (365)
T 3e7e_A          209 FLEQDDEDDLSAGLALIDLGQSIDMKLFPKGT-----------IFTAKCETSGFQC--------------VEMLSNKPWN  263 (365)
T ss_dssp             GTCC------CTTEEECCCTTCEEGGGSCTTE-----------EECCSSCTTSCCC--------------HHHHTTCCBS
T ss_pred             ccCccccccccCCEEEeeCchhhhhhccCCCc-----------eeeeecCCCCCCC--------------hHHhcCCCCC
Confidence                      8999999999997653221111           1123568999999              6666666679


Q ss_pred             CccchhhHHHHHHHHHhCCCCCccc
Q 039073          203 EKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       203 ~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .++|||||||++|||++|+.||...
T Consensus       264 ~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          264 YQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             THHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             ccccHHHHHHHHHHHHhCCCccccC
Confidence            9999999999999999999999743

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=3.6e-29  Score=215.51  Aligned_cols=169  Identities=36%  Similarity=0.607  Sum_probs=132.1

Q ss_pred             ccCCCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------
Q 039073           30 WNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------   98 (257)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------   98 (257)
                      ......+++.++....++|++.+.||+|+||.||+|...+|+.||||++........  ...+.+|+.+           
T Consensus        14 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~e~~~l~~l~h~~iv~   91 (326)
T 3uim_A           14 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGG--ELQFQTEVEMISMAVHRNLLR   91 (326)
T ss_dssp             -CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----C--CCHHHHHHHGGGTCCCTTBCC
T ss_pred             cCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchH--HHHHHHHHHHHHhccCCCccc
Confidence            334467899999999999999999999999999999887899999999976432211  1123333332           


Q ss_pred             --------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC
Q 039073           99 --------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL  134 (257)
Q Consensus        99 --------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~  134 (257)
                                                                  ++.|++.||.|||+++..+++|+||||+||+++.++
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~  171 (326)
T 3uim_A           92 LRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF  171 (326)
T ss_dssp             CCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTC
T ss_pred             eEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCC
Confidence                                                        556899999999998777999999999999999999


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++..........            .....||+.|+|              ||...+..++.++||||+|+++
T Consensus       172 ~~kl~Dfg~~~~~~~~~~~~------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il  225 (326)
T 3uim_A          172 EAVVGDFGLAKLMDYKDTHV------------TTAVRGTIGHIA--------------PEYLSTGKSSEKTDVFGYGVML  225 (326)
T ss_dssp             CEEECCCSSCEECCSSSSCE------------ECCCCSCGGGCC--------------HHHHHHSEECHHHHHHHHHHHH
T ss_pred             CEEeccCccccccCcccccc------------cccccCCcCccC--------------HHHhccCCCCccccchhHHHHH
Confidence            99999999998654322111            122458999999              5555555568899999999999


Q ss_pred             HHHHhCCCCCcc
Q 039073          215 LKVLMGTHPGEL  226 (257)
Q Consensus       215 ~ell~G~~Pf~~  226 (257)
                      |+|++|+.||+.
T Consensus       226 ~~l~~g~~pf~~  237 (326)
T 3uim_A          226 LELITGQRAFDL  237 (326)
T ss_dssp             HHHHHCCCSBCH
T ss_pred             HHHHhCCCcccc
Confidence            999999999974

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.96  E-value=1e-28  Score=211.94  Aligned_cols=163  Identities=32%  Similarity=0.468  Sum_probs=118.9

Q ss_pred             CCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------
Q 039073           33 DGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------   99 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------   99 (257)
                      .+..+.+++....++|++.+.||+|+||.||+|.. +|+.||||++...... ....+.+.+|+.++             
T Consensus        24 ~~~~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~  101 (309)
T 3p86_A           24 QGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFH-AERVNEFLREVAIMKRLRHPNIVLFMG  101 (309)
T ss_dssp             --------CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccCCCcccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            34556666677788999999999999999999977 5788999999765433 33345666776663             


Q ss_pred             -----------------------------------------HHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcCCCCe
Q 039073          100 -----------------------------------------STSVAHALSYLHHDCTLS--IVHRDISSNNILLDSNLEA  136 (257)
Q Consensus       100 -----------------------------------------~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~~~~~  136 (257)
                                                               +.|++.||.|||++   +  ++||||||+||+++.++.+
T Consensus       102 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~  178 (309)
T 3p86_A          102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTV  178 (309)
T ss_dssp             EECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCE
T ss_pred             EEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcE
Confidence                                                     33899999999999   8  9999999999999999999


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++.........             .....||+.|+|              ||...+..++.++||||||+++|+
T Consensus       179 kL~Dfg~a~~~~~~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~e  231 (309)
T 3p86_A          179 KVCDFGLSRLKASTFLS-------------SKSAAGTPEWMA--------------PEVLRDEPSNEKSDVYSFGVILWE  231 (309)
T ss_dssp             EECCCC------------------------------CCTTSC--------------HHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             EECCCCCCccccccccc-------------cccCCCCccccC--------------hhhhcCCCCCchhhHHHHHHHHHH
Confidence            99999998754322111             123568999999              566666667899999999999999


Q ss_pred             HHhCCCCCccc
Q 039073          217 VLMGTHPGELL  227 (257)
Q Consensus       217 ll~G~~Pf~~~  227 (257)
                      |++|+.||...
T Consensus       232 lltg~~Pf~~~  242 (309)
T 3p86_A          232 LATLQQPWGNL  242 (309)
T ss_dssp             HHHCCCTTTTS
T ss_pred             HHhCCCCCCCC
Confidence            99999999864

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=1.4e-28  Score=211.57  Aligned_cols=164  Identities=35%  Similarity=0.507  Sum_probs=129.4

Q ss_pred             CCCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           33 DGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      ...+++.++...+++|++.+.||+|+||.||+|...+++.||||++......   ..+.+.+|+.+              
T Consensus        26 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~  102 (321)
T 2qkw_B           26 SYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ---GIEEFETEIETLSFCRHPHLVSLIG  102 (321)
T ss_dssp             ----CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSS---HHHHHHHHHHGGGSCCCTTBCCEEE
T ss_pred             ceeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChH---HHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            3456777788889999999999999999999999888999999998764322   23455566554              


Q ss_pred             -----------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           99 -----------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        99 -----------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                               ++.|++.|+.|||++   +++|+||||+||+++.++.++
T Consensus       103 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~k  179 (321)
T 2qkw_B          103 FCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPK  179 (321)
T ss_dssp             ECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEE
T ss_pred             EEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEE
Confidence                                                     445899999999999   999999999999999999999


Q ss_pred             EeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKV  217 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  217 (257)
                      |+|||++...........           .....||..|+|              ||...+..++.++||||||+++|+|
T Consensus       180 l~Dfg~~~~~~~~~~~~~-----------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el  234 (321)
T 2qkw_B          180 ITDFGISKKGTELDQTHL-----------STVVKGTLGYID--------------PEYFIKGRLTEKSDVYSFGVVLFEV  234 (321)
T ss_dssp             ECCCTTCEECSSSSCCCC-----------BCCCEEETTTCC--------------HHHHHHCBCCTHHHHHHHHHHHHHH
T ss_pred             Eeeccccccccccccccc-----------ccccCCCccccC--------------HHHhcCCCCCcccchHhHHHHHHHH
Confidence            999999876432221110           123458999999              5555555678999999999999999


Q ss_pred             HhCCCCCccc
Q 039073          218 LMGTHPGELL  227 (257)
Q Consensus       218 l~G~~Pf~~~  227 (257)
                      ++|+.||...
T Consensus       235 l~g~~p~~~~  244 (321)
T 2qkw_B          235 LCARSAIVQS  244 (321)
T ss_dssp             HHCCTTCSCS
T ss_pred             HhCCCccccc
Confidence            9999999754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.96  E-value=3.6e-29  Score=224.97  Aligned_cols=154  Identities=24%  Similarity=0.343  Sum_probs=116.7

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH--------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA--------------------------   96 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~--------------------------   96 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++.............+..|+                          
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            467899999999999999999965 57999999998653221111122233332                          


Q ss_pred             -------------------------HHHHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           97 -------------------------HVLSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        97 -------------------------~~l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                               ..++.|++.||.|||+ .   +|+||||||+||+++.++.++|+|||++......
T Consensus       226 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  302 (446)
T 4ejn_A          226 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD  302 (446)
T ss_dssp             EECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred             EEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence                                     2356699999999997 8   9999999999999999999999999998754322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...             ....+||+.|+|              ||.+.+..++.++|||||||++|||++|+.||.+.
T Consensus       303 ~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          303 GAT-------------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             -----------------CCSSSCGGGCC--------------HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Ccc-------------cccccCCccccC--------------HhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            111             123578999999              66666667899999999999999999999999754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=2.9e-28  Score=215.16  Aligned_cols=168  Identities=24%  Similarity=0.322  Sum_probs=114.2

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|.+ .+|+.||||++..... .....+.+.+|+.+                       
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~   84 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ-NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR   84 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C-CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence            3467899999999999999999965 5799999999865432 22234445555554                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.||.|||+.   +++||||||+||+++.++.++|+|||+++....
T Consensus        85 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  161 (388)
T 3oz6_A           85 DVYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFVN  161 (388)
T ss_dssp             CEEEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESSS
T ss_pred             EEEEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccccc
Confidence                                         334899999999999   999999999999999999999999999986543


Q ss_pred             CCCCCCccc--------cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhC
Q 039073          150 DSSNRPYEW--------ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       150 ~~~~~~~~~--------~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      .........        .............||+.|+|||+              +.+ ..++.++||||+||++|||++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~--------------~~~~~~~~~~~DiwSlG~il~ell~g  227 (388)
T 3oz6_A          162 IRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEI--------------LLGSTKYTKGIDMWSLGCILGEILCG  227 (388)
T ss_dssp             CCCCCCCGGGCCC---------------CCCGGGGCCHHH--------------HTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccccccccccccccccCCcccCCcCCHHH--------------hcCCCCCCChhhHHHHHHHHHHHHhC
Confidence            211110000        00001111234578999999554              443 3468899999999999999999


Q ss_pred             CCCCcccc
Q 039073          221 THPGELLS  228 (257)
Q Consensus       221 ~~Pf~~~~  228 (257)
                      ++||.+.+
T Consensus       228 ~~pf~~~~  235 (388)
T 3oz6_A          228 KPIFPGSS  235 (388)
T ss_dssp             SCSCCCSS
T ss_pred             CCCCCCCC
Confidence            99998654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.96  E-value=8.6e-29  Score=227.13  Aligned_cols=153  Identities=23%  Similarity=0.363  Sum_probs=122.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|... +|+.||+|++.+.........+.+..|..+                         
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            578999999999999999999764 799999999965432211113344555544                         


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.||+.||.|||++   +|+||||||+||+++.++.++|+|||++....
T Consensus       264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence                                          344899999999999   99999999999999999999999999998654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             ....+||+.|+|              ||++.+..++.++|+||+||++|||++|+.||.+.
T Consensus       341 ~~~~~-------------~~~~~GT~~Y~A--------------PE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          341 AGQTK-------------TKGYAGTPGFMA--------------PELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             TTCCC-------------BCCCCSCTTTSC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             CCCcc-------------cccccCCccccC--------------hhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence            32211             122478999999              56666666799999999999999999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=212.86  Aligned_cols=165  Identities=21%  Similarity=0.316  Sum_probs=120.0

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      ..++|++.+.||+|+||.||++...+++.||||++...... ....+.+.+|+.++                        
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccc-hHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE
Confidence            45779999999999999999998888999999998765432 33345566666553                        


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                  ..|++.||.|||++   +++||||||+||+++ ++.++|+|||++.......
T Consensus        86 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             EEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence                                        34899999999999   999999999999997 5789999999998654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...           ......||+.|+|||++.......   ........++.++|||||||++|+|++|+.||...
T Consensus       162 ~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  223 (343)
T 3dbq_A          162 TSV-----------VKDSQVGTVNYMPPEAIKDMSSSR---ENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  223 (343)
T ss_dssp             -------------------CCCCSSCCHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccc-----------cCCCCcCCcCcCCHHHHhhccccc---cccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence            110           012356899999988775532211   11112245788999999999999999999999753

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.95  E-value=1.7e-28  Score=210.34  Aligned_cols=158  Identities=30%  Similarity=0.447  Sum_probs=119.7

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.+ .+++.||||++.............+.+|+.+                        
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~   89 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   89 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence            357899999999999999999975 5789999999987655555545566665543                        


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++...
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~  166 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI  166 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence                                           455899999999999   9999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ........          ......||..|+|              ||...+..++.++||||||+++|+|++|+.||.+.
T Consensus       167 ~~~~~~~~----------~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  222 (311)
T 3ork_A          167 ADSGNSVT----------QTAAVIGTAQYLS--------------PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  222 (311)
T ss_dssp             -------------------------CCTTCC--------------HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccc----------cccccCcCcccCC--------------HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            43221110          1123568999999              55555666788999999999999999999999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       223 ~  223 (311)
T 3ork_A          223 S  223 (311)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.95  E-value=7.9e-28  Score=207.34  Aligned_cols=163  Identities=25%  Similarity=0.386  Sum_probs=127.8

Q ss_pred             CCCCcCHHHHHhhccc----------cccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--
Q 039073           32 YDGKISYEDLINATEE----------FHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--   98 (257)
Q Consensus        32 ~~~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--   98 (257)
                      ....++.+++...++.          |+..+.||+|+||.||+|... +|+.||||++.......   .+.+.+|+.+  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~---~~~~~~E~~~l~   97 (321)
T 2c30_A           21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR---RELLFNEVVIMR   97 (321)
T ss_dssp             ----CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCS---HHHHHHHHHHHT
T ss_pred             cCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhH---HHHHHHHHHHHH
Confidence            3356788888877754          888899999999999999765 79999999987544332   2344455544  


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE
Q 039073           99 ------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL  130 (257)
Q Consensus        99 ------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill  130 (257)
                                                                      +..|++.||.|||+.   +++||||||+||++
T Consensus        98 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll  174 (321)
T 2c30_A           98 DYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILL  174 (321)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred             hCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEE
Confidence                                                            445899999999999   99999999999999


Q ss_pred             cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       131 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                      +.++.++|+|||++.........             .....||+.|+|              ||...+..++.++|+|||
T Consensus       175 ~~~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Dv~sl  227 (321)
T 2c30_A          175 TLDGRVKLSDFGFCAQISKDVPK-------------RKSLVGTPYWMA--------------PEVISRSLYATEVDIWSL  227 (321)
T ss_dssp             CTTCCEEECCCTTCEECCSSSCC-------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHH
T ss_pred             CCCCcEEEeeeeeeeecccCccc-------------cccccCCccccC--------------HhhhcCCCCCchhhHHHH
Confidence            99999999999998765432211             123468999999              555555667889999999


Q ss_pred             HHHHHHHHhCCCCCccc
Q 039073          211 GVVALKVLMGTHPGELL  227 (257)
Q Consensus       211 G~~l~ell~G~~Pf~~~  227 (257)
                      |+++|+|++|+.||...
T Consensus       228 G~il~el~~g~~pf~~~  244 (321)
T 2c30_A          228 GIMVIEMVDGEPPYFSD  244 (321)
T ss_dssp             HHHHHHHHHSSCTTTTS
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            99999999999999754

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.95  E-value=3.9e-28  Score=209.76  Aligned_cols=154  Identities=25%  Similarity=0.397  Sum_probs=114.2

Q ss_pred             hccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCcccccc-HHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETED-SAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||++..    .+++.||+|+++...... ......+.+|+.+                    
T Consensus        15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   94 (327)
T 3a62_A           15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG   94 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC
Confidence            467899999999999999999976    478999999997643211 1112334444444                    


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           95 KLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             EEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence                                           344899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......             .....||+.|+|              ||.+.+..++.++|+||+|+++|+|++|+.||.+.
T Consensus       172 ~~~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  224 (327)
T 3a62_A          172 IHDGTV-------------THTFCGTIEYMA--------------PEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE  224 (327)
T ss_dssp             --------------------CTTSSCCTTSC--------------HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccCCcc-------------ccccCCCcCccC--------------HhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence            322111             123468999999              55555666789999999999999999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.95  E-value=7.7e-29  Score=215.25  Aligned_cols=153  Identities=27%  Similarity=0.406  Sum_probs=119.3

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|.+.+.||+|+||+||+|.+ .+++.||+|++.............+.+|+.+                        
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            357899999999999999999965 5799999999864322111112234444443                        


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        87 v~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~  163 (336)
T 3h4j_B           87 VIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF  163 (336)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT
T ss_pred             EEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc
Confidence                                      455899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....+||+.|+||              |.+.+..+ +.++||||+||++|+|++|+.||++.
T Consensus       164 --------------~~~~~gt~~y~aP--------------E~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          164 --------------LKTSCGSPNYAAP--------------EVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             --------------TCCCTTSTTTSCG--------------GGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             --------------cccccCCcCcCCH--------------HHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence                          1234689999995              44444443 67899999999999999999999864

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.95  E-value=4.9e-28  Score=214.17  Aligned_cols=164  Identities=21%  Similarity=0.317  Sum_probs=119.4

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .++|++.+.||+|+||.||+|...+++.||||++..... .....+.+.+|+.+                          
T Consensus        55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            456999999999999999999887899999999976433 23334556666655                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..||+.||.|||++   +|+||||||+||+++ ++.++|+|||++........
T Consensus       134 v~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          134 VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             EEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence                                      334899999999999   999999999999995 58899999999986543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..           ......||+.|+|||++.......   ........++.++|||||||++|||++|+.||...
T Consensus       210 ~~-----------~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  270 (390)
T 2zmd_A          210 SV-----------VKDSQVGAVNYMPPEAIKDMSSSR---ENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  270 (390)
T ss_dssp             ---------------CCSCCCGGGCCHHHHHCC---------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cc-----------cCCCCCcCCCccChHHhhhccccc---cccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence            10           012356899999977765432110   00111234788999999999999999999999753

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.95  E-value=1.5e-28  Score=208.26  Aligned_cols=153  Identities=26%  Similarity=0.389  Sum_probs=116.8

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      ++|++.+.||+|+||.||+|...+|+.||+|++....... ...+.+.+|+.+                           
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE-GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG-CCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEecccccc-ccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence            6899999999999999999988889999999986543221 111233444443                           


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..|++.||.|||++   +++||||||+||+++.++.++|+|||++......... 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-  156 (288)
T 1ob3_A           81 HLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-  156 (288)
T ss_dssp             CCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             ecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccccc-
Confidence                                    455899999999999   9999999999999999999999999998765322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                  .....||+.|+|||++...             ..++.++|+||+||++|+|++|+.||.+.+
T Consensus       157 ------------~~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (288)
T 1ob3_A          157 ------------YTHEIVTLWYRAPDVLMGS-------------KKYSTTIDIWSVGCIFAEMVNGTPLFPGVS  205 (288)
T ss_dssp             -----------------CCCTTCCHHHHTTC-------------CSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ------------cccccccccccCchheeCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                        1224678999995554322             236889999999999999999999998643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.95  E-value=5.8e-28  Score=210.77  Aligned_cols=157  Identities=25%  Similarity=0.332  Sum_probs=123.7

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH---------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH---------------   97 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~---------------   97 (257)
                      ..+++.+.....++|++.+.||+|+||.||+|.. .+++.||||++......    ...+..|..               
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~e~~~l~~l~~~~~~h~~i   98 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKY----TRSAKIEADILKKIQNDDINNNNI   98 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHH----HHHHHHHHHHHHHTCCCSTTGGGB
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhh----hhhhHHHHHHHHHhcccCCCCCCe
Confidence            3455666666788999999999999999999966 57899999999743211    122222322               


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---
Q 039073           98 ------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---  132 (257)
Q Consensus        98 ------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---  132 (257)
                                                                .+..|++.||.|||++   +++||||||+||+++.   
T Consensus        99 v~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~  175 (360)
T 3llt_A           99 VKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYF  175 (360)
T ss_dssp             CCEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTC
T ss_pred             ecccceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccc
Confidence                                                      2455899999999999   9999999999999975   


Q ss_pred             ----------------------CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCc
Q 039073          133 ----------------------NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMP  190 (257)
Q Consensus       133 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~  190 (257)
                                            ++.++|+|||++.......                ....||+.|+|            
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----------------~~~~gt~~y~a------------  227 (360)
T 3llt_A          176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH----------------GSIINTRQYRA------------  227 (360)
T ss_dssp             CEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC----------------CSCCSCGGGCC------------
T ss_pred             cccccchhcccccccccccccCCCCEEEEeccCceecCCCC----------------cCccCcccccC------------
Confidence                                  7889999999987543211                12468999999            


Q ss_pred             hhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          191 FHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       191 ~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                        ||...+..++.++||||+||++|+|++|+.||...
T Consensus       228 --PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          228 --PEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             --HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --cHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence              56666666899999999999999999999999754

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.95  E-value=9.2e-28  Score=203.72  Aligned_cols=149  Identities=22%  Similarity=0.357  Sum_probs=117.7

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||.||+|.. .+++.||+|++....... .....+.+|+.+                          
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   80 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE-GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST-THHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC-CcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence            6899999999999999999966 478999999997654332 223445555554                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++.........
T Consensus        81 e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  157 (292)
T 3o0g_A           81 EFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             ECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSC
T ss_pred             ecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCcccc
Confidence                                     445899999999999   9999999999999999999999999999865432211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHhCCCCCc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                                   .....||..|+|||              ...+.. ++.++||||+||++|+|++|..||.
T Consensus       158 -------------~~~~~~t~~y~aPE--------------~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~  203 (292)
T 3o0g_A          158 -------------YSAEVVTLWYRPPD--------------VLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_dssp             -------------CCSCCSCGGGCCHH--------------HHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred             -------------ccCCccccCCcChH--------------HHcCCCCcCchHHHHHHHHHHHHHHHcCCCCc
Confidence                         12346789999955              444433 6889999999999999999887753

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.95  E-value=1.5e-27  Score=209.57  Aligned_cols=154  Identities=25%  Similarity=0.388  Sum_probs=119.3

Q ss_pred             hccccccceeeeecCceeEEEEEe--------CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL--------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      ..++|++.+.||+|+||.||+|..        .++..||||+++....  ....+.+.+|+.+                 
T Consensus        79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~  156 (370)
T 2psq_A           79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLLGAC  156 (370)
T ss_dssp             CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCB--HHHHHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred             cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcC--HHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            457899999999999999999964        2356799999976432  2223445555443                 


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCC
Q 039073           99 ---------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNN  127 (257)
Q Consensus        99 ---------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~n  127 (257)
                                                                         ++.|++.||.|||++   +++||||||+|
T Consensus       157 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~N  233 (370)
T 2psq_A          157 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARN  233 (370)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGG
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccchhh
Confidence                                                               344899999999999   99999999999


Q ss_pred             eEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccch
Q 039073          128 ILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDV  207 (257)
Q Consensus       128 ill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Di  207 (257)
                      |+++.++.++|+|||++...........           .....+++.|+|              ||.+.+..++.++||
T Consensus       234 Ill~~~~~~kl~DFG~a~~~~~~~~~~~-----------~~~~~~t~~y~a--------------PE~~~~~~~~~~~Dv  288 (370)
T 2psq_A          234 VLVTENNVMKIADFGLARDINNIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRVYTHQSDV  288 (370)
T ss_dssp             EEECTTCCEEECCCSSCEETTCCCTTCT-----------TTTTTSCGGGCC--------------HHHHHTCCCCHHHHH
T ss_pred             EEECCCCCEEEccccCCcccCcccceec-----------ccCCCcccceEC--------------HhHhcCCCCCcHHHH
Confidence            9999999999999999986543221110           122456788999              555566667899999


Q ss_pred             hhHHHHHHHHHh-CCCCCccc
Q 039073          208 YSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       208 wSlG~~l~ell~-G~~Pf~~~  227 (257)
                      |||||++|||++ |+.||.+.
T Consensus       289 wslG~il~ellt~g~~p~~~~  309 (370)
T 2psq_A          289 WSFGVLMWEIFTLGGSPYPGI  309 (370)
T ss_dssp             HHHHHHHHHHHTTSCCSSTTC
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999 99999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.95  E-value=7.7e-28  Score=216.32  Aligned_cols=154  Identities=21%  Similarity=0.265  Sum_probs=121.2

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL----------------------   99 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l----------------------   99 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||+|++....... ...+.+.+|+.++                      
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   86 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSA-RDHQKLEREARICRLLKHPNIVRLHDSISEEGHHY   86 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHH-HHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCH-HHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEE
Confidence            3467899999999999999999955 579999999997654332 2245566777663                      


Q ss_pred             -----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc---CCCCeEEeeccCcccc
Q 039073          100 -----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLD---SNLEAFVADFGTARLL  147 (257)
Q Consensus       100 -----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~---~~~~~~l~dfg~~~~~  147 (257)
                                                   ..|++.||.|||++   +++||||||+||+++   .++.++|+|||++...
T Consensus        87 lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~  163 (444)
T 3soa_A           87 LIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEV  163 (444)
T ss_dssp             EEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred             EEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence                                         33899999999999   999999999999998   4578999999999765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......             .....||+.|+|              ||.+.+..++.++||||+||++|+|++|.+||.+.
T Consensus       164 ~~~~~~-------------~~~~~gt~~Y~A--------------PE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          164 EGEQQA-------------WFGFAGTPGYLS--------------PEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             CTTCCB-------------CCCSCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCCCce-------------eecccCCcccCC--------------HHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence            432211             123568999999              55556666789999999999999999999999753

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.95  E-value=1.3e-28  Score=226.94  Aligned_cols=153  Identities=25%  Similarity=0.391  Sum_probs=122.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|.. .+|+.||||++.............+.+|+.+                        
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  261 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL  261 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence            467899999999999999999966 4799999999965422111112344555554                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   ++.||+.||.|||++   +|+||||||+||+++.++.++|+|||++.....
T Consensus       262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence                                         344899999999999   999999999999999999999999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              ....+||+.|+|              ||++.+..++.++|+||+||++|||++|+.||.+.
T Consensus       339 ~~~--------------~~~~~GT~~Y~A--------------PEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~  388 (576)
T 2acx_A          339 GQT--------------IKGRVGTVGYMA--------------PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  388 (576)
T ss_dssp             TCC--------------EECCCSCGGGCC--------------HHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCS
T ss_pred             Ccc--------------ccccCCCccccC--------------HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence            211              123478999999              55555556789999999999999999999999864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.95  E-value=6.4e-28  Score=211.42  Aligned_cols=153  Identities=22%  Similarity=0.327  Sum_probs=121.8

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccH---HHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDS---AFVKSFQNEAHV---------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~---~~~~~~~~e~~~---------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +|+.||+|++........   ...+.+.+|+.+                     
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            3577999999999999999999654 799999999976432211   012445566555                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC----CeEEeeccCc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL----EAFVADFGTA  144 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~----~~~l~dfg~~  144 (257)
                                                    +..|++.||.|||++   +++||||||+||+++.++    .++|+|||++
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a  166 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA  166 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence                                          445899999999999   999999999999998776    7999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ........              .....||+.|+|              ||.+.+..++.++|+||+||++|+|++|..||
T Consensus       167 ~~~~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf  218 (361)
T 2yab_A          167 HEIEDGVE--------------FKNIFGTPEFVA--------------PEIVNYEPLGLEADMWSIGVITYILLSGASPF  218 (361)
T ss_dssp             EECCTTCC--------------CCCCCSCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred             eEcCCCCc--------------cccCCCCccEEC--------------chHHcCCCCCccccHHHHHHHHHHHHhCCCCC
Confidence            86543221              123568999999              56666666789999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       219 ~~~  221 (361)
T 2yab_A          219 LGD  221 (361)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            764

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.95  E-value=6.9e-28  Score=211.20  Aligned_cols=153  Identities=22%  Similarity=0.354  Sum_probs=122.7

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH---------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS---------------------  100 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------------------  100 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||+|++...... ....+.+.+|+.++.                     
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  104 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHY  104 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            3457899999999999999999965 47999999999765433 233456677776633                     


Q ss_pred             ------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeeccCcccc
Q 039073          101 ------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADFGTARLL  147 (257)
Q Consensus       101 ------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~dfg~~~~~  147 (257)
                                                    .|++.||.|||++   +++||||||+||+++.++   .++|+|||++...
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~  181 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  181 (362)
T ss_dssp             EEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred             EEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence                                          3899999999999   999999999999998654   5999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....||+.|+|              ||.+.+..++.++||||+||++|+|++|+.||.+.
T Consensus       182 ~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          182 NDSEA--------------WHGFAGTPGYLS--------------PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             TTCCS--------------CCCSCSCTTTCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCcc--------------cccCCCCccccC--------------HHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            42221              123568999999              55556666789999999999999999999999754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=203.99  Aligned_cols=148  Identities=24%  Similarity=0.276  Sum_probs=113.0

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH---------------------------   97 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~---------------------------   97 (257)
                      ++|++.+.||+|+||+||+|... +|+.||||++.......... .....|+.                           
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~-~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDR-ARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHH-HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHH-HHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence            67999999999999999999765 79999999986543322221 22222221                           


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           98 -------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        98 -------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                               .++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus       136 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~  212 (311)
T 3p1a_A          136 TELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA  212 (311)
T ss_dssp             EECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred             EeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccCCC
Confidence                                     1455899999999999   999999999999999999999999999876533221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .              ....||+.|+|||              ...+ .++.++|||||||++|||++|..|+..
T Consensus       213 ~--------------~~~~gt~~y~aPE--------------~~~~-~~~~~~DiwslG~il~el~~g~~~~~~  257 (311)
T 3p1a_A          213 G--------------EVQEGDPRYMAPE--------------LLQG-SYGTAADVFSLGLTILEVACNMELPHG  257 (311)
T ss_dssp             ----------------CCCCCGGGCCGG--------------GGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred             C--------------cccCCCccccCHh--------------HhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            1              2245899999954              4443 468899999999999999999766654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.95  E-value=5e-28  Score=208.06  Aligned_cols=154  Identities=21%  Similarity=0.341  Sum_probs=103.8

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +|+.||+|++........  .+.+.+|+.+                        
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   80 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGT--PSTAIREISLMKELKHENIVRLYDVIHTENKLTL   80 (317)
T ss_dssp             ----------------CEEEEEECSSSCCEEEEEEEECCSTTCS--CHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred             cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccccc--HHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence            4678999999999999999999664 689999999865432111  1223333332                        


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      +..|++.||.|||++   +++||||||+||+++.++.++|+|||++..
T Consensus        81 v~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  157 (317)
T 2pmi_A           81 VFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA  157 (317)
T ss_dssp             EEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred             EEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence                                            445899999999999   999999999999999999999999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......             .....||+.|+|||++...             ..++.++||||+||++|+|++|+.||.+
T Consensus       158 ~~~~~~~-------------~~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~el~~g~~pf~~  211 (317)
T 2pmi_A          158 FGIPVNT-------------FSSEVVTLWYRAPDVLMGS-------------RTYSTSIDIWSCGCILAEMITGKPLFPG  211 (317)
T ss_dssp             TTSCCCC-------------CCCCCSCCTTCCHHHHTTC-------------CCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cCCCccc-------------CCCCcccccccCchHhhCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            5432211             1224678999995554321             2368899999999999999999999976


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      .+
T Consensus       212 ~~  213 (317)
T 2pmi_A          212 TN  213 (317)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.95  E-value=8.6e-28  Score=215.13  Aligned_cols=147  Identities=25%  Similarity=0.308  Sum_probs=117.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..+|++.+.||+|+||.||+|.. .+++.||||++......    ...+..|+.+                         
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~  171 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRF----HRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR  171 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccch----HHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence            56799999999999999999965 46889999999754221    1222233222                         


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC--eEEeeccC
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE--AFVADFGT  143 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~--~~l~dfg~  143 (257)
                                                       ++.|++.||.|||++   +|+||||||+||+++.++.  ++|+|||+
T Consensus       172 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~  248 (429)
T 3kvw_A          172 NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGS  248 (429)
T ss_dssp             TEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             CeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeeccc
Confidence                                             455899999999999   9999999999999999887  99999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.......                ....||+.|+|              ||.+.+..++.++|||||||++|||++|++|
T Consensus       249 a~~~~~~~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~elltG~~p  298 (429)
T 3kvw_A          249 SCYEHQRV----------------YTYIQSRFYRA--------------PEVILGARYGMPIDMWSLGCILAELLTGYPL  298 (429)
T ss_dssp             CEETTCCC----------------CSSCSCGGGCC--------------HHHHHTBCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ceecCCcc----------------cccCCCCCccC--------------hHHHhCCCCCchHHHHhHHHHHHHHHhCCCC
Confidence            86543211                12468899999              5666666679999999999999999999999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+..
T Consensus       299 f~~~~  303 (429)
T 3kvw_A          299 LPGED  303 (429)
T ss_dssp             SCCSS
T ss_pred             CCCCC
Confidence            98643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.95  E-value=8.3e-28  Score=209.61  Aligned_cols=153  Identities=26%  Similarity=0.380  Sum_probs=122.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++...........+.+.+|+.++.                      
T Consensus        52 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  131 (348)
T 1u5q_A           52 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL  131 (348)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEE
Confidence            346699999999999999999965 578999999997654444444556677766633                      


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                   .|++.||.|||++   +++||||||+||+++.++.++|+|||++...... 
T Consensus       132 v~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-  207 (348)
T 1u5q_A          132 VMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-  207 (348)
T ss_dssp             EEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred             EEecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-
Confidence                                         3899999999999   9999999999999999999999999998754321 


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                      ....||+.|+|||++...           ....++.++|||||||++|||++|+.||...
T Consensus       208 ----------------~~~~gt~~y~aPE~~~~~-----------~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          208 ----------------NSFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             ----------------CCCCSCGGGCCHHHHHTT-----------SSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ----------------CcccCCcceeCHhhhccc-----------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                            124689999996655321           1334688999999999999999999999754

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.95  E-value=5.5e-27  Score=200.56  Aligned_cols=163  Identities=27%  Similarity=0.429  Sum_probs=121.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+ .+++.||+|++...   .....+.+.+|+.+                         
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   85 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI   85 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence            57899999999999999999966 46999999988643   23334566666665                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++.......
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A           86 TEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             EECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred             EEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence                                       344899999999999   99999999999999999999999999998764332


Q ss_pred             CCCCccccc-cCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWAL-TDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ......... ...........||+.|+|              ||...+..++.++||||||+++|+|++|..||...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~  225 (310)
T 3s95_A          163 TQPEGLRSLKKPDRKKRYTVVGNPYWMA--------------PEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDY  225 (310)
T ss_dssp             -----------------CCCCSCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             ccccccccccccccccccccCCCcceeC--------------HHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence            211000000 000001123568999999              56666666789999999999999999999999754

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.95  E-value=5.9e-28  Score=208.48  Aligned_cols=153  Identities=29%  Similarity=0.515  Sum_probs=113.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCE----EEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKV----VALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~----vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+ .+++.    ||+|.+......  ...+.+.+|+.+                     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   91 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP--KANKEILDEAYVMASVDNPHVCRLLGICLTSTV   91 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe
Confidence            56799999999999999999965 34543    588887643221  123455566555                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  168 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence                                          334899999999999   99999999999999999999999999998764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....+|..|+|              ||...+..++.++|||||||++|||++ |+.||++.
T Consensus       169 ~~~~~~~-----------~~~~~~t~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  223 (327)
T 3poz_A          169 AEEKEYH-----------AEGGKVPIKWMA--------------LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  223 (327)
T ss_dssp             TTCC------------------CCCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCccccc-----------ccCCCccccccC--------------hHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC
Confidence            3322111           122446778999              666666667899999999999999999 99999864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.95  E-value=5.2e-28  Score=208.72  Aligned_cols=155  Identities=28%  Similarity=0.431  Sum_probs=118.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|... +++.||||++.......  ..+.+.+|+.+                        
T Consensus         5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l   82 (323)
T 3tki_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD--CPENIKKEICINKMLNHENVVKFYGHRREGNIQYL   82 (323)
T ss_dssp             TTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             HhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccc--hHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            3578999999999999999999665 79999999986543221  12344455544                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.||.|||++   +++||||||+||+++.++.++|+|||++.......
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  159 (323)
T 3tki_A           83 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (323)
T ss_dssp             EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             EEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence                                       445899999999999   99999999999999999999999999997654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...           ......||+.|+|||++              .+..+ +.++||||+||++|+|++|+.||+...
T Consensus       160 ~~~-----------~~~~~~gt~~y~aPE~~--------------~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  212 (323)
T 3tki_A          160 RER-----------LLNKMCGTLPYVAPELL--------------KRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (323)
T ss_dssp             EEC-----------CBCSCCSCGGGSCHHHH--------------HCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred             ccc-----------ccCCCccCcCccCcHHh--------------ccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence            110           01235789999995554              44433 568999999999999999999997543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.8e-27  Score=208.91  Aligned_cols=151  Identities=25%  Similarity=0.350  Sum_probs=115.8

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.++                       
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  101 (367)
T 1cm8_A           23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD  101 (367)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred             ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence            357899999999999999999965 5799999999965432 333345566666553                       


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      ..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       102 ~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  178 (367)
T 1cm8_A          102 FTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQA  178 (367)
T ss_dssp             CCCCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeeccccc
Confidence                                            34899999999999   9999999999999999999999999998865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....                ....+|..|+|||+              +.+ ..++.++|+||+||++|||++|+.||.+
T Consensus       179 ~~~~----------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  228 (367)
T 1cm8_A          179 DSEM----------------TGYVVTRWYRAPEV--------------ILNWMRYTQTVDIWSVGCIMAEMITGKTLFKG  228 (367)
T ss_dssp             CSSC----------------CSSCSCGGGCCTHH--------------HHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cccc----------------CcCcCCCCcCCHHH--------------HhCCCCCChhhhHHHHHHHHHHHHhCCCCCCC
Confidence            3211                12457899999554              444 4468899999999999999999999986


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      ..
T Consensus       229 ~~  230 (367)
T 1cm8_A          229 SD  230 (367)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.95  E-value=1.2e-27  Score=215.67  Aligned_cols=166  Identities=25%  Similarity=0.295  Sum_probs=110.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+++.||||++..... .....+.+.+|+.++.                       
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE-DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc-CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            57899999999999999999965 4799999999976432 3333556667776643                       


Q ss_pred             --------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          101 --------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       101 --------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                      .||+.||.|||+.   +|+||||||+||+++.++.++|+|||+++...
T Consensus       131 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          131 ELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             CEEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             eEEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence                                            3899999999999   99999999999999999999999999998764


Q ss_pred             cCCCCCCcccc--------------ccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          149 VDSSNRPYEWA--------------LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       149 ~~~~~~~~~~~--------------~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      ...........              ...........+||+.|+|||++.             .+..++.++||||+||++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-------------~~~~~~~~~DiwSlG~il  274 (458)
T 3rp9_A          208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELIL-------------LQENYTEAIDVWSIGCIF  274 (458)
T ss_dssp             SCTTCCCCCC---------------------------CCCTTCCHHHHT-------------TCCCCCTHHHHHHHHHHH
T ss_pred             CccccccccccCccccccccccccccccccccccCCcccccccChHHhh-------------CCCCCCcHhHHHHHHHHH
Confidence            33221110000              000001123457899999955432             234478999999999999


Q ss_pred             HHHHh-----------CCCCCccc
Q 039073          215 LKVLM-----------GTHPGELL  227 (257)
Q Consensus       215 ~ell~-----------G~~Pf~~~  227 (257)
                      |||++           |+++|.+.
T Consensus       275 ~elltg~~~~~~~~~~~~p~f~g~  298 (458)
T 3rp9_A          275 AELLNMIKENVAYHADRGPLFPGS  298 (458)
T ss_dssp             HHHHTTSTTTCSSGGGCCCSCC--
T ss_pred             HHHHHhccccccccccccccCCCC
Confidence            99999           67777654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.95  E-value=5.5e-28  Score=206.62  Aligned_cols=154  Identities=28%  Similarity=0.376  Sum_probs=116.8

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc------cHHHHHHH--H---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE------DSAFVKSF--Q---------------------   93 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~------~~~~~~~~--~---------------------   93 (257)
                      ..++|++.+.||+|+||.||+|.+ .+++.||||++......      .....++.  .                     
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            367999999999999999999975 57899999998643211      01111100  0                     


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           94 ---------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        94 ---------------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                       .++..+..|++.||.|||++   +++||||||+||+++.++.++|+|
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~D  163 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLAD  163 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECS
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEee
Confidence                                             01222455899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||++........              .....||+.|+|              ||.+.+..++.++||||+||++|+|++|
T Consensus       164 fg~a~~~~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~l~~g  215 (308)
T 3g33_A          164 FGLARIYSYQMA--------------LTPVVVTLWYRA--------------PEVLLQSTYATPVDMWSVGCIFAEMFRR  215 (308)
T ss_dssp             CSCTTTSTTCCC--------------SGGGGCCCSSCC--------------HHHHHTSCCCSTHHHHHHHHHHHHTTTS
T ss_pred             CccccccCCCcc--------------cCCccccccccC--------------chHHcCCCCCchHHHHHHHHHHHHHHhC
Confidence            999876532221              123568999999              5666666678999999999999999999


Q ss_pred             CCCCcccc
Q 039073          221 THPGELLS  228 (257)
Q Consensus       221 ~~Pf~~~~  228 (257)
                      +.||.+.+
T Consensus       216 ~~pf~~~~  223 (308)
T 3g33_A          216 KPLFCGNS  223 (308)
T ss_dssp             SCSCCCSS
T ss_pred             CCCCCCCC
Confidence            99997543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=205.52  Aligned_cols=155  Identities=32%  Similarity=0.415  Sum_probs=118.1

Q ss_pred             hccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ..++|++.+.||+|+||.||+|...    .+..||||+++....  ....+.+.+|+.+                     
T Consensus        47 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  124 (325)
T 3kul_A           47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT--ERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRL  124 (325)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGC
T ss_pred             ChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCc
Confidence            3578999999999999999999763    344699999976432  2334566677665                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          125 AMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             cEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence                                           344899999999999   9999999999999999999999999999876


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .........          .....+|..|+|              ||...+..++.++||||||+++|+|++ |..||..
T Consensus       202 ~~~~~~~~~----------~~~~~~t~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~  257 (325)
T 3kul_A          202 EDDPDAAYT----------TTGGKIPIRWTA--------------PEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN  257 (325)
T ss_dssp             C----CCEE----------CC---CCGGGSC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ccCccceee----------ccCCCCcccccC--------------HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCccc
Confidence            433211100          112345778999              555555557889999999999999999 9999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       258 ~  258 (325)
T 3kul_A          258 M  258 (325)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=9.4e-28  Score=216.31  Aligned_cols=159  Identities=26%  Similarity=0.422  Sum_probs=126.7

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      ..+++....++|++.+.||+|+||+||+|...++..||||+++.....    .+.+.+|+.+                  
T Consensus       179 ~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~iv~l~~~~~~  254 (454)
T 1qcf_A          179 EKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS----VEAFLAEANVMKTLQHDKLVKLHAVVTK  254 (454)
T ss_dssp             CTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             cccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCcc----HHHHHHHHHHHhhCCCCCEeeEEEEEeC
Confidence            345667788999999999999999999998888889999999865432    2345555544                  


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++
T Consensus       255 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a  331 (454)
T 1qcf_A          255 EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLA  331 (454)
T ss_dssp             SSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGG
T ss_pred             CccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCc
Confidence                                              445899999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHP  223 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~P  223 (257)
                      .........            ......++..|+|              ||.+....++.++||||||+++|||++ |+.|
T Consensus       332 ~~~~~~~~~------------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~~l~el~t~g~~P  385 (454)
T 1qcf_A          332 RVIEDNEYT------------AREGAKFPIKWTA--------------PEAINFGSFTIKSDVWSFGILLMEIVTYGRIP  385 (454)
T ss_dssp             GGBCCHHHH------------TTCSSSSCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             eEcCCCcee------------ccCCCcccccccC--------------HHHhccCCCCcHHHHHhHHHHHHHHHhCCCCC
Confidence            865321100            0012345678999              566666667899999999999999999 9999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+.+
T Consensus       386 ~~~~~  390 (454)
T 1qcf_A          386 YPGMS  390 (454)
T ss_dssp             STTCC
T ss_pred             CCCCC
Confidence            98643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.95  E-value=5.2e-28  Score=208.92  Aligned_cols=155  Identities=17%  Similarity=0.289  Sum_probs=119.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE----------------------------   95 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e----------------------------   95 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++.......     .+..|                            
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   82 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAP-----QLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM   82 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSC-----CHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchH-----HHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence            47899999999999999999965 578999999986432211     11122                            


Q ss_pred             ------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-----eEEeeccCccc
Q 039073           96 ------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-----AFVADFGTARL  146 (257)
Q Consensus        96 ------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-----~~l~dfg~~~~  146 (257)
                                              +..++.|++.||.|||+.   +++||||||+||+++.++.     ++|+|||++..
T Consensus        83 v~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           83 VLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             EEEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence                                    222556899999999999   9999999999999998887     99999999987


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ..........      .........||+.|+|              ||.+.+..++.++|+|||||++|||++|+.||.+
T Consensus       160 ~~~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~  219 (330)
T 2izr_A          160 YIDPETKKHI------PYREHKSLTGTARYMS--------------INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQG  219 (330)
T ss_dssp             SBCTTTCCBC------CCCCCCCCCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             eecCCCCccc------cccccCCcCCCccccC--------------hHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccc
Confidence            6443322111      1111234678999999              6666666678999999999999999999999987


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       220 ~  220 (330)
T 2izr_A          220 L  220 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.95  E-value=1.8e-27  Score=208.90  Aligned_cols=153  Identities=12%  Similarity=0.180  Sum_probs=117.2

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHH--------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNE--------------------------   95 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e--------------------------   95 (257)
                      ....+|++.+.||+|+||.||+|.+. +|+.||||++...........+.+..|                          
T Consensus        59 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d  138 (371)
T 3q60_A           59 QGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSD  138 (371)
T ss_dssp             CCEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCE
T ss_pred             CCceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeeh
Confidence            34567999999999999999999754 789999999987432111111111111                          


Q ss_pred             ---------------------------------------------------H------HHHHHHHHHHHHHHhhCCCCCe
Q 039073           96 ---------------------------------------------------A------HVLSTSVAHALSYLHHDCTLSI  118 (257)
Q Consensus        96 ---------------------------------------------------~------~~l~~~i~~~l~~LH~~~~~~i  118 (257)
                                                                         .      ..++.|++.||+|||++   ++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~i  215 (371)
T 3q60_A          139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GL  215 (371)
T ss_dssp             EEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             heecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CC
Confidence                                                               0      13447999999999999   99


Q ss_pred             EeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc
Q 039073          119 VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT  198 (257)
Q Consensus       119 ~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~  198 (257)
                      +||||||+||+++.++.++|+|||++.......                ....+|+.|+|||+              ..+
T Consensus       216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~----------------~~~~~t~~y~aPE~--------------~~~  265 (371)
T 3q60_A          216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----------------PASSVPVTYAPREF--------------LNA  265 (371)
T ss_dssp             EETTCSGGGEEECTTSCEEECCGGGEEETTCEE----------------EGGGSCGGGCCHHH--------------HTC
T ss_pred             ccCcCCHHHEEECCCCCEEEEecceeeecCCCc----------------cCccCCcCCcChhh--------------ccC
Confidence            999999999999999999999999987543111                12456789999554              444


Q ss_pred             --CCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          199 --MVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       199 --~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                        ..++.++|||||||++|||++|+.||.+..
T Consensus       266 ~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~  297 (371)
T 3q60_A          266 STATFTHALNAWQLGLSIYRVWCLFLPFGLVT  297 (371)
T ss_dssp             SEEECCHHHHHHHHHHHHHHHHHSSCSTTBCC
T ss_pred             CCCCcCccccHHHHHHHHHHHHhCCCCCCCcC
Confidence              446889999999999999999999998763

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=1.7e-27  Score=201.72  Aligned_cols=162  Identities=19%  Similarity=0.356  Sum_probs=117.5

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHH--H--------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSF--Q--------------------------   93 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~--~--------------------------   93 (257)
                      ...++|++.+.||+|+||.||+|.. .+++.||||++........ ...+.  .                          
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-LHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCC-HHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchH-HHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            4468899999999999999999965 5788999998654322111 00000  0                          


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCccccccC
Q 039073           94 --------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        94 --------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~~~~  150 (257)
                                          .++..++.|++.|+.|||++   +++||||||+||++   +.++.++|+|||++......
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             ECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence                                12223556899999999999   99999999999999   78899999999999876543


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......      .........||..|+|              ||...+..++.++||||+||++|+|++|+.||.+..
T Consensus       162 ~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  219 (296)
T 4hgt_A          162 RTHQHI------PYRENKNLTGTARYAS--------------INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  219 (296)
T ss_dssp             TTCCBC------CCCCSCCCCSCGGGCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             ccCccC------CCCcccccCCCccccc--------------hHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccc
Confidence            322111      0111234578999999              666666667889999999999999999999998754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.95  E-value=7.3e-28  Score=210.07  Aligned_cols=153  Identities=22%  Similarity=0.324  Sum_probs=117.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc--HHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED--SAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~-----------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++.......  ....+.+.+|+.+                       
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            46799999999999999999965 479999999986432110  0012334444444                       


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccC
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGT  143 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~  143 (257)
                                                      +..|++.||.|||++   +++||||||+||+++.++.   ++|+|||+
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~  179 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV  179 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence                                            344899999999999   9999999999999986654   99999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.........             .....||+.|+|              ||.+.+..++.++||||+||++|+|++|+.|
T Consensus       180 a~~~~~~~~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~ll~g~~p  232 (351)
T 3c0i_A          180 AIQLGESGLV-------------AGGRVGTPHFMA--------------PEVVKREPYGKPVDVWGCGVILFILLSGCLP  232 (351)
T ss_dssp             CEECCTTSCB-------------CCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             eeEecCCCee-------------ecCCcCCcCccC--------------HHHHcCCCCCchHhhHHHHHHHHHHHHCCCC
Confidence            8765432211             123468999999              5555666678999999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |.+.
T Consensus       233 f~~~  236 (351)
T 3c0i_A          233 FYGT  236 (351)
T ss_dssp             SCSS
T ss_pred             CCCc
Confidence            9763

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.95  E-value=1.6e-27  Score=209.39  Aligned_cols=153  Identities=24%  Similarity=0.265  Sum_probs=115.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.+                        
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~  101 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  101 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred             hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence            357899999999999999999965 4688999999975432 22334455566554                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       102 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          102 FQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             CCEEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             ccceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence                                          344899999999999   99999999999999999999999999987553


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              .....||+.|+|              ||...+..++.++||||+||++|+|++|+.||.+.+
T Consensus       179 ~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  230 (371)
T 2xrw_A          179 TSFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  230 (371)
T ss_dssp             -------------------------CTTCC--------------HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccc--------------cCCceecCCccC--------------HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            2211              123468899999              555566667899999999999999999999998653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=205.64  Aligned_cols=152  Identities=22%  Similarity=0.323  Sum_probs=120.4

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccH---HHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDS---AFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~---~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||+|++........   ...+.+.+|+.+                      
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            467999999999999999999664 799999999875432210   013445566655                      


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC----CeEEeeccCcc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL----EAFVADFGTAR  145 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~----~~~l~dfg~~~  145 (257)
                                                   +..|++.||.|||++   +++||||||+||+++.++    .++|+|||++.
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence                                         344899999999999   999999999999998877    79999999988


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .......              .....||+.|+|              ||...+..++.++|+||+||++|+|++|+.||.
T Consensus       167 ~~~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  218 (326)
T 2y0a_A          167 KIDFGNE--------------FKNIFGTPEFVA--------------PEIVNYEPLGLEADMWSIGVITYILLSGASPFL  218 (326)
T ss_dssp             ECCTTSC--------------CCCCCSCTTTCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ECCCCCc--------------cccccCCcCcCC--------------ceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence            6543221              122468999999              555566667899999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       219 ~~  220 (326)
T 2y0a_A          219 GD  220 (326)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=3.2e-27  Score=200.21  Aligned_cols=157  Identities=20%  Similarity=0.390  Sum_probs=121.3

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH--------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA--------------------------   96 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~--------------------------   96 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++.......     .+..|+                          
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP-----QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCC-----HHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchh-----HHHHHHHHHHHhhcCCCCCccccccCCCCceE
Confidence            467899999999999999999975 579999999886543222     122222                          


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCcccc
Q 039073           97 --------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLL  147 (257)
Q Consensus        97 --------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~  147 (257)
                                                ..++.|++.|+.|||++   +++|+||||+||++   +.++.++|+|||++...
T Consensus        82 lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  158 (296)
T 3uzp_A           82 MVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  158 (296)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred             EEEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccc
Confidence                                      22556899999999999   99999999999999   58889999999999876


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .........      .........||..|+|              ||...+..++.++||||||+++|+|++|+.||.+.
T Consensus       159 ~~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  218 (296)
T 3uzp_A          159 RDARTHQHI------PYRENKNLTGTARYAS--------------INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGL  218 (296)
T ss_dssp             BCTTTCCBC------CCCCSCCCCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccccccccc------ccccccccccccccCC--------------hhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCc
Confidence            543322110      0111234578999999              56666666788999999999999999999999875


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       219 ~  219 (296)
T 3uzp_A          219 K  219 (296)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=204.12  Aligned_cols=158  Identities=22%  Similarity=0.285  Sum_probs=120.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||||++........  .+.+.+|+.+                         
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRP--VDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSC--HHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccch--HHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            478999999999999999999665 699999999975432221  2334445444                         


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE----cCCCCeEEeeccC
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL----DSNLEAFVADFGT  143 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill----~~~~~~~l~dfg~  143 (257)
                                                     ++.|++.||.|||+.   +++|+||||+||++    +.++.++|+|||+
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~  162 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence                                           344899999999999   99999999999999    7777899999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +.........              ....||..|+|||++......      ...+..++.++|||||||++|||++|+.|
T Consensus       163 a~~~~~~~~~--------------~~~~gt~~y~aPE~~~~~~~~------~~~~~~~~~~~DiwslG~il~el~~g~~p  222 (319)
T 4euu_A          163 ARELEDDEQF--------------VSLYGTEEYLHPDMYERAVLR------KDHQKKYGATVDLWSIGVTFYHAATGSLP  222 (319)
T ss_dssp             CEECCTTCCB--------------CCCCSCGGGCCHHHHHHHTSC------CCCCCCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ceecCCCCce--------------eecccCCCccCHHHhhhcccc------ccccCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            9865433211              224689999997776433110      01134578899999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |...
T Consensus       223 f~~~  226 (319)
T 4euu_A          223 FRPF  226 (319)
T ss_dssp             EECT
T ss_pred             CCCC
Confidence            9753

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=201.51  Aligned_cols=154  Identities=27%  Similarity=0.370  Sum_probs=116.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||+|++..... .....+.+.+|+.+                         
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED-DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc-chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            478999999999999999999764 699999999876543 23334555666655                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++........
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  157 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD  157 (311)
T ss_dssp             EECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence                                      334899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .             .....||..|+|||++.+.             ..++.++|+||+|+++|+|++|+.||.+..
T Consensus       158 ~-------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Di~slG~il~~l~~g~~p~~~~~  207 (311)
T 4agu_A          158 Y-------------YDDEVATRWYRSPELLVGD-------------TQYGPPVDVWAIGCVFAELLSGVPLWPGKS  207 (311)
T ss_dssp             ---------------------GGGCCHHHHHTC-------------SCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             c-------------cCCCcCCccccChHHHhcC-------------CCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence            1             1234678899995544321             346889999999999999999999997643

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.95  E-value=2.9e-27  Score=208.75  Aligned_cols=163  Identities=19%  Similarity=0.298  Sum_probs=125.2

Q ss_pred             Hhhccccccceeeeec--CceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTG--GYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------   99 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------   99 (257)
                      ....++|++.+.||+|  +||.||+|... +|+.||||++...... ....+.+.+|+.++                   
T Consensus        21 ~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   99 (389)
T 3gni_B           21 LPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADN   99 (389)
T ss_dssp             CCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             cCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC
Confidence            4557789999999999  99999999765 7999999999765432 33456666676663                   


Q ss_pred             ----------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073          100 ----------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus       100 ----------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                        ..|++.||.|||++   +++||||||+||+++.++.++|+|||.+.
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          100 ELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             EEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccce
Confidence                                              33899999999999   99999999999999999999999999876


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc--CCCCCccchhhHHHHHHHHHhCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT--MVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~--~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      ...........      .........||..|+|||+              +.+  ..++.++||||+||++|+|++|+.|
T Consensus       177 ~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~--------------~~~~~~~~~~~~DiwslG~il~el~~g~~p  236 (389)
T 3gni_B          177 SMISHGQRQRV------VHDFPKYSVKVLPWLSPEV--------------LQQNLQGYDAKSDIYSVGITACELANGHVP  236 (389)
T ss_dssp             ECEETTEECSC------BCCCCTTCTTTGGGSCHHH--------------HSTTSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             eeccccccccc------cccccccccccccccCHHH--------------HhccCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence            54322211100      0001123468899999554              444  3468899999999999999999999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+..
T Consensus       237 f~~~~  241 (389)
T 3gni_B          237 FKDMP  241 (389)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            98643

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.95  E-value=2e-27  Score=205.17  Aligned_cols=160  Identities=25%  Similarity=0.380  Sum_probs=121.9

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeC-CC-----CEEEEEEcCccccccHHHHHHHHHHHHH-------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELP-DG-----KVVALKKLHQSETEDSAFVKSFQNEAHV-------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~-----~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------   98 (257)
                      .+.+....++|++.+.||+|+||.||+|... ++     +.||+|.+......  ...+.+.+|+.+             
T Consensus        38 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~iv~~  115 (333)
T 2i1m_A           38 NEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHA--DEKEALMSELKIMSHLGQHENIVNL  115 (333)
T ss_dssp             CGGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccCh--HHHHHHHHHHHHHHhhcCCCCeeeE
Confidence            3456677889999999999999999999653 23     47999999764321  223344444433             


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCC
Q 039073           99 -----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISS  125 (257)
Q Consensus        99 -----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp  125 (257)
                                                                           ++.|++.||.|||++   +++|+||||
T Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp  192 (333)
T 2i1m_A          116 LGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA  192 (333)
T ss_dssp             EEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence                                                                 234799999999999   999999999


Q ss_pred             CCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          126 NNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       126 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                      +||+++.++.++|+|||++..........           ......++..|+|              ||...+..++.++
T Consensus       193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~  247 (333)
T 2i1m_A          193 RNVLLTNGHVAKIGDFGLARDIMNDSNYI-----------VKGNARLPVKWMA--------------PESIFDCVYTVQS  247 (333)
T ss_dssp             GGCEEEGGGEEEBCCCGGGCCGGGCTTSE-----------ECSSCEECGGGSC--------------HHHHHHCCCCHHH
T ss_pred             ceEEECCCCeEEECcccccccccccccee-----------ecCCCCCCccccC--------------HHHhccCCCChHH
Confidence            99999999999999999987654322110           0122456788999              5555555678899


Q ss_pred             chhhHHHHHHHHHh-CCCCCccc
Q 039073          206 DVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       206 DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ||||||+++|+|++ |..||.+.
T Consensus       248 Di~slG~il~el~t~g~~p~~~~  270 (333)
T 2i1m_A          248 DVWSYGILLWEIFSLGLNPYPGI  270 (333)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             HHHHHHHHHHHHHcCCCCCCccc
Confidence            99999999999998 99999864

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.6e-27  Score=205.60  Aligned_cols=149  Identities=26%  Similarity=0.363  Sum_probs=119.6

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+......    ...+.+|+.+                        
T Consensus         3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~----~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l   78 (321)
T 1tki_A            3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD----QVLVKKEISILNIARHRNILHLHESFESMEELVM   78 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH----HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCccc----HHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEE
Confidence            3578999999999999999999654 6889999998754321    2345566655                        


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC--CCCeEEeeccCccccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS--NLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~--~~~~~l~dfg~~~~~~  148 (257)
                                                  +..|++.|+.|||++   +++||||||+||+++.  ++.++|+|||++....
T Consensus        79 v~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~  155 (321)
T 1tki_A           79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence                                        334899999999999   9999999999999987  7899999999988654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....              .....||+.|+|              ||...+..++.++|+||+||++|+|++|..||.+.
T Consensus       156 ~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          156 PGDN--------------FRLLFTAPEYYA--------------PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             TTCE--------------EEEEESCGGGSC--------------HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCCc--------------cccccCChhhcC--------------cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence            2211              123568999999              55555555688999999999999999999999764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.95  E-value=1.7e-27  Score=209.11  Aligned_cols=151  Identities=26%  Similarity=0.353  Sum_probs=109.0

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+                        
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~  105 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE  105 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence            358899999999999999999964 5789999999976432 22234455566655                        


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.||.|||+.   +++||||||+||+++.++.++|+|||++...
T Consensus       106 ~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~  182 (367)
T 2fst_X          106 FNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHT  182 (367)
T ss_dssp             CCCCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-------
T ss_pred             CCeEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccccccc
Confidence                                           334899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ...                .....||..|+|||+              +.+ ..++.++||||+||++|||++|+.||.+
T Consensus       183 ~~~----------------~~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  232 (367)
T 2fst_X          183 ADE----------------MTGYVATRWYRAPEI--------------MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG  232 (367)
T ss_dssp             ------------------------CCCTTCCHHH--------------HTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ccc----------------CCCcCcCcCccChHH--------------HcCCcCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            321                122468899999554              443 3468899999999999999999999986


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      ..
T Consensus       233 ~~  234 (367)
T 2fst_X          233 TD  234 (367)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.95  E-value=4.8e-27  Score=205.12  Aligned_cols=161  Identities=25%  Similarity=0.312  Sum_probs=122.0

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCcccc--------ccHHHHHHHHHHHHHH---------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSET--------EDSAFVKSFQNEAHVL---------   99 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~~~~e~~~l---------   99 (257)
                      .+.++....++|++.+.||+|+||.||+|...+|+.||||++.....        ......+.+.+|+.++         
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            45678888999999999999999999999888899999999865322        1223345666666653         


Q ss_pred             -----------------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073          100 -----------------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus       100 -----------------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                     ..|++.||.|||++   +++|+||||+||+++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLAD  169 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred             ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcC
Confidence                                                           34899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++.........              ....||..|+|||++...             ..++.++|+||+||
T Consensus       170 ~~~~kl~Dfg~~~~~~~~~~~--------------~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~  222 (362)
T 3pg1_A          170 NNDITICDFNLAREDTADANK--------------THYVTHRWYRAPELVMQF-------------KGFTKLVDMWSAGC  222 (362)
T ss_dssp             TCCEEECCTTC-----------------------------CGGGCCHHHHTTC-------------TTCCTHHHHHHHHH
T ss_pred             CCCEEEEecCccccccccccc--------------ceecccceecCcHHhcCC-------------CCCCcHhHHHhHHH
Confidence            999999999998754322211              224678899995544321             34688999999999


Q ss_pred             HHHHHHhCCCCCccc
Q 039073          213 VALKVLMGTHPGELL  227 (257)
Q Consensus       213 ~l~ell~G~~Pf~~~  227 (257)
                      ++|+|++|+.||.+.
T Consensus       223 il~~l~~g~~pf~~~  237 (362)
T 3pg1_A          223 VMAEMFNRKALFRGS  237 (362)
T ss_dssp             HHHHHHHSSCSCCCS
T ss_pred             HHHHHHhCCCCCCCC
Confidence            999999999999864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.95  E-value=2.8e-27  Score=200.79  Aligned_cols=160  Identities=18%  Similarity=0.330  Sum_probs=119.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH-----------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ-----------------------------   93 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~-----------------------------   93 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++........ ..+++.                             
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e   86 (298)
T 1csn_A            8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQ-LRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   86 (298)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCC-HHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHH-HHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence            356899999999999999999965 5789999998864322111 111110                             


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-----eEEeeccCcccccc
Q 039073           94 -------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-----AFVADFGTARLLHV  149 (257)
Q Consensus        94 -------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-----~~l~dfg~~~~~~~  149 (257)
                                         .++..++.|++.||.|||++   +++||||||+||+++.++.     ++|+|||++.....
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~  163 (298)
T 1csn_A           87 LLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  163 (298)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             ecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccc
Confidence                               12223566999999999999   9999999999999987766     99999999987654


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .......      .........||+.|+|              ||...+..++.++||||||+++|+|++|+.||.+.
T Consensus       164 ~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  221 (298)
T 1csn_A          164 PVTKQHI------PYREKKNLSGTARYMS--------------INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  221 (298)
T ss_dssp             TTTCCBC------CCCCCCCCCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccccccc------cccCccCCCCCcccCC--------------chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchh
Confidence            3322111      0011234568999999              55566666788999999999999999999999874

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.95  E-value=5.5e-27  Score=205.26  Aligned_cols=158  Identities=23%  Similarity=0.341  Sum_probs=122.7

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHH----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVL----------------------   99 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l----------------------   99 (257)
                      ...++|++.+.||+|+||.||+|... +++.||||++....  .....+.+.+|+.++                      
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  101 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ  101 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccc
Confidence            34568999999999999999999654 78899999997532  223345566666553                      


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      +.|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       102 ~~~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  178 (364)
T 3qyz_A          102 MKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVA  178 (364)
T ss_dssp             CCCEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             cceEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence                                            34899999999999   9999999999999999999999999999866


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ........          ......||+.|+|||++..             +..++.++||||+||++|+|++|+.||.+.
T Consensus       179 ~~~~~~~~----------~~~~~~gt~~y~aPE~~~~-------------~~~~~~~~DiwslG~il~ell~g~~pf~~~  235 (364)
T 3qyz_A          179 DPDHDHTG----------FLTEYVATRWYRAPEIMLN-------------SKGYTKSIDIWSVGCILAEMLSNRPIFPGK  235 (364)
T ss_dssp             CGGGCBCC----------TTCCCCSCGGGCCHHHHHT-------------BCSCSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCCccc----------cccccccccCCCCCHHhcC-------------CCCCCcchhHHHHHHHHHHHHHCCCCCCCC
Confidence            43221110          0123578999999554432             223688999999999999999999999865


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       236 ~  236 (364)
T 3qyz_A          236 H  236 (364)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.95  E-value=1.7e-27  Score=204.74  Aligned_cols=164  Identities=26%  Similarity=0.420  Sum_probs=110.7

Q ss_pred             cCHHHHHhhccccccceeeeecCceeEEEEEeCC-C---CEEEEEEcCccccccHHHHHHHHHHHHH-------------
Q 039073           36 ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPD-G---KVVALKKLHQSETEDSAFVKSFQNEAHV-------------   98 (257)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------   98 (257)
                      ..++++....++|++.+.||+|+||.||+|.... +   ..||||++......... .+.+.+|+.+             
T Consensus        13 ~~~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~E~~~l~~l~h~~iv~~~   91 (323)
T 3qup_A           13 EKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSD-IEEFLREAACMKEFDHPHVAKLV   91 (323)
T ss_dssp             ---CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHH-HHHHHHHHHHHTTCCCTTBCCCC
T ss_pred             HHhhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHH-HHHHHHHHHHHHHCCCCceehhh
Confidence            3455566678899999999999999999997643 3   27999999764322221 3344444443             


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCe
Q 039073           99 --------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNI  128 (257)
Q Consensus        99 --------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~ni  128 (257)
                                                                        +..|++.||.|||++   +++||||||+||
T Consensus        92 ~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NI  168 (323)
T 3qup_A           92 GVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNC  168 (323)
T ss_dssp             EEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred             ceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceE
Confidence                                                              445899999999999   999999999999


Q ss_pred             EEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchh
Q 039073          129 LLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVY  208 (257)
Q Consensus       129 ll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Diw  208 (257)
                      +++.++.++|+|||++...........           .....+++.|+|              ||...+..++.++|||
T Consensus       169 li~~~~~~kl~Dfg~a~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~  223 (323)
T 3qup_A          169 MLAEDMTVCVADFGLSRKIYSGDYYRQ-----------GCASKLPVKWLA--------------LESLADNLYTVHSDVW  223 (323)
T ss_dssp             EECTTSCEEECCCCC----------------------------CCGGGCC--------------HHHHHHCCCCHHHHHH
T ss_pred             EEcCCCCEEEeeccccccccccccccc-----------cccccCcccccC--------------chhhcCCCCCCccchh
Confidence            999999999999999876543221110           122345778999              5556666678899999


Q ss_pred             hHHHHHHHHHh-CCCCCcccc
Q 039073          209 SFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       209 SlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ||||++|+|++ |+.||.+..
T Consensus       224 slG~il~ell~~g~~p~~~~~  244 (323)
T 3qup_A          224 AFGVTMWEIMTRGQTPYAGIE  244 (323)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCC
T ss_pred             hHHHHHHHHHhCCCCCccccC
Confidence            99999999999 999998643

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.95  E-value=2e-27  Score=200.30  Aligned_cols=152  Identities=32%  Similarity=0.498  Sum_probs=117.8

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++.............+.+|+.+                        
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            4678999999999999999999654 688999999865432222222344445444                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++.......
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~  163 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR  163 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCccc
Confidence                                       445899999999999   99999999999999999999999999875443221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .               ....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       164 ~---------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  210 (279)
T 3fdn_A          164 R---------------TDLCGTLDYLP--------------PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  210 (279)
T ss_dssp             -------------------CCCCTTCC--------------HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             c---------------cccCCCCCccC--------------HhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence            1               22467889999              55566666788999999999999999999999854

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=203.09  Aligned_cols=157  Identities=22%  Similarity=0.333  Sum_probs=115.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH-----------------------HHHHHHHHHHHH-
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS-----------------------AFVKSFQNEAHV-   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~-----------------------~~~~~~~~e~~~-   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++........                       ...+.+.+|+.+ 
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            467899999999999999999965 4688999999975432111                       112345666665 


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCC
Q 039073           99 ---------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNN  127 (257)
Q Consensus        99 ---------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~n  127 (257)
                                                                         +..|++.||.|||++   +++|+||||+|
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~N  167 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSN  167 (298)
T ss_dssp             HTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGG
T ss_pred             HhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHH
Confidence                                                               344899999999999   99999999999


Q ss_pred             eEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccch
Q 039073          128 ILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDV  207 (257)
Q Consensus       128 ill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Di  207 (257)
                      |+++.++.++|+|||++.........             .....||+.|+|||++.....           ..++.++|+
T Consensus       168 il~~~~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~gt~~y~aPE~~~~~~~-----------~~~~~~~Di  223 (298)
T 2zv2_A          168 LLVGEDGHIKIADFGVSNEFKGSDAL-------------LSNTVGTPAFMAPESLSETRK-----------IFSGKALDV  223 (298)
T ss_dssp             EEECTTSCEEECCCTTCEECSSSSCE-------------ECCCCSCGGGCCGGGCCTTCC-----------CEESHHHHH
T ss_pred             EEECCCCCEEEecCCCcccccccccc-------------ccCCcCCccccChhhhccCCC-----------CCCCchhhh
Confidence            99999999999999998765432110             122468999999555432210           002568999


Q ss_pred             hhHHHHHHHHHhCCCCCccc
Q 039073          208 YSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       208 wSlG~~l~ell~G~~Pf~~~  227 (257)
                      ||+||++|+|++|+.||...
T Consensus       224 ~slG~~l~~l~~g~~pf~~~  243 (298)
T 2zv2_A          224 WAMGVTLYCFVFGQCPFMDE  243 (298)
T ss_dssp             HHHHHHHHHHHHSSCSSCCS
T ss_pred             HhHHHHHHHHHHCCCCCCCc
Confidence            99999999999999999753

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.95  E-value=5.3e-27  Score=206.73  Aligned_cols=153  Identities=25%  Similarity=0.318  Sum_probs=118.2

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH----------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH----------------------   97 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~----------------------   97 (257)
                      .....++|++.+.||+|+||.||+|... +++.||||+++....    ....+..|+.                      
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~  124 (382)
T 2vx3_A           49 GEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKA----FLNQAQIEVRLLELMNKHDTEMKYYIVHLKRH  124 (382)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHH----HHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEE
T ss_pred             CCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHH----HHHHHHHHHHHHHHHHhcccccceeEEEeeee
Confidence            3445789999999999999999999654 688999999975321    1222222222                      


Q ss_pred             ------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc--CCCCeEEe
Q 039073           98 ------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD--SNLEAFVA  139 (257)
Q Consensus        98 ------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~--~~~~~~l~  139 (257)
                                                          .++.|++.||.|||.+ ..+|+||||||+||+++  .++.++|+
T Consensus       125 ~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~  203 (382)
T 2vx3_A          125 FMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV  203 (382)
T ss_dssp             EEETTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred             eccCCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence                                                2455899999999942 23899999999999995  47789999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||++.......                ....||+.|+|              ||.+.+..++.++|||||||++|||++
T Consensus       204 DFG~a~~~~~~~----------------~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~ellt  253 (382)
T 2vx3_A          204 DFGSSCQLGQRI----------------YQYIQSRFYRS--------------PEVLLGMPYDLAIDMWSLGCILVEMHT  253 (382)
T ss_dssp             CCTTCEETTCCC----------------CSSCSCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             eccCceeccccc----------------ccccCCccccC--------------hHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence            999987653211                12468899999              666666668999999999999999999


Q ss_pred             CCCCCcccc
Q 039073          220 GTHPGELLS  228 (257)
Q Consensus       220 G~~Pf~~~~  228 (257)
                      |+.||.+.+
T Consensus       254 g~~pf~~~~  262 (382)
T 2vx3_A          254 GEPLFSGAN  262 (382)
T ss_dssp             SSCSSCCSS
T ss_pred             CCCCCCCCC
Confidence            999998643

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.95  E-value=1.7e-27  Score=208.46  Aligned_cols=161  Identities=21%  Similarity=0.352  Sum_probs=118.3

Q ss_pred             hccccccceeeeecCceeEEEEEeCC------CCEEEEEEcCccccccHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPD------GKVVALKKLHQSETEDSAFVKSF-------------------------   92 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vaiK~~~~~~~~~~~~~~~~-------------------------   92 (257)
                      ..++|++.+.||+|+||.||+|.+..      ++.||||++...........+.+                         
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            46689999999999999999997643      47899999765421110000000                         


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc--C
Q 039073           93 --------------------------------------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD--S  132 (257)
Q Consensus        93 --------------------------------------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~--~  132 (257)
                                                            ..++..++.|++.||.|||++   +++||||||+||+++  .
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSC
T ss_pred             EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCC
Confidence                                                  012223566999999999999   999999999999999  8


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++............      .........||+.|+|              ||.+.+..++.++|||||||
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~  249 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVHKAY------AADPKRCHDGTIEFTS--------------IDAHNGVAPSRRGDLEILGY  249 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCCCCS------SCCSSCCCCCCTTTCC--------------HHHHTTCCCCHHHHHHHHHH
T ss_pred             CCeEEEEECCcceecccCCccccc------ccCcccccCCCCCccC--------------HHHhCCCCCCchhhHHHHHH
Confidence            899999999999876433221111      0001123468999999              66666666789999999999


Q ss_pred             HHHHHHhCCCCCccc
Q 039073          213 VALKVLMGTHPGELL  227 (257)
Q Consensus       213 ~l~ell~G~~Pf~~~  227 (257)
                      ++|||++|+.||.+.
T Consensus       250 ~l~el~~g~~Pf~~~  264 (364)
T 3op5_A          250 CMIQWLTGHLPWEDN  264 (364)
T ss_dssp             HHHHHHHSCCTTGGG
T ss_pred             HHHHHHhCCCCcccc
Confidence            999999999999863

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.95  E-value=1.2e-27  Score=216.82  Aligned_cols=152  Identities=25%  Similarity=0.392  Sum_probs=120.8

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|.+.+.||+|+||+||+|.+. +|+.||||++.............+.+|+.+                         
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            578999999999999999999664 799999999975432222223455666655                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++........
T Consensus        95 ~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~  171 (476)
T 2y94_A           95 MEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF  171 (476)
T ss_dssp             EECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccccc
Confidence                                      445899999999999   999999999999999999999999999886543211


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    ....+||+.|+|||+              +.+..+ +.++|+||+||++|+|++|+.||++.
T Consensus       172 --------------~~~~~gt~~y~aPE~--------------~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  219 (476)
T 2y94_A          172 --------------LRTSCGSPNYAAPEV--------------ISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD  219 (476)
T ss_dssp             --------------BCCCCSCSTTCCHHH--------------HTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --------------ccccCCCcCeEChhh--------------ccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC
Confidence                          123468999999554              444433 57899999999999999999999853

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.95  E-value=1.1e-27  Score=210.93  Aligned_cols=160  Identities=23%  Similarity=0.349  Sum_probs=121.9

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      +.+....++|++.+.||+|+||.||+|... +++.||||+++...  .....+.+.+|+.+                   
T Consensus       107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  184 (377)
T 3cbl_A          107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK  184 (377)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS--CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC
Confidence            345566789999999999999999999775 78999999987542  12223344445444                   


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.|++|||++   +++||||||+||+++.++.++|+|||++.
T Consensus       185 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~  261 (377)
T 3cbl_A          185 QPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSR  261 (377)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCce
Confidence                                             445899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf  224 (257)
                      ..........           .....++..|+|              ||.+.+..++.++|||||||++|||++ |..||
T Consensus       262 ~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwslG~il~el~t~g~~p~  316 (377)
T 3cbl_A          262 EEADGVYAAS-----------GGLRQVPVKWTA--------------PEALNYGRYSSESDVWSFGILLWETFSLGASPY  316 (377)
T ss_dssp             ECTTSEEECC-----------SSCCEEEGGGSC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             ecCCCceeec-----------CCCCCCCcCcCC--------------HhHhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            5432110000           011234677999              555555557889999999999999998 99999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      .+..
T Consensus       317 ~~~~  320 (377)
T 3cbl_A          317 PNLS  320 (377)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.94  E-value=3.7e-27  Score=197.34  Aligned_cols=152  Identities=25%  Similarity=0.394  Sum_probs=120.5

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...++|++.+.||+|+||.||+|...++..||+|++.......    +.+.+|+.+                        
T Consensus         5 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (268)
T 3sxs_A            5 LKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE----DEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYI   80 (268)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred             echhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcH----HHHHHHHHHHHhCCCCCEeeEEEEEccCCceEE
Confidence            3567899999999999999999988888889999998654432    234444443                        


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++......
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  157 (268)
T 3sxs_A           81 VTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD  157 (268)
T ss_dssp             EEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred             EEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence                                        445899999999999   9999999999999999999999999998765432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ....            .....++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||+..
T Consensus       158 ~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (268)
T 3sxs_A          158 QYVS------------SVGTKFPVKWSA--------------PEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY  209 (268)
T ss_dssp             CEEE------------CCSCCCCGGGCC--------------HHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             hhhc------------ccCCCcCcccCC--------------HHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc
Confidence            2110            112345678999              555555557889999999999999999 99999854

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.94  E-value=1.4e-27  Score=212.80  Aligned_cols=162  Identities=17%  Similarity=0.148  Sum_probs=117.6

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHH-------------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVK-------------------------------   90 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~-------------------------------   90 (257)
                      ....+|...+.||+|+||.||+|.+ .+|+.||||++...........+                               
T Consensus        75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~  154 (413)
T 3dzo_A           75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  154 (413)
T ss_dssp             SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred             CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence            3456688999999999999999974 57999999998732211100000                               


Q ss_pred             --------------------------------------HH---------------HHHHHHHHHHHHHHHHHHhhCCCCC
Q 039073           91 --------------------------------------SF---------------QNEAHVLSTSVAHALSYLHHDCTLS  117 (257)
Q Consensus        91 --------------------------------------~~---------------~~e~~~l~~~i~~~l~~LH~~~~~~  117 (257)
                                                            .+               ..+...++.|++.||.|||++   +
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~  231 (413)
T 3dzo_A          155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G  231 (413)
T ss_dssp             EEEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hhcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence                                                  00               012223557999999999999   9


Q ss_pred             eEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh
Q 039073          118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY  197 (257)
Q Consensus       118 i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~  197 (257)
                      |+||||||+||+++.++.++|+|||++......                .....| +.|+|||++.+......  +  ..
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----------------~~~~~g-~~y~aPE~~~~~~~~~~--~--~~  290 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----------------AVSPIG-RGFAPPETTAERMLPFG--Q--HH  290 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEE----------------ECCCCC-TTTCCHHHHHHHTSTTG--G--GC
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCc----------------cccCCC-CceeCchhhhccccccc--c--cc
Confidence            999999999999999999999999998754322                122456 89999887754321100  0  03


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          198 TMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       198 ~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      +..++.++|||||||++|||++|+.||....
T Consensus       291 ~~~~~~~~DvwSlGvil~elltg~~Pf~~~~  321 (413)
T 3dzo_A          291 PTLMTFAFDTWTLGLAIYWIWCADLPNTDDA  321 (413)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHSSCCCCTTG
T ss_pred             CcCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            3346789999999999999999999998654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.94  E-value=4.6e-27  Score=204.49  Aligned_cols=159  Identities=21%  Similarity=0.346  Sum_probs=119.7

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++........ ....+.+|+.+                        
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   93 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG-FPITALREIKILQLLKHENVVNLIEICRTKASPYN   93 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSS-SCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-----
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccccccc-chHHHHHHHHHHHhccCCCcccHhheeeccccccc
Confidence            357899999999999999999966 5799999999865432211 01122233332                        


Q ss_pred             -----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 -----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 -----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                         +..|++.||.|||++   +++||||||+||+++.++.++|+|||+
T Consensus        94 ~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  170 (351)
T 3mi9_A           94 RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGL  170 (351)
T ss_dssp             ---CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             cCCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchh
Confidence                                               455899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +...........         .......||+.|+|||++.+.             ..++.++||||+||++|+|++|+.|
T Consensus       171 a~~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~ell~g~~p  228 (351)
T 3mi9_A          171 ARAFSLAKNSQP---------NRYTNRVVTLWYRPPELLLGE-------------RDYGPPIDLWGAGCIMAEMWTRSPI  228 (351)
T ss_dssp             CEECCCCSSSSC---------CCCCSSCSCGGGCCHHHHTTC-------------CSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cccccccccccc---------cccCCcccccCccCchhhcCC-------------CCCCcHhHHHHHHHHHHHHHhCCCC
Confidence            986543221111         011235689999995544322             2368899999999999999999999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+..
T Consensus       229 f~~~~  233 (351)
T 3mi9_A          229 MQGNT  233 (351)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            98643

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.94  E-value=9.4e-27  Score=196.33  Aligned_cols=152  Identities=22%  Similarity=0.352  Sum_probs=121.3

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++...... ....+.+.+|+.++                       
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence            467899999999999999999965 46899999999765433 22345566666653                       


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccCccccc
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGTARLLH  148 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~~~~~~  148 (257)
                                                  ..|++.|+.|||+.   +++|+||||+||+++.++.   ++|+|||.+....
T Consensus        83 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~  159 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN  159 (284)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence                                        34899999999999   9999999999999986655   9999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              ....||+.|+|              ||...+..++.++|+||+|+++|+|++|+.||.+.
T Consensus       160 ~~~~~--------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          160 DSEAW--------------HGFAGTPGYLS--------------PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             SSCBC--------------CCSCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCccc--------------cCCCCCcCCcC--------------chhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence            32211              22468899999              55556666788999999999999999999999753

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=1.9e-27  Score=199.38  Aligned_cols=153  Identities=26%  Similarity=0.389  Sum_probs=121.5

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ....++|++.+.||+|+||.||+|...+++.||+|++.......    +.+.+|+.+                       
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (269)
T 4hcu_A            6 VIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   81 (269)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             EeChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCH----HHHHHHHHHHHhCCCCCEeeEEEEEecCCceE
Confidence            34467899999999999999999988788899999998654432    234455544                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++.....
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  158 (269)
T 4hcu_A           82 LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD  158 (269)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCC
T ss_pred             EEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccc
Confidence                                         344899999999999   999999999999999999999999999875532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .....            .....++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||...
T Consensus       159 ~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~  211 (269)
T 4hcu_A          159 DQYTS------------STGTKFPVKWAS--------------PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  211 (269)
T ss_dssp             HHHHS------------TTSTTCCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccc------------ccCcccccccCC--------------HHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence            21000            112345778999              555566667889999999999999999 99999864

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.94  E-value=1.5e-27  Score=209.97  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=114.0

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH---------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN---------------------------   94 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~---------------------------   94 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||||++...........+.+.+                           
T Consensus        70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~  149 (377)
T 3byv_A           70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  149 (377)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred             CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence            3468899999999999999999975 579999999985321111000111111                           


Q ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHHHHhhCCCCC
Q 039073           95 ---------------------------------------------------------EAHVLSTSVAHALSYLHHDCTLS  117 (257)
Q Consensus        95 ---------------------------------------------------------e~~~l~~~i~~~l~~LH~~~~~~  117 (257)
                                                                               ++..++.|++.||+|||++   +
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~  226 (377)
T 3byv_A          150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G  226 (377)
T ss_dssp             EEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---C
Confidence                                                                     1122567999999999999   9


Q ss_pred             eEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh
Q 039073          118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY  197 (257)
Q Consensus       118 i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~  197 (257)
                      ++||||||+||+++.++.++|+|||++......                .....| ..|+|||++.......   -....
T Consensus       227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~----------------~~~~~g-~~y~aPE~~~~~~~~~---~~~~~  286 (377)
T 3byv_A          227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR----------------VVSSVS-RGFEPPELEARRATIS---YHRDR  286 (377)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTCE----------------EECCCC-TTCCCHHHHHHHTSTH---HHHCC
T ss_pred             eecCCCCHHHEEEcCCCCEEEEechhheecCCc----------------ccCCCC-cCccChhhhccccccc---ccccc
Confidence            999999999999999999999999998743211                122456 8999966554330000   00000


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          198 TMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       198 ~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...++.++|||||||++|||++|+.||.+..
T Consensus       287 ~~~~~~~~DvwSlG~il~elltg~~Pf~~~~  317 (377)
T 3byv_A          287 RTLMTFSFDAWALGLVIYWIWCADLPITKDA  317 (377)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             cccCChhhhHHHHHHHHHHHHHCCCCCcccc
Confidence            1157889999999999999999999998644

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.94  E-value=9.1e-27  Score=208.60  Aligned_cols=166  Identities=25%  Similarity=0.294  Sum_probs=118.3

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.++                       
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  102 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE-DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF  102 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc-ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence            367899999999999999999965 4688999999976432 333345666776663                       


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      ..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       103 ~~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~  179 (432)
T 3n9x_A          103 DELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTI  179 (432)
T ss_dssp             CCEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CeEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence                                            33899999999999   9999999999999999999999999999876


Q ss_pred             ccCCCCCCcc---------ccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH
Q 039073          148 HVDSSNRPYE---------WALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL  218 (257)
Q Consensus       148 ~~~~~~~~~~---------~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell  218 (257)
                      ..........         ..............||+.|+|||++.             .+..++.++||||+||++|||+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~-------------~~~~~~~~~DiwSlG~il~ell  246 (432)
T 3n9x_A          180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELIL-------------LQENYTKSIDIWSTGCIFAELL  246 (432)
T ss_dssp             -------------------------------CCCCCTTCCHHHHT-------------TCSCCCTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhccccCCCCCccccCHHHHh-------------cCCCCCcccccchHHHHHHHHH
Confidence            4332110000         00000001123457899999955432             3334688999999999999999


Q ss_pred             hCCCCCcc
Q 039073          219 MGTHPGEL  226 (257)
Q Consensus       219 ~G~~Pf~~  226 (257)
                      +|..||..
T Consensus       247 ~g~~p~~~  254 (432)
T 3n9x_A          247 NMLQSHIN  254 (432)
T ss_dssp             TTCTTTCS
T ss_pred             hccccccc
Confidence            86666543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.94  E-value=9.6e-27  Score=197.49  Aligned_cols=154  Identities=23%  Similarity=0.364  Sum_probs=123.8

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|.+.+.||+|+||.||+|... +++.||+|++...........+.+..|+.+                        
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   92 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV   92 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence            3578999999999999999999765 688999999876544444445566666655                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        93 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  169 (294)
T 2rku_A           93 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG  169 (294)
T ss_dssp             EEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence                                       344899999999999   99999999999999999999999999987654222


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       170 ~~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  218 (294)
T 2rku_A          170 ER-------------KKVLCGTPNYIA--------------PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  218 (294)
T ss_dssp             CC-------------BCCCCSCCSSCC--------------HHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cc-------------cccccCCCCcCC--------------cchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            11             122468889999              55555555788999999999999999999999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=203.11  Aligned_cols=153  Identities=29%  Similarity=0.524  Sum_probs=111.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCE----EEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKV----VALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~----vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+ .+++.    |++|.+........  .+.+.+|+.+                     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~--~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   91 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKA--NKEILDEAYVMASVDNPHVCRLLGICLTSTV   91 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCC--HHHHHHHHHHHTTCCBTTBCCCCEEEESSSE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHH--HHHHHHHHHHHHhCCCCCeeEEEEEEecCCc
Confidence            57899999999999999999965 34543    57777754322211  2344455444                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus        92 ~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~  168 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred             eEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence                                          445899999999999   99999999999999999999999999998654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....++..|+|              ||...+..++.++|||||||++|+|++ |+.||++.
T Consensus       169 ~~~~~~~-----------~~~~~~t~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  223 (327)
T 3lzb_A          169 AEEKEYH-----------AEGGKVPIKWMA--------------LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  223 (327)
T ss_dssp             ----------------------CCCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             Ccccccc-----------ccCCCccccccC--------------HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            3322111           122346778999              566666667899999999999999999 99999864

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=3.9e-27  Score=204.23  Aligned_cols=159  Identities=24%  Similarity=0.362  Sum_probs=119.6

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      ++....++|++.+.||+|+||.||+|..      .+++.||+|++......  ...+.+.+|+.+               
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~  116 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADS--SEREALMSELKMMTQLGSHENIVNLLG  116 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCH--HHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            4556778999999999999999999964      24668999998753211  111223333222               


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHhhCCCCCe
Q 039073           99 ------------------------------------------------------------LSTSVAHALSYLHHDCTLSI  118 (257)
Q Consensus        99 ------------------------------------------------------------l~~~i~~~l~~LH~~~~~~i  118 (257)
                                                                                  ++.|++.||.|||++   ++
T Consensus       117 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  193 (344)
T 1rjb_A          117 ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SC  193 (344)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             EEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence                                                                        445899999999999   99


Q ss_pred             EeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc
Q 039073          119 VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT  198 (257)
Q Consensus       119 ~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~  198 (257)
                      +|+||||+||+++.++.++|+|||++..........           ......||+.|+|              ||...+
T Consensus       194 vH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~-----------~~~~~~~t~~y~a--------------PE~~~~  248 (344)
T 1rjb_A          194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYV-----------VRGNARLPVKWMA--------------PESLFE  248 (344)
T ss_dssp             EETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSE-----------EETTEEECGGGCC--------------HHHHHH
T ss_pred             ccCCCChhhEEEcCCCcEEeCCCccCcccccCccce-----------eccCccCccCccC--------------HHHhcc
Confidence            999999999999999999999999988654332110           0123456788999              555555


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          199 MVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       199 ~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ..++.++||||||+++|+|++ |..||.+..
T Consensus       249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~  279 (344)
T 1rjb_A          249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  279 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             CCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence            667889999999999999998 999998653

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.94  E-value=8.8e-27  Score=201.78  Aligned_cols=154  Identities=23%  Similarity=0.364  Sum_probs=124.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|.+.+.||+|+||.||++... +++.||+|++...........+.+..|+.+                        
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            4578999999999999999999664 688999999876544444445566666655                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++.......
T Consensus       119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  195 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG  195 (335)
T ss_dssp             EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence                                       344899999999999   99999999999999999999999999987654222


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       196 ~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  244 (335)
T 2owb_A          196 ER-------------KKVLCGTPNYIA--------------PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  244 (335)
T ss_dssp             CC-------------BCCCCSCCSSCC--------------HHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cc-------------ccccCCCccccC--------------HHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence            11             122468899999              55555556788999999999999999999999853

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.94  E-value=1.3e-26  Score=197.74  Aligned_cols=165  Identities=33%  Similarity=0.525  Sum_probs=129.7

Q ss_pred             CCcCHHHHHhhccccccc------eeeeecCceeEEEEEeCCCCEEEEEEcCcccc-ccHHHHHHHHHHHHHH-------
Q 039073           34 GKISYEDLINATEEFHIK------YCIGTGGYGSVYKAELPDGKVVALKKLHQSET-EDSAFVKSFQNEAHVL-------   99 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l-------   99 (257)
                      ..+++.++...+++|...      +.||+|+||.||+|.. +++.||+|++..... ......+.+.+|+.++       
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            568999999999999887      9999999999999987 578899999875421 2222345566666553       


Q ss_pred             -----------------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073          100 -----------------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus       100 -----------------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                     +.|++.||.|||++   +++|+||||+||+++.
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~  168 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDE  168 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECT
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcC
Confidence                                                           34899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++..........           ......|+..|+|||++.              + .++.++|+||||+
T Consensus       169 ~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~g~~~y~aPE~~~--------------~-~~~~~~Dv~slG~  222 (307)
T 2nru_A          169 AFTAKISDFGLARASEKFAQTV-----------MTSRIVGTTAYMAPEALR--------------G-EITPKSDIYSFGV  222 (307)
T ss_dssp             TCCEEECCCTTCEECCSCSSCE-----------ECSSCCSCGGGCCHHHHT--------------T-EECTHHHHHHHHH
T ss_pred             CCcEEEeecccccccccccccc-----------cccccCCCcCcCChHHhc--------------C-CCCccchhHHHHH
Confidence            9999999999987654321110           012246899999966543              2 2578999999999


Q ss_pred             HHHHHHhCCCCCcccc
Q 039073          213 VALKVLMGTHPGELLS  228 (257)
Q Consensus       213 ~l~ell~G~~Pf~~~~  228 (257)
                      ++|+|++|+.||+...
T Consensus       223 il~~l~~g~~p~~~~~  238 (307)
T 2nru_A          223 VLLEIITGLPAVDEHR  238 (307)
T ss_dssp             HHHHHHHCCCSBCTTB
T ss_pred             HHHHHHHCCCCcccCc
Confidence            9999999999998643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.94  E-value=3.4e-27  Score=212.58  Aligned_cols=158  Identities=28%  Similarity=0.401  Sum_probs=121.6

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      .+.+....++|++.+.||+|+||.||+|....+..||||+++......    +.+.+|+.+                   
T Consensus       176 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~hp~iv~~~~~~~~~  251 (452)
T 1fmk_A          176 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP----EAFLQEAQVMKKLRHEKLVQLYAVVSEE  251 (452)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCH----HHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            345566778899999999999999999988877889999998654332    345555554                   


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~  328 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLAR  328 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccce
Confidence                                             344899999999999   99999999999999999999999999997


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf  224 (257)
                      .........            .....++..|+|              ||.+.+..++.++||||||+++|||++ |+.||
T Consensus       329 ~~~~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~  382 (452)
T 1fmk_A          329 LIEDNEYTA------------RQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELTTKGRVPY  382 (452)
T ss_dssp             --------------------------CCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             ecCCCceec------------ccCCcccccccC--------------HhHHhcCCCCccccHHhHHHHHHHHHhCCCCCC
Confidence            654221110            112345778999              566666667899999999999999999 99999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      .+..
T Consensus       383 ~~~~  386 (452)
T 1fmk_A          383 PGMV  386 (452)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8643

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.94  E-value=6.9e-27  Score=208.69  Aligned_cols=153  Identities=29%  Similarity=0.374  Sum_probs=115.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHH------------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQ------------------------------   93 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~------------------------------   93 (257)
                      ..+|++.+.||+|+||+||+|.+. +|+.||||++..........++.+.                              
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~  132 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVL  132 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeeh
Confidence            457999999999999999999764 6999999998643211110010000                              


Q ss_pred             -----------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccCcccccc
Q 039073           94 -----------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLHV  149 (257)
Q Consensus        94 -----------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~~~~~~~  149 (257)
                                             .++..+..|++.||.|||++   +|+||||||+||+++.+ +.++|+|||+++....
T Consensus       133 e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          133 DYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             ECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             hcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence                                   12334567999999999999   99999999999999965 5679999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              ....||+.|+|||+              +.+. .++.++||||+||++|||++|+.||.+.+
T Consensus       210 ~~~~--------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~  261 (420)
T 1j1b_A          210 GEPN--------------VSYICSRYYRAPEL--------------IFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS  261 (420)
T ss_dssp             TCCC--------------CSCCSCTTSCCHHH--------------HTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCCc--------------eeeeeCCCcCCHHH--------------HcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            2211              12467899999554              4332 46889999999999999999999998654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.94  E-value=3.6e-27  Score=203.59  Aligned_cols=167  Identities=24%  Similarity=0.326  Sum_probs=125.9

Q ss_pred             cccCCCCcCHHHHHhhccccccc-eeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH--------
Q 039073           29 VWNYDGKISYEDLINATEEFHIK-YCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------   98 (257)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------   98 (257)
                      ....+..+.+.......++|.+. +.||+|+||.||+|... +++.||+|++........ ....+.+|+.+        
T Consensus        11 ~~~~~~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~   89 (327)
T 3lm5_A           11 VDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQD-CRAEILHEIAVLELAKSCP   89 (327)
T ss_dssp             -----CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEE-CHHHHHHHHHHHHHTTTCT
T ss_pred             ccccchhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchH-HHHHHHHHHHHHHhccCCC
Confidence            34455666677777778889998 89999999999999654 699999999976432221 12344455444        


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           99 ----------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        99 ----------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                    +..|++.||.|||++   +++||||||+||+++.
T Consensus        90 ~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~  166 (327)
T 3lm5_A           90 RVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSS  166 (327)
T ss_dssp             TBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESC
T ss_pred             CEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEec
Confidence                                                          344899999999999   9999999999999987


Q ss_pred             ---CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhh
Q 039073          133 ---NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYS  209 (257)
Q Consensus       133 ---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwS  209 (257)
                         ++.++|+|||++........              .....||+.|+|              ||...+..++.++|+||
T Consensus       167 ~~~~~~~kL~Dfg~a~~~~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~Diws  218 (327)
T 3lm5_A          167 IYPLGDIKIVDFGMSRKIGHACE--------------LREIMGTPEYLA--------------PEILNYDPITTATDMWN  218 (327)
T ss_dssp             BTTBCCEEECCGGGCEEC-----------------------CCCGGGCC--------------HHHHTTCCCCTHHHHHH
T ss_pred             CCCCCcEEEeeCccccccCCccc--------------cccccCCcCccC--------------CeeecCCCCCchhhHHH
Confidence               78999999999886543221              122468999999              56666666789999999


Q ss_pred             HHHHHHHHHhCCCCCccc
Q 039073          210 FGVVALKVLMGTHPGELL  227 (257)
Q Consensus       210 lG~~l~ell~G~~Pf~~~  227 (257)
                      +|+++|+|++|+.||.+.
T Consensus       219 lG~il~~ll~g~~pf~~~  236 (327)
T 3lm5_A          219 IGIIAYMLLTHTSPFVGE  236 (327)
T ss_dssp             HHHHHHHHHHSSCSSCCS
T ss_pred             HHHHHHHHHhCCCCCCCC
Confidence            999999999999999754

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.94  E-value=1.2e-26  Score=199.90  Aligned_cols=144  Identities=20%  Similarity=0.363  Sum_probs=115.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++.....      +.+.+|+.+                         
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~  108 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK------KKIKREIKILENLRGGPNIITLADIVKDPVSRTP  108 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCH------HHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccch------HHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence            47899999999999999999965 5799999999975332      233344433                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~~  151 (257)
                                                +..|++.||.|||++   +++||||||+||+++.++ .++|+|||++.......
T Consensus       109 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~  185 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ  185 (330)
T ss_dssp             EEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred             EEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC
Confidence                                      445899999999999   999999999999999777 79999999997654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ..              ....|+..|+|||+              ..+ ..++.++||||+||++|+|++|+.||.
T Consensus       186 ~~--------------~~~~~~~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~~ll~g~~p~~  232 (330)
T 3nsz_A          186 EY--------------NVRVASRYFKGPEL--------------LVDYQMYDYSLDMWSLGCMLASMIFRKEPFF  232 (330)
T ss_dssp             CC--------------CSCCSCGGGCCHHH--------------HTTCCCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             cc--------------ccccccccccChhh--------------hcCCCcCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            11              22467889999554              443 346889999999999999999999994

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.94  E-value=1.3e-26  Score=203.12  Aligned_cols=164  Identities=24%  Similarity=0.332  Sum_probs=125.2

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccc-----cHHHHHHHHHHHHH--------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETE-----DSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~~~~e~~~--------------   98 (257)
                      .......++|++.+.||.|+||.||+|... +|+.||||++......     .....+.+.+|+.+              
T Consensus        87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  166 (365)
T 2y7j_A           87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI  166 (365)
T ss_dssp             HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            344555688999999999999999999765 7999999998754321     11223445555554              


Q ss_pred             --------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           99 --------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        99 --------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                            +..|++.||.|||+.   +++|+||||+||+++.++.++|+|
T Consensus       167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~D  243 (365)
T 2y7j_A          167 DSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSD  243 (365)
T ss_dssp             EEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred             EEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEe
Confidence                                                  334899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||++........              .....||+.|+|||++.+....        ....++.++|||||||++|+|++|
T Consensus       244 fG~~~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~--------~~~~~~~~~Di~slG~il~ell~g  301 (365)
T 2y7j_A          244 FGFSCHLEPGEK--------------LRELCGTPGYLAPEILKCSMDE--------THPGYGKEVDLWACGVILFTLLAG  301 (365)
T ss_dssp             CTTCEECCTTCC--------------BCCCCSCGGGCCHHHHHHTTCT--------TSCCBCTTHHHHHHHHHHHHHHHS
T ss_pred             cCcccccCCCcc--------------cccCCCCCCccChhhccccccc--------cCcCCCchhhHHhHHHHHHHHHHC
Confidence            999876543221              1235689999997776543210        122368899999999999999999


Q ss_pred             CCCCccc
Q 039073          221 THPGELL  227 (257)
Q Consensus       221 ~~Pf~~~  227 (257)
                      +.||...
T Consensus       302 ~~pf~~~  308 (365)
T 2y7j_A          302 SPPFWHR  308 (365)
T ss_dssp             SCSSCCS
T ss_pred             CCCCCCC
Confidence            9999753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=4.2e-27  Score=204.64  Aligned_cols=159  Identities=23%  Similarity=0.324  Sum_probs=113.5

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCcccccc--HHHHHHHHHHHHH-------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETED--SAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~-------------------   98 (257)
                      +....++|++.+.||+|+||.||+|... +|+.||||++.......  ....+.+.+|+.+                   
T Consensus         5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   84 (346)
T 1ua2_A            5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK   84 (346)
T ss_dssp             --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred             hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC
Confidence            3445688999999999999999999764 68999999997543221  1112244455554                   


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      +..|++.||.|||++   +++||||||+||+++.++.++|+|||++..
T Consensus        85 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (346)
T 1ua2_A           85 SNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKS  161 (346)
T ss_dssp             TCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             CceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence                                            344899999999999   999999999999999999999999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......             .....||+.|+|||++...             ..++.++|+||+||++|+|++|.+||.+
T Consensus       162 ~~~~~~~-------------~~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~ell~g~~~~~~  215 (346)
T 1ua2_A          162 FGSPNRA-------------YTHQVVTRWYRAPELLFGA-------------RMYGVGVDMWAVGCILAELLLRVPFLPG  215 (346)
T ss_dssp             TTSCCCC-------------CCCSCCCCTTCCHHHHTTC-------------SCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccCCccc-------------CCcccccccccCchHhhCC-------------CCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            5432211             1224678999995554322             2357899999999999999999999976


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      .+
T Consensus       216 ~~  217 (346)
T 1ua2_A          216 DS  217 (346)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.94  E-value=6.5e-27  Score=196.99  Aligned_cols=155  Identities=26%  Similarity=0.410  Sum_probs=122.6

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ++....++|++.+.||+|+||.||+|...+++.||+|++.......    +.+.+|+.+                     
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   82 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP----DAFLAEANLMKQLQHQRLVRLYAVVTQEPI   82 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSC
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccH----HHHHHHHHHHHhCCCcCcceEEEEEcCCCc
Confidence            4556678999999999999999999988888889999997654332    334445444                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++...
T Consensus        83 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  159 (279)
T 1qpc_A           83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLI  159 (279)
T ss_dssp             EEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccc
Confidence                                           344899999999999   9999999999999999999999999998865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .......            .....++..|+|              ||...+..++.++|+||||+++|+|++ |+.||.+
T Consensus       160 ~~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~  213 (279)
T 1qpc_A          160 EDNEYTA------------REGAKFPIKWTA--------------PEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG  213 (279)
T ss_dssp             SSSCEEC------------CTTCCCCTTTSC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             cCccccc------------ccCCCCccCccC--------------hhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcc
Confidence            4322110            112345778999              555555556889999999999999999 9999976


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       214 ~  214 (279)
T 1qpc_A          214 M  214 (279)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=198.75  Aligned_cols=155  Identities=28%  Similarity=0.492  Sum_probs=105.7

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||+|++...........+.+.+|+.+                       
T Consensus         8 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   87 (278)
T 3cok_A            8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVY   87 (278)
T ss_dssp             SSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEE
T ss_pred             cccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEE
Confidence            3467899999999999999999976 5799999999865322211123445555544                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~  164 (278)
T 3cok_A           88 LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKM  164 (278)
T ss_dssp             EEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence                                         445899999999999   999999999999999999999999999876543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             .....|++.|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       165 ~~~~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  215 (278)
T 3cok_A          165 PHEK-------------HYTLCGTPNYIS--------------PEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD  215 (278)
T ss_dssp             ------------------------------------------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             CCCc-------------ceeccCCCCcCC--------------cchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence            2211             112457889999              55555556788999999999999999999999854

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.94  E-value=3.8e-27  Score=203.49  Aligned_cols=147  Identities=25%  Similarity=0.385  Sum_probs=98.7

Q ss_pred             cccccc---eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIK---YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        46 ~~~~~~---~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ++|++.   +.||+|+||.||+|.. .+++.||||++.....      ..+.+|+..                       
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~   81 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRME------ANTQKEITALKLCEGHPNIVKLHEVFHDQLHT   81 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGH------HHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhhh------hhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEE
Confidence            445554   8899999999999966 4789999999865321      222333332                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeeccCccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADFGTARL  146 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~dfg~~~~  146 (257)
                                                   +..|++.||.|||++   +++||||||+||+++.++   .++|+|||++..
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           82 FLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             EEEECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EEEEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence                                         455899999999999   999999999999998665   799999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .......             .....||+.|+|              ||...+..++.++||||+||++|+|++|+.||.+
T Consensus       159 ~~~~~~~-------------~~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  211 (325)
T 3kn6_A          159 KPPDNQP-------------LKTPCFTLHYAA--------------PELLNQNGYDESCDLWSLGVILYTMLSGQVPFQS  211 (325)
T ss_dssp             CCC-------------------------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred             cCCCCCc-------------ccccCCCcCccC--------------HHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence            5432211             123467899999              5666666678899999999999999999999986


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      ..
T Consensus       212 ~~  213 (325)
T 3kn6_A          212 HD  213 (325)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.9e-27  Score=206.68  Aligned_cols=154  Identities=27%  Similarity=0.382  Sum_probs=117.7

Q ss_pred             hccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      ..++|++.+.||+|+||+||+|..      .+++.||||++......  .....+.+|+.+                   
T Consensus        69 ~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~  146 (367)
T 3l9p_A           69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE--QDELDFLMEALIISKFNHQNIVRCIGVSLQS  146 (367)
T ss_dssp             CGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCH--HHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccCh--hhHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            357899999999999999999973      24678999999753222  223345555554                   


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---Ce
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EA  136 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~  136 (257)
                                                             ++.|++.||.|||++   +++||||||+||+++.++   .+
T Consensus       147 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~  223 (367)
T 3l9p_A          147 LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVA  223 (367)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCE
T ss_pred             CCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceE
Confidence                                                   344899999999999   999999999999999555   59


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++..........           ......||+.|+|              ||.+.+..++.++|||||||++||
T Consensus       224 kL~DFG~a~~~~~~~~~~-----------~~~~~~~t~~y~a--------------PE~~~~~~~~~~~DvwslG~il~e  278 (367)
T 3l9p_A          224 KIGDFGMARDIYRAGYYR-----------KGGCAMLPVKWMP--------------PEAFMEGIFTSKTDTWSFGVLLWE  278 (367)
T ss_dssp             EECCCHHHHHHHHHSSCT-----------TCCGGGSCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             EECCCccccccccccccc-----------cCCCcCCcccEEC--------------HHHhcCCCCCcHHHHHHHHHHHHH
Confidence            999999987553222111           0123457889999              555666667899999999999999


Q ss_pred             HHh-CCCCCccc
Q 039073          217 VLM-GTHPGELL  227 (257)
Q Consensus       217 ll~-G~~Pf~~~  227 (257)
                      |++ |..||.+.
T Consensus       279 llt~g~~pf~~~  290 (367)
T 3l9p_A          279 IFSLGYMPYPSK  290 (367)
T ss_dssp             HHTTSCCSSTTC
T ss_pred             HHhCCCCCCCCC
Confidence            998 99999864

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.94  E-value=9e-27  Score=195.17  Aligned_cols=155  Identities=31%  Similarity=0.518  Sum_probs=111.4

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCcccccc-HHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETED-SAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... ++.||||++....... ....+.+.+|+.+                        
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A            5 DFAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL   83 (271)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE
T ss_pred             chhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            3578999999999999999999874 7889999987643222 2223455566555                        


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC--------CCCeEEeeccCc
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS--------NLEAFVADFGTA  144 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~--------~~~~~l~dfg~~  144 (257)
                                                ++.|++.|+.|||++...+++|+||||+||+++.        ++.++|+|||.+
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           84 VMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             EEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             EEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence                                      3448999999999992222999999999999986        678999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ........               ....|++.|+|              ||...+..++.++|+||+|+++|+|++|+.||
T Consensus       164 ~~~~~~~~---------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  214 (271)
T 3dtc_A          164 REWHRTTK---------------MSAAGAYAWMA--------------PEVIRASMFSKGSDVWSYGVLLWELLTGEVPF  214 (271)
T ss_dssp             ---------------------------CCGGGSC--------------HHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             cccccccc---------------cCCCCccceeC--------------HHHhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            75532211               12458899999              55555666788999999999999999999999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      .+..
T Consensus       215 ~~~~  218 (271)
T 3dtc_A          215 RGID  218 (271)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8643

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.94  E-value=7.6e-27  Score=211.79  Aligned_cols=160  Identities=21%  Similarity=0.379  Sum_probs=121.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHH--H----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSF--Q----------------------------   93 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~--~----------------------------   93 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++........ ...+.  .                            
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~-~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~   84 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQ-LLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL   84 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCC-HHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHH-HHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence            57899999999999999999965 5799999998764332211 01100  0                            


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCccccccCCC
Q 039073           94 ------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        94 ------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                        .++..++.||+.||.|||++   +|+||||||+||++   +.++.++|+|||++........
T Consensus        85 ~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~  161 (483)
T 3sv0_A           85 LGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTST  161 (483)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             CCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcc
Confidence                              12233566999999999999   99999999999999   6889999999999987654332


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....      .........||..|+|              ||.+.+..++.++|||||||++|||++|+.||.+..
T Consensus       162 ~~~~------~~~~~~~~~gt~~Y~a--------------PE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~  217 (483)
T 3sv0_A          162 HQHI------PYRENKNLTGTARYAS--------------VNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLK  217 (483)
T ss_dssp             CCBC------CCCCCCCCCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             cccc------ccccccccCCCccccC--------------HHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            2111      0111234678999999              666666678899999999999999999999998753

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=203.07  Aligned_cols=158  Identities=25%  Similarity=0.350  Sum_probs=121.2

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe--------CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL--------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------   98 (257)
                      .+....++|.+.+.||+|+||.||+|..        ..+..||||++.....  ....+.+.+|+++             
T Consensus        63 ~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpnIv~~  140 (382)
T 3tt0_A           63 RWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT--EKDLSDLISEMEMMKMIGKHKNIINL  140 (382)
T ss_dssp             TTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccC--HHHHHHHHHHHHHHHHhcCCchhhhh
Confidence            3455668999999999999999999964        2245799999976432  2223444444443             


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCC
Q 039073           99 -------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDI  123 (257)
Q Consensus        99 -------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dL  123 (257)
                                                                             ++.|++.||.|||+.   +++||||
T Consensus       141 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dl  217 (382)
T 3tt0_A          141 LGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDL  217 (382)
T ss_dssp             EEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred             eeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCC
Confidence                                                                   344899999999999   9999999


Q ss_pred             CCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCC
Q 039073          124 SSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTE  203 (257)
Q Consensus       124 kp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~  203 (257)
                      ||+||+++.++.++|+|||++...........           .....+|..|+|              ||...+..++.
T Consensus       218 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~-----------~~~~~~t~~y~a--------------PE~~~~~~~~~  272 (382)
T 3tt0_A          218 AARNVLVTEDNVMKIADFGLARDIHHIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRIYTH  272 (382)
T ss_dssp             CGGGEEECTTCCEEECSCSCCCCSSCCCTTCC-----------CTTCCCGGGGSC--------------HHHHHSCCCCH
T ss_pred             CcceEEEcCCCcEEEcccCccccccccccccc-----------ccCCCCCcceeC--------------HHHhcCCCCCc
Confidence            99999999999999999999886543221111           122456788999              55556666788


Q ss_pred             ccchhhHHHHHHHHHh-CCCCCccc
Q 039073          204 KCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       204 ~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ++|||||||++|+|++ |..||.+.
T Consensus       273 ~~DiwslG~il~ellt~g~~p~~~~  297 (382)
T 3tt0_A          273 QSDVWSFGVLLWEIFTLGGSPYPGV  297 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999 99999864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.94  E-value=9.9e-27  Score=204.30  Aligned_cols=151  Identities=26%  Similarity=0.368  Sum_probs=118.4

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|.+.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+                        
T Consensus        40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  118 (371)
T 4exu_A           40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN  118 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTT
T ss_pred             ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc-chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccc
Confidence            457899999999999999999965 4789999999976432 23334555666555                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       119 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          119 FYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             CCCCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             ceeEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence                                          344899999999999   99999999999999999999999999987543


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...                ....||+.|+|||+              +.+ ..++.++|+||+||++|+|++|+.||.+.
T Consensus       196 ~~~----------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  245 (371)
T 4exu_A          196 AEM----------------TGYVVTRWYRAPEV--------------ILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  245 (371)
T ss_dssp             --------------------CTTCCCTTSCHHH--------------HSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCc----------------CCcccCccccCHHH--------------hcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            221                22457889999554              444 44688999999999999999999999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       246 ~  246 (371)
T 4exu_A          246 D  246 (371)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.94  E-value=1.7e-27  Score=205.28  Aligned_cols=155  Identities=21%  Similarity=0.352  Sum_probs=112.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCcccccc--------HHH---------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETED--------SAF---------------------------   88 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~--------~~~---------------------------   88 (257)
                      .++|++.+.||+|+||.||+|... +++.||+|++.......        ...                           
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   80 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence            368999999999999999999765 78999999886432110        000                           


Q ss_pred             -----HHHH---------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           89 -----VKSF---------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        89 -----~~~~---------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                           ...+         ..++..+..|++.||.|||+.   +++||||||+||+++.++.++|+|||++......... 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-  156 (324)
T 3mtl_A           81 YLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT-  156 (324)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred             ccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCccc-
Confidence                 0000         123444677999999999999   9999999999999999999999999998754322111 


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                  .....||..|+|||++...             ..++.++||||+||++|+|++|+.||.+.+
T Consensus       157 ------------~~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (324)
T 3mtl_A          157 ------------YDNEVVTLWYRPPDILLGS-------------TDYSTQIDMWGVGCIFYEMATGRPLFPGST  205 (324)
T ss_dssp             ------------------CGGGCCHHHHTTC-------------CCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ------------cccccCcccccChhhhcCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                        1234678999995544322             346889999999999999999999998643

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.94  E-value=9.8e-27  Score=200.14  Aligned_cols=152  Identities=22%  Similarity=0.318  Sum_probs=120.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccH---HHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDS---AFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~---~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||+|++........   ...+.+.+|+.+                      
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            567999999999999999999664 699999999976432211   012445555554                      


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC----CeEEeeccCcc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL----EAFVADFGTAR  145 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~----~~~l~dfg~~~  145 (257)
                                                   +..|++.||.|||++   +++|+||||+||+++.++    .++|+|||++.
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence                                         344899999999999   999999999999999887    79999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........              ....||+.|+|              ||...+..++.++|+||+|+++|+|++|+.||.
T Consensus       168 ~~~~~~~~--------------~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  219 (321)
T 2a2a_A          168 EIEDGVEF--------------KNIFGTPEFVA--------------PEIVNYEPLGLEADMWSIGVITYILLSGASPFL  219 (321)
T ss_dssp             ECCTTCCC--------------CCCCSCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ecCccccc--------------cccCCCCCccC--------------cccccCCCCCCccccHHHHHHHHHHHHCCCCCC
Confidence            65432211              22458999999              555566667899999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       220 ~~  221 (321)
T 2a2a_A          220 GD  221 (321)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.94  E-value=1.2e-26  Score=204.22  Aligned_cols=148  Identities=26%  Similarity=0.396  Sum_probs=116.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++.....    ..+.+.+|+.+                         
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~  111 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEH----YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK  111 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH----HHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCc----chHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence            57899999999999999999965 5688999999975321    12223333322                         


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-----
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-----  134 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-----  134 (257)
                                                             +..|++.||.|||+++  +++||||||+||+++.++     
T Consensus       112 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~  189 (397)
T 1wak_A          112 ISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRR  189 (397)
T ss_dssp             EEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHH
T ss_pred             ecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhh
Confidence                                                   4458999999999842  899999999999998775     


Q ss_pred             --------------------------------------------CeEEeeccCccccccCCCCCCccccccCCCcccccc
Q 039073          135 --------------------------------------------EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI  170 (257)
Q Consensus       135 --------------------------------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (257)
                                                                  .++|+|||++.......                ...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~----------------~~~  253 (397)
T 1wak_A          190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF----------------TED  253 (397)
T ss_dssp             HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS----------------CSC
T ss_pred             hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC----------------ccC
Confidence                                                        79999999987653221                224


Q ss_pred             cccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       171 ~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .||..|+|              ||.+.+..++.++|||||||++|+|++|+.||...+
T Consensus       254 ~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  297 (397)
T 1wak_A          254 IQTRQYRS--------------LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHS  297 (397)
T ss_dssp             CSCGGGCC--------------HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCC
T ss_pred             CCCCcccC--------------ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence            68999999              555666667899999999999999999999998643

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.1e-26  Score=198.89  Aligned_cols=155  Identities=27%  Similarity=0.441  Sum_probs=115.9

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+..                        
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            3688999999999999999999764 788999999987655555555666666665                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  188 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEK  188 (309)
T ss_dssp             EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred             EEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence                                       344899999999999   99999999999999999999999999987654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...            .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||.+.
T Consensus       189 ~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  238 (309)
T 2h34_A          189 LTQ------------LGNTVGTLYYMA--------------PERFSESHATYRADIYALTCVLYECLTGSPPYQGD  238 (309)
T ss_dssp             --------------------CCGGGCC--------------GGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred             ccc------------ccccCCCcCccC--------------HHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence            110            123468889999              56566666788999999999999999999999854

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.94  E-value=9.9e-27  Score=206.45  Aligned_cols=152  Identities=26%  Similarity=0.350  Sum_probs=111.4

Q ss_pred             ccccccc-eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHH------------------------------
Q 039073           45 TEEFHIK-YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSF------------------------------   92 (257)
Q Consensus        45 ~~~~~~~-~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~------------------------------   92 (257)
                      .++|.+. +.||.|+||+||+|.. .+++.||||++........+ +...                              
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E-~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~  138 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARRE-VELHWRASQCPHIVRIVDVYENLYAGRKCLLIVM  138 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHH-HHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHH-HHHHHHhcCCCCcceEeEEEeecccCCcEEEEEE
Confidence            4667776 7899999999999965 47999999998632111000 0000                              


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeeccCccccc
Q 039073           93 ---------------------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADFGTARLLH  148 (257)
Q Consensus        93 ---------------------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~dfg~~~~~~  148 (257)
                                           ..++..+..|++.||.|||++   +|+||||||+||+++.   ++.++|+|||++....
T Consensus       139 E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          139 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             ECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence                                 012223556899999999999   9999999999999997   7889999999988653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              ....+||+.|+|              ||++.+..++.++|||||||++|+|++|+.||.+..
T Consensus       216 ~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  267 (400)
T 1nxk_A          216 SHNS--------------LTTPCYTPYYVA--------------PEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  267 (400)
T ss_dssp             -------------------------CTTCC--------------GGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred             CCCc--------------cccCCCCCCccC--------------HhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence            2211              123568999999              666666678999999999999999999999997643

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.94  E-value=4.9e-27  Score=204.57  Aligned_cols=164  Identities=24%  Similarity=0.360  Sum_probs=126.1

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------   98 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------   98 (257)
                      ..++...+....++|++.+.||+|+||.||+|.+      .+++.||||++......  ...+.+.+|+.+         
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hpn   87 (359)
T 3vhe_A           10 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLN   87 (359)
T ss_dssp             SCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCH--HHHHHHHHHHHHHHhhcCCcc
Confidence            3456678888899999999999999999999962      35678999999754322  112334444332         


Q ss_pred             --------------------------------------------------------------------------------
Q 039073           99 --------------------------------------------------------------------------------   98 (257)
Q Consensus        99 --------------------------------------------------------------------------------   98 (257)
                                                                                                      
T Consensus        88 iv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (359)
T 3vhe_A           88 VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF  167 (359)
T ss_dssp             BCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred             eeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  244 (359)
T 3vhe_A          168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY  244 (359)
T ss_dssp             ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred             ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence                                          234789999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......           ......||..|+|              ||...+..++.++||||||+++|||++ |+.||.+.
T Consensus       245 ~~~~~~-----------~~~~~~~t~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  299 (359)
T 3vhe_A          245 KDPDYV-----------RKGDARLPLKWMA--------------PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  299 (359)
T ss_dssp             SCTTCE-----------EC--CEECGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ccccch-----------hccccCCCceeEC--------------hhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCcc
Confidence            322110           0123467889999              555556667889999999999999998 99999864

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.94  E-value=6.2e-27  Score=205.92  Aligned_cols=154  Identities=29%  Similarity=0.404  Sum_probs=110.0

Q ss_pred             ccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|...    ++..||||+++...  .....+.+.+|+.+                      
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  121 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV  121 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence            468999999999999999999653    57789999997643  23334567777665                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  198 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE  198 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence                                          344899999999999   99999999999999999999999999988664


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ........          .....++..|+|              ||...+..++.++||||||+++||+++ |+.||...
T Consensus       199 ~~~~~~~~----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~  254 (373)
T 2qol_A          199 DDPEAAYT----------TRGGKIPIRWTS--------------PEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM  254 (373)
T ss_dssp             -------------------------CTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred             cCCcccee----------ccCCCcCCCccC--------------hhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence            32211100          112235678999              566666667889999999999999998 99999754

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.94  E-value=6.3e-27  Score=197.45  Aligned_cols=155  Identities=23%  Similarity=0.359  Sum_probs=119.9

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .+....++|++.+.||+|+||.||++...++..||+|++.......    +.+.+|+.+                     
T Consensus        18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   93 (283)
T 3gen_A           18 SWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE----DEFIEEAKVMMNLSHEKLVQLYGVCTKQRP   93 (283)
T ss_dssp             TTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             CccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCH----HHHHHHHHHHhcCCCCCEeeEEEEEecCCC
Confidence            4455678999999999999999999988888899999998654433    234445444                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++...
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  170 (283)
T 3gen_A           94 IFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYV  170 (283)
T ss_dssp             EEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGB
T ss_pred             eEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccc
Confidence                                           445899999999999   9999999999999999999999999998755


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .......            .....++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||..
T Consensus       171 ~~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~  224 (283)
T 3gen_A          171 LDDEYTS------------SVGSKFPVRWSP--------------PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER  224 (283)
T ss_dssp             CCHHHHS------------TTSTTSCGGGCC--------------HHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             ccccccc------------ccCCccCcccCC--------------HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            3221000            112345778999              555555567889999999999999998 9999985


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       225 ~  225 (283)
T 3gen_A          225 F  225 (283)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.94  E-value=1.1e-26  Score=205.67  Aligned_cols=155  Identities=26%  Similarity=0.333  Sum_probs=116.9

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHH---------------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK---------------------------------   90 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~---------------------------------   90 (257)
                      ...+|++.+.||+|+||.||+|....+..||+|++...........+                                 
T Consensus        38 ~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~  117 (394)
T 4e7w_A           38 REIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL  117 (394)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred             ccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence            45679999999999999999998876666899887543211110000                                 


Q ss_pred             ---------HH-----------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-CCCCeEEeeccCcccccc
Q 039073           91 ---------SF-----------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-SNLEAFVADFGTARLLHV  149 (257)
Q Consensus        91 ---------~~-----------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-~~~~~~l~dfg~~~~~~~  149 (257)
                               ..           ..++..++.|++.||.|||++   +++||||||+||+++ .++.++|+|||++.....
T Consensus       118 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~  194 (394)
T 4e7w_A          118 EYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA  194 (394)
T ss_dssp             ECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             eccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC
Confidence                     00           012344677999999999999   999999999999999 789999999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              ....||+.|+|||++.+.             ..++.++||||+||++|||++|+.||.+.+
T Consensus       195 ~~~~--------------~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwSlG~il~ell~g~~pf~~~~  246 (394)
T 4e7w_A          195 GEPN--------------VSYICSRYYRAPELIFGA-------------TNYTTNIDIWSTGCVMAELMQGQPLFPGES  246 (394)
T ss_dssp             TCCC--------------CSSCSCGGGCCHHHHTTC-------------SSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCCC--------------cccccCcCccCHHHHcCC-------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            3221              124578899995544322             236889999999999999999999998654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.94  E-value=6.6e-27  Score=212.99  Aligned_cols=157  Identities=29%  Similarity=0.432  Sum_probs=123.9

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------   98 (257)
                      ++.+....++|++.+.||+|+||.||+|.+. ++..||||+++.....    .+.+.+|+.+                  
T Consensus       212 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~  287 (495)
T 1opk_A          212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTR  287 (495)
T ss_dssp             SSCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc----hHHHHHHHHHHHhcCCCCEeeEEEEEec
Confidence            3455566788999999999999999999765 5889999999865433    3445566555                  


Q ss_pred             -----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 -----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 -----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                         ++.|++.||.|||++   +++||||||+||+++.++.++|+|||+
T Consensus       288 ~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~  364 (495)
T 1opk_A          288 EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGL  364 (495)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTC
T ss_pred             CCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeeccc
Confidence                                               334899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTH  222 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~  222 (257)
                      +..........            .....++..|+|              ||.+.+..++.++|||||||++|||++ |..
T Consensus       365 a~~~~~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~sDvwSlG~~l~el~t~g~~  418 (495)
T 1opk_A          365 SRLMTGDTYTA------------HAGAKFPIKWTA--------------PESLAYNKFSIKSDVWAFGVLLWEIATYGMS  418 (495)
T ss_dssp             EECCTTCCEEC------------CTTCCCCGGGCC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ceeccCCceee------------cCCCcCCcceeC--------------HhHHhcCCCCcHHhHHhHHHHHHHHHhCCCC
Confidence            98653221100            112345678999              555555557889999999999999999 999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||.+.
T Consensus       419 p~~~~  423 (495)
T 1opk_A          419 PYPGI  423 (495)
T ss_dssp             SSTTC
T ss_pred             CCCCC
Confidence            99864

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.94  E-value=4.2e-27  Score=202.87  Aligned_cols=153  Identities=27%  Similarity=0.427  Sum_probs=113.5

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCE----EEEEEcCccccccHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKV----VALKKLHQSETEDSAFVKSFQN-------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~----vaiK~~~~~~~~~~~~~~~~~~-------------------------   94 (257)
                      .++|++.+.||+|+||.||+|.+ .+++.    ||+|.+........  .+.+.+                         
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~--~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   89 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQS--FQAVTDHMLAIGSLDHAHIVRLLGLCPGSSL   89 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSC--BCSCCHHHHHHHTCCCTTBCCEEEEECBSSE
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHH--HHHHHHHHHHHhcCCCCCcCeEEEEEcCCcc
Confidence            46799999999999999999965 34543    78887743321100  001111                         


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           95 --------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        95 --------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                ++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus        90 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  166 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP  166 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred             EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence                                      2233566999999999999   99999999999999999999999999998764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......           .....|+..|+|              ||.+.+..++.++|+||||+++|+|++ |+.||.+.
T Consensus       167 ~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  221 (325)
T 3kex_A          167 PDDKQLL-----------YSEAKTPIKWMA--------------LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGL  221 (325)
T ss_dssp             CCTTCCC----------------CCTTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             ccccccc-----------ccCCCCcccccC--------------hHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcccc
Confidence            3322111           123456778999              566666667899999999999999999 99999864

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.94  E-value=8.9e-27  Score=205.94  Aligned_cols=150  Identities=24%  Similarity=0.313  Sum_probs=119.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++......   ....+.+|+.+                         
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchh---hHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            57899999999999999999965 47899999998654321   13345566655                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC--CCCeEEeeccCcccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS--NLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~--~~~~~l~dfg~~~~~~~  149 (257)
                                                 +..|++.||.|||++   +++||||||+||+++.  .+.++|+|||++.....
T Consensus       127 ~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~  203 (387)
T 1kob_A          127 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  203 (387)
T ss_dssp             EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             EEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence                                       345899999999999   9999999999999974  46799999999886543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...              .....||+.|+|              ||.+.+..++.++||||+||++|+|++|+.||.+.+
T Consensus       204 ~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~  254 (387)
T 1kob_A          204 DEI--------------VKVTTATAEFAA--------------PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED  254 (387)
T ss_dssp             TSC--------------EEEECSSGGGCC--------------HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             Ccc--------------eeeeccCCCccC--------------chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC
Confidence            211              123468999999              555555667889999999999999999999998643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.94  E-value=6.2e-27  Score=197.71  Aligned_cols=152  Identities=28%  Similarity=0.446  Sum_probs=119.1

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++...........+.+.+|+.+                        
T Consensus        12 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   91 (284)
T 2vgo_A           12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYL   91 (284)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEE
Confidence            3578999999999999999999665 688899999865322111112344445444                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  168 (284)
T 2vgo_A           92 MLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR  168 (284)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred             EEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence                                       445899999999999   99999999999999999999999999986543211


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .               ....|+..|+|              ||...+..++.++|+||+|+++|+|++|+.||+..
T Consensus       169 ~---------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  215 (284)
T 2vgo_A          169 R---------------RTMCGTLDYLP--------------PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP  215 (284)
T ss_dssp             B---------------CCCCSCGGGCC--------------HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             c---------------ccccCCCCcCC--------------HHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence            1               22468899999              55555566788999999999999999999999854

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.94  E-value=9.5e-27  Score=202.85  Aligned_cols=160  Identities=23%  Similarity=0.299  Sum_probs=111.7

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH-----------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ-----------------------   93 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~-----------------------   93 (257)
                      -.......++|++.+.||+|+||.||+|.. .+|+.||||++...........+.+.                       
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            355677789999999999999999999976 47899999988654322221111111                       


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHh--hCCCCCeEeeCCCCCCeEEcC-CCCe
Q 039073           94 ----------------------------------NEAHVLSTSVAHALSYLH--HDCTLSIVHRDISSNNILLDS-NLEA  136 (257)
Q Consensus        94 ----------------------------------~e~~~l~~~i~~~l~~LH--~~~~~~i~H~dLkp~nill~~-~~~~  136 (257)
                                                        .++..+..|++.|+.|||  ++   +++||||||+||+++. ++.+
T Consensus        95 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~  171 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTL  171 (360)
T ss_dssp             CTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEE
T ss_pred             cccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcE
Confidence                                              012235568999999999  77   9999999999999996 8899


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVAL  215 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~  215 (257)
                      +|+|||++.........              ....||+.|+|||++              .+. .++.++|||||||++|
T Consensus       172 kl~Dfg~a~~~~~~~~~--------------~~~~gt~~y~aPE~~--------------~~~~~~~~~~Di~slG~il~  223 (360)
T 3e3p_A          172 KLCDFGSAKKLSPSEPN--------------VAYICSRYYRAPELI--------------FGNQHYTTAVDIWSVGCIFA  223 (360)
T ss_dssp             EECCCTTCBCCCTTSCC--------------CSTTSCGGGCCHHHH--------------TTCSSCCTHHHHHHHHHHHH
T ss_pred             EEeeCCCceecCCCCCc--------------ccccCCcceeCHHHH--------------cCCCCCCcHHHHHHHHHHHH
Confidence            99999999865433221              124578999995544              332 2688999999999999


Q ss_pred             HHHhCCCCCcccc
Q 039073          216 KVLMGTHPGELLS  228 (257)
Q Consensus       216 ell~G~~Pf~~~~  228 (257)
                      +|++|+.||.+.+
T Consensus       224 ell~g~~pf~~~~  236 (360)
T 3e3p_A          224 EMMLGEPIFRGDN  236 (360)
T ss_dssp             HHHHSSCSSCCSS
T ss_pred             HHHhCCCCcCCCC
Confidence            9999999998643

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.94  E-value=1.9e-26  Score=198.62  Aligned_cols=146  Identities=23%  Similarity=0.444  Sum_probs=116.3

Q ss_pred             ccccccceeeeecCceeEEEEEe--CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL--PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .++|++.+.||+|+||.||+|..  .+++.||||++.....    ..+.+.+|+.+                        
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDR----YCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHH----HHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCc----hhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            56899999999999999999965  3688999999975321    12233333332                        


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC------------
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS------------  132 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~------------  132 (257)
                                                        +..|++.||.|||++   +++||||||+||+++.            
T Consensus        89 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~  165 (339)
T 1z57_A           89 HGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIK  165 (339)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccc
Confidence                                              445899999999999   9999999999999987            


Q ss_pred             -------CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          133 -------NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       133 -------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                             ++.++|+|||++.......                ....||+.|+|              ||...+..++.++
T Consensus       166 ~~~~~~~~~~~kl~Dfg~~~~~~~~~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~  215 (339)
T 1z57_A          166 RDERTLINPDIKVVDFGSATYDDEHH----------------STLVSTRHYRA--------------PEVILALGWSQPC  215 (339)
T ss_dssp             CEEEEESCCCEEECCCSSCEETTSCC----------------CSSCSCGGGCC--------------HHHHTTSCCCTHH
T ss_pred             cccccccCCCceEeeCcccccCcccc----------------ccccCCccccC--------------hHHhhCCCCCcch
Confidence                   6689999999987543211                12468899999              5556666679999


Q ss_pred             chhhHHHHHHHHHhCCCCCccc
Q 039073          206 DVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       206 DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      |+||+||++|||++|+.||...
T Consensus       216 Di~slG~il~el~~g~~pf~~~  237 (339)
T 1z57_A          216 DVWSIGCILIEYYLGFTVFPTH  237 (339)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hhHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999854

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.94  E-value=5.4e-27  Score=205.40  Aligned_cols=151  Identities=26%  Similarity=0.362  Sum_probs=109.5

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||++... +++.||||++........    .+.+|+..                       
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~----~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   92 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDE----NVQREIINHRSLRHPNIVRFKEVILTPTHLA   92 (361)
T ss_dssp             CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCH----HHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccH----HHHHHHHHHHhCCCCCCCcEEEEEeeCCEEE
Confidence            34678999999999999999999665 799999999976543332    23333333                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC--eEEeeccCccccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE--AFVADFGTARLLH  148 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~--~~l~dfg~~~~~~  148 (257)
                                                  +..|++.||.|||++   +++||||||+||+++.++.  ++|+|||++....
T Consensus        93 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~  169 (361)
T 3uc3_A           93 IIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV  169 (361)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred             EEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence                                        455899999999999   9999999999999987765  9999999987432


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc-cchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK-CDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~-~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....              .....||+.|+||              |.+.+..++.+ +||||+||++|+|++|+.||.+.
T Consensus       170 ~~~~--------------~~~~~gt~~y~aP--------------E~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (361)
T 3uc3_A          170 LHSQ--------------PKSTVGTPAYIAP--------------EVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP  221 (361)
T ss_dssp             -------------------------CTTSCH--------------HHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred             ccCC--------------CCCCcCCCCcCCh--------------hhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence            2211              1234689999995              54544445444 89999999999999999999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       222 ~  222 (361)
T 3uc3_A          222 E  222 (361)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.94  E-value=1.3e-26  Score=197.88  Aligned_cols=159  Identities=25%  Similarity=0.360  Sum_probs=121.9

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      .++....++|++.+.||+|+||.||+|..      .+++.||+|++......  ...+.+.+|+.+              
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           16 HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhH--HHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            44556678999999999999999999963      35778999999754321  122344444433              


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeC
Q 039073           99 --------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRD  122 (257)
Q Consensus        99 --------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~d  122 (257)
                                                                              +..|++.||.|||++   +++|+|
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~d  170 (313)
T 1t46_A           94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRD  170 (313)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCC
Confidence                                                                    334799999999999   999999


Q ss_pred             CCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCC
Q 039073          123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVT  202 (257)
Q Consensus       123 Lkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~  202 (257)
                      |||+||+++.++.++|+|||++..........           ......++..|+|              ||...+..++
T Consensus       171 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~  225 (313)
T 1t46_A          171 LAARNILLTHGRITKICDFGLARDIKNDSNYV-----------VKGNARLPVKWMA--------------PESIFNCVYT  225 (313)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSE-----------ECSSSEECGGGCC--------------HHHHHHCCCC
T ss_pred             CccceEEEcCCCCEEEccccccccccccccce-----------eccCCCCcceeeC--------------hHHhcCCCCC
Confidence            99999999999999999999987654332110           0122456788999              5555556678


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCccc
Q 039073          203 EKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       203 ~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .++|+||||+++|+|++ |+.||.+.
T Consensus       226 ~~~Di~slG~il~ellt~g~~p~~~~  251 (313)
T 1t46_A          226 FESDVWSYGIFLWELFSLGSSPYPGM  251 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            89999999999999999 99999864

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.94  E-value=6.7e-27  Score=203.86  Aligned_cols=149  Identities=26%  Similarity=0.410  Sum_probs=107.9

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|... +++.||||++.....     .+.+.+|+.+                       
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  124 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVD-----KKIVRTEIGVLLRLSHPNIIKLKEIFETPTEIS  124 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchh-----HHHHHHHHHHHHhCCCCCCcceeeeEecCCeEE
Confidence            34678999999999999999999765 688999999875421     1223333333                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeeccCcccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADFGTARLL  147 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~dfg~~~~~  147 (257)
                                                  +..|++.||.|||+.   +++||||||+||+++.   ++.++|+|||++...
T Consensus       125 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~  201 (349)
T 2w4o_A          125 LVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV  201 (349)
T ss_dssp             EEECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-----
T ss_pred             EEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCcccccc
Confidence                                        455899999999999   9999999999999975   889999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....||+.|+|              ||...+..++.++|||||||++|+|++|+.||...
T Consensus       202 ~~~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  253 (349)
T 2w4o_A          202 EHQVL--------------MKTVCGTPGYCA--------------PEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDE  253 (349)
T ss_dssp             -------------------------CGGGSC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT
T ss_pred             Ccccc--------------cccccCCCCccC--------------HHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            32211              123468999999              55566666789999999999999999999999753

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.94  E-value=1.7e-26  Score=200.24  Aligned_cols=147  Identities=27%  Similarity=0.418  Sum_probs=116.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CC-CEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DG-KVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... ++ +.||+|+++.....    .+.+..|+.+                        
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKY----REAARLEINVLKKIKEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccc----hhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence            578999999999999999999654 44 68999999753211    2233333332                        


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE--------------
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL--------------  130 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill--------------  130 (257)
                                                        ++.|++.||.|||++   +++||||||+||++              
T Consensus        94 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~  170 (355)
T 2eu9_A           94 HGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKS  170 (355)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-C
T ss_pred             CCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccc
Confidence                                              445899999999999   99999999999999              


Q ss_pred             -----cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCcc
Q 039073          131 -----DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKC  205 (257)
Q Consensus       131 -----~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~  205 (257)
                           +.++.++|+|||++.......                ....||+.|+|              ||.+.+..++.++
T Consensus       171 ~~~~~~~~~~~kl~Dfg~~~~~~~~~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~  220 (355)
T 2eu9_A          171 CEEKSVKNTSIRVADFGSATFDHEHH----------------TTIVATRHYRP--------------PEVILELGWAQPC  220 (355)
T ss_dssp             CCEEEESCCCEEECCCTTCEETTSCC----------------CSSCSCGGGCC--------------HHHHTTCCCCTHH
T ss_pred             ccccccCCCcEEEeecCccccccccc----------------cCCcCCCcccC--------------CeeeecCCCCCcc
Confidence                 667899999999987543211                12468999999              5556666678999


Q ss_pred             chhhHHHHHHHHHhCCCCCcccc
Q 039073          206 DVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       206 DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      |+||+||++|||++|+.||....
T Consensus       221 Di~slG~il~el~~g~~pf~~~~  243 (355)
T 2eu9_A          221 DVWSIGCILFEYYRGFTLFQTHE  243 (355)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             chHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999998643

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.94  E-value=9.1e-27  Score=201.16  Aligned_cols=155  Identities=25%  Similarity=0.345  Sum_probs=117.9

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|... +|+.||+|++..... .....+.+.+|+.+                       
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  100 (331)
T 4aaa_A           22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD-DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWY  100 (331)
T ss_dssp             BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC-chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEE
Confidence            44678999999999999999999664 699999999865432 22334445566655                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++......
T Consensus       101 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             EEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             EEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence                                        334899999999999   9999999999999999999999999998765432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...             .....|+..|+|||+              ..+. .++.++|+||+||++|+|++|+.||.+..
T Consensus       178 ~~~-------------~~~~~~t~~y~aPE~--------------~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  229 (331)
T 4aaa_A          178 GEV-------------YDDEVATRWYRAPEL--------------LVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS  229 (331)
T ss_dssp             -------------------CCCCCTTCCHHH--------------HTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccc-------------cCCCcCCccccCccc--------------ccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            211             122467889999554              4433 46889999999999999999999998643

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.94  E-value=3.6e-27  Score=213.88  Aligned_cols=153  Identities=25%  Similarity=0.433  Sum_probs=120.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +|+.||||++.............+.+|+.+                        
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  103 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL  103 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            3568999999999999999999664 799999999865433222223455566554                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~~  148 (257)
                                                 +..|++.||.|||++   +++||||||+||++   +.++.++|+|||++....
T Consensus       104 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  180 (484)
T 3nyv_A          104 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE  180 (484)
T ss_dssp             EECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence                                       445899999999999   99999999999999   467889999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              .....||+.|+|||++              .+ .++.++||||+||++|+|++|++||.+.+
T Consensus       181 ~~~~--------------~~~~~gt~~y~aPE~~--------------~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~  231 (484)
T 3nyv_A          181 ASKK--------------MKDKIGTAYYIAPEVL--------------HG-TYDEKCDVWSTGVILYILLSGCPPFNGAN  231 (484)
T ss_dssp             CCCS--------------HHHHTTGGGTCCHHHH--------------HT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccc--------------cccCCCCccccCceee--------------cC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC
Confidence            2211              1235689999995544              33 36889999999999999999999998643

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.94  E-value=6e-27  Score=203.76  Aligned_cols=154  Identities=23%  Similarity=0.347  Sum_probs=116.4

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHH---------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQN---------------------------   94 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~---------------------------   94 (257)
                      ...++|++.+.||+|+||+||+|... +++.||||++..........++.+..                           
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   98 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELM   98 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCC
Confidence            34678999999999999999999654 78899999997654333222221111                           


Q ss_pred             ------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-C---CeEEeeccCccccccCCC
Q 039073           95 ------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-L---EAFVADFGTARLLHVDSS  152 (257)
Q Consensus        95 ------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~---~~~l~dfg~~~~~~~~~~  152 (257)
                                        ++..+..|++.||.|||++   +++||||||+||++... +   .++|+|||++........
T Consensus        99 ~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~  175 (342)
T 2qr7_A           99 KGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG  175 (342)
T ss_dssp             CSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC
Confidence                              2233566899999999999   99999999999998533 3   499999999986543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .             ....+||+.|+|||++              .+..++.++|+||+||++|+|++|+.||.+
T Consensus       176 ~-------------~~~~~gt~~y~aPE~~--------------~~~~~~~~~DiwslG~il~ell~g~~Pf~~  222 (342)
T 2qr7_A          176 L-------------LMTPCYTANFVAPEVL--------------ERQGYDAACDIWSLGVLLYTMLTGYTPFAN  222 (342)
T ss_dssp             C-------------BCCSSCCSSCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             c-------------eeccCCCccccCHHHh--------------cCCCCCCccCeeeHhHHHHHHhcCCCCCCC
Confidence            1             1224689999995554              444457799999999999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.94  E-value=5.5e-27  Score=200.81  Aligned_cols=175  Identities=19%  Similarity=0.301  Sum_probs=122.3

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      ..++++.+....++|++.+.||+|+||.||++...+++.||||++...... ....+.+.+|+.+               
T Consensus        16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv~~~   94 (313)
T 3cek_A           16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLY   94 (313)
T ss_dssp             ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred             CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccccc-ccchHHHHHHHHHHHhccccCCceEEEE
Confidence            334555566678899999999999999999998888999999999654332 2234555566554               


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                           +..|++.||.|||++   +++|+||||+||+++. +.++|+||
T Consensus        95 ~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Df  170 (313)
T 3cek_A           95 DYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDF  170 (313)
T ss_dssp             EEEECSSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCC
T ss_pred             EEeecCCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeec
Confidence                                                 334899999999999   9999999999999964 78999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++..........           ......|+..|+|||++.......   ........++.++|+||||+++|+|++|+
T Consensus       171 g~~~~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~~~~~~~~Di~slG~il~el~~g~  236 (313)
T 3cek_A          171 GIANQMQPDTTSV-----------VKDSQVGTVNYMPPEAIKDMSSSR---ENGKSKSKISPKSDVWSLGCILYYMTYGK  236 (313)
T ss_dssp             SSSCC-------------------------CCGGGCCHHHHTTCC-------------CCCHHHHHHHHHHHHHHHHHSS
T ss_pred             cccccccCccccc-----------cccCCCCCCCcCCHHHHhhccccc---ccccccccCCchHHHHHHHHHHHHHHhCC
Confidence            9987654322110           012346899999987765432111   11112245688999999999999999999


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||...
T Consensus       237 ~pf~~~  242 (313)
T 3cek_A          237 TPFQQI  242 (313)
T ss_dssp             CTTTTC
T ss_pred             CchhhH
Confidence            999753

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.94  E-value=1.2e-26  Score=196.11  Aligned_cols=153  Identities=35%  Similarity=0.482  Sum_probs=117.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHH----HHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFV----KSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~----~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++...........    +.+.+|+.+                    
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   96 (287)
T 4f0f_A           17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP   96 (287)
T ss_dssp             CSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT
T ss_pred             hhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC
Confidence            357899999999999999999966 5799999999976443322111    455556554                    


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcCCCC-----eEEeec
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLS--IVHRDISSNNILLDSNLE-----AFVADF  141 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~~~~-----~~l~df  141 (257)
                                                    +..|++.|+.|||++   +  ++|+||||+||+++.++.     ++|+||
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df  173 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADF  173 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred             eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence                                          344899999999999   8  999999999999987776     999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++......                .....||..|+|||++..            ....++.++|+||+|+++|+|++|+
T Consensus       174 g~~~~~~~~----------------~~~~~g~~~y~aPE~~~~------------~~~~~~~~~Di~slG~~l~~l~~g~  225 (287)
T 4f0f_A          174 GLSQQSVHS----------------VSGLLGNFQWMAPETIGA------------EEESYTEKADTYSFAMILYTILTGE  225 (287)
T ss_dssp             TTCBCCSSC----------------EECCCCCCTTSCGGGSSC------------SSCEECHHHHHHHHHHHHHHHHHSS
T ss_pred             Ccccccccc----------------ccccCCCccccCchhhcc------------CCCCcCchhhHHHHHHHHHHHHcCC
Confidence            998743211                123468899999554321            2233578999999999999999999


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||...
T Consensus       226 ~pf~~~  231 (287)
T 4f0f_A          226 GPFDEY  231 (287)
T ss_dssp             CTTTTC
T ss_pred             CCCccc
Confidence            999754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.94  E-value=1.1e-26  Score=209.03  Aligned_cols=148  Identities=28%  Similarity=0.427  Sum_probs=118.6

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      +....++|++.+.||+|+||.||+|... |+.||||+++....     .+.+.+|+.+                      
T Consensus       188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  261 (450)
T 1k9a_A          188 WALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT-----AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG  261 (450)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCTT-----SHHHHHHHHHHHTCCCTTBCCEEEEEECTTSC
T ss_pred             cccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCchH-----HHHHHHHHHHHHhccCCCEEEEEEEEEcCCCc
Confidence            3456788999999999999999999875 77999999976431     2344455544                      


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      ++.|++.|++|||++   +++||||||+||+++.++.++|+|||++..
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             eEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence                                            445899999999999   999999999999999999999999999874


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~  225 (257)
                      .....                ....++..|+|              ||.+.+..++.++||||||+++|||++ |+.||.
T Consensus       339 ~~~~~----------------~~~~~~~~y~a--------------PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~  388 (450)
T 1k9a_A          339 ASSTQ----------------DTGKLPVKWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  388 (450)
T ss_dssp             CC----------------------CCCTTTSC--------------HHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             ccccc----------------cCCCCCcceeC--------------HHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            42211                11245778999              666666678899999999999999998 999998


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       389 ~~  390 (450)
T 1k9a_A          389 RI  390 (450)
T ss_dssp             TS
T ss_pred             CC
Confidence            65

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.94  E-value=7.9e-27  Score=198.25  Aligned_cols=157  Identities=27%  Similarity=0.413  Sum_probs=115.9

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHH--------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH--------------------------   97 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~--------------------------   97 (257)
                      ..++|++.+.||+|+||.||+|.. +++.||||++.....      ..+..|.+                          
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~------~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~   78 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE------KSWFRETELYNTVMLRHENILGFIASDMTSRHSS   78 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGH------HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccc------hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC
Confidence            357899999999999999999987 688999999865422      11222222                          


Q ss_pred             ------------------------------HHHHHHHHHHHHHh--------hCCCCCeEeeCCCCCCeEEcCCCCeEEe
Q 039073           98 ------------------------------VLSTSVAHALSYLH--------HDCTLSIVHRDISSNNILLDSNLEAFVA  139 (257)
Q Consensus        98 ------------------------------~l~~~i~~~l~~LH--------~~~~~~i~H~dLkp~nill~~~~~~~l~  139 (257)
                                                    .++.|++.|+.|||        +.   +++||||||+||+++.++.++|+
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~  155 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIA  155 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEEC
T ss_pred             ceeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEe
Confidence                                          14558999999999        77   99999999999999999999999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||++............         ......||+.|+|||++.........        .++.++|||||||++|||++
T Consensus       156 Dfg~a~~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~--------~~~~~~DvwslG~il~el~t  218 (301)
T 3q4u_A          156 DLGLAVMHSQSTNQLDV---------GNNPRVGTKRYMAPEVLDETIQVDCF--------DSYKRVDIWAFGLVLWEVAR  218 (301)
T ss_dssp             CCTTCEEEETTTTEEEC---------CCCCCCCCGGGCCHHHHTTCCCTTCH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCeeecccccccccc---------cccccccccceeChhhhcCcCCCCcc--------cCCchhhHHHHHHHHHHHHh
Confidence            99998765433211100         01224689999997766443221100        13468999999999999999


Q ss_pred             C----------CCCCccc
Q 039073          220 G----------THPGELL  227 (257)
Q Consensus       220 G----------~~Pf~~~  227 (257)
                      |          +.||...
T Consensus       219 g~~~~~~~~~~~~pf~~~  236 (301)
T 3q4u_A          219 RMVSNGIVEDYKPPFYDV  236 (301)
T ss_dssp             TBCBTTBCCCCCCTTTTT
T ss_pred             hhcCcccccccccccccc
Confidence            9          8888643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.94  E-value=4e-27  Score=199.04  Aligned_cols=158  Identities=30%  Similarity=0.438  Sum_probs=124.7

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      +++++....++|++.+.||+|+||.||+|.+. ++..||+|++......    .+.+.+|+.+                 
T Consensus         4 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~   79 (288)
T 3kfa_A            4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCT   79 (288)
T ss_dssp             TCCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTH----HHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             chhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHH----HHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            34455667889999999999999999999665 5888999999764332    3345555544                 


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg  156 (288)
T 3kfa_A           80 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFG  156 (288)
T ss_dssp             SSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             cCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCc
Confidence                                                334899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GT  221 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~  221 (257)
                      ++.........            ......++..|+|              ||...+..++.++|+||+|+++|+|++ |.
T Consensus       157 ~~~~~~~~~~~------------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~ll~~g~  210 (288)
T 3kfa_A          157 LSRLMTGDTYT------------AHAGAKFPIKWTA--------------PESLAYNKFSIKSDVWAFGVLLWEIATYGM  210 (288)
T ss_dssp             GGGTSCSSSSE------------EETTEEECGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             cceeccCCccc------------cccCCccccCcCC--------------hhhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            98765432211            0122456778999              555666667889999999999999999 99


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||.+.
T Consensus       211 ~p~~~~  216 (288)
T 3kfa_A          211 SPYPGI  216 (288)
T ss_dssp             CSSTTC
T ss_pred             CCCCCC
Confidence            999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.94  E-value=2.1e-26  Score=200.10  Aligned_cols=164  Identities=23%  Similarity=0.369  Sum_probs=120.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +|+.||||++....  .......+.+|+.+                        
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD--KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc--cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCcc
Confidence            4678999999999999999999664 78999999996532  22234455556554                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++....
T Consensus        87 ~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A           87 NEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             CCEEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ceEEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence                                          344899999999999   99999999999999999999999999998764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..........   ..........||..|+|||++..             +..++.++|+||+||++|+|++|+.||.+..
T Consensus       164 ~~~~~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~-------------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  227 (353)
T 2b9h_A          164 ESAADNSEPT---GQQSGMVEFVATRWYRAPEVMLT-------------SAKYSRAMDVWSCGCILAELFLRRPIFPGRD  227 (353)
T ss_dssp             -------------------CCCCCCGGGCCHHHHHS-------------CCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccccccCcc---ccccchhhccccccccCCeeecc-------------CCCccchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            3321111000   00000123468999999555432             2346889999999999999999999998653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.94  E-value=1e-26  Score=197.39  Aligned_cols=154  Identities=25%  Similarity=0.413  Sum_probs=117.3

Q ss_pred             hccccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|..     .+++.||||++....   ....+.+.+|+.+                    
T Consensus         8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   84 (295)
T 3ugc_A            8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG   84 (295)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH
T ss_pred             CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            357899999999999999999973     368899999997542   2334556666655                    


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++
T Consensus        85 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           85 RRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             HTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             CCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCccc
Confidence                                              334899999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ...........          ......++..|+|              ||...+..++.++||||+|+++|+|++|..||
T Consensus       162 ~~~~~~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~  217 (295)
T 3ugc_A          162 KVLPQDKEFFK----------VKEPGESPIFWYA--------------PESLTESKFSVASDVWSFGVVLYELFTYIEKS  217 (295)
T ss_dssp             C-----------------------CTTCGGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccCCcceee----------eccCCCCccceeC--------------cHHhcCCCCChHHHHHHHHHHHHHHHhccccc
Confidence            86643321100          0122346778999              55566666788999999999999999999998


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      ...
T Consensus       218 ~~~  220 (295)
T 3ugc_A          218 KSP  220 (295)
T ss_dssp             CSH
T ss_pred             CCC
Confidence            743

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.94  E-value=1.1e-26  Score=195.91  Aligned_cols=156  Identities=28%  Similarity=0.396  Sum_probs=111.6

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      ....++|++.+.||+|+||.||+|...    .+..||+|++....  .....+.+.+|+..                   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   88 (281)
T 1mp8_A           11 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN   88 (281)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCccceEEEEEccC
Confidence            445678999999999999999999653    25579999987542  22334455666554                   


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++..
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           89 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccc
Confidence                                            334899999999999   999999999999999999999999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~  225 (257)
                      ........            .....+++.|+|              ||...+..++.++|+||+|+++|+|++ |..||.
T Consensus       166 ~~~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~  219 (281)
T 1mp8_A          166 MEDSTYYK------------ASKGKLPIKWMA--------------PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ  219 (281)
T ss_dssp             -------------------------CCGGGCC--------------HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cCcccccc------------cccCCCcccccC--------------hhhcccCCCCCccCchHHHHHHHHHHhcCCCCCC
Confidence            54322110            112345778999              555555667889999999999999996 999998


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +..
T Consensus       220 ~~~  222 (281)
T 1mp8_A          220 GVK  222 (281)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            643

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.94  E-value=2e-26  Score=198.05  Aligned_cols=110  Identities=20%  Similarity=0.329  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchh
Q 039073           99 LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYA  178 (257)
Q Consensus        99 l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  178 (257)
                      ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++............... ...........||+.|+|
T Consensus       169 i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~y~a  244 (332)
T 3qd2_B          169 IFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP-MPAYATHTGQVGTKLYMS  244 (332)
T ss_dssp             HHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC---------------CCCSCC-CGGGSC
T ss_pred             HHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccccc-ccccccccccCCCcCccC
Confidence            556899999999999   9999999999999999999999999999876543221110000 000011233568999999


Q ss_pred             hhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          179 LWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       179 pe~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                                    ||...+..++.++|+||+||++|+|++|..|+..
T Consensus       245 --------------PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~  278 (332)
T 3qd2_B          245 --------------PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME  278 (332)
T ss_dssp             --------------HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             --------------hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH
Confidence                          5666666679999999999999999999888753

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.94  E-value=3.1e-26  Score=195.13  Aligned_cols=152  Identities=32%  Similarity=0.486  Sum_probs=121.4

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..+.|++.+.||+|+||.||+|.. .+++.||+|++........  .+.+.+|+.+                        
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   97 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDE--IEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWI   97 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTT--HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHH--HHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence            456799999999999999999965 5789999999976533221  3455566555                        


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+........
T Consensus        98 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~  174 (303)
T 3a7i_A           98 IMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI  174 (303)
T ss_dssp             EEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred             EEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence                                      344899999999999   999999999999999999999999999876543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .             .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       175 ~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  222 (303)
T 3a7i_A          175 K-------------RNTFVGTPFWMA--------------PEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL  222 (303)
T ss_dssp             C-------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             c-------------cCccCCCcCccC--------------HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence            1             122468889999              55555566788999999999999999999999754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.94  E-value=5.3e-27  Score=202.07  Aligned_cols=161  Identities=26%  Similarity=0.340  Sum_probs=119.7

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHH-------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------   97 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-------------------------   97 (257)
                      -..++|++.+.||+|+||+||+|... ++.||||++......    ......|+.                         
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   95 (322)
T 3soc_A           21 FQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQ----SWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDV   95 (322)
T ss_dssp             ETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             cchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchH----HHHHHHHHHHHhcCCCCCchhhcceeccCCCCCc
Confidence            45678999999999999999999875 789999998654221    112222322                         


Q ss_pred             -----------------------------HHHHHHHHHHHHHhhC-------CCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           98 -----------------------------VLSTSVAHALSYLHHD-------CTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        98 -----------------------------~l~~~i~~~l~~LH~~-------~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                   .++.|++.|+.|||+.       +..+++||||||+||+++.++.++|+||
T Consensus        96 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF  175 (322)
T 3soc_A           96 DLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF  175 (322)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred             eEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence                                         2556899999999965       1238999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++...........           .....||+.|+|||++.......         ..++.++|||||||++|||++|+
T Consensus       176 g~a~~~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~---------~~~~~~~DiwslG~il~el~tg~  235 (322)
T 3soc_A          176 GLALKFEAGKSAGD-----------THGQVGTRRYMAPEVLEGAINFQ---------RDAFLRIDMYAMGLVLWELASRC  235 (322)
T ss_dssp             TTCEEECTTSCCCC-----------CTTCCCCGGGCCHHHHTTCCCCC---------HHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CcccccccccCccc-----------cccCccCccccCHhhcccccccC---------cCCCccchhHHHHHHHHHHHhCC
Confidence            99976643322111           12356899999977765432211         12356889999999999999999


Q ss_pred             CCCcccc
Q 039073          222 HPGELLS  228 (257)
Q Consensus       222 ~Pf~~~~  228 (257)
                      .||.+..
T Consensus       236 ~pf~~~~  242 (322)
T 3soc_A          236 TAADGPV  242 (322)
T ss_dssp             TTSSSCC
T ss_pred             CCCCCCc
Confidence            9998643

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=199.99  Aligned_cols=150  Identities=26%  Similarity=0.373  Sum_probs=118.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|.+.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+                         
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            57899999999999999999965 4789999999976432 23334555566555                         


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++.....
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  178 (353)
T 3coi_A          102 YDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA  178 (353)
T ss_dssp             CCCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC---
T ss_pred             eeEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCCC
Confidence                                         344899999999999   999999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc-CCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT-MVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~-~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..                ....||..|+|||+              ..+ ..++.++|+||+||++|+|++|+.||.+.+
T Consensus       179 ~~----------------~~~~~t~~y~aPE~--------------~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  228 (353)
T 3coi_A          179 EM----------------TGYVVTRWYRAPEV--------------ILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  228 (353)
T ss_dssp             ---------------------CCSBCCSCHHH--------------HSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred             Cc----------------cccccCcCcCCHHH--------------HhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            11                12457889999554              443 346889999999999999999999998643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.94  E-value=1.1e-26  Score=196.81  Aligned_cols=158  Identities=29%  Similarity=0.451  Sum_probs=113.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ....++|++.+.||+|+||.||+|....  .||+|+++.... .....+.+.+|+.+                       
T Consensus        20 ei~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~l   96 (289)
T 3og7_A           20 EIPDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAI   96 (289)
T ss_dssp             BCCTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEE
T ss_pred             ccCccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEE
Confidence            3446789999999999999999997643  499999976543 23335566677665                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++......
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  173 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW  173 (289)
T ss_dssp             EEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred             EEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccc
Confidence                                        344899999999999   9999999999999999999999999998754322


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....           ......||..|+|||++...           .+..++.++||||+|+++|+|++|+.||...
T Consensus       174 ~~~~-----------~~~~~~gt~~y~aPE~~~~~-----------~~~~~~~~~Di~slG~il~el~~g~~p~~~~  228 (289)
T 3og7_A          174 SGSH-----------QFEQLSGSILWMAPEVIRMQ-----------DSNPYSFQSDVYAFGIVLYELMTGQLPYSNI  228 (289)
T ss_dssp             ---------------------CCCTTCCHHHHC---------------CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             cccc-----------cccccCCCccccCchhhccc-----------CCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence            1111           11235689999996654311           1344678999999999999999999999864

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.94  E-value=1.2e-26  Score=198.34  Aligned_cols=156  Identities=24%  Similarity=0.333  Sum_probs=112.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ....++|++.+.||+|+||.||+|.. .+|+.||+|++.............+.+|+.+                      
T Consensus        28 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  107 (310)
T 2wqm_A           28 YNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL  107 (310)
T ss_dssp             TSSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             cccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcE
Confidence            34567899999999999999999965 5799999999986544444445556666555                      


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       +..|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++.
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~  184 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR  184 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred             EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence                                             334899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........             .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||.
T Consensus       185 ~~~~~~~~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  237 (310)
T 2wqm_A          185 FFSSKTTA-------------AHSLVGTPYYMS--------------PERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  237 (310)
T ss_dssp             ---------------------------CCSSCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             eecCCCcc-------------ccccCCCeeEeC--------------hHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence            65332211             122457889999              555555567889999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       238 ~~  239 (310)
T 2wqm_A          238 GD  239 (310)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.8e-27  Score=207.86  Aligned_cols=155  Identities=28%  Similarity=0.444  Sum_probs=114.7

Q ss_pred             ccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCcccc----------ccH-HHHHHHH----------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSET----------EDS-AFVKSFQ----------------   93 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~----------~~~-~~~~~~~----------------   93 (257)
                      .++|++.+.||+|+||.||+|..    .+++.||||+++....          ..+ ...+.+.                
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            47899999999999999999976    4789999999864321          000 1111110                


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           94 --------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        94 --------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                .++..+..|++.||.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence                                      12233556899999999999   9999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ......            ......||+.|+|||++...            ...++.++|||||||++|+|++|+.||..
T Consensus       210 ~~~~~~------------~~~~~~gt~~y~aPE~~~~~------------~~~~~~~~DvwslG~il~ell~g~~pf~~  264 (355)
T 1vzo_A          210 VADETE------------RAYDFCGTIEYMAPDIVRGG------------DSGHDKAVDWWSLGVLMYELLTGASPFTV  264 (355)
T ss_dssp             CGGGGG------------GGCGGGSCCTTCCHHHHTTC------------C---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred             ccCCCC------------cccCcccCcCccChhhhcCC------------CCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence            322111            01235689999995554321            12257899999999999999999999974

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.94  E-value=7.1e-27  Score=201.88  Aligned_cols=157  Identities=21%  Similarity=0.282  Sum_probs=111.9

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .....++|++.+.||+|+||.||+|.. .+++.||||++....... ...+.+.+|+.+                     
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (329)
T 3gbz_A           29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE-GVPGTAIREVSLLKELQHRNIIELKSVIHHNHR  107 (329)
T ss_dssp             ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTE
T ss_pred             cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc-ccchhHHHHHHHHHHcCCCCcceEEEEEecCCE
Confidence            345678999999999999999999965 478999999997543222 112333344443                     


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-----CCCCeEEeeccCc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-----SNLEAFVADFGTA  144 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-----~~~~~~l~dfg~~  144 (257)
                                                   +..|++.||.|||++   +++||||||+||+++     .++.++|+|||++
T Consensus       108 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a  184 (329)
T 3gbz_A          108 LHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA  184 (329)
T ss_dssp             EEEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred             EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence                                         456899999999999   999999999999995     4445999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      .........             .....||..|+|||+              ..+. .++.++||||+||++|+|++|+.|
T Consensus       185 ~~~~~~~~~-------------~~~~~~t~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~ell~g~~p  237 (329)
T 3gbz_A          185 RAFGIPIRQ-------------FTHEIITLWYRPPEI--------------LLGSRHYSTSVDIWSIACIWAEMLMKTPL  237 (329)
T ss_dssp             HHHC------------------------CCTTCCHHH--------------HTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cccCCcccc-------------cCCCcCCccccCHHH--------------hcCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            765422211             123467899999554              4442 368899999999999999999999


Q ss_pred             Ccccc
Q 039073          224 GELLS  228 (257)
Q Consensus       224 f~~~~  228 (257)
                      |.+..
T Consensus       238 f~~~~  242 (329)
T 3gbz_A          238 FPGDS  242 (329)
T ss_dssp             SCCSS
T ss_pred             cCCCC
Confidence            97643

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.6e-27  Score=205.37  Aligned_cols=155  Identities=21%  Similarity=0.324  Sum_probs=118.4

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH-----HHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS-----AFVKSFQN-----------------------   94 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~-----~~~~~~~~-----------------------   94 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++........     ...+.+.+                       
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            357899999999999999999965 5788999999875421110     00011111                       


Q ss_pred             -----------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           95 -----------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        95 -----------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                   ++..+..|++.||.|||++   +++||||||+||+++.++.++|+|||++.
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~  178 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAA  178 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccce
Confidence                                         2333667999999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      .......              .....||+.|+|||+              ..+..+ +.++|||||||++|+|++|+.||
T Consensus       179 ~~~~~~~--------------~~~~~gt~~y~aPE~--------------~~~~~~~~~~~DiwslG~il~el~~g~~pf  230 (335)
T 3dls_A          179 YLERGKL--------------FYTFCGTIEYCAPEV--------------LMGNPYRGPELEMWSLGVTLYTLVFEENPF  230 (335)
T ss_dssp             ECCTTCC--------------BCEECSCGGGCCHHH--------------HTTCCBCSHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ECCCCCc--------------eeccCCCccccChhh--------------hcCCCCCCCcccchhHHHHHHHHHhCCCch
Confidence            6543221              123568999999554              444444 67899999999999999999999


Q ss_pred             ccccc
Q 039073          225 ELLSS  229 (257)
Q Consensus       225 ~~~~~  229 (257)
                      .....
T Consensus       231 ~~~~~  235 (335)
T 3dls_A          231 CELEE  235 (335)
T ss_dssp             SSGGG
T ss_pred             hhHHH
Confidence            86543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=2.4e-26  Score=202.54  Aligned_cols=157  Identities=25%  Similarity=0.333  Sum_probs=116.2

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHH--------------------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSA--------------------------------   87 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~--------------------------------   87 (257)
                      +....++|++.+.||+|+||.||+|.. .+|+.||||++.........                                
T Consensus         2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~   81 (383)
T 3eb0_A            2 LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQ   81 (383)
T ss_dssp             ----CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC---------
T ss_pred             CccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCcccccccc
Confidence            345678999999999999999999965 57999999988543111000                                


Q ss_pred             ---------------------------------------------HHHHHH--------HHHHHHHHHHHHHHHHHhhCC
Q 039073           88 ---------------------------------------------FVKSFQ--------NEAHVLSTSVAHALSYLHHDC  114 (257)
Q Consensus        88 ---------------------------------------------~~~~~~--------~e~~~l~~~i~~~l~~LH~~~  114 (257)
                                                                   ....+.        .++..++.|++.||.|||++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  160 (383)
T 3eb0_A           82 PPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-  160 (383)
T ss_dssp             ----------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence                                                         011110        13445677999999999999 


Q ss_pred             CCCeEeeCCCCCCeEEc-CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhh
Q 039073          115 TLSIVHRDISSNNILLD-SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHV  193 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~p  193 (257)
                        +++||||||+||+++ .++.++|+|||++.........              ....||..|+|||+            
T Consensus       161 --gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~--------------~~~~~t~~y~aPE~------------  212 (383)
T 3eb0_A          161 --GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS--------------VAYICSRFYRAPEL------------  212 (383)
T ss_dssp             --TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC--------------CCCCCCSSCCCHHH------------
T ss_pred             --cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC--------------cCcccCCCccCHHH------------
Confidence              999999999999998 5788999999999865433221              12457889999554            


Q ss_pred             hhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          194 ELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       194 e~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                        +.+. .++.++||||+||++|+|++|+.||.+..
T Consensus       213 --~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  246 (383)
T 3eb0_A          213 --MLGATEYTPSIDLWSIGCVFGELILGKPLFSGET  246 (383)
T ss_dssp             --HTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             --hcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC
Confidence              4433 26889999999999999999999998654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.94  E-value=8.4e-27  Score=211.69  Aligned_cols=150  Identities=27%  Similarity=0.460  Sum_probs=116.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||||++........ ....+.+|+.+                         
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK-DTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCS-CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccch-HHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            578999999999999999999664 799999999864322111 12345555555                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc---CCCCeEEeeccCcccccc
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD---SNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~---~~~~~~l~dfg~~~~~~~  149 (257)
                                                +..|++.||.|||++   +++||||||+||+++   .++.++|+|||++.....
T Consensus       100 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  176 (486)
T 3mwu_A          100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (486)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC
T ss_pred             EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECCC
Confidence                                      344899999999999   999999999999995   456799999999876543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              .....||+.|+|||+              +.+ .++.++||||+||++|+|++|++||.+.
T Consensus       177 ~~~--------------~~~~~gt~~y~aPE~--------------~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          177 NTK--------------MKDRIGTAYYIAPEV--------------LRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             C------------------CCTTGGGGCCGGG--------------GGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCc--------------cCCCcCCCCCCCHHH--------------hCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            221              123468999999554              433 3688999999999999999999999764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.94  E-value=7.3e-27  Score=200.58  Aligned_cols=167  Identities=24%  Similarity=0.350  Sum_probs=127.5

Q ss_pred             cCCCCcCHHHHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH------
Q 039073           31 NYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV------   98 (257)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------   98 (257)
                      +....+..+++....++|++.+.||+|+||.||+|...      +++.||+|++......  .....+.+|+.+      
T Consensus        10 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h   87 (322)
T 1p4o_A           10 SAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM--RERIEFLNEASVMKEFNC   87 (322)
T ss_dssp             BCCSCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCH--HHHHHHHHHHHHGGGCCC
T ss_pred             ccccccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCH--HHHHHHHHHHHHHHhcCC
Confidence            34455666777888899999999999999999999543      4778999999754321  122334444433      


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCC
Q 039073           99 -------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDI  123 (257)
Q Consensus        99 -------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dL  123 (257)
                                                                             ++.|++.||.|||++   +++|+||
T Consensus        88 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~di  164 (322)
T 1p4o_A           88 HHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDL  164 (322)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCC
T ss_pred             CCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCC
Confidence                                                                   345899999999999   9999999


Q ss_pred             CCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCC
Q 039073          124 SSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTE  203 (257)
Q Consensus       124 kp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~  203 (257)
                      ||+||+++.++.++|+|||++.........           .......+++.|+|              ||...+..++.
T Consensus       165 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~a--------------PE~~~~~~~~~  219 (322)
T 1p4o_A          165 AARNCMVAEDFTVKIGDFGMTRDIYETDYY-----------RKGGKGLLPVRWMS--------------PESLKDGVFTT  219 (322)
T ss_dssp             SGGGEEECTTCCEEECCTTCCCGGGGGGCE-----------EGGGSSEECGGGCC--------------HHHHHHCCCCH
T ss_pred             ccceEEEcCCCeEEECcCcccccccccccc-----------ccccCCCCCCCccC--------------hhhhccCCCCc
Confidence            999999999999999999998755322110           01122456788999              55555666788


Q ss_pred             ccchhhHHHHHHHHHh-CCCCCccc
Q 039073          204 KCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       204 ~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ++|+||+|+++|+|++ |..||.+.
T Consensus       220 ~~Di~slG~il~el~~~g~~p~~~~  244 (322)
T 1p4o_A          220 YSDVWSFGVVLWEIATLAEQPYQGL  244 (322)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             hhhHHHHHHHHHHHHhcCCCccccC
Confidence            9999999999999999 89999864

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.94  E-value=2.2e-26  Score=196.84  Aligned_cols=163  Identities=25%  Similarity=0.371  Sum_probs=125.8

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------   98 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------   98 (257)
                      ..+...+....++|++.+.||+|+||.||+|..      .+++.||||++......  ...+.+.+|+.+          
T Consensus        16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~i   93 (316)
T 2xir_A           16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNV   93 (316)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTB
T ss_pred             cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCc--HHHHHHHHHHHHHHhcccCCCe
Confidence            345667777789999999999999999999963      35788999999764322  223344444443          


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHhhCCCCCeE
Q 039073           99 -----------------------------------------------------------LSTSVAHALSYLHHDCTLSIV  119 (257)
Q Consensus        99 -----------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~  119 (257)
                                                                                 +..|++.|+.|||++   +++
T Consensus        94 v~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~  170 (316)
T 2xir_A           94 VNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI  170 (316)
T ss_dssp             CCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred             eeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence                                                                       234899999999999   999


Q ss_pred             eeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC
Q 039073          120 HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM  199 (257)
Q Consensus       120 H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~  199 (257)
                      |+||||+||+++.++.++|+|||++..........           ......||..|+|              ||...+.
T Consensus       171 H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~t~~y~a--------------PE~~~~~  225 (316)
T 2xir_A          171 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV-----------RKGDARLPLKWMA--------------PETIFDR  225 (316)
T ss_dssp             CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSE-----------EETTEEECGGGCC--------------HHHHHHC
T ss_pred             cccCccceEEECCCCCEEECCCccccccccCccce-----------eccCCCcceeecC--------------chhhccc
Confidence            99999999999999999999999987653322110           0123457888999              5555566


Q ss_pred             CCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          200 VVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       200 ~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .++.++|+||+|+++|+|++ |..||.+.
T Consensus       226 ~~~~~~Di~slG~il~~l~t~g~~p~~~~  254 (316)
T 2xir_A          226 VYTIQSDVWSFGVLLWEIFSLGASPYPGV  254 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             cccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence            67889999999999999998 99999764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.94  E-value=1.1e-26  Score=198.47  Aligned_cols=158  Identities=23%  Similarity=0.385  Sum_probs=120.3

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      ++....++|.+.+.||+|+||.||+|..      .+++.||+|++.....  ....+.+.+|+.+               
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~   94 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENAS--PSELRDLLSEFNVLKQVNHPHVIKLYGA   94 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCC--HHHHHHHHHHHHHHhhCCCCceeeEEEE
Confidence            3444578899999999999999999964      3457899999975432  2223344444433               


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHhhCCCCCe
Q 039073           99 ------------------------------------------------------------LSTSVAHALSYLHHDCTLSI  118 (257)
Q Consensus        99 ------------------------------------------------------------l~~~i~~~l~~LH~~~~~~i  118 (257)
                                                                                  +..|++.||.|||++   ++
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i  171 (314)
T 2ivs_A           95 CSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KL  171 (314)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             EecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CC
Confidence                                                                        345899999999999   99


Q ss_pred             EeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc
Q 039073          119 VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT  198 (257)
Q Consensus       119 ~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~  198 (257)
                      +|+||||+||+++.++.++|+|||++...........           .....++..|+|              ||...+
T Consensus       172 vH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~~~  226 (314)
T 2ivs_A          172 VHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVK-----------RSQGRIPVKWMA--------------IESLFD  226 (314)
T ss_dssp             ECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEEC-----------SSCCCSCGGGCC--------------HHHHHH
T ss_pred             cccccchheEEEcCCCCEEEcccccccccccccccee-----------ccCCCCcccccC--------------hhhhcC
Confidence            9999999999999999999999999876543221100           122346788999              555555


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          199 MVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       199 ~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..++.++|+||+|+++|+|++ |..||.+.
T Consensus       227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~  256 (314)
T 2ivs_A          227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  256 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            556889999999999999999 99999864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=2.5e-26  Score=199.09  Aligned_cols=164  Identities=27%  Similarity=0.400  Sum_probs=118.7

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc--cHHHHHHHHHHHH--------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE--DSAFVKSFQNEAH--------------------   97 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~~~~e~~--------------------   97 (257)
                      +....++|++.+.||+|+||.||+|.. .+++.||+|++......  .....+.+.+|+.                    
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            356678899999999999999999965 57889999998643211  0111223333332                    


Q ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Q 039073           98 -----------------------------------------------------------------------VLSTSVAHA  106 (257)
Q Consensus        98 -----------------------------------------------------------------------~l~~~i~~~  106 (257)
                                                                                             .++.|++.|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence                                                                                   245589999


Q ss_pred             HHHHhhCCCCCeEeeCCCCCCeEEcCCC--CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhh
Q 039073          107 LSYLHHDCTLSIVHRDISSNNILLDSNL--EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQ  184 (257)
Q Consensus       107 l~~LH~~~~~~i~H~dLkp~nill~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~  184 (257)
                      |.|||+.   +++|+||||+||+++.++  .++|+|||++............         ......||+.|+|||++..
T Consensus       181 l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~  248 (345)
T 3hko_A          181 LHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYY---------GMTTKAGTPYFVAPEVLNT  248 (345)
T ss_dssp             HHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------------CCCGGGCCHHHHTC
T ss_pred             HHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccc---------cccccCCCccccCchhhcc
Confidence            9999999   999999999999998776  8999999999865432221100         0123568999999555422


Q ss_pred             cCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          185 RHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       185 ~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .            ...++.++||||||+++|+|++|+.||.+..
T Consensus       249 ~------------~~~~~~~~DiwslG~il~el~~g~~pf~~~~  280 (345)
T 3hko_A          249 T------------NESYGPKCDAWSAGVLLHLLLMGAVPFPGVN  280 (345)
T ss_dssp             S------------SSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             C------------CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            1            1346889999999999999999999997643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=205.67  Aligned_cols=153  Identities=25%  Similarity=0.346  Sum_probs=104.2

Q ss_pred             cccccc-ceeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHH-------------------------
Q 039073           45 TEEFHI-KYCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNE-------------------------   95 (257)
Q Consensus        45 ~~~~~~-~~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e-------------------------   95 (257)
                      .+.|++ .+.||+|+||.||+|...   +++.||||++.......     .+.+|                         
T Consensus        19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~-----~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   93 (405)
T 3rgf_A           19 EDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISM-----SACREIALLRELKHPNVISLQKVFLSHADR   93 (405)
T ss_dssp             HHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCH-----HHHHHHHHHHHCCCTTBCCCCEEEEETTTT
T ss_pred             hhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCH-----HHHHHHHHHHhcCCCCeeeEeeEEecCCCC
Confidence            455776 558999999999999754   57889999997543221     12222                         


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE----cCCCC
Q 039073           96 ------------------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL----DSNLE  135 (257)
Q Consensus        96 ------------------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill----~~~~~  135 (257)
                                                          +..++.|++.||.|||++   +|+||||||+||++    +.++.
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~  170 (405)
T 3rgf_A           94 KVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR  170 (405)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred             eEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence                                                223556899999999999   99999999999999    67789


Q ss_pred             eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ++|+|||++..........          .......||+.|+|||++...             ..++.++||||+||++|
T Consensus       171 ~kl~Dfg~a~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~-------------~~~~~~~DiwSlG~il~  227 (405)
T 3rgf_A          171 VKIADMGFARLFNSPLKPL----------ADLDPVVVTFWYRAPELLLGA-------------RHYTKAIDIWAIGCIFA  227 (405)
T ss_dssp             EEECCTTCCC--------------------------CCCTTCCHHHHTTC-------------CSCCHHHHHHHHHHHHH
T ss_pred             EEEEECCCceecCCCCccc----------ccCCCceecCcccCchhhcCC-------------CcccchhhhHHHHHHHH
Confidence            9999999998664321110          011335789999995544322             23688999999999999


Q ss_pred             HHHhCCCCCcccc
Q 039073          216 KVLMGTHPGELLS  228 (257)
Q Consensus       216 ell~G~~Pf~~~~  228 (257)
                      +|++|++||.+..
T Consensus       228 ell~g~~pf~~~~  240 (405)
T 3rgf_A          228 ELLTSEPIFHCRQ  240 (405)
T ss_dssp             HHHHSSCTTCCCC
T ss_pred             HHHhCCCCCCCcc
Confidence            9999999997643

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.94  E-value=8.2e-27  Score=214.26  Aligned_cols=157  Identities=29%  Similarity=0.406  Sum_probs=124.5

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      .+.|....++|++.+.||+|+||.||+|.+..+..||||+++......    +.+.+|+.+                   
T Consensus       259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~  334 (535)
T 2h8h_A          259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP----EAFLQEAQVMKKLRHEKLVQLYAVVSEE  334 (535)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCH----HHHHHHHHHHHhCCCCCEeeEEEEEeec
Confidence            445666788899999999999999999988877889999998654332    344555554                   


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~  411 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLAR  411 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTT
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccce
Confidence                                             344899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf  224 (257)
                      ........            ......++..|+|              ||.+.+..++.++|||||||++|||++ |+.||
T Consensus       412 ~~~~~~~~------------~~~~~~~~~~y~a--------------PE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~  465 (535)
T 2h8h_A          412 LIEDNEYT------------ARQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELTTKGRVPY  465 (535)
T ss_dssp             TCCCHHHH------------TTCSTTSCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSS
T ss_pred             ecCCCcee------------cccCCcCcccccC--------------HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            65321100            0012345678999              566666667899999999999999999 99999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       466 ~~~  468 (535)
T 2h8h_A          466 PGM  468 (535)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.94  E-value=2.2e-26  Score=193.21  Aligned_cols=155  Identities=29%  Similarity=0.432  Sum_probs=120.6

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++.......  ..+.+.+|+.+                        
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD--CPENIKKEICINKMLNHENVVKFYGHRREGNIQYL   82 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTT--HHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchh--hhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEE
Confidence            3578999999999999999999764 78999999987543322  23455566555                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  159 (276)
T 2yex_A           83 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (276)
T ss_dssp             EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             EEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence                                       444899999999999   99999999999999999999999999987653321


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...           ......|+..|+|||              ...+..+ +.++|+||+|+++|+|++|+.||+...
T Consensus       160 ~~~-----------~~~~~~~~~~y~aPE--------------~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  212 (276)
T 2yex_A          160 RER-----------LLNKMCGTLPYVAPE--------------LLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (276)
T ss_dssp             EEC-----------CBCCCCSCGGGCCGG--------------GGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred             chh-----------cccCCccccCccChH--------------HHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence            110           012356889999954              4444433 568999999999999999999998643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.94  E-value=4.7e-26  Score=191.53  Aligned_cols=149  Identities=25%  Similarity=0.365  Sum_probs=118.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... ++..||+|++.......   .+.+.+|+.+                        
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYL   83 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEE
Confidence            3578999999999999999999664 68899999987643332   2345555554                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~~  148 (257)
                                                 ++.|++.|+.|||++   +++|+||||+||++   +.++.++|+|||++....
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~  160 (277)
T 3f3z_A           84 VMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK  160 (277)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence                                       445899999999999   99999999999999   788899999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....              .....||+.|+|||++              .+. ++.++|+||+|+++|+|++|+.||...
T Consensus       161 ~~~~--------------~~~~~~t~~y~aPE~~--------------~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          161 PGKM--------------MRTKVGTPYYVSPQVL--------------EGL-YGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             TTSC--------------BCCCCSCTTTCCHHHH--------------TTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Cccc--------------hhccCCCCCccChHHh--------------ccc-CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence            3221              1224688999995554              332 588999999999999999999999764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.94  E-value=5.5e-26  Score=191.62  Aligned_cols=153  Identities=27%  Similarity=0.362  Sum_probs=116.9

Q ss_pred             hccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      ..++|++.+.||+|+||.||+|...    ++..||+|++.....  ....+.+.+|+.++                    
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   87 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT--LDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPT   87 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSC--HHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSC
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccC--chHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCC
Confidence            5678999999999999999999642    234699999976432  22245566666553                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     +.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++....
T Consensus        88 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  164 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIE  164 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred             EEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence                                           34899999999999   99999999999999999999999999987654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......            .....++..|+|              ||...+..++.++|+||||+++|+|++ |+.||...
T Consensus       165 ~~~~~~------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~  218 (281)
T 3cc6_A          165 DEDYYK------------ASVTRLPIKWMS--------------PESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL  218 (281)
T ss_dssp             --------------------CCCCCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             cccccc------------cccCCCCcceeC--------------chhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC
Confidence            322110            112346778999              555555667889999999999999998 99999743

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.94  E-value=9.9e-27  Score=207.62  Aligned_cols=157  Identities=24%  Similarity=0.345  Sum_probs=112.7

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc-----cHHHHHHHHHHHHH------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE-----DSAFVKSFQNEAHV------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~-----~~~~~~~~~~e~~~------------------   98 (257)
                      ...++|.+.+.||+|+||.||+|.. .+++.||||++......     .......+.+|+.+                  
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~  211 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            4467899999999999999999965 57899999998754321     11112235556655                  


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEEeeccC
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFVADFGT  143 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l~dfg~  143 (257)
                                                      +..|++.||.|||++   +++||||||+||+++.++   .++|+|||+
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~  288 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGH  288 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSST
T ss_pred             CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeeccc
Confidence                                            344899999999999   999999999999997544   599999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +........              .....||+.|+|||++...           ....++.++|+||+||++|+|++|+.|
T Consensus       289 a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~-----------~~~~~~~~~DiwslG~il~~lltg~~p  343 (419)
T 3i6u_A          289 SKILGETSL--------------MRTLCGTPTYLAPEVLVSV-----------GTAGYNRAVDCWSLGVILFICLSGYPP  343 (419)
T ss_dssp             TTSCC-------------------------CTTCCTTTTC---------------CTTHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ceecCCCcc--------------ccccCCCCCccCceeeecC-----------CCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence            986542211              1235689999996654321           123457799999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |...
T Consensus       344 f~~~  347 (419)
T 3i6u_A          344 FSEH  347 (419)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9753

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.94  E-value=2.9e-26  Score=198.26  Aligned_cols=157  Identities=25%  Similarity=0.375  Sum_probs=117.9

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe--------CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL--------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~--------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      +....++|++.+.||+|+||.||+|..        .+++.||+|++.....  ....+.+.+|+.+              
T Consensus        30 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~  107 (334)
T 2pvf_A           30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLL  107 (334)
T ss_dssp             TBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCc--HHHHHHHHHHHHHHHHhhcCCCEeeEE
Confidence            344568999999999999999999965        3477899999975432  2223344444333              


Q ss_pred             ------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCC
Q 039073           99 ------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDIS  124 (257)
Q Consensus        99 ------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLk  124 (257)
                                                                            ++.|++.||.|||+.   +++|+|||
T Consensus       108 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlk  184 (334)
T 2pvf_A          108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLA  184 (334)
T ss_dssp             EEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred             EEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCc
Confidence                                                                  344899999999999   99999999


Q ss_pred             CCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc
Q 039073          125 SNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK  204 (257)
Q Consensus       125 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~  204 (257)
                      |+||+++.++.++|+|||++..........           ......++..|+||              |...+..++.+
T Consensus       185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~aP--------------E~~~~~~~~~~  239 (334)
T 2pvf_A          185 ARNVLVTENNVMKIADFGLARDINNIDYYK-----------KTTNGRLPVKWMAP--------------EALFDRVYTHQ  239 (334)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECTTTSSEE-----------CCSCCCCCGGGCCH--------------HHHHHCEECHH
T ss_pred             cceEEEcCCCCEEEcccccccccccccccc-----------ccCCCCcccceeCh--------------HHhcCCCcChH
Confidence            999999999999999999987654321100           01223467889995              54545556889


Q ss_pred             cchhhHHHHHHHHHh-CCCCCccc
Q 039073          205 CDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       205 ~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +||||||+++|+|++ |..||.+.
T Consensus       240 ~Di~slG~il~ellt~g~~p~~~~  263 (334)
T 2pvf_A          240 SDVWSFGVLMWEIFTLGGSPYPGI  263 (334)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcCcC
Confidence            999999999999999 99999864

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.94  E-value=1.9e-26  Score=197.30  Aligned_cols=163  Identities=25%  Similarity=0.404  Sum_probs=115.2

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      .++++....++|.+.+.||+|+||.||+|...    +++.||+|++....... ...+.+.+|+..              
T Consensus        25 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~  103 (313)
T 3brb_A           25 KLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQ-REIEEFLSEAACMKDFSHPNVIRLLG  103 (313)
T ss_dssp             CTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCH-HHHHHHHHHHHHHHTCCCTTBCCCCE
T ss_pred             hHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccch-hHHHHHHHHHHHHhcCCCCCeeeeeE
Confidence            34455566788999999999999999999543    35589999997543222 223344444443              


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE
Q 039073           99 ------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL  130 (257)
Q Consensus        99 ------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill  130 (257)
                                                                      ++.|++.||.|||++   +++|+||||+||++
T Consensus       104 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli  180 (313)
T 3brb_A          104 VCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCML  180 (313)
T ss_dssp             EEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEE
T ss_pred             EEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEE
Confidence                                                            345899999999999   99999999999999


Q ss_pred             cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       131 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                      +.++.++|+|||++..........           ......++..|+|              ||...+..++.++|+|||
T Consensus       181 ~~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~sl  235 (313)
T 3brb_A          181 RDDMTVCVADFGLSKKIYSGDYYR-----------QGRIAKMPVKWIA--------------IESLADRVYTSKSDVWAF  235 (313)
T ss_dssp             CTTSCEEECSCSCC---------------------------CCGGGSC--------------HHHHHSSCCCHHHHHHHH
T ss_pred             cCCCcEEEeecCcceecccccccC-----------cccccCCCccccC--------------chhhcCCCccchhhhHHH
Confidence            999999999999987654322110           0122346778999              566666667889999999


Q ss_pred             HHHHHHHHh-CCCCCcccc
Q 039073          211 GVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       211 G~~l~ell~-G~~Pf~~~~  228 (257)
                      |+++|+|++ |..||.+..
T Consensus       236 G~il~el~~~g~~p~~~~~  254 (313)
T 3brb_A          236 GVTMWEIATRGMTPYPGVQ  254 (313)
T ss_dssp             HHHHHHHHTTSCCSSTTCC
T ss_pred             HHHHHHHHhcCCCCCccCC
Confidence            999999999 999998643

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=1.5e-26  Score=193.34  Aligned_cols=152  Identities=26%  Similarity=0.386  Sum_probs=120.4

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ...++|++.+.||+|+||.||+|...+++.||+|++.......    +.+.+|+.+                        
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (267)
T 3t9t_A            5 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL   80 (267)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEE
T ss_pred             EchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCH----HHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEE
Confidence            3467899999999999999999988888899999998754432    234444444                        


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                  ++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++......
T Consensus        81 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  157 (267)
T 3t9t_A           81 VTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  157 (267)
T ss_dssp             EECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred             EEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccc
Confidence                                        344899999999999   9999999999999999999999999998765321


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ...            ......++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||...
T Consensus       158 ~~~------------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (267)
T 3t9t_A          158 QYT------------SSTGTKFPVKWAS--------------PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  209 (267)
T ss_dssp             HHH------------STTSTTCCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccc------------ccccccccccccC--------------hhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC
Confidence            100            0112346778999              555555667889999999999999999 99999854

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.94  E-value=2.6e-26  Score=198.69  Aligned_cols=158  Identities=27%  Similarity=0.415  Sum_probs=120.9

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      .+....++|++.+.||+|+||.||+|...      +++.||||+++....  ....+.+.+|+.+               
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~  118 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDNPNIVKLLGV  118 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            44556789999999999999999999653      357899999976432  2223344444433               


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHhhCCCCCe
Q 039073           99 ------------------------------------------------------------LSTSVAHALSYLHHDCTLSI  118 (257)
Q Consensus        99 ------------------------------------------------------------l~~~i~~~l~~LH~~~~~~i  118 (257)
                                                                                  ++.|++.||.|||++   ++
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~i  195 (343)
T 1luf_A          119 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KF  195 (343)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred             EccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence                                                                        345899999999999   99


Q ss_pred             EeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhc
Q 039073          119 VHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYT  198 (257)
Q Consensus       119 ~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~  198 (257)
                      +|+||||+||+++.++.++|+|||++..........           ......++..|+|              ||...+
T Consensus       196 vH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~-----------~~~~~~~t~~y~a--------------PE~~~~  250 (343)
T 1luf_A          196 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK-----------ADGNDAIPIRWMP--------------PESIFY  250 (343)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC---------------CCBCGGGCC--------------HHHHHH
T ss_pred             ecCCCCcceEEECCCCeEEEeecCCCcccccCcccc-----------ccCCCcccceecC--------------hhhhcc
Confidence            999999999999999999999999987653221100           0122457888999              555555


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          199 MVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       199 ~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ..++.++|+||||+++|+|++ |..||.+.
T Consensus       251 ~~~~~~~Di~slG~il~el~t~g~~p~~~~  280 (343)
T 1luf_A          251 NRYTTESDVWAYGVVLWEIFSYGLQPYYGM  280 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             CCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence            667889999999999999999 99999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.94  E-value=1.5e-26  Score=211.02  Aligned_cols=152  Identities=28%  Similarity=0.442  Sum_probs=115.9

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccH----------HHHHHHHHHHHH--------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDS----------AFVKSFQNEAHV--------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~----------~~~~~~~~e~~~--------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++........          ...+.+.+|+.+              
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            4688999999999999999999664 688999999976432211          123455566655              


Q ss_pred             -------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC---CeEE
Q 039073           99 -------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL---EAFV  138 (257)
Q Consensus        99 -------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~---~~~l  138 (257)
                                                           +..|++.||.|||++   +++||||||+||+++.++   .++|
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl  190 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKI  190 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEE
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEE
Confidence                                                 344899999999999   999999999999998776   6899


Q ss_pred             eeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHH
Q 039073          139 ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL  218 (257)
Q Consensus       139 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell  218 (257)
                      +|||++........              .....||+.|+|||++              . ..++.++||||+||++|+|+
T Consensus       191 ~Dfg~a~~~~~~~~--------------~~~~~gt~~y~aPE~~--------------~-~~~~~~~DiwslG~il~~ll  241 (504)
T 3q5i_A          191 VDFGLSSFFSKDYK--------------LRDRLGTAYYIAPEVL--------------K-KKYNEKCDVWSCGVIMYILL  241 (504)
T ss_dssp             CCCTTCEECCTTSC--------------BCCCCSCTTTCCHHHH--------------T-TCBCTHHHHHHHHHHHHHHH
T ss_pred             EECCCCEEcCCCCc--------------cccccCCcCCCCHHHh--------------c-cCCCchHHHHHHHHHHHHHH
Confidence            99999986543221              1234689999995554              3 23688999999999999999


Q ss_pred             hCCCCCccc
Q 039073          219 MGTHPGELL  227 (257)
Q Consensus       219 ~G~~Pf~~~  227 (257)
                      +|+.||.+.
T Consensus       242 ~g~~pf~~~  250 (504)
T 3q5i_A          242 CGYPPFGGQ  250 (504)
T ss_dssp             HSSCSSCCS
T ss_pred             hCCCCCCCC
Confidence            999999864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.93  E-value=7.7e-27  Score=206.75  Aligned_cols=158  Identities=22%  Similarity=0.294  Sum_probs=119.5

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +|+.||||++........  .+.+.+|+.+                         
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRP--VDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSC--HHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccch--HHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            568999999999999999999664 699999999976433221  2344455554                         


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE----cCCCCeEEeeccC
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL----DSNLEAFVADFGT  143 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill----~~~~~~~l~dfg~  143 (257)
                                                     +..|++.||.|||++   +++||||||+||++    +.++.++|+|||+
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~  162 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence                                           344899999999999   99999999999999    7777899999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                      +........              .....||..|+|||++.......      .....++.++|||||||++|||++|+.|
T Consensus       163 a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~------~~~~~~~~~~DiwSlG~il~el~tg~~P  222 (396)
T 4eut_A          163 ARELEDDEQ--------------FVSLYGTEEYLHPDMYERAVLRK------DHQKKYGATVDLWSIGVTFYHAATGSLP  222 (396)
T ss_dssp             CEECCCGGG--------------SSCSSSCCTTCCHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ceEccCCCc--------------cccccCCccccCHHHhhcccccc------ccccCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            976543221              12246899999987765432110      0012346799999999999999999999


Q ss_pred             Cccc
Q 039073          224 GELL  227 (257)
Q Consensus       224 f~~~  227 (257)
                      |...
T Consensus       223 f~~~  226 (396)
T 4eut_A          223 FRPF  226 (396)
T ss_dssp             EECT
T ss_pred             CCCC
Confidence            9753

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=7.2e-26  Score=191.56  Aligned_cols=155  Identities=27%  Similarity=0.400  Sum_probs=119.5

Q ss_pred             hccccccce-eeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKY-CIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        44 ~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      ..++|.+.. .||+|+||.||+|...   +++.||+|+++...  .....+.+.+|+.++                    
T Consensus         7 ~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   84 (287)
T 1u59_A            7 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEAL   84 (287)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSE
T ss_pred             cHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCc
Confidence            356677776 9999999999999643   57789999998643  233355666676653                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     +.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~  161 (287)
T 1u59_A           85 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG  161 (287)
T ss_dssp             EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred             EEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence                                           34899999999999   99999999999999999999999999988664


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......          ......++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||...
T Consensus       162 ~~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  217 (287)
T 1u59_A          162 ADDSYYT----------ARSAGKWPLKWYA--------------PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  217 (287)
T ss_dssp             TCSCEEC----------CCCSSCCCGGGCC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cCcceee----------ccccccccccccC--------------HHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            3221100          0122346788999              455555556889999999999999998 99999864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.93  E-value=4.7e-26  Score=194.90  Aligned_cols=148  Identities=28%  Similarity=0.444  Sum_probs=112.3

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      ..++|++.+.||+|+||.||+|... ++.||+|++....     ..+.+.+|+.++                        
T Consensus         6 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e   79 (307)
T 2eva_A            6 DYKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES-----ERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVME   79 (307)
T ss_dssp             CGGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT-----HHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEE
T ss_pred             CHhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh-----HHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEE
Confidence            3568999999999999999999875 7789999996432     134455555542                        


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-eEEeeccCccccccC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-AFVADFGTARLLHVD  150 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-~~l~dfg~~~~~~~~  150 (257)
                                                  +.|++.|+.|||+.+..+++|+||||+||+++.++. ++|+|||++......
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~  159 (307)
T 2eva_A           80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH  159 (307)
T ss_dssp             CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred             cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence                                        348999999999932239999999999999998887 799999998754321


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .                ....||..|+|              ||...+..++.++||||||+++|+|++|+.||+..
T Consensus       160 ~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  206 (307)
T 2eva_A          160 M----------------TNNKGSAAWMA--------------PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI  206 (307)
T ss_dssp             ---------------------CCTTSSC--------------HHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred             c----------------ccCCCCCceEC--------------hhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence            1                12358899999              55566666789999999999999999999999753

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.93  E-value=4.6e-26  Score=192.00  Aligned_cols=152  Identities=22%  Similarity=0.354  Sum_probs=117.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccH---HHHHHHHHHHHH----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDS---AFVKSFQNEAHV----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~---~~~~~~~~e~~~----------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||+|++........   ...+.+.+|+.+                      
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV   83 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence            367999999999999999999765 799999999875432211   012345555554                      


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC----CeEEeeccCcc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL----EAFVADFGTAR  145 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~----~~~l~dfg~~~  145 (257)
                                                   +..|++.|+.|||++   +++|+||+|+||+++.++    .++|+|||.+.
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           84 VLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence                                         344899999999999   999999999999998877    79999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .......              .....|++.|+|              ||...+..++.++|+||+|+++|+|++|+.||.
T Consensus       161 ~~~~~~~--------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  212 (283)
T 3bhy_A          161 KIEAGNE--------------FKNIFGTPEFVA--------------PEIVNYEPLGLEADMWSIGVITYILLSGASPFL  212 (283)
T ss_dssp             ECC----------------------CCCGGGCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             eccCCCc--------------ccccCCCcCccC--------------cceecCCCCCcchhhhhHHHHHHHHHHCCCCCC
Confidence            6532211              122457889999              555556667899999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       213 ~~  214 (283)
T 3bhy_A          213 GE  214 (283)
T ss_dssp             CS
T ss_pred             Cc
Confidence            64

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.93  E-value=1.8e-26  Score=196.31  Aligned_cols=158  Identities=23%  Similarity=0.380  Sum_probs=118.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|... +++.||+|++.......   .+.+..|+.+                       
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   92 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE---LEDYIVEIEILATCDHPYIVKLLGAYYHDGKLW   92 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CC---HHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEE
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHH---HHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEE
Confidence            45688999999999999999999765 68999999987543222   2344555544                       


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++.....
T Consensus        93 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (302)
T 2j7t_A           93 IMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK  169 (302)
T ss_dssp             EEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccc
Confidence                                         344899999999999   999999999999999999999999998754321


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....             .....|+..|+|||++...         ...+..++.++|+||||+++|+|++|+.||....
T Consensus       170 ~~~~-------------~~~~~~~~~y~aPE~~~~~---------~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  226 (302)
T 2j7t_A          170 TLQK-------------RDSFIGTPYWMAPEVVMCE---------TMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN  226 (302)
T ss_dssp             HHHC------------------CCGGGCCHHHHHHH---------HTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             cccc-------------cccccCChhhcCCeeeccc---------cCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence            1100             1224688999997766421         1134456889999999999999999999998643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.93  E-value=2.1e-26  Score=215.37  Aligned_cols=149  Identities=28%  Similarity=0.424  Sum_probs=112.6

Q ss_pred             eeeeecCceeEEEEEe---CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------------
Q 039073           52 YCIGTGGYGSVYKAEL---PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------------   99 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------------   99 (257)
                      +.||+|+||.||+|..   .+++.||||+++..... ....+.+.+|+.++                             
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND-PALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGC-GGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCC
Confidence            4799999999999943   34678999999765332 22245666776663                             


Q ss_pred             ---------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073          100 ---------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus       100 ---------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                           +.||+.||.|||++   +|+||||||+||+++.++.++|+|||++...........   
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~---  527 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK---  527 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc---
Confidence                                 34899999999999   999999999999999999999999999986643221100   


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                             ......++..|+|              ||.+.+..++.++|||||||++|||++ |+.||.+..
T Consensus       528 -------~~~~~~~t~~y~A--------------PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  577 (635)
T 4fl3_A          528 -------AQTHGKWPVKWYA--------------PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  577 (635)
T ss_dssp             --------------CGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             -------cccCCCCceeeeC--------------hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                   0122346778999              666666678899999999999999998 999998643

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=3.3e-26  Score=196.81  Aligned_cols=165  Identities=26%  Similarity=0.416  Sum_probs=117.9

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH---------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH---------------   97 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~---------------   97 (257)
                      ..+++.++....++|++.+.||+|+||.||+|.. .+++.||||++........    .+.+|+.               
T Consensus        12 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~----~~~~e~~~l~~l~~h~~i~~~~   87 (326)
T 2x7f_A           12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEE----EIKQEINMLKKYSHHRNIATYY   87 (326)
T ss_dssp             ----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTH----HHHHHHHHHHHHCCSTTBCCEE
T ss_pred             hhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHH----HHHHHHHHHHhccCCCCeeeee
Confidence            3455666677889999999999999999999966 5789999999865433222    2222222               


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC
Q 039073           98 ---------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS  132 (257)
Q Consensus        98 ---------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~  132 (257)
                                                                   .+..|++.||.|||+.   +++|+||+|+||+++.
T Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~  164 (326)
T 2x7f_A           88 GAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTE  164 (326)
T ss_dssp             EEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECT
T ss_pred             eEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcC
Confidence                                                         2455899999999999   9999999999999999


Q ss_pred             CCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHH
Q 039073          133 NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGV  212 (257)
Q Consensus       133 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~  212 (257)
                      ++.++|+|||++.........             .....|+..|+|||++....         ..+..++.++|+|||||
T Consensus       165 ~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~~~~~y~aPE~~~~~~---------~~~~~~~~~~Di~slG~  222 (326)
T 2x7f_A          165 NAEVKLVDFGVSAQLDRTVGR-------------RNTFIGTPYWMAPEVIACDE---------NPDATYDFKSDLWSLGI  222 (326)
T ss_dssp             TCCEEECCCTTTC--------------------------CCGGGCCHHHHC-----------------CCTTHHHHHHHH
T ss_pred             CCCEEEeeCcCceecCcCccc-------------cccccCCccccChhhhcccc---------ccCcCCCccchHHHHHH
Confidence            999999999998765322111             12246899999977664221         11344688999999999


Q ss_pred             HHHHHHhCCCCCccc
Q 039073          213 VALKVLMGTHPGELL  227 (257)
Q Consensus       213 ~l~ell~G~~Pf~~~  227 (257)
                      ++|+|++|+.||...
T Consensus       223 il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          223 TAIEMAEGAPPLCDM  237 (326)
T ss_dssp             HHHHHHHSSCTTTTS
T ss_pred             HHHHHHhCCCCCCCC
Confidence            999999999999754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.93  E-value=2.5e-26  Score=196.76  Aligned_cols=163  Identities=21%  Similarity=0.318  Sum_probs=114.0

Q ss_pred             ccccccc-eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIK-YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        45 ~~~~~~~-~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .++|++. +.||+|+||.||+|.. .+++.||||++.......   .+.+.+|+.+                        
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~   87 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI---RSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY   87 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCC---HHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchh---HHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence            4678884 7899999999999965 479999999997543222   2334444444                        


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccCcccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGTARLL  147 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~~~~~  147 (257)
                                                  +..|++.||.|||++   +++||||||+||+++.++.   ++|+|||++...
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~  164 (316)
T 2ac3_A           88 LVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI  164 (316)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred             EEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence                                        344899999999999   9999999999999987765   999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .........      .........||..|+|||++.....         ....++.++||||+||++|+|++|+.||.+.
T Consensus       165 ~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~---------~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  229 (316)
T 2ac3_A          165 KLNGDCSPI------STPELLTPCGSAEYMAPEVVEAFSE---------EASIYDKRCDLWSLGVILYILLSGYPPFVGR  229 (316)
T ss_dssp             -----------------------CCSGGGCCHHHHHHTSH---------HHHHHTTTHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             ccCCccccc------cccccccccCCcCccChHHhhcccc---------cccCCCcccccHhHHHHHHHHHHCCCCCccc
Confidence            432211100      0011123468999999776643210         0123578999999999999999999999865


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       230 ~  230 (316)
T 2ac3_A          230 C  230 (316)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.93  E-value=1.9e-26  Score=202.79  Aligned_cols=147  Identities=24%  Similarity=0.297  Sum_probs=110.6

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------------   98 (257)
                      +...+.||+|+||.||+|.. .+|+.||+|+++....   ...+.+.+|+.+                            
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~  167 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEY  167 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            34467899999999999965 5799999999976432   223456666655                            


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE--cCCCCeEEeeccCccccccCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL--DSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill--~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                              +..|++.||.|||+.   +++||||||+||++  +.++.++|+|||++........
T Consensus       168 ~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~  244 (373)
T 2x4f_A          168 VDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK  244 (373)
T ss_dssp             CTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc
Confidence                                    344899999999999   99999999999999  5667899999999886543221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .              ....||+.|+|              ||.+.+..++.++|||||||++|||++|+.||.+..
T Consensus       245 ~--------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  292 (373)
T 2x4f_A          245 L--------------KVNFGTPEFLA--------------PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN  292 (373)
T ss_dssp             C--------------CCCCSSCTTCC--------------HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             c--------------ccccCCCcEeC--------------hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            1              22458999999              555555557889999999999999999999998643

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.93  E-value=4e-26  Score=193.17  Aligned_cols=149  Identities=29%  Similarity=0.460  Sum_probs=113.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|.+.+.||+|+||.||+|.. .++..||+|++........  .+.+.+|+.+                         
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   98 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVP--MEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV   98 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSC--HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchh--HHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence            46799999999999999999965 4689999999876532221  2344444444                         


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCcc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~  145 (257)
                                                    ++.|++.||.|||+.   +++|+||||+||++   +.++.++|+|||++.
T Consensus        99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A           99 METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence                                          445899999999999   99999999999999   456789999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........              ....||..|+|||++              . ..++.++|+||+|+++|+|++|+.||.
T Consensus       176 ~~~~~~~~--------------~~~~~t~~y~aPE~~--------------~-~~~~~~~Di~slG~il~~ll~g~~pf~  226 (285)
T 3is5_A          176 LFKSDEHS--------------TNAAGTALYMAPEVF--------------K-RDVTFKCDIWSAGVVMYFLLTGCLPFT  226 (285)
T ss_dssp             C------------------------CTTGGGCCHHHH--------------T-TCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCcccC--------------cCcccccCcCChHHh--------------c-cCCCcccCeehHHHHHHHHHhCCCCCC
Confidence            65432211              224688999996654              2 235789999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      +.
T Consensus       227 ~~  228 (285)
T 3is5_A          227 GT  228 (285)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.93  E-value=3.9e-26  Score=192.20  Aligned_cols=147  Identities=28%  Similarity=0.432  Sum_probs=112.0

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ....++|++.+.||+|+||.||++... |+.||+|++.....     .+.+.+|+.+                       
T Consensus        17 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (278)
T 1byg_A           17 ALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT-----AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL   90 (278)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CC
T ss_pred             cCChhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchhH-----HHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCce
Confidence            445788999999999999999999874 78999999975421     1233333332                       


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~  167 (278)
T 1byg_A           91 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEA  167 (278)
T ss_dssp             EEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC----
T ss_pred             EEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccc
Confidence                                           455899999999999   9999999999999999999999999998754


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ....                ....++..|+|              ||...+..++.++|+||+|+++|+|++ |+.||..
T Consensus       168 ~~~~----------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~  217 (278)
T 1byg_A          168 SSTQ----------------DTGKLPVKWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  217 (278)
T ss_dssp             ------------------------CCTTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred             cccc----------------cCCCccccccC--------------HHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCC
Confidence            3211                11345778999              555555667889999999999999998 9999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       218 ~  218 (278)
T 1byg_A          218 I  218 (278)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.93  E-value=2.5e-26  Score=197.45  Aligned_cols=156  Identities=25%  Similarity=0.402  Sum_probs=118.2

Q ss_pred             HhhccccccceeeeecCceeEEEEEe--CCCCEEEEEEcCcccccc---HHHH------HHHH-----------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAEL--PDGKVVALKKLHQSETED---SAFV------KSFQ-----------------   93 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vaiK~~~~~~~~~---~~~~------~~~~-----------------   93 (257)
                      ....++|++.+.||+|+||.||+|..  .+|+.||+|++.......   ....      +.+.                 
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            34568899999999999999999976  468889999986432111   0000      0000                 


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           94 ---------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        94 ---------------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                       .++..+..|++.||.|||++   +++|+||||+||+++.++.++|+|
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D  163 (326)
T 1blx_A           87 RTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD  163 (326)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred             ccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence                                             01222456899999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||++........              .....|+..|+|              ||...+..++.++|+||||+++|+|++|
T Consensus       164 fg~~~~~~~~~~--------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g  215 (326)
T 1blx_A          164 FGLARIYSFQMA--------------LTSVVVTLWYRA--------------PEVLLQSSYATPVDLWSVGCIFAEMFRR  215 (326)
T ss_dssp             CCSCCCCCGGGG--------------GCCCCCCCTTCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             CcccccccCCCC--------------ccccccccceeC--------------HHHHhcCCCCcchhHHHHHHHHHHHHcC
Confidence            999875432110              123467889999              5555556678999999999999999999


Q ss_pred             CCCCcccc
Q 039073          221 THPGELLS  228 (257)
Q Consensus       221 ~~Pf~~~~  228 (257)
                      +.||.+..
T Consensus       216 ~~pf~~~~  223 (326)
T 1blx_A          216 KPLFRGSS  223 (326)
T ss_dssp             SCSCCCSS
T ss_pred             CCCCCCCC
Confidence            99998643

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.93  E-value=8.3e-26  Score=188.85  Aligned_cols=150  Identities=14%  Similarity=0.211  Sum_probs=116.2

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... ++.||+|++....... ...+.+.+|+.+                         
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (271)
T 3kmu_A            8 DFKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWST-RKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT   85 (271)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCH-HHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCE
T ss_pred             CHHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCH-HHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeE
Confidence            4678999999999999999999875 7889999997654322 223455555543                         


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLS--IVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                    ++.|++.|+.|||++   +  ++|+||||+||+++.++.+++.|||++..
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           86 LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             EEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             eeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceee
Confidence                                          455899999999998   8  99999999999999999999999887654


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ...                  ....||+.|+|||++.....           ..++.++||||||+++|+|++|+.||..
T Consensus       163 ~~~------------------~~~~~t~~y~aPE~~~~~~~-----------~~~~~~~Di~slG~il~el~~g~~p~~~  213 (271)
T 3kmu_A          163 FQS------------------PGRMYAPAWVAPEALQKKPE-----------DTNRRSADMWSFAVLLWELVTREVPFAD  213 (271)
T ss_dssp             TSC------------------TTCBSCGGGSCHHHHHSCGG-----------GSCHHHHHHHHHHHHHHHHHHCSCTTTT
T ss_pred             ecc------------------cCccCCccccChhhhccCCC-----------CCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            221                  12457889999666543211           1123379999999999999999999986


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       214 ~  214 (271)
T 3kmu_A          214 L  214 (271)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.93  E-value=5.4e-26  Score=196.25  Aligned_cols=171  Identities=26%  Similarity=0.349  Sum_probs=117.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHH------------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSF------------------------------   92 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~------------------------------   92 (257)
                      ...++|++.+.||+|+||.||+|.. +++.||||++.............+                              
T Consensus        10 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~   88 (336)
T 3g2f_A           10 LDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL   88 (336)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred             cChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence            4568999999999999999999976 688999999864321110000000                              


Q ss_pred             --------------H-------HHHHHHHHHHHHHHHHHhhCCC------CCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           93 --------------Q-------NEAHVLSTSVAHALSYLHHDCT------LSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        93 --------------~-------~e~~~l~~~i~~~l~~LH~~~~------~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                    .       .++..++.|++.||.|||+...      .+++||||||+||+++.++.++|+|||++.
T Consensus        89 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~  168 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM  168 (336)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeecccee
Confidence                          0       1122256699999999997632      289999999999999999999999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ............     .........||..|+|||++.+.....       ....++.++|||||||++|||++|..||.
T Consensus       169 ~~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~-------~~~~~~~~~DiwslG~il~ell~g~~p~~  236 (336)
T 3g2f_A          169 RLTGNRLVRPGE-----EDNAAISEVGTIRYMAPEVLEGAVNLR-------DXESALKQVDMYALGLIYWEIFMRCTDLF  236 (336)
T ss_dssp             ECSSSSCC--------------CCTTSCGGGCCHHHHTTCCCGG-------GHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred             ecccccccCccc-----cccccccCCCccceeCchhhcCCcccc-------cccccccccchHHHHHHHHHHHhcCCcCC
Confidence            764332111000     000112346899999987775432211       01224568999999999999999977764


Q ss_pred             c
Q 039073          226 L  226 (257)
Q Consensus       226 ~  226 (257)
                      .
T Consensus       237 ~  237 (336)
T 3g2f_A          237 P  237 (336)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.93  E-value=2.4e-26  Score=194.40  Aligned_cols=157  Identities=25%  Similarity=0.399  Sum_probs=110.0

Q ss_pred             hccccccceeeeecCceeEEEEEe--CCCC--EEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL--PDGK--VVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~--~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      ..++|++.+.||+|+||.||+|.+  .+++  .||+|++...........+.+.+|+..+                    
T Consensus        16 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   95 (291)
T 1u46_A           16 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPM   95 (291)
T ss_dssp             CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSC
T ss_pred             chhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCc
Confidence            357899999999999999999964  2333  6899999765443334455666666653                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     ..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++....
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  172 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALP  172 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccc
Confidence                                           33899999999999   99999999999999999999999999987664


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......          ......++..|+||              |...+..++.++|+||||+++|+|++ |+.||.+.
T Consensus       173 ~~~~~~~----------~~~~~~~~~~y~aP--------------E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  228 (291)
T 1u46_A          173 QNDDHYV----------MQEHRKVPFAWCAP--------------ESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  228 (291)
T ss_dssp             C-CCEEE----------C-----CCGGGCCH--------------HHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccchh----------hhccCCCCceeeCc--------------hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence            3221100          01223567789995              44445556789999999999999999 99999764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.9e-26  Score=198.93  Aligned_cols=160  Identities=19%  Similarity=0.260  Sum_probs=117.1

Q ss_pred             ccccccceeeeecCceeEEEEEeCC---------CCEEEEEEcCccccccHH--HHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD---------GKVVALKKLHQSETEDSA--FVK-----------------------   90 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vaiK~~~~~~~~~~~--~~~-----------------------   90 (257)
                      .++|++.+.||+|+||.||+|....         ++.||+|++........+  ..+                       
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~  120 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIP  120 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCcc
Confidence            4789999999999999999997653         788999998654111000  000                       


Q ss_pred             -------------------------HH----------HHHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-
Q 039073           91 -------------------------SF----------QNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-  134 (257)
Q Consensus        91 -------------------------~~----------~~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-  134 (257)
                                               .+          ..++..++.|++.||.|||++   +++||||||+||+++.++ 
T Consensus       121 ~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~~~  197 (352)
T 2jii_A          121 TCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPEDQ  197 (352)
T ss_dssp             CCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETTEE
T ss_pred             chhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCCCC
Confidence                                     00          012233566999999999999   999999999999999988 


Q ss_pred             -CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          135 -EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       135 -~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                       .++|+|||++............      .........||+.|+|              ||...+..++.++||||||++
T Consensus       198 ~~~kl~Dfg~a~~~~~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~i  257 (352)
T 2jii_A          198 SQVTLAGYGFAFRYCPSGKHVAY------VEGSRSPHEGDLEFIS--------------MDLHKGCGPSRRSDLQSLGYC  257 (352)
T ss_dssp             EEEEECCGGGCBCSSGGGCCCCC------CTTSSCTTCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHH
T ss_pred             ceEEEecCcceeeccCCCccccc------cccccccccCCccccC--------------HHHHccCCCCchhhHHHHHHH
Confidence             8999999999866433221110      0001123468999999              555666667889999999999


Q ss_pred             HHHHHhCCCCCccc
Q 039073          214 ALKVLMGTHPGELL  227 (257)
Q Consensus       214 l~ell~G~~Pf~~~  227 (257)
                      +|+|++|+.||...
T Consensus       258 l~el~~g~~pf~~~  271 (352)
T 2jii_A          258 MLKWLYGFLPWTNC  271 (352)
T ss_dssp             HHHHHHSCCTTGGG
T ss_pred             HHHHHhCCCCcccC
Confidence            99999999999865

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.93  E-value=5.4e-26  Score=192.08  Aligned_cols=157  Identities=23%  Similarity=0.392  Sum_probs=108.2

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH--------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE--------------------------   95 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e--------------------------   95 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||+|++......... .+.+..+                          
T Consensus         4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQ-KRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHH-HHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             ccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHH-HHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            3468899999999999999999966 57899999999754322211 1111111                          


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           96 ----------------------------AHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        96 ----------------------------~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                  +..+..|++.|+.|||++  .+++|+||||+||+++.++.++|+|||++...
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYL  160 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence                                        112455899999999973  18999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ......              ....||+.|+|||++...          ..+..++.++|+||+|+++|+|++|+.||+.
T Consensus       161 ~~~~~~--------------~~~~~t~~y~aPE~~~~~----------~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (290)
T 3fme_A          161 VDDVAK--------------DIDAGCKPYMAPERINPE----------LNQKGYSVKSDIWSLGITMIELAILRFPYDS  215 (290)
T ss_dssp             -----------------------CCCCCCSCHHHHSCC----------TTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             cccccc--------------cccCCCccccChhhcChh----------hcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence            432211              123588999996654211          1333468899999999999999999999975

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.93  E-value=3.8e-26  Score=199.35  Aligned_cols=149  Identities=28%  Similarity=0.418  Sum_probs=118.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||+|++....  .....+.+.+|+.+                         
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence            578999999999999999999664 78999999987542  22234455555544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                +..+++.|+.|||+ +   +++|+||||+||+++.++.++|+|||++.......
T Consensus       110 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  186 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  186 (360)
T ss_dssp             ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC
T ss_pred             EECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECCCCccccccc
Confidence                                      44589999999998 5   89999999999999999999999999987543221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .               ....||+.|+|              ||...+..++.++||||+||++|+|++|+.||...
T Consensus       187 ~---------------~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          187 A---------------NSFVGTRSYMS--------------PERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             -------------------CCCCTTCC--------------HHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             c---------------cCCCCCCCeEC--------------HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            1               22468899999              55566666788999999999999999999999753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=192.58  Aligned_cols=151  Identities=31%  Similarity=0.463  Sum_probs=113.2

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------------   98 (257)
                      ....++|++.+.||+|+||.||+|... +|+.||+|++......     +.+.+|+.+                      
T Consensus        25 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   99 (314)
T 3com_A           25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDL-----QEIIKEISIMQQCDSPHVVKYYGSYFKNTDL   99 (314)
T ss_dssp             -----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCC-----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             hcchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHH-----HHHHHHHHHHHhCCCCCCccEEEEEEeCCEE
Confidence            345778999999999999999999664 6999999998754321     223333333                      


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..+++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+....
T Consensus       100 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  176 (314)
T 3com_A          100 WIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLT  176 (314)
T ss_dssp             EEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECB
T ss_pred             EEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhh
Confidence                                          455899999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....             .....|+..|+|              ||...+..++.++|+||||+++|+|++|+.||...
T Consensus       177 ~~~~~-------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          177 DTMAK-------------RNTVIGTPFWMA--------------PEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             TTBSC-------------BCCCCSCGGGCC--------------HHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             hhccc-------------cCccCCCCCccC--------------hhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            22111             123468889999              55555566788999999999999999999999764

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.93  E-value=2.7e-26  Score=194.56  Aligned_cols=160  Identities=27%  Similarity=0.403  Sum_probs=118.2

Q ss_pred             HHHhhccccccce-eeeecCceeEEEEEe---CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           40 DLINATEEFHIKY-CIGTGGYGSVYKAEL---PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~-~lg~G~~g~V~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      ++....++|++.+ .||+|+||.||+|..   .+++.||||++....... ...+.+.+|+.+                 
T Consensus        10 ~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   88 (291)
T 1xbb_A           10 EVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP-ALKDELLAEANVMQQLDNPYIVRMIGICE   88 (291)
T ss_dssp             -CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C-HHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             eeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            3444567899988 999999999999943   347789999997653322 234556666665                 


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++.
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A           89 AESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence                                             344899999999999   99999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf  224 (257)
                      .........          .......++..|+|              ||...+..++.++|+||||+++|+|++ |+.||
T Consensus       166 ~~~~~~~~~----------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~  221 (291)
T 1xbb_A          166 ALRADENYY----------KAQTHGKWPVKWYA--------------PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY  221 (291)
T ss_dssp             ECCTTCSEE----------EC----CCCGGGCC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             eeccCCCcc----------cccccCCCCceeeC--------------hHHhccCCCChhhhHHHHHHHHHHHHhcCCCCC
Confidence            654322110          00112345678999              455555556789999999999999999 99999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       222 ~~~  224 (291)
T 1xbb_A          222 RGM  224 (291)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.93  E-value=8.2e-26  Score=197.69  Aligned_cols=148  Identities=20%  Similarity=0.327  Sum_probs=112.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHH---------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEA---------------------------   96 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~---------------------------   96 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++.......    ..+..|+                           
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~   93 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT----EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD   93 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHH----HHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccch----hhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence            56899999999999999999965 578999999987532211    1122222                           


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-----
Q 039073           97 ----------------------------------------HVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-----  131 (257)
Q Consensus        97 ----------------------------------------~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-----  131 (257)
                                                              ..++.|++.||.|||+++  +++||||||+||+++     
T Consensus        94 ~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~  171 (373)
T 1q8y_A           94 HFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSP  171 (373)
T ss_dssp             EEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETT
T ss_pred             HhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCC
Confidence                                                    124458999999999842  899999999999995     


Q ss_pred             -CCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          132 -SNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       132 -~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                       ..+.++|+|||++.......                ....||+.|+|              ||...+..++.++|||||
T Consensus       172 ~~~~~~kl~Dfg~a~~~~~~~----------------~~~~~t~~y~a--------------PE~~~~~~~~~~~Di~sl  221 (373)
T 1q8y_A          172 ENLIQIKIADLGNACWYDEHY----------------TNSIQTREYRS--------------PEVLLGAPWGCGADIWST  221 (373)
T ss_dssp             TTEEEEEECCCTTCEETTBCC----------------CSCCSCGGGCC--------------HHHHHTCCCCTHHHHHHH
T ss_pred             cCcceEEEcccccccccCCCC----------------CCCCCCccccC--------------cHHHhCCCCCchHhHHHH
Confidence             33479999999987653221                12357899999              555666667899999999


Q ss_pred             HHHHHHHHhCCCCCcccc
Q 039073          211 GVVALKVLMGTHPGELLS  228 (257)
Q Consensus       211 G~~l~ell~G~~Pf~~~~  228 (257)
                      ||++|||++|+.||.+..
T Consensus       222 G~il~el~~g~~pf~~~~  239 (373)
T 1q8y_A          222 ACLIFELITGDFLFEPDE  239 (373)
T ss_dssp             HHHHHHHHHSSCCC----
T ss_pred             HHHHHHHHhCCCCCCCCc
Confidence            999999999999998643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.93  E-value=1.8e-25  Score=189.74  Aligned_cols=161  Identities=23%  Similarity=0.272  Sum_probs=121.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccc------cHHHHHHHHHHHHH----------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETE------DSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~~~~e~~~----------------   98 (257)
                      ....++|++.+.||+|+||.||+|... +|+.||||++......      .....+.+.+|+.+                
T Consensus        13 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (298)
T 1phk_A           13 HGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDT   92 (298)
T ss_dssp             --CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             cchhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeee
Confidence            345689999999999999999999664 6889999998654311      11223345555554                


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg  169 (298)
T 1phk_A           93 YETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFG  169 (298)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             eccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEeccc
Confidence                                                334899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      .+........              .....|+..|+|||++.....        .....++.++|+||+|+++|+|++|+.
T Consensus       170 ~~~~~~~~~~--------------~~~~~~~~~y~aPE~~~~~~~--------~~~~~~~~~~Di~slG~~l~~l~~g~~  227 (298)
T 1phk_A          170 FSCQLDPGEK--------------LREVCGTPSYLAPEIIECSMN--------DNHPGYGKEVDMWSTGVIMYTLLAGSP  227 (298)
T ss_dssp             TCEECCTTCC--------------BCCCCSCGGGCCHHHHHHHHC--------TTSCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             chhhcCCCcc--------------cccccCCccccCHHHhccccc--------cccccCCcccccHhHHHHHHHHHHCCC
Confidence            9876543221              122468899999777643311        012346889999999999999999999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||...
T Consensus       228 p~~~~  232 (298)
T 1phk_A          228 PFWHR  232 (298)
T ss_dssp             SSCCS
T ss_pred             CCcCc
Confidence            99754

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.93  E-value=2.1e-26  Score=193.70  Aligned_cols=153  Identities=29%  Similarity=0.482  Sum_probs=119.2

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++....... ...+.+..|+.+                        
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   82 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCH-HHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence            4678999999999999999999664 78999999997654322 224455566555                        


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCC-----eEeeCCCCCCeEEcCCCCeEEee
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLS-----IVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~-----i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                                       +..|++.|+.|||+.   +     ++|+||+|+||+++.++.++|+|
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~d  159 (279)
T 2w5a_A           83 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGD  159 (279)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECC
T ss_pred             EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEec
Confidence                                             334899999999998   7     99999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||.+........             ......|+..|+|              ||...+..++.++|+||||+++|+|++|
T Consensus       160 fg~~~~~~~~~~-------------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g  212 (279)
T 2w5a_A          160 FGLARILNHDTS-------------FAKTFVGTPYYMS--------------PEQMNRMSYNEKSDIWSLGCLLYELCAL  212 (279)
T ss_dssp             CCHHHHC---CH-------------HHHHHHSCCTTCC--------------HHHHHCC-CCHHHHHHHHHHHHHHHHHS
T ss_pred             Cchheeeccccc-------------cccccCCCccccC--------------hHHhccCCCCchhhHHHHHHHHHHHHHC
Confidence            999876532110             0122467889999              5555555678899999999999999999


Q ss_pred             CCCCccc
Q 039073          221 THPGELL  227 (257)
Q Consensus       221 ~~Pf~~~  227 (257)
                      +.||...
T Consensus       213 ~~p~~~~  219 (279)
T 2w5a_A          213 MPPFTAF  219 (279)
T ss_dssp             SCSSCCS
T ss_pred             CCCCccc
Confidence            9999864

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.93  E-value=6.6e-26  Score=211.37  Aligned_cols=156  Identities=26%  Similarity=0.385  Sum_probs=115.4

Q ss_pred             hccccccce-eeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKY-CIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        44 ~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ..+++.+.. .||+|+||.||+|...   ++..||||+++......  ..+.+.+|+.+                     
T Consensus       333 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~  410 (613)
T 2ozo_A          333 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA--DTEEMMREAQIMHQLDNPYIVRLIGVCQAEAL  410 (613)
T ss_dssp             CTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSST--THHHHHHHHHHHTTCCCTTBCCEEEEEESSSE
T ss_pred             cccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChH--HHHHHHHHHHHHHhCCCCCEeeEEEEeccCCe
Confidence            344555555 8999999999999542   46679999998653221  24566666665                     


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||+++...
T Consensus       411 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~  487 (613)
T 2ozo_A          411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALG  487 (613)
T ss_dssp             EEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred             EEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence                                          344899999999999   99999999999999999999999999998654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......          ......++..|+|              ||.+.+..++.++|||||||++|||++ |+.||.+.
T Consensus       488 ~~~~~~~----------~~~~~~~~~~y~A--------------PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  543 (613)
T 2ozo_A          488 ADDSYYT----------ARSAGKWPLKWYA--------------PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  543 (613)
T ss_dssp             ------------------------CCTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCCceee----------eccCCCCccceeC--------------HhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            3221100          0112335678999              666666678899999999999999998 99999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      .
T Consensus       544 ~  544 (613)
T 2ozo_A          544 K  544 (613)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.93  E-value=3e-26  Score=194.89  Aligned_cols=152  Identities=22%  Similarity=0.352  Sum_probs=115.2

Q ss_pred             ccccccceeeeecCceeEEEEE-----eCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAE-----LPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||+|.     ..+++.||+|++.......  ..+.+.+|+.+                     
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN--HIADLKKEIEILRNLYHENIVKYKGICTEDGG   97 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----C--CHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccch--hHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence            4569999999999999999997     3468899999997543221  12345555544                     


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++.
T Consensus        98 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             ceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence                                             344899999999999   99999999999999999999999999988


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      .........          .......||..|+|              ||...+..++.++|+||+|+++|+|++|..|+.
T Consensus       175 ~~~~~~~~~----------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  230 (302)
T 4e5w_A          175 AIETDKEYY----------TVKDDRDSPVFWYA--------------PECLMQSKFYIASDVWSFGVTLHELLTYCDSDS  230 (302)
T ss_dssp             ECCTTCCEE----------ECCCCTTCCGGGCC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             cccCCCcce----------eccCCCCCCccccC--------------CeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence            664332110          00122457788999              555555556789999999999999999999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.93  E-value=6.4e-26  Score=206.36  Aligned_cols=150  Identities=27%  Similarity=0.422  Sum_probs=112.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... ++..||+|++......... ...+.+|+.+                         
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSS-NSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CT-THHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchH-HHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            567999999999999999999664 7899999998754322111 2344455544                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC---CCeEEeeccCcccccc
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN---LEAFVADFGTARLLHV  149 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~---~~~~l~dfg~~~~~~~  149 (257)
                                                +..|++.||.|||++   +++||||||+||+++..   +.++|+|||++.....
T Consensus       115 ~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~  191 (494)
T 3lij_A          115 MECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN  191 (494)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence                                      445899999999999   99999999999999764   4599999999876543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              .....||+.|+|||++              . ..++.++||||+||++|+|++|++||.+.
T Consensus       192 ~~~--------------~~~~~gt~~y~aPE~l--------------~-~~~~~~~DiwslG~il~~ll~g~~pf~~~  240 (494)
T 3lij_A          192 QKK--------------MKERLGTAYYIAPEVL--------------R-KKYDEKCDVWSIGVILFILLAGYPPFGGQ  240 (494)
T ss_dssp             TBC--------------BCCCCSCTTTCCHHHH--------------T-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Ccc--------------ccccCCCcCeeCHHHH--------------c-ccCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            221              1234689999996554              2 23688999999999999999999999864

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.93  E-value=2.4e-26  Score=193.07  Aligned_cols=153  Identities=26%  Similarity=0.409  Sum_probs=112.0

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +|+.||||++...........+.+.+|+..                        
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFM   88 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEE
Confidence            4578999999999999999999765 799999999865422111123344455444                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  165 (276)
T 2h6d_A           89 VMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  165 (276)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence                                       445899999999999   99999999999999999999999999987653221


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .              .....|++.|+|||              ...+..+ +.++|+||+|+++|+|++|+.||+..
T Consensus       166 ~--------------~~~~~~~~~y~aPE--------------~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  214 (276)
T 2h6d_A          166 F--------------LRTSCGSPNYAAPE--------------VISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE  214 (276)
T ss_dssp             -------------------------CCTG--------------GGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             c--------------eecccCCccccCHH--------------HHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            1              12245788999954              4444433 57899999999999999999999753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.93  E-value=5.9e-26  Score=193.34  Aligned_cols=158  Identities=22%  Similarity=0.249  Sum_probs=118.7

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc-HHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED-SAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~-----------------------   98 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++....... ......+.+|+.+                       
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            357899999999999999999976 468899999997542211 1123445555554                       


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++...
T Consensus        83 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~  159 (305)
T 2wtk_C           83 MYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEAL  159 (305)
T ss_dssp             EEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccccc
Confidence                                           344899999999999   9999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ........           .....|+..|+|||++.....            .++.++|+||+|+++|+|++|+.||.+.
T Consensus       160 ~~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~------------~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (305)
T 2wtk_C          160 HPFAADDT-----------CRTSQGSPAFQPPEIANGLDT------------FSGFKVDIWSAGVTLYNITTGLYPFEGD  216 (305)
T ss_dssp             CTTCSSCE-----------ECCCCSCGGGCCHHHHTCCSC------------EESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             Cccccccc-----------cccCCCCCCCcChhhccCccc------------CCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            43221110           123458899999665432211            1266899999999999999999999853

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.93  E-value=4.2e-26  Score=196.58  Aligned_cols=153  Identities=29%  Similarity=0.429  Sum_probs=119.7

Q ss_pred             ccccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||.||+|..     .+++.||||++....   ....+.+.+|+.+                     
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   98 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR   98 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence            57899999999999999999973     468899999997543   2234456666655                     


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           99 ---------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        99 ---------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                       +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++.
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  175 (327)
T 3lxl_A           99 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAK  175 (327)
T ss_dssp             CEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred             ceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccce
Confidence                                             334899999999999   99999999999999999999999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ..........          ......|+..|+|              ||...+..++.++||||+|+++|+|++|..||.
T Consensus       176 ~~~~~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  231 (327)
T 3lxl_A          176 LLPLDKDYYV----------VREPGQSPIFWYA--------------PESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC  231 (327)
T ss_dssp             ECCTTCSEEE----------CSSCCCSCGGGSC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             ecccCCccce----------eeccCCccccccC--------------HHHhccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence            6643221100          0122457788999              455555556789999999999999999999996


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       232 ~~  233 (327)
T 3lxl_A          232 SP  233 (327)
T ss_dssp             SH
T ss_pred             cc
Confidence            43

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.93  E-value=4.9e-26  Score=197.85  Aligned_cols=159  Identities=21%  Similarity=0.328  Sum_probs=111.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHH---H-----HHHH------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFV---K-----SFQN------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~---~-----~~~~------------------   94 (257)
                      .++|++.+.||+|+||.||+|...    ++..+|||+............   +     .+.+                  
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            478999999999999999999664    577899999875432111000   0     1111                  


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC--Ce
Q 039073           95 ------------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL--EA  136 (257)
Q Consensus        95 ------------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~--~~  136 (257)
                                                          ++..++.|++.||.|||++   +++||||||+||+++.++  .+
T Consensus       116 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~  192 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQV  192 (345)
T ss_dssp             EEEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSE
T ss_pred             ccccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcE
Confidence                                                2223556999999999999   999999999999999887  99


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++............      .........||..|+|              ||...+..++.++|||||||++||
T Consensus       193 kL~Dfg~a~~~~~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~Di~slG~il~e  252 (345)
T 2v62_A          193 YLADYGLSYRYCPNGNHKQY------QENPRKGHNGTIEFTS--------------LDAHKGVALSRRSDVEILGYCMLR  252 (345)
T ss_dssp             EECCCTTCEESSGGGCCCCC------CCCGGGCSCSCTTTCC--------------HHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCceecccccccccc------hhccccccCCCccccC--------------HHHhcCCCCCchhhHHHHHHHHHH
Confidence            99999999876433211110      0011133568999999              566666667899999999999999


Q ss_pred             HHhCCCCCcc
Q 039073          217 VLMGTHPGEL  226 (257)
Q Consensus       217 ll~G~~Pf~~  226 (257)
                      |++|+.||..
T Consensus       253 ll~g~~pf~~  262 (345)
T 2v62_A          253 WLCGKLPWEQ  262 (345)
T ss_dssp             HHHSSCTTGG
T ss_pred             HHhCCCCccc
Confidence            9999999964

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=193.70  Aligned_cols=169  Identities=20%  Similarity=0.243  Sum_probs=107.2

Q ss_pred             HHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      +.....+|++.+.||+|+||.||+|.+ .+++.||||++.....   ...+.+.+|+..                     
T Consensus        23 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~   99 (337)
T 3ll6_A           23 VELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEE---EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGK   99 (337)
T ss_dssp             EEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSH---HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECT
T ss_pred             eeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCch---HHHHHHHHHHHHHHHhccCCChhhccccccccc
Confidence            344566899999999999999999975 4789999998854321   112233333332                     


Q ss_pred             -----------------------------------------HHHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEcCCCC
Q 039073           99 -----------------------------------------LSTSVAHALSYLHHDCTLS--IVHRDISSNNILLDSNLE  135 (257)
Q Consensus        99 -----------------------------------------l~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~~~~~  135 (257)
                                                               +..|++.||.|||+.   +  ++|+||||+||+++.++.
T Consensus       100 ~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~  176 (337)
T 3ll6_A          100 EESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGT  176 (337)
T ss_dssp             TTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSC
T ss_pred             cccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCC
Confidence                                                     445899999999998   8  999999999999999999


Q ss_pred             eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ++|+|||++............. .............||+.|+|||++...           .+..++.++||||||+++|
T Consensus       177 ~kl~Dfg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~y~aPE~~~~~-----------~~~~~~~~~Dv~slG~il~  244 (337)
T 3ll6_A          177 IKLCDFGSATTISHYPDYSWSA-QRRALVEEEITRNTTPMYRTPEIIDLY-----------SNFPIGEKQDIWALGCILY  244 (337)
T ss_dssp             EEBCCCTTCBCCSSCC--------------------------------CC-----------TTSCSSHHHHHHHHHHHHH
T ss_pred             EEEecCccceeccccCcccccc-cccccchhhccccCCCCcCChhhhhcc-----------ccCCCChHHhHHHHHHHHH
Confidence            9999999998764332111000 000000011234588999995554211           3444688999999999999


Q ss_pred             HHHhCCCCCccc
Q 039073          216 KVLMGTHPGELL  227 (257)
Q Consensus       216 ell~G~~Pf~~~  227 (257)
                      +|++|+.||...
T Consensus       245 el~~g~~p~~~~  256 (337)
T 3ll6_A          245 LLCFRQHPFEDG  256 (337)
T ss_dssp             HHHHSSCCC---
T ss_pred             HHHhCCCCCcch
Confidence            999999999754

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=2.1e-25  Score=193.08  Aligned_cols=155  Identities=32%  Similarity=0.407  Sum_probs=112.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-C----CCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-D----GKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +    +..||+|++....  .......+.+|+.+                    
T Consensus        42 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  119 (333)
T 1mqb_A           42 HPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK  119 (333)
T ss_dssp             CTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             ChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC
Confidence            3567888999999999999999643 2    3369999997543  22234456666655                    


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      +..|++.||.|||++   +++|+||||+||+++.++.++|+|||++..
T Consensus       120 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          120 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchh
Confidence                                            334899999999999   999999999999999999999999999886


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~  225 (257)
                      .........          ......++..|+|              ||...+..++.++|+||||+++|+|++ |+.||.
T Consensus       197 ~~~~~~~~~----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~  252 (333)
T 1mqb_A          197 LEDDPEATY----------TTSGGKIPIRWTA--------------PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  252 (333)
T ss_dssp             ------------------------CCCGGGSC--------------HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             hcccccccc----------ccCCCCccccccC--------------chhcccCCCCchhhhHHHHHHHHHHHcCCCCCcc
Confidence            543221100          0112345778999              555556667889999999999999998 999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       253 ~~  254 (333)
T 1mqb_A          253 EL  254 (333)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.93  E-value=5.2e-26  Score=195.60  Aligned_cols=155  Identities=26%  Similarity=0.369  Sum_probs=115.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccc-----cHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETE-----DSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~-----~~~~~~~~~~e~~~--------------------   98 (257)
                      .++|++.+.||+|+||.||+|.. .+++.||||++......     .......+.+|+.+                    
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            46899999999999999999965 46889999998754321     11112234555554                    


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEeeccCcc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVADFGTAR  145 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~dfg~~~  145 (257)
                                                    +..|++.||.|||++   +++|+||||+||+++.++.   ++|+|||++.
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence                                          344899999999999   9999999999999987654   9999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ......              ......||..|+|||++...           ....++.++|+|||||++|+|++|+.||.
T Consensus       166 ~~~~~~--------------~~~~~~gt~~y~aPE~~~~~-----------~~~~~~~~~Di~slG~il~~l~~g~~pf~  220 (322)
T 2ycf_A          166 ILGETS--------------LMRTLCGTPTYLAPEVLVSV-----------GTAGYNRAVDCWSLGVILFICLSGYPPFS  220 (322)
T ss_dssp             ECCCCH--------------HHHHHHSCCTTCCHHHHHHT-----------TTTTCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             eccccc--------------ccccccCCcCccCchhhccC-----------CCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence            653211              01234689999996665321           12346889999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       221 ~~  222 (322)
T 2ycf_A          221 EH  222 (322)
T ss_dssp             ST
T ss_pred             cc
Confidence            54

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.93  E-value=2.5e-25  Score=188.40  Aligned_cols=149  Identities=24%  Similarity=0.367  Sum_probs=117.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      ...|.+.+.||+|+||.||+|.. .++..||+|++....... ...+.+.+|+.+                         
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK-SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCH-HHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            44589999999999999999965 468899999987654332 234556666655                         


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEc-CCCCeEEeeccCcc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLS--IVHRDISSNNILLD-SNLEAFVADFGTAR  145 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~-~~~~~~l~dfg~~~  145 (257)
                                                    +..|++.|+.|||+.   +  ++|+||||+||+++ .++.++|+|||++.
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~  180 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence                                          344899999999998   8  99999999999998 78899999999986


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ......               .....|++.|+|||+              ..+ .++.++|+||+|+++|+|++|+.||.
T Consensus       181 ~~~~~~---------------~~~~~~t~~y~aPE~--------------~~~-~~~~~~Di~slG~~l~~l~~g~~pf~  230 (290)
T 1t4h_A          181 LKRASF---------------AKAVIGTPEFMAPEM--------------YEE-KYDESVDVYAFGMCMLEMATSEYPYS  230 (290)
T ss_dssp             GCCTTS---------------BEESCSSCCCCCGGG--------------GGT-CCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cccccc---------------cccccCCcCcCCHHH--------------Hhc-cCCCcchHHHHHHHHHHHHhCCCCCC
Confidence            432211               123468899999554              332 36889999999999999999999997


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       231 ~~  232 (290)
T 1t4h_A          231 EC  232 (290)
T ss_dssp             TC
T ss_pred             Cc
Confidence            63

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.93  E-value=1.1e-25  Score=193.46  Aligned_cols=153  Identities=23%  Similarity=0.362  Sum_probs=117.7

Q ss_pred             ccc-ccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           46 EEF-HIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        46 ~~~-~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      ++| ++.+.||+|+||.||++..     .+++.||||++....  .....+.+.+|+.++                    
T Consensus        30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (318)
T 3lxp_A           30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA--GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGA  107 (318)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTT
T ss_pred             HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc--ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCC
Confidence            445 9999999999999988843     368899999997653  223345666776663                    


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      +.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  184 (318)
T 3lxp_A          108 ASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV  184 (318)
T ss_dssp             TEEEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             ceEEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence                                            34899999999999   9999999999999999999999999999866


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .......          .......++..|+|              ||...+..++.++||||+|+++|+|++|..||...
T Consensus       185 ~~~~~~~----------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  240 (318)
T 3lxp_A          185 PEGHEYY----------RVREDGDSPVFWYA--------------PECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSP  240 (318)
T ss_dssp             CTTCSEE----------EC---CCCCGGGCC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             ccccccc----------ccccCCCCCceeeC--------------hHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccccc
Confidence            4322100          00122457788999              55555555678999999999999999999999753

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.93  E-value=8.4e-26  Score=192.66  Aligned_cols=149  Identities=28%  Similarity=0.439  Sum_probs=117.3

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||++... +|+.||+|++.......   .+.+.+|+.+                        
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR---DSSLENEIAVLKKIKHENIVTLEDIYESTTHYYL   83 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccc---hHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEE
Confidence            4578999999999999999999764 79999999997543221   2234445444                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEE---cCCCCeEEeeccCccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill---~~~~~~~l~dfg~~~~~~  148 (257)
                                                 +..|++.|+.|||+.   +++|+||||+||++   +.++.++|+|||++....
T Consensus        84 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~  160 (304)
T 2jam_A           84 VMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ  160 (304)
T ss_dssp             EECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred             EEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence                                       344899999999999   99999999999999   778899999999986432


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...               .....|++.|+|              ||...+..++.++|+||+|+++|+|++|+.||...
T Consensus       161 ~~~---------------~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          161 NGI---------------MSTACGTPGYVA--------------PEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             CBT---------------THHHHSCCCBCC--------------TTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCc---------------cccccCCCCccC--------------hHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            111               123468899999              66666666788999999999999999999999754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=5.9e-25  Score=186.43  Aligned_cols=152  Identities=30%  Similarity=0.423  Sum_probs=113.9

Q ss_pred             ccccceeeeecCceeEEEEEe-CCC---CEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAEL-PDG---KVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~-~~~---~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .|++.+.||+|+||.||+|.. .++   ..||+|++....  .....+.+.+|+.+                        
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT--EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc--cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            466779999999999999964 233   379999987533  23335566666665                        


Q ss_pred             -----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           99 -----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                   +..|++.|+.|||++   +++|+||||+||+++.++.++|+|||++.....
T Consensus       100 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  176 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD  176 (298)
T ss_dssp             EEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred             EEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence                                         334899999999999   999999999999999999999999999875432


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC-CCCCcc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG-THPGEL  226 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G-~~Pf~~  226 (257)
                      .....         ........++..|+|              ||...+..++.++|+||+|+++|+|++| .+||..
T Consensus       177 ~~~~~---------~~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~  231 (298)
T 3pls_A          177 REYYS---------VQQHRHARLPVKWTA--------------LESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH  231 (298)
T ss_dssp             GGGGC---------SCCSSCTTCGGGGSC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred             Ccccc---------cccCcCCCCCccccC--------------hhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence            21100         001123457888999              6666666678899999999999999995 555553

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=192.35  Aligned_cols=155  Identities=22%  Similarity=0.325  Sum_probs=111.2

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||+|++....   ....+.+.+|+.+                         
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC---hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            578999999999999999999765 58999999886432   2223444455443                         


Q ss_pred             --------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-CCCCeEEe
Q 039073           99 --------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-SNLEAFVA  139 (257)
Q Consensus        99 --------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-~~~~~~l~  139 (257)
                                                            ++.|++.|+.|||++   +++|+||||+||+++ .++.++|+
T Consensus        87 ~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~  163 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIG  163 (320)
T ss_dssp             ----CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEEC
T ss_pred             ccccccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEc
Confidence                                                  445899999999999   999999999999997 56689999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||++...........          ......++..|+|||++...             ..++.++|+||||+++|+|++
T Consensus       164 Dfg~~~~~~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Di~slG~il~el~~  220 (320)
T 2i6l_A          164 DFGLARIMDPHYSHKG----------HLSEGLVTKWYRSPRLLLSP-------------NNYTKAIDMWAAGCIFAEMLT  220 (320)
T ss_dssp             CCTTCBCC------------------CCCGGGSCCTTCCHHHHHCT-------------TCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccCCCccccc----------ccccccccccccCcHHhcCc-------------ccCCchhhhHhHHHHHHHHHh
Confidence            9999886543211100          01234578889995554321             346789999999999999999


Q ss_pred             CCCCCcccc
Q 039073          220 GTHPGELLS  228 (257)
Q Consensus       220 G~~Pf~~~~  228 (257)
                      |+.||.+..
T Consensus       221 g~~pf~~~~  229 (320)
T 2i6l_A          221 GKTLFAGAH  229 (320)
T ss_dssp             SSCSSCCSS
T ss_pred             CCCCCCCCC
Confidence            999998654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.93  E-value=1.1e-26  Score=199.84  Aligned_cols=164  Identities=24%  Similarity=0.344  Sum_probs=116.9

Q ss_pred             CCCcCHHHHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc------------H-HHHH--------
Q 039073           33 DGKISYEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED------------S-AFVK--------   90 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~------------~-~~~~--------   90 (257)
                      ....+..+.....++|++.+.||+|+||.||+|.. .+++.||||++.......            + ...+        
T Consensus        30 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~  109 (320)
T 3a99_A           30 TKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG  109 (320)
T ss_dssp             ----------CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCS
T ss_pred             hccCcccccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCC
Confidence            34445566677788999999999999999999965 578899999986432110            0 0000        


Q ss_pred             ----------------------------HHH--------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-CC
Q 039073           91 ----------------------------SFQ--------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-SN  133 (257)
Q Consensus        91 ----------------------------~~~--------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-~~  133 (257)
                                                  .+.        .++..+..|++.||.|||+.   +++||||||+||+++ .+
T Consensus       110 i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          110 VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             BCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTT
T ss_pred             ceEEEEEEecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCC
Confidence                                        000        12233566999999999999   999999999999999 77


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGV  212 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~  212 (257)
                      +.++|+|||++.......               .....||..|+|||++              .+..+ +.++|+||||+
T Consensus       187 ~~~kL~Dfg~~~~~~~~~---------------~~~~~gt~~y~aPE~~--------------~~~~~~~~~~Di~slG~  237 (320)
T 3a99_A          187 GELKLIDFGSGALLKDTV---------------YTDFDGTRVYSPPEWI--------------RYHRYHGRSAAVWSLGI  237 (320)
T ss_dssp             TEEEECCCTTCEECCSSC---------------BCCCCSCGGGSCHHHH--------------HHSCBCHHHHHHHHHHH
T ss_pred             CCEEEeeCcccccccccc---------------ccCCCCCccCCChHHh--------------ccCCCCCccchHHhHHH
Confidence            899999999987654221               1224589999995554              33333 56889999999


Q ss_pred             HHHHHHhCCCCCcccc
Q 039073          213 VALKVLMGTHPGELLS  228 (257)
Q Consensus       213 ~l~ell~G~~Pf~~~~  228 (257)
                      ++|||++|+.||....
T Consensus       238 il~el~~g~~pf~~~~  253 (320)
T 3a99_A          238 LLYDMVCGDIPFEHDE  253 (320)
T ss_dssp             HHHHHHHSSCSCCSHH
T ss_pred             HHHHHHHCCCCCCChh
Confidence            9999999999998543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.93  E-value=2.7e-25  Score=188.73  Aligned_cols=156  Identities=30%  Similarity=0.427  Sum_probs=117.0

Q ss_pred             hccccccceeeeecCceeEEEEEeCC----CCEEEEEEcCccccccHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPD----GKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------   98 (257)
                      ...+|++.+.||+|+||.||+|....    ...||+|.+....  .....+.+.+|+.+                     
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  100 (298)
T 3f66_A           23 SSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG  100 (298)
T ss_dssp             GGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS
T ss_pred             cceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC--CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC
Confidence            35679999999999999999996532    3358999887533  22334566666655                     


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                      ++.|++.|+.|||++   +++|+||||+||+++.++.++|+|||++..
T Consensus       101 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          101 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             ceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccc
Confidence                                            334899999999999   999999999999999999999999999876


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~  225 (257)
                      ........         ........+|+.|+|              ||...+..++.++|+||+|+++|+|++ |.+||.
T Consensus       178 ~~~~~~~~---------~~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  234 (298)
T 3f66_A          178 MYDKEYYS---------VHNKTGAKLPVKWMA--------------LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  234 (298)
T ss_dssp             CSCGGGCB---------C-----CCBCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ccccchhc---------cccccCCCCCccccC--------------hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCc
Confidence            53321110         011123456788999              566666667889999999999999999 677776


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       235 ~~  236 (298)
T 3f66_A          235 DV  236 (298)
T ss_dssp             TS
T ss_pred             cC
Confidence            54

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=8.6e-25  Score=188.51  Aligned_cols=163  Identities=24%  Similarity=0.320  Sum_probs=112.7

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHH------------------------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK------------------------   90 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~------------------------   90 (257)
                      ..+........++|++.+.||+|+||.||+|... ++.||||++............                        
T Consensus        26 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~  104 (337)
T 3mdy_A           26 GLPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGT  104 (337)
T ss_dssp             SSCHHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC
T ss_pred             CCCcccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC
Confidence            3444444555689999999999999999999875 889999998543211100000                        


Q ss_pred             -------------------HHH-------HHHHHHHHHHHHHHHHHhhCC-----CCCeEeeCCCCCCeEEcCCCCeEEe
Q 039073           91 -------------------SFQ-------NEAHVLSTSVAHALSYLHHDC-----TLSIVHRDISSNNILLDSNLEAFVA  139 (257)
Q Consensus        91 -------------------~~~-------~e~~~l~~~i~~~l~~LH~~~-----~~~i~H~dLkp~nill~~~~~~~l~  139 (257)
                                         .+.       .++..+..|++.||.|||+..     ..+++||||||+||+++.++.++|+
T Consensus       105 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~  184 (337)
T 3mdy_A          105 GSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA  184 (337)
T ss_dssp             GGGCEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred             CCCCceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence                               000       112235568999999999651     2389999999999999999999999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCC------ccchhhHHHH
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTE------KCDVYSFGVV  213 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~------~~DiwSlG~~  213 (257)
                      |||++............         ......||+.|+|||++...              ..+.      ++|||||||+
T Consensus       185 Dfg~a~~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~--------------~~~~~~~~~~~~DiwslG~i  241 (337)
T 3mdy_A          185 DLGLAVKFISDTNEVDI---------PPNTRVGTKRYMPPEVLDES--------------LNRNHFQSYIMADMYSFGLI  241 (337)
T ss_dssp             CCTTCEECC------------------CCSSCSCGGGCCHHHHTTC--------------CCTTCTHHHHHHHHHHHHHH
T ss_pred             eCCCceeeccccccccC---------CCCCCccCcceeChhhcccc--------------cCCccccCccccchHHHHHH
Confidence            99998765433221100         01234689999996655433              3333      4899999999


Q ss_pred             HHHHHhCC
Q 039073          214 ALKVLMGT  221 (257)
Q Consensus       214 l~ell~G~  221 (257)
                      +|||++|.
T Consensus       242 l~el~tg~  249 (337)
T 3mdy_A          242 LWEVARRC  249 (337)
T ss_dssp             HHHHHTTB
T ss_pred             HHHHHhcc
Confidence            99999993

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=1.5e-25  Score=197.07  Aligned_cols=155  Identities=29%  Similarity=0.409  Sum_probs=108.5

Q ss_pred             cccccceeeeecCceeEEEEEeC--C--CCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP--D--GKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~--~--~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ..|++.+.||+|+||.||+|...  +  +..||+|.+.....  ....+.+.+|+.+                       
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  166 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD--IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  166 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSC--SHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence            45788899999999999999642  2  23689999875322  2234556665543                       


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    ++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus       167 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~  243 (373)
T 3c1x_A          167 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY  243 (373)
T ss_dssp             EEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence                                          445899999999999   99999999999999999999999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......         .......++..|+|              ||...+..++.++||||||+++|||++ |.+||...
T Consensus       244 ~~~~~~~---------~~~~~~~~~~~y~a--------------PE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~  300 (373)
T 3c1x_A          244 DKEFDSV---------HNKTGAKLPVKWMA--------------LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  300 (373)
T ss_dssp             -----------------------CCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             ccccccc---------cccCCCCCcccccC--------------hHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence            3221100         00122456778999              566666667899999999999999999 78888764


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       301 ~  301 (373)
T 3c1x_A          301 N  301 (373)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.92  E-value=4.8e-25  Score=185.54  Aligned_cols=149  Identities=23%  Similarity=0.289  Sum_probs=112.8

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++......... ...+.+|+..                        
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~   87 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD-EQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML   87 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHH-HHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHH-HHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence            3578999999999999999999665 7999999998764333222 2333333332                        


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-------------
Q 039073           99 --------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-------------  133 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-------------  133 (257)
                                                      ++.|++.||.|||++   +++|+||||+||+++.+             
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~  164 (289)
T 1x8b_A           88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDED  164 (289)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC---------------
T ss_pred             EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccc
Confidence                                            445899999999999   99999999999999844             


Q ss_pred             ------CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccch
Q 039073          134 ------LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDV  207 (257)
Q Consensus       134 ------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~Di  207 (257)
                            ..++|+|||.+.......                 ...||..|+|||++....             .++.++||
T Consensus       165 ~~~~~~~~~kl~Dfg~~~~~~~~~-----------------~~~gt~~y~aPE~~~~~~-------------~~~~~~Di  214 (289)
T 1x8b_A          165 DWASNKVMFKIGDLGHVTRISSPQ-----------------VEEGDSRFLANEVLQENY-------------THLPKADI  214 (289)
T ss_dssp             -----CCCEEECCCTTCEETTCSC-----------------CCCCCGGGCCHHHHTTCC-------------TTHHHHHH
T ss_pred             cccCCceEEEEcccccccccCCcc-----------------ccCCCccccChhHhcCCC-------------CCCchhhH
Confidence                  478999999987654221                 134789999966543221             24569999


Q ss_pred             hhHHHHHHHHHhCCCCCcc
Q 039073          208 YSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       208 wSlG~~l~ell~G~~Pf~~  226 (257)
                      ||||+++|+|++|.+|+..
T Consensus       215 ~slG~il~~l~~~~~~~~~  233 (289)
T 1x8b_A          215 FALALTVVCAAGAEPLPRN  233 (289)
T ss_dssp             HHHHHHHHHHTTCCCCCSS
T ss_pred             HHHHHHHHHHhcCCCCCcc
Confidence            9999999999999987753

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.92  E-value=5.1e-25  Score=186.54  Aligned_cols=151  Identities=24%  Similarity=0.423  Sum_probs=112.5

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|.....||+|+||.||+|.. .+++.||||++......   ..+.+.+|+.+                          
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   98 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSR---YSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFM   98 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC------HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchH---HHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEE
Confidence            3445556999999999999965 57889999998654321   12334444443                          


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-CCCeEEeeccCcccccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-~~~~~l~dfg~~~~~~~  149 (257)
                                                  ++.|++.|+.|||++   +++|+||+|+||+++. ++.++|+|||++.....
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~  175 (295)
T 2clq_A           99 EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG  175 (295)
T ss_dssp             ECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred             EeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence                                        345899999999999   9999999999999987 88999999999876532


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....             .....|+..|+|||++....            ..++.++|+||||+++|+|++|+.||...
T Consensus       176 ~~~~-------------~~~~~~~~~y~aPE~~~~~~------------~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          176 INPC-------------TETFTGTLQYMAPEIIDKGP------------RGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             ------------------CCCCCCGGGCCHHHHHHGG------------GGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             CCCc-------------ccccCCCccccChhhhcCCC------------CCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            2111             12246889999966653321            12578999999999999999999999754

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.92  E-value=4.1e-25  Score=190.38  Aligned_cols=154  Identities=27%  Similarity=0.386  Sum_probs=113.7

Q ss_pred             hccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------   98 (257)
                      ..++|++.+.||+|+||.||+|..      .+++.||||++.....  ......+.+|+.+                   
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  105 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS--EQDELDFLMEALIISKFNHQNIVRCIGVSLQS  105 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc--hhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC
Confidence            467899999999999999999963      3577899999965322  2223455555554                   


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCe
Q 039073           99 ---------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEA  136 (257)
Q Consensus        99 ---------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~  136 (257)
                                                             ++.|++.||.|||++   +++|+||||+||+++.   +..+
T Consensus       106 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~  182 (327)
T 2yfx_A          106 LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVA  182 (327)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCE
T ss_pred             CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceE
Confidence                                                   334899999999999   9999999999999984   4469


Q ss_pred             EEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHH
Q 039073          137 FVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALK  216 (257)
Q Consensus       137 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~e  216 (257)
                      +|+|||++..........           ......|+..|+|              ||...+..++.++|+||||+++|+
T Consensus       183 kl~Dfg~~~~~~~~~~~~-----------~~~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~e  237 (327)
T 2yfx_A          183 KIGDFGMARDIYRASYYR-----------KGGCAMLPVKWMP--------------PEAFMEGIFTSKTDTWSFGVLLWE  237 (327)
T ss_dssp             EECCCHHHHHHHC-----------------CCGGGSCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             EECccccccccccccccc-----------cCCCcCCCcceeC--------------HhHhcCCCCCchhhHHHHHHHHHH
Confidence            999999987553322111           0123457889999              555555567889999999999999


Q ss_pred             HHh-CCCCCccc
Q 039073          217 VLM-GTHPGELL  227 (257)
Q Consensus       217 ll~-G~~Pf~~~  227 (257)
                      |++ |+.||...
T Consensus       238 llt~g~~p~~~~  249 (327)
T 2yfx_A          238 IFSLGYMPYPSK  249 (327)
T ss_dssp             HHTTSCCSSTTC
T ss_pred             HHcCCCCCCCCc
Confidence            998 99999754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.92  E-value=7.2e-25  Score=189.52  Aligned_cols=166  Identities=27%  Similarity=0.364  Sum_probs=120.7

Q ss_pred             CcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           35 KISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      ..++..-....++|++.+.||+|+||.||+|.. +++.||||++.....      ..+..|.++                
T Consensus        31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~------~~~~~e~~~~~~~~l~h~ni~~~~~  103 (342)
T 1b6c_B           31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE------RSWFREAEIYQTVMLRHENILGFIA  103 (342)
T ss_dssp             SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGGH------HHHHHHHHHHHHSCCCCTTBCCEEE
T ss_pred             CCceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchhH------HHHHHHHHHHHHhhcCCCcEEEEEe
Confidence            344444455578899999999999999999987 588999999864321      122233222                


Q ss_pred             ----------------------------------------HHHHHHHHHHHHh--------hCCCCCeEeeCCCCCCeEE
Q 039073           99 ----------------------------------------LSTSVAHALSYLH--------HDCTLSIVHRDISSNNILL  130 (257)
Q Consensus        99 ----------------------------------------l~~~i~~~l~~LH--------~~~~~~i~H~dLkp~nill  130 (257)
                                                              ++.|++.|+.|||        +.   +++|+||||+||++
T Consensus       104 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll  180 (342)
T 1b6c_B          104 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILV  180 (342)
T ss_dssp             EEECCCSSCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEE
T ss_pred             eecccCCccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEE
Confidence                                                    4458999999999        77   99999999999999


Q ss_pred             cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       131 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                      +.++.++|+|||++...........         .......||..|+|||++.........        .++.++|||||
T Consensus       181 ~~~~~~kL~Dfg~~~~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~--------~~~~~~Di~sl  243 (342)
T 1b6c_B          181 KKNGTCCIADLGLAVRHDSATDTID---------IAPNHRVGTKRYMAPEVLDDSINMKHF--------ESFKRADIYAM  243 (342)
T ss_dssp             CTTSCEEECCCTTCEEEETTTTEEE---------ECCCSCCCCGGGCCHHHHTSCCCTTCH--------HHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCceeccccccccc---------cccccCCcCcccCCHhhhccccccccc--------ccCCcccHHHH
Confidence            9999999999999876543321100         001234689999997776543221100        12358999999


Q ss_pred             HHHHHHHHhC----------CCCCccc
Q 039073          211 GVVALKVLMG----------THPGELL  227 (257)
Q Consensus       211 G~~l~ell~G----------~~Pf~~~  227 (257)
                      |+++|||++|          ..||...
T Consensus       244 G~il~el~tg~~~~~~~~~~~~p~~~~  270 (342)
T 1b6c_B          244 GLVFWEIARRCSIGGIHEDYQLPYYDL  270 (342)
T ss_dssp             HHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             HHHHHHHHhccCcCCcccccccCcccc
Confidence            9999999999          7788654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.92  E-value=5.8e-25  Score=188.11  Aligned_cols=158  Identities=23%  Similarity=0.392  Sum_probs=105.1

Q ss_pred             HhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAH-----------------------   97 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-----------------------   97 (257)
                      ....++|++.+.||+|+||.||+|... +|+.||||++........ ..+.+..+..                       
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   99 (318)
T 2dyl_A           21 QAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEE-NKRILMDLDVVLKSHDCPYIVQCFGTFITNTDV   99 (318)
T ss_dssp             ECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHH-HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchH-HHHHHHHHHHHHHhcCCCceeeEEEEEecCCcE
Confidence            445688999999999999999999764 799999999976532221 1111211111                       


Q ss_pred             ----------------------------HHHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           98 ----------------------------VLSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        98 ----------------------------~l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                  .+..|++.|+.|||+ +   +++|+||||+||+++.++.++|+|||++....
T Consensus       100 ~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  176 (318)
T 2dyl_A          100 FIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLV  176 (318)
T ss_dssp             EEEECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             EEEEeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhcc
Confidence                                        144589999999998 6   89999999999999999999999999987553


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      .....              ....|+..|+|||++....         .....++.++||||||+++|+|++|+.||..
T Consensus       177 ~~~~~--------------~~~~~~~~y~aPE~~~~~~---------~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (318)
T 2dyl_A          177 DDKAK--------------DRSAGCAAYMAPERIDPPD---------PTKPDYDIRADVWSLGISLVELATGQFPYKN  231 (318)
T ss_dssp             ------------------------CCTTCCHHHHC-----------------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             CCccc--------------cccCCCccccChhhccccc---------ccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence            32211              2245889999976653210         1233468899999999999999999999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.92  E-value=9.2e-26  Score=191.69  Aligned_cols=162  Identities=23%  Similarity=0.360  Sum_probs=107.2

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH------------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN------------------------   94 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~------------------------   94 (257)
                      .+....++|++.+.||+|+||.||+|.. .+++.||||++.......  ..+.+.+                        
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   86 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT--SMDELLKEIQAMSQCHHPNIVSYYTSFVVKD   86 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSS
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcch--hHHHHHHHHHHHhhcCCCCEeeEEEEEeecC
Confidence            3455678999999999999999999965 468899999886432110  0111111                        


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEe
Q 039073           95 -----------------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVA  139 (257)
Q Consensus        95 -----------------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~  139 (257)
                                                         ++..+..|++.|+.|||++   +++|+||+|+||+++.++.++|+
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~  163 (303)
T 2vwi_A           87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIA  163 (303)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred             CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEE
Confidence                                               2333566999999999999   99999999999999999999999


Q ss_pred             eccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh
Q 039073          140 DFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM  219 (257)
Q Consensus       140 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~  219 (257)
                      |||++............        .......||+.|+|||++...             ..++.++|+||+|+++|+|++
T Consensus       164 dfg~~~~~~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~Di~slG~il~~l~~  222 (303)
T 2vwi_A          164 DFGVSAFLATGGDITRN--------KVRKTFVGTPCWMAPEVMEQV-------------RGYDFKADIWSFGITAIELAT  222 (303)
T ss_dssp             CCHHHHHCC-----------------------CCCTTCCHHHHHHH-------------HCCCTHHHHHHHHHHHHHHHH
T ss_pred             eccchheeccCCCccch--------hhhcccCCCccccCHHHhccc-------------cCCCchhhHHHHHHHHHHHHh
Confidence            99998765432111000        001234688999996554321             235889999999999999999


Q ss_pred             CCCCCccc
Q 039073          220 GTHPGELL  227 (257)
Q Consensus       220 G~~Pf~~~  227 (257)
                      |+.||...
T Consensus       223 g~~pf~~~  230 (303)
T 2vwi_A          223 GAAPYHKY  230 (303)
T ss_dssp             SSCTTTTS
T ss_pred             CCCCCccC
Confidence            99999864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.92  E-value=4e-25  Score=186.05  Aligned_cols=152  Identities=22%  Similarity=0.397  Sum_probs=117.4

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHH----------------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAF----------------------------------   88 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~----------------------------------   88 (257)
                      ..++|++.+.||+|+||.||+|... +++.||+|++..........                                  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSS   88 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccc
Confidence            3567999999999999999999765 79999999986432111000                                  


Q ss_pred             ------------------HHHHH----------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEee
Q 039073           89 ------------------VKSFQ----------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVAD  140 (257)
Q Consensus        89 ------------------~~~~~----------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~d  140 (257)
                                        ...+.          .++..+..|++.|+.|||++   +++|+||||+||+++.++.++|+|
T Consensus        89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~D  165 (284)
T 2a19_B           89 RSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGD  165 (284)
T ss_dssp             CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECC
T ss_pred             ccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECc
Confidence                              01111          12333567999999999999   999999999999999999999999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||++.........              ....|++.|+|              ||...+..++.++|+||||+++|+|++|
T Consensus       166 fg~~~~~~~~~~~--------------~~~~~~~~y~a--------------PE~~~~~~~~~~~Di~slG~il~~l~~~  217 (284)
T 2a19_B          166 FGLVTSLKNDGKR--------------TRSKGTLRYMS--------------PEQISSQDYGKEVDLYALGLILAELLHV  217 (284)
T ss_dssp             CTTCEESSCCSCC--------------CCCCSCCTTSC--------------HHHHHCSCCCTHHHHHHHHHHHHHHHSC
T ss_pred             chhheeccccccc--------------cccCCcccccC--------------hhhhccCCCcchhhhHHHHHHHHHHHhc
Confidence            9998765432211              12457899999              5555666678999999999999999999


Q ss_pred             CCCCcc
Q 039073          221 THPGEL  226 (257)
Q Consensus       221 ~~Pf~~  226 (257)
                      ..||..
T Consensus       218 ~~~~~~  223 (284)
T 2a19_B          218 CDTAFE  223 (284)
T ss_dssp             CSSHHH
T ss_pred             CCcchh
Confidence            999864

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.92  E-value=2.2e-25  Score=192.05  Aligned_cols=153  Identities=25%  Similarity=0.425  Sum_probs=118.5

Q ss_pred             hccccccceeeeecCceeEEEEEe-----CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-----PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------   98 (257)
                      ..++|++.+.||+|+||.||+|..     .+++.||+|++.....   ...+.+.+|+.+                    
T Consensus        39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  115 (326)
T 2w1i_A           39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE---EHLRDFEREIEILKSLQHDNIVKYKGVCYSAG  115 (326)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCS---HHHHHHHHHHHHHHTCCCTTBCCEEEEECC--
T ss_pred             CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCH---HHHHHHHHHHHHHHhCCCCCeeeEEEEEEecC
Confidence            456799999999999999999973     4688999999976422   224455666555                    


Q ss_pred             ----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 ----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 ----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                        ++.|++.||.+||+.   +++|+||||+||+++.++.++|+|||++
T Consensus       116 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~  192 (326)
T 2w1i_A          116 RRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLT  192 (326)
T ss_dssp             --CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             CCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcch
Confidence                                              334899999999999   9999999999999999999999999998


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ...........          ......++..|+||              |...+..++.++|+||||+++|+|++|..||
T Consensus       193 ~~~~~~~~~~~----------~~~~~~~~~~y~aP--------------E~~~~~~~~~~~Di~slG~il~el~tg~~~~  248 (326)
T 2w1i_A          193 KVLPQDKEYYK----------VKEPGESPIFWYAP--------------ESLTESKFSVASDVWSFGVVLYELFTYIEKS  248 (326)
T ss_dssp             EECCSSCSEEE----------CSSCCSCCGGGCCH--------------HHHHHCEEEHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             hhccccccccc----------cccCCCCceeEECc--------------hhhcCCCCCchhhHHHHHHHHHHHHhcCCCC
Confidence            86643321100          01123467789995              4444555678999999999999999999998


Q ss_pred             cc
Q 039073          225 EL  226 (257)
Q Consensus       225 ~~  226 (257)
                      ..
T Consensus       249 ~~  250 (326)
T 2w1i_A          249 KS  250 (326)
T ss_dssp             GS
T ss_pred             CC
Confidence            74

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.92  E-value=5.2e-25  Score=197.32  Aligned_cols=156  Identities=26%  Similarity=0.340  Sum_probs=110.1

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      +.|...+.||+|+||+||.+...+|+.||||++.....      +.+.+|+.+                           
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~------~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~   88 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC------DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIAL   88 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGH------HHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHH------HHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEE
Confidence            34556788999999999888777899999999865321      111222222                           


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-------------C
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-------------L  134 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-------------~  134 (257)
                                                     ++.|++.||.|||++   +++||||||+||+++.+             +
T Consensus        89 E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~  165 (434)
T 2rio_A           89 ELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENL  165 (434)
T ss_dssp             CCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred             ecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCce
Confidence                                           456899999999999   99999999999999754             4


Q ss_pred             CeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHH
Q 039073          135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA  214 (257)
Q Consensus       135 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l  214 (257)
                      .++|+|||++...........         .......||+.|+|||++.....       ......++.++|||||||++
T Consensus       166 ~~kL~DFG~a~~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~-------~~~~~~~~~~~DiwSlG~il  229 (434)
T 2rio_A          166 RILISDFGLCKKLDSGQSSFR---------TNLNNPSGTSGWRAPELLEESNN-------LQTKRRLTRSIDIFSMGCVF  229 (434)
T ss_dssp             EEEECCCTTCEECCC-----------------------CCTTSCHHHHSCCCT-------TSCCCCCCTHHHHHHHHHHH
T ss_pred             EEEEcccccceecCCCCccce---------eeecCCCCCCCccCHHHhccccc-------cccccCcchhhhhHhHHHHH
Confidence            799999999987643321100         00123568999999777654321       11224578999999999999


Q ss_pred             HHHHh-CCCCCcc
Q 039073          215 LKVLM-GTHPGEL  226 (257)
Q Consensus       215 ~ell~-G~~Pf~~  226 (257)
                      |||++ |+.||..
T Consensus       230 ~ellt~g~~Pf~~  242 (434)
T 2rio_A          230 YYILSKGKHPFGD  242 (434)
T ss_dssp             HHHHTTSCCTTCS
T ss_pred             HHHHhCCCCCCCC
Confidence            99999 9999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.92  E-value=5.7e-25  Score=206.43  Aligned_cols=158  Identities=28%  Similarity=0.403  Sum_probs=120.4

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      .++....++|++.+.||+|+||.||+|...    .+..||||++....  .....+.+.+|+.+                
T Consensus       383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~  460 (656)
T 2j0j_A          383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVI  460 (656)
T ss_dssp             GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            444556688999999999999999999653    25579999987543  22334556666655                


Q ss_pred             -----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccC
Q 039073           99 -----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGT  143 (257)
Q Consensus        99 -----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~  143 (257)
                                                         ++.|++.||.|||++   +++||||||+||+++.++.++|+|||+
T Consensus       461 ~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~  537 (656)
T 2j0j_A          461 TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGL  537 (656)
T ss_dssp             CSSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCC
T ss_pred             ecCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCC
Confidence                                               334899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCC
Q 039073          144 ARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTH  222 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~  222 (257)
                      +..........            .....++..|+|              ||.+.+..++.++||||||+++|||++ |..
T Consensus       538 a~~~~~~~~~~------------~~~~~~t~~y~a--------------PE~~~~~~~~~~~DiwSlG~il~ellt~g~~  591 (656)
T 2j0j_A          538 SRYMEDSTYYK------------ASKGKLPIKWMA--------------PESINFRRFTSASDVWMFGVCMWEILMHGVK  591 (656)
T ss_dssp             CCSCCC----------------------CCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CeecCCCccee------------ccCCCCCcceeC--------------HHHhcCCCCCchhhHHHHHHHHHHHHHcCCC
Confidence            88653322110            112346778999              555666667889999999999999997 999


Q ss_pred             CCccc
Q 039073          223 PGELL  227 (257)
Q Consensus       223 Pf~~~  227 (257)
                      ||.+.
T Consensus       592 Pf~~~  596 (656)
T 2j0j_A          592 PFQGV  596 (656)
T ss_dssp             TTTTC
T ss_pred             CCCCC
Confidence            99864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.92  E-value=2.9e-25  Score=192.44  Aligned_cols=153  Identities=25%  Similarity=0.344  Sum_probs=99.2

Q ss_pred             hccccccce-eeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHH----------------------------
Q 039073           44 ATEEFHIKY-CIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQ----------------------------   93 (257)
Q Consensus        44 ~~~~~~~~~-~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~----------------------------   93 (257)
                      ..++|.+.+ .||+|+||.||+|... +++.||||++........+......                            
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  105 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIM  105 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEE
Confidence            467899965 6999999999999665 7999999998643211111000000                            


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeeccCccccc
Q 039073           94 ----------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADFGTARLLH  148 (257)
Q Consensus        94 ----------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~dfg~~~~~~  148 (257)
                                            .++..+..|++.||.|||+.   +++||||||+||+++.   ++.++|+|||++....
T Consensus       106 e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~  182 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT  182 (336)
T ss_dssp             ECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceecc
Confidence                                  12233566999999999999   9999999999999976   4459999999987553


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....               ....||+.|+|||              ...+..++.++|+||+|+++|+|++|+.||....
T Consensus       183 ~~~~---------------~~~~~t~~y~aPE--------------~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (336)
T 3fhr_A          183 QNAL---------------QTPCYTPYYVAPE--------------VLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT  233 (336)
T ss_dssp             --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             cccc---------------ccCCCCcCccChh--------------hhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            2211               2245789999955              4444446779999999999999999999997543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.92  E-value=4.7e-25  Score=189.88  Aligned_cols=157  Identities=28%  Similarity=0.386  Sum_probs=103.0

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH------------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH------------------------   97 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~------------------------   97 (257)
                      ...++|++.+.||+|+||.||+|.. .+|+.||||++......  .....+..|..                        
T Consensus        19 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~   96 (327)
T 3aln_A           19 FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDE--KEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDC   96 (327)
T ss_dssp             CCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCH--HHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEE
T ss_pred             cCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCc--hHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCce
Confidence            3468899999999999999999966 47899999999754321  11222223322                        


Q ss_pred             --------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073           98 --------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus        98 --------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                      .+..|++.|+.|||+.  .+++|+||||+||+++.++.++|+|||++.
T Consensus        97 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           97 WICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             EEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence                                            2445899999999984  289999999999999999999999999987


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........              ....||..|+|||++...          ..+..++.++|+||||+++|+|++|+.||.
T Consensus       175 ~~~~~~~~--------------~~~~gt~~y~aPE~~~~~----------~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (327)
T 3aln_A          175 QLVDSIAK--------------TRDAGCRPYMAPERIDPS----------ASRQGYDVRSDVWSLGITLYELATGRFPYP  230 (327)
T ss_dssp             C------------------------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred             eccccccc--------------ccCCCCccccCceeeccc----------cCcCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            65322111              123588999996654211          033446889999999999999999999998


Q ss_pred             cc
Q 039073          226 LL  227 (257)
Q Consensus       226 ~~  227 (257)
                      ..
T Consensus       231 ~~  232 (327)
T 3aln_A          231 KW  232 (327)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.92  E-value=5.3e-25  Score=186.24  Aligned_cols=152  Identities=28%  Similarity=0.454  Sum_probs=117.0

Q ss_pred             hhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||+|... +++.||+|++........ ..+.+.+|+.+                       
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   97 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK-DTSTILREVELLKKLDHPNIMKLFEILEDSSSFY   97 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchH-HHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence            34578999999999999999999765 789999999865432211 12344455544                       


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC---CCeEEeeccCcccc
Q 039073           99 ----------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN---LEAFVADFGTARLL  147 (257)
Q Consensus        99 ----------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~---~~~~l~dfg~~~~~  147 (257)
                                                  +..|++.|+.|||++   +++|+||+|+||+++.+   +.++|+|||++...
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~  174 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (287)
T ss_dssp             EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred             EEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence                                        445899999999999   99999999999999754   46999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .....              .....|+..|+|||++              .+ .++.++|+||+|+++|+|++|..||.+.
T Consensus       175 ~~~~~--------------~~~~~~~~~y~aPE~~--------------~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (287)
T 2wei_A          175 QQNTK--------------MKDRIGTAYYIAPEVL--------------RG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (287)
T ss_dssp             CCCSS--------------CSCHHHHHTTCCHHHH--------------TT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCCc--------------cccccCcccccChHHh--------------cC-CCCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence            33221              1224578899995543              33 2688999999999999999999999764

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.92  E-value=3.5e-25  Score=190.81  Aligned_cols=150  Identities=28%  Similarity=0.445  Sum_probs=110.3

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEE--EEEEcCccccccHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVV--ALKKLHQSETEDSAFVKSFQNEAH------------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~v--aiK~~~~~~~~~~~~~~~~~~e~~------------------------   97 (257)
                      .++|++.+.||+|+||.||+|... ++..+  |+|.+......  ...+.+.+|+.                        
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL  101 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccch--HHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence            478999999999999999999653 56644  88988642211  11122233322                        


Q ss_pred             --------------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           98 --------------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        98 --------------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                  .+..|++.||.|||++   +++|+||||+||+++.+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~  178 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGEN  178 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGG
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCC
Confidence                                                        2455899999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.++|+|||++.........              ....++..|+||              |...+..++.++|+||+|++
T Consensus       179 ~~~kL~Dfg~~~~~~~~~~~--------------~~~~~~~~y~aP--------------E~~~~~~~~~~~Di~slG~i  230 (327)
T 1fvr_A          179 YVAKIADFGLSRGQEVYVKK--------------TMGRLPVRWMAI--------------ESLNYSVYTTNSDVWSYGVL  230 (327)
T ss_dssp             GCEEECCTTCEESSCEECCC------------------CCTTTCCH--------------HHHHHCEECHHHHHHHHHHH
T ss_pred             CeEEEcccCcCccccccccc--------------cCCCCCccccCh--------------hhhccccCCchhcchHHHHH
Confidence            99999999998743221111              123457789994              55555556889999999999


Q ss_pred             HHHHHh-CCCCCccc
Q 039073          214 ALKVLM-GTHPGELL  227 (257)
Q Consensus       214 l~ell~-G~~Pf~~~  227 (257)
                      +|+|++ |+.||.+.
T Consensus       231 l~ellt~g~~pf~~~  245 (327)
T 1fvr_A          231 LWEIVSLGGTPYCGM  245 (327)
T ss_dssp             HHHHHTTSCCTTTTC
T ss_pred             HHHHHcCCCCCCCCC
Confidence            999998 99999764

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.92  E-value=2.5e-25  Score=188.05  Aligned_cols=147  Identities=20%  Similarity=0.304  Sum_probs=112.1

Q ss_pred             hccccccceeeeecCceeEEEEEeC-CC-------CEEEEEEcCccccccHHHHHHHHHHHHH-----------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELP-DG-------KVVALKKLHQSETEDSAFVKSFQNEAHV-----------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~-------~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------   98 (257)
                      ..++|++.+.||+|+||.||+|... ++       ..||+|++.......   .+.+.+|+.+                 
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~---~~~~~~E~~~l~~l~h~~iv~~~~~~~   82 (289)
T 4fvq_A            6 RNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNY---SESFFEAASMMSKLSHKHLVLNYGVCV   82 (289)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGG---HHHHHHHHHHHHTSCCTTBCCEEEEEC
T ss_pred             chhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHH---HHHHHHHHHHHHhCCCCCEeEEEEEEE
Confidence            3578999999999999999999543 34       479999986543222   3445555554                 


Q ss_pred             -----------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC--------
Q 039073           99 -----------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE--------  135 (257)
Q Consensus        99 -----------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~--------  135 (257)
                                                         ++.|++.||.|||++   +++||||||+||+++.++.        
T Consensus        83 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           83 CGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             CTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             eCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccce
Confidence                                               344899999999999   9999999999999998887        


Q ss_pred             eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHH
Q 039073          136 AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVAL  215 (257)
Q Consensus       136 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~  215 (257)
                      ++|+|||++.....                 .....|+..|+|||++...             ..++.++||||+|+++|
T Consensus       160 ~kl~Dfg~~~~~~~-----------------~~~~~~~~~y~aPE~~~~~-------------~~~~~~~DiwslG~il~  209 (289)
T 4fvq_A          160 IKLSDPGISITVLP-----------------KDILQERIPWVPPECIENP-------------KNLNLATDKWSFGTTLW  209 (289)
T ss_dssp             EEECCCCSCTTTSC-----------------HHHHHHTTTTSCHHHHHCG-------------GGCCHHHHHHHHHHHHH
T ss_pred             eeeccCcccccccC-----------------ccccCCcCcccCHHHhCCC-------------CCCCchhHHHHHHHHHH
Confidence            99999999764321                 1224578889995554321             33688999999999999


Q ss_pred             HHHh-CCCCCcc
Q 039073          216 KVLM-GTHPGEL  226 (257)
Q Consensus       216 ell~-G~~Pf~~  226 (257)
                      +|++ |.+||..
T Consensus       210 el~~g~~~~~~~  221 (289)
T 4fvq_A          210 EICSGGDKPLSA  221 (289)
T ss_dssp             HHHTTTCCTTTT
T ss_pred             HHHcCCCCCccc
Confidence            9999 5566654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.92  E-value=1.9e-25  Score=193.67  Aligned_cols=151  Identities=25%  Similarity=0.410  Sum_probs=118.1

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccH--------------HHHHHHHHHHHH------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDS--------------AFVKSFQNEAHV------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~--------------~~~~~~~~e~~~------------   98 (257)
                      .++|++.+.||+|+||.||+|.. +++.||+|++........              ...+.+.+|+.+            
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            57899999999999999999988 899999999865422110              001344555444            


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEE
Q 039073           99 -----------------------------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILL  130 (257)
Q Consensus        99 -----------------------------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill  130 (257)
                                                                     ++.|++.|+.|||+ +   +++|+||+|+||++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~  185 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILM  185 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEE
Confidence                                                           44589999999998 8   99999999999999


Q ss_pred             cCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCC-ccchh
Q 039073          131 DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTE-KCDVY  208 (257)
Q Consensus       131 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~-~~Diw  208 (257)
                      +.++.++|+|||.+.......               .....|+..|+|||              ...+. .++. ++|+|
T Consensus       186 ~~~~~~kl~dfg~~~~~~~~~---------------~~~~~~~~~y~aPE--------------~~~~~~~~~~~~~Di~  236 (348)
T 2pml_X          186 DKNGRVKLSDFGESEYMVDKK---------------IKGSRGTYEFMPPE--------------FFSNESSYNGAKVDIW  236 (348)
T ss_dssp             CTTSCEEECCCTTCEECBTTE---------------ECSSCSCGGGCCGG--------------GGSSCCCEEHHHHHHH
T ss_pred             cCCCcEEEecccccccccccc---------------ccCCCCCcCccCch--------------hhcCCCCCCcchhhHH
Confidence            999999999999987653221               12346889999955              44444 3444 89999


Q ss_pred             hHHHHHHHHHhCCCCCcccc
Q 039073          209 SFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       209 SlG~~l~ell~G~~Pf~~~~  228 (257)
                      |+|+++|+|++|+.||....
T Consensus       237 slG~il~~l~~g~~pf~~~~  256 (348)
T 2pml_X          237 SLGICLYVMFYNVVPFSLKI  256 (348)
T ss_dssp             HHHHHHHHHHHSSCSSCCSS
T ss_pred             HHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999998643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.92  E-value=2.2e-25  Score=190.97  Aligned_cols=163  Identities=25%  Similarity=0.353  Sum_probs=115.9

Q ss_pred             hhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ...++|++.+.||+|+||.||++.. .+++.||||++....   ....+.+.+|+.+                       
T Consensus        26 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  102 (317)
T 2buj_A           26 IDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE---QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAK  102 (317)
T ss_dssp             ETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS---HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTE
T ss_pred             ECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC---HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCC
Confidence            4567899999999999999999976 579999999885432   2223444455444                       


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          +..|++.||.|||++   +++|+||||+||+++.++.++|+|||
T Consensus       103 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg  179 (317)
T 2buj_A          103 HEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLG  179 (317)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             ceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecC
Confidence                                                445899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      ++............    ...........||..|+|||++....           ...++.++||||||+++|+|++|+.
T Consensus       180 ~~~~~~~~~~~~~~----~~~~~~~~~~~gt~~y~aPE~~~~~~-----------~~~~~~~~Di~slG~il~el~~g~~  244 (317)
T 2buj_A          180 SMNQACIHVEGSRQ----ALTLQDWAAQRCTISYRAPELFSVQS-----------HCVIDERTDVWSLGCVLYAMMFGEG  244 (317)
T ss_dssp             SCEESCEEEESHHH----HHHHHHHHHHHSCGGGCCGGGSSCCS-----------EEEECTHHHHHHHHHHHHHHHHSSC
T ss_pred             cchhcccccccccc----cccccccccccCCcccCCHhHhccCC-----------CcCCCchhhHHHHHHHHHHHHhCCC
Confidence            87754321100000    00000012245688999955442211           1125789999999999999999999


Q ss_pred             CCcc
Q 039073          223 PGEL  226 (257)
Q Consensus       223 Pf~~  226 (257)
                      ||+.
T Consensus       245 p~~~  248 (317)
T 2buj_A          245 PYDM  248 (317)
T ss_dssp             TTHH
T ss_pred             Chhh
Confidence            9975

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.92  E-value=3.9e-25  Score=189.07  Aligned_cols=157  Identities=25%  Similarity=0.346  Sum_probs=112.1

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH-------------HHHHHH-------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS-------------AFVKSF-------------   92 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~-------------~~~~~~-------------   92 (257)
                      +.....++|++.+.||+|+||.||+|.. .+++.||||++........             .....+             
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            3344578899999999999999999966 4788999999965422110             000000             


Q ss_pred             -------------------------H--------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc-CCCCeEE
Q 039073           93 -------------------------Q--------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLD-SNLEAFV  138 (257)
Q Consensus        93 -------------------------~--------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~-~~~~~~l  138 (257)
                                               .        .++..+..|++.||.|||++   +++|+||||+||+++ .++.++|
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl  181 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKL  181 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEE
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEE
Confidence                                     0        01222556899999999999   999999999999999 7889999


Q ss_pred             eeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHH
Q 039073          139 ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKV  217 (257)
Q Consensus       139 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~el  217 (257)
                      +|||++........               ....|+..|+|||++              .+..+ +.++|+||+|+++|+|
T Consensus       182 ~dfg~~~~~~~~~~---------------~~~~~~~~y~aPE~~--------------~~~~~~~~~~Di~slG~il~~l  232 (312)
T 2iwi_A          182 IDFGSGALLHDEPY---------------TDFDGTRVYSPPEWI--------------SRHQYHALPATVWSLGILLYDM  232 (312)
T ss_dssp             CCCSSCEECCSSCB---------------CCCCSCTTTSCHHHH--------------HHSCBCHHHHHHHHHHHHHHHH
T ss_pred             EEcchhhhcccCcc---------------cccCCcccccCceee--------------ecCCCCCccchHHHHHHHHHHH
Confidence            99999876543211               224578899995554              33333 3489999999999999


Q ss_pred             HhCCCCCcccc
Q 039073          218 LMGTHPGELLS  228 (257)
Q Consensus       218 l~G~~Pf~~~~  228 (257)
                      ++|+.||....
T Consensus       233 ~~g~~pf~~~~  243 (312)
T 2iwi_A          233 VCGDIPFERDQ  243 (312)
T ss_dssp             HHSSCSCCSHH
T ss_pred             HHCCCCCCChH
Confidence            99999998543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.91  E-value=4.8e-25  Score=197.48  Aligned_cols=161  Identities=25%  Similarity=0.313  Sum_probs=110.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHH---------------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQN---------------------------   94 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~---------------------------   94 (257)
                      .....+|++.+.||+|+||+|+.....+++.||||++.............+..                           
T Consensus        20 ~i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           20 IVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             EETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence            44456799999999999999776666689999999997643322111111111                           


Q ss_pred             -------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-----CCCeEEeeccCccccccC
Q 039073           95 -------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-----NLEAFVADFGTARLLHVD  150 (257)
Q Consensus        95 -------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-----~~~~~l~dfg~~~~~~~~  150 (257)
                                         ++..+..|++.||.|||++   +|+||||||+||+++.     ...++|+|||++......
T Consensus       100 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~  176 (432)
T 3p23_A          100 CAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVG  176 (432)
T ss_dssp             CSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---
T ss_pred             CCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCC
Confidence                               1122556899999999999   9999999999999943     235779999999866432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .....          ......||+.|+|||++....           ...++.++||||+||++|||++ |..||..
T Consensus       177 ~~~~~----------~~~~~~gt~~y~APE~l~~~~-----------~~~~t~~~DiwSlG~il~ellt~g~~pf~~  232 (432)
T 3p23_A          177 RHSFS----------RRSGVPGTEGWIAPEMLSEDC-----------KENPTYTVDIFSAGCVFYYVISEGSHPFGK  232 (432)
T ss_dssp             -------------------CCSCTTSCCGGGTSCC--------------CCCTHHHHHHHHHHHHHHHTTSCBTTBS
T ss_pred             Cccee----------eccccCCCcCccChhhhhccc-----------ccCCCcHHHHHHHHHHHHHHHcCCCCCcch
Confidence            21100          112356899999965543211           2335779999999999999999 9999964

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.91  E-value=3.7e-25  Score=189.52  Aligned_cols=174  Identities=21%  Similarity=0.333  Sum_probs=119.2

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHH--------------------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQ--------------------   93 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--------------------   93 (257)
                      ......++....++|++.+.||+|+||.||+|....  .+|+|++......... .+.+.                    
T Consensus        21 ~~~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~-~~~~~~e~~~l~~l~h~~iv~~~~~   97 (319)
T 2y4i_B           21 TSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQ-LKAFKREVMAYRQTRHENVVLFMGA   97 (319)
T ss_dssp             -CCCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCC-CCCCCTTGGGGTTCCCTTBCCCCEE
T ss_pred             cccccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHH-HHHHHHHHHHHhcCCCCCEeEEEEE
Confidence            345567777788999999999999999999997754  3899998643211100 00011                    


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           94 --------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        94 --------------------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                      .++..+..|++.|+.|||++   +++|+||||+||+++ ++.++|+||
T Consensus        98 ~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Df  173 (319)
T 2y4i_B           98 CMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDF  173 (319)
T ss_dssp             EECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCC
T ss_pred             EecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeec
Confidence                                            23344677999999999999   999999999999998 679999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++...........        ........|+..|+|||++......     .......++.++||||||+++|+|++|+
T Consensus       174 g~~~~~~~~~~~~~--------~~~~~~~~g~~~y~aPE~~~~~~~~-----~~~~~~~~~~~~Di~slG~il~el~~g~  240 (319)
T 2y4i_B          174 GLFSISGVLQAGRR--------EDKLRIQNGWLCHLAPEIIRQLSPD-----TEEDKLPFSKHSDVFALGTIWYELHARE  240 (319)
T ss_dssp             SCCC------------------CCSCBCCSGGGGTSCHHHHSCBSCC-------CCCSCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcccccccccccc--------ccccccCCCcccccChHHhhhcccc-----ccccccCCCchhhHHHHHHHHHHHHhCC
Confidence            99775432111100        0011234588999998776543211     1112334688999999999999999999


Q ss_pred             CCCccc
Q 039073          222 HPGELL  227 (257)
Q Consensus       222 ~Pf~~~  227 (257)
                      .||...
T Consensus       241 ~p~~~~  246 (319)
T 2y4i_B          241 WPFKTQ  246 (319)
T ss_dssp             CSSSSC
T ss_pred             CCCCCC
Confidence            999854

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.91  E-value=3.6e-24  Score=181.68  Aligned_cols=128  Identities=12%  Similarity=0.041  Sum_probs=105.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||.||+|... +++.||||++...........+.+.+|+..                         
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            467999999999999999999764 589999999987665555555666666655                         


Q ss_pred             ------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCC
Q 039073           99 ------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR  154 (257)
Q Consensus        99 ------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~  154 (257)
                                              +..|++.||.|||++   +++||||||+||+++.++.++|++++.           
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~~-----------  175 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPAT-----------  175 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCCC-----------
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEeccc-----------
Confidence                                    344899999999999   999999999999999999999874432           


Q ss_pred             CccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccccc
Q 039073          155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSS  229 (257)
Q Consensus       155 ~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~~  229 (257)
                                            ++                     .++.++|||||||++|+|++|+.||.+.+.
T Consensus       176 ----------------------~~---------------------~~~~~~Di~slG~il~elltg~~Pf~~~~~  207 (286)
T 3uqc_A          176 ----------------------MP---------------------DANPQDDIRGIGASLYALLVNRWPLPEAGV  207 (286)
T ss_dssp             ----------------------CT---------------------TCCHHHHHHHHHHHHHHHHHSEECSCCCSB
T ss_pred             ----------------------cC---------------------CCCchhHHHHHHHHHHHHHHCCCCCCcCCc
Confidence                                  11                     136799999999999999999999987543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.90  E-value=8.4e-24  Score=179.26  Aligned_cols=155  Identities=27%  Similarity=0.426  Sum_probs=106.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH-------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------   97 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-------------------------   97 (257)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++....    ...+.+.+|+.                         
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   79 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE----EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVK   79 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH----HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhh
Confidence            457899999999999999999976 479999999985421    11223333332                         


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeE
Q 039073           98 ----------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAF  137 (257)
Q Consensus        98 ----------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~  137 (257)
                                                              .++.|++.|+.|||++   +++|+||||+||+++.++.++
T Consensus        80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~k  156 (303)
T 1zy4_A           80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVK  156 (303)
T ss_dssp             ------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred             hhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEE
Confidence                                                    2455899999999999   999999999999999999999


Q ss_pred             EeeccCccccccCCCCCCc-cccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHH
Q 039073          138 VADFGTARLLHVDSSNRPY-EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVAL  215 (257)
Q Consensus       138 l~dfg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~  215 (257)
                      |+|||.+............ ...............|+..|+|||+              ..+. .++.++|+||+||++|
T Consensus       157 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~--------------~~~~~~~~~~~Di~slG~il~  222 (303)
T 1zy4_A          157 IGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV--------------LDGTGHYNEKIDMYSLGIIFF  222 (303)
T ss_dssp             ECCCCCCSCTTC-------------------------CTTSCHHH--------------HTSCSCCCTHHHHHHHHHHHH
T ss_pred             EeeCcchhhcccccchhccccccccccccccccCCCcccccCccc--------------ccCCCCCcchhhHHHHHHHHH
Confidence            9999998765432110000 0000000111233568899999554              4432 4688999999999999


Q ss_pred             HHHh
Q 039073          216 KVLM  219 (257)
Q Consensus       216 ell~  219 (257)
                      +|++
T Consensus       223 ~l~~  226 (303)
T 1zy4_A          223 EMIY  226 (303)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            9998

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.90  E-value=3.7e-24  Score=199.65  Aligned_cols=149  Identities=28%  Similarity=0.449  Sum_probs=117.7

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||.|+||.||+|.. .+|+.||||++....  .....+.+.+|+.++                        
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            47899999999999999999965 468999999987642  223345566666653                        


Q ss_pred             ------------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC---eEEee
Q 039073          100 ------------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE---AFVAD  140 (257)
Q Consensus       100 ------------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~---~~l~d  140 (257)
                                                          +.+++.|+.|||+.   +++|+||||+||+++.++.   ++|+|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcc
Confidence                                                33899999999999   9999999999999997665   89999


Q ss_pred             ccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC
Q 039073          141 FGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG  220 (257)
Q Consensus       141 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G  220 (257)
                      ||.+.........              ....||..|+|              ||...+..++.++|+||+|+++|+|++|
T Consensus       168 FG~a~~~~~~~~~--------------~~~~gt~~Y~A--------------PE~l~~~~~s~ksDIwSLGviLyeLltG  219 (676)
T 3qa8_A          168 LGYAKELDQGELC--------------TEFVGTLQYLA--------------PELLEQKKYTVTVDYWSFGTLAFECITG  219 (676)
T ss_dssp             CCCCCBTTSCCCC--------------CCCCSCCTTCS--------------SCSSCCSCCSTTHHHHHHHHHHHHHHSS
T ss_pred             ccccccccccccc--------------ccccCCcccCC--------------hHHhccCCCCchhHHHHHHHHHHHHHHC
Confidence            9998865432211              22468899999              6667777789999999999999999999


Q ss_pred             CCCCcc
Q 039073          221 THPGEL  226 (257)
Q Consensus       221 ~~Pf~~  226 (257)
                      ..||..
T Consensus       220 ~~Pf~~  225 (676)
T 3qa8_A          220 FRPFLP  225 (676)
T ss_dssp             CSSCCS
T ss_pred             CCCCCc
Confidence            999964

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.90  E-value=9.9e-24  Score=198.93  Aligned_cols=145  Identities=25%  Similarity=0.322  Sum_probs=115.9

Q ss_pred             ccccccceeeeecCceeEEEEEeC--CCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP--DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+.  +|+.||||++....  .......+..|+.+                        
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~  156 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD  156 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence            478999999999999999999764  68899999987542  22233445555544                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073           99 ------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                    +..|++.||.|||++   +|+||||||+||+++.+ .++|+|||++....
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~  232 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRIN  232 (681)
T ss_dssp             EEEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETT
T ss_pred             ceeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhcc
Confidence                                          445899999999999   99999999999999975 89999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..                 ....||+.|+|||++              .+. .+.++|||||||++|+|++|..||.+.
T Consensus       233 ~~-----------------~~~~gt~~y~aPE~~--------------~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~  279 (681)
T 2pzi_A          233 SF-----------------GYLYGTPGFQAPEIV--------------RTG-PTVATDIYTVGRTLAALTLDLPTRNGR  279 (681)
T ss_dssp             CC-----------------SCCCCCTTTSCTTHH--------------HHC-SCHHHHHHHHHHHHHHHHSCCCEETTE
T ss_pred             cC-----------------CccCCCccccCHHHH--------------cCC-CCCceehhhhHHHHHHHHhCCCCCccc
Confidence            22                 124689999995554              333 267999999999999999999998753

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.90  E-value=1.8e-24  Score=187.14  Aligned_cols=146  Identities=19%  Similarity=0.219  Sum_probs=111.9

Q ss_pred             hccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccc-----c----HHHHH--HHHH------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETE-----D----SAFVK--SFQN------------------   94 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~-----~----~~~~~--~~~~------------------   94 (257)
                      ..++|++.+.||+|+||+||+|.. +|+.||||++......     .    .....  .+.+                  
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            467899999999999999999987 6899999999764321     0    11111  0111                  


Q ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHHH
Q 039073           95 -----------------------------------------------------------------EAHVLSTSVAHALSY  109 (257)
Q Consensus        95 -----------------------------------------------------------------e~~~l~~~i~~~l~~  109 (257)
                                                                                       ++..+..|++.||.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                                                                             112245589999999


Q ss_pred             Hh-hCCCCCeEeeCCCCCCeEEcCCC--------------------CeEEeeccCccccccCCCCCCccccccCCCcccc
Q 039073          110 LH-HDCTLSIVHRDISSNNILLDSNL--------------------EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN  168 (257)
Q Consensus       110 LH-~~~~~~i~H~dLkp~nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (257)
                      || ++   +|+||||||+||+++.++                    .++|+|||+++.....                  
T Consensus       177 lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------------------  235 (336)
T 2vuw_A          177 AEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------------------  235 (336)
T ss_dssp             HHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------------------
T ss_pred             HHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------------------
Confidence            99 88   999999999999999887                    8999999999865421                  


Q ss_pred             cccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH-HHHHHhCCCCCcc
Q 039073          169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV-ALKVLMGTHPGEL  226 (257)
Q Consensus       169 ~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~-l~ell~G~~Pf~~  226 (257)
                      ...||+.|+|              ||.+.+.. +.++||||++++ .+++++|..||..
T Consensus       236 ~~~gt~~y~a--------------PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          236 IVVFCDVSMD--------------EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             EEECCCCTTC--------------SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             cEEEeecccC--------------hhhhcCCC-ccceehhhhhCCCCcccccccCCCcc
Confidence            2468999999              55555444 679999998777 6778899999975

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.89  E-value=1.3e-22  Score=172.60  Aligned_cols=130  Identities=28%  Similarity=0.390  Sum_probs=98.8

Q ss_pred             ccccccc-eeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH-----------------------------
Q 039073           45 TEEFHIK-YCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ-----------------------------   93 (257)
Q Consensus        45 ~~~~~~~-~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~-----------------------------   93 (257)
                      .++|.+. +.||+|+||.||+|.. .+++.||+|++........+ .....                             
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e-~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~   94 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARRE-VELHWRASQCPHIVRIVDVYENLYAGRKCLLIVM   94 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHH-HHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHH-HHHHHHhccCCCchhHHhhhhhhcCCCceEEEEE
Confidence            4668787 7899999999999965 57899999998643211100 00000                             


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeeccCccccc
Q 039073           94 ----------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADFGTARLLH  148 (257)
Q Consensus        94 ----------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~dfg~~~~~~  148 (257)
                                            .++..+..|++.||.|||++   +++|+||||+||+++.   ++.++|+|||++....
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           95 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             CCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             eecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence                                  11223556899999999999   9999999999999998   7889999999876432


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .                                                 ..++.++|+||+||++|+|++|+.||...
T Consensus       172 ~-------------------------------------------------~~~~~~~DiwslG~il~el~tg~~pf~~~  201 (299)
T 3m2w_A          172 G-------------------------------------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSN  201 (299)
T ss_dssp             T-------------------------------------------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC-
T ss_pred             c-------------------------------------------------ccCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            1                                                 11356899999999999999999999754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.77  E-value=2.9e-20  Score=171.73  Aligned_cols=139  Identities=16%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             eeecCceeEEEEE-eCCCCEEEEEEcCcccc-------ccHHHHHHHHHHHHHHH-------------------------
Q 039073           54 IGTGGYGSVYKAE-LPDGKVVALKKLHQSET-------EDSAFVKSFQNEAHVLS-------------------------  100 (257)
Q Consensus        54 lg~G~~g~V~~~~-~~~~~~vaiK~~~~~~~-------~~~~~~~~~~~e~~~l~-------------------------  100 (257)
                      .+.|+.|....+. .-.|+.|++|++.....       ..+...+.+.+|+++|.                         
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4445555554442 23588899999975421       11223456788888743                         


Q ss_pred             ------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCc
Q 039073          101 ------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPY  156 (257)
Q Consensus       101 ------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  156 (257)
                                              .||+.||+|+|++   ||+||||||+|||++.++.+||+|||+++........   
T Consensus       322 Eyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~---  395 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSW---  395 (569)
T ss_dssp             ECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---CC---
T ss_pred             ecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCCCcc---
Confidence                                    3899999999999   9999999999999999999999999999866433221   


Q ss_pred             cccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCC
Q 039073          157 EWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP  223 (257)
Q Consensus       157 ~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~P  223 (257)
                                ....+||+.|+|||++.              +. +...+|+||+|++++++.++..|
T Consensus       396 ----------~~t~vGTp~YmAPE~l~--------------g~-~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          396 ----------PTNLVQSFFVFVNELFA--------------EN-KSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             ----------SHHHHHHHHHHHHHHC--------------------------------CCCCTTHHH
T ss_pred             ----------ccCceechhhccHHHhC--------------CC-CCCcccccccccchhhhccccch
Confidence                      23467999999966553              22 35678999999988776655444

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.71  E-value=7.1e-17  Score=136.51  Aligned_cols=105  Identities=19%  Similarity=0.220  Sum_probs=82.7

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccH---------------HHHHHHHHHHHH----
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDS---------------AFVKSFQNEAHV----   98 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~---------------~~~~~~~~e~~~----   98 (257)
                      +..+......|.+.+.||+|+||.||+|...+|+.||+|+++.......               .....+.+|+.+    
T Consensus        82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            4455666777888899999999999999877799999999975322110               123445566554    


Q ss_pred             ------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073           99 ------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus        99 ------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                          ++.|++.|+.+||++   +++||||||+||+++ ++.++|+|||
T Consensus       162 ~~~~v~~~~~~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~DFG  237 (282)
T 1zar_A          162 QGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIIDFP  237 (282)
T ss_dssp             TTSSSCCEEEEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEECCCT
T ss_pred             cCCCcCeEEeccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEEECC
Confidence                                                344899999999999   999999999999999 9999999999


Q ss_pred             Cccc
Q 039073          143 TARL  146 (257)
Q Consensus       143 ~~~~  146 (257)
                      ++..
T Consensus       238 ~a~~  241 (282)
T 1zar_A          238 QSVE  241 (282)
T ss_dssp             TCEE
T ss_pred             CCeE
Confidence            9863

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.70  E-value=3.2e-17  Score=150.58  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=102.1

Q ss_pred             ccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHH-----HHHHHHHHHHHHH---------------------
Q 039073           47 EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSA-----FVKSFQNEAHVLS---------------------  100 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~-----~~~~~~~e~~~l~---------------------  100 (257)
                      .+...+.||+|+||.||+|.. .++.+++|+..........     ..+.+.+|++++.                     
T Consensus       337 ~~~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~  415 (540)
T 3en9_A          337 RKIPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKR  415 (540)
T ss_dssp             -----------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTE
T ss_pred             cCCCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccE
Confidence            334567899999999999944 5778899886543322221     2345677777643                     


Q ss_pred             ----------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073          101 ----------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus       101 ----------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                            .|++.|+.|||++   +|+||||||+||+++.  .++|+|||+++.........    
T Consensus       416 lVmE~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~----  486 (540)
T 3en9_A          416 IMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKA----  486 (540)
T ss_dssp             EEEECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHH----
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCccccc----
Confidence                                  4899999999999   9999999999999998  99999999998764321100    


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                        ...........||+.|+|||++....            ..|+..+|+||..+-..+...++.+|.
T Consensus       487 --~~~~~~~~~~~GT~~y~APEv~~~~~------------~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          487 --VDLIVFKKAVLSTHHEKFDEIWERFL------------EGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             --HHHHHHHHHHHHHCGGGHHHHHHHHH------------HHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             --cchhhhhhhhcCCCCcCCHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHhccccC
Confidence              00000112467999999976654321            225667899999998888888777663

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.57  E-value=2.5e-14  Score=119.18  Aligned_cols=105  Identities=24%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEe-CCCCE--EEEEEcCcccccc--------------------H-HHHHHHH
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAEL-PDGKV--VALKKLHQSETED--------------------S-AFVKSFQ   93 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~--vaiK~~~~~~~~~--------------------~-~~~~~~~   93 (257)
                      +..+.....-|++.+.||+|+||.||+|.. .+|+.  ||||+++......                    . .....+.
T Consensus        39 l~~~~~~~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (258)
T 1zth_A           39 LYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTE  118 (258)
T ss_dssp             HHHHHHTTSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHH
T ss_pred             HHHHHhCCCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHH
Confidence            445555555688999999999999999976 67888  9999875431110                    0 0011233


Q ss_pred             HHHHH---------------------------------------------------HHHHHHHHHHHHh-hCCCCCeEee
Q 039073           94 NEAHV---------------------------------------------------LSTSVAHALSYLH-HDCTLSIVHR  121 (257)
Q Consensus        94 ~e~~~---------------------------------------------------l~~~i~~~l~~LH-~~~~~~i~H~  121 (257)
                      +|+..                                                   ++.|++.++.+|| ++   +++||
T Consensus       119 ~E~~~l~~l~~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---givHr  195 (258)
T 1zth_A          119 KEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEA---ELVHA  195 (258)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTS---CEECS
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence            33332                                                   4458999999999 88   99999


Q ss_pred             CCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          122 DISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       122 dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ||||+||+++.  .++|+|||++...
T Consensus       196 Dlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          196 DLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             SCSTTSEEESS--SEEECCCTTCEET
T ss_pred             CCCHHHEEEcC--cEEEEECcccccC
Confidence            99999999998  8999999998754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.38  E-value=3.4e-12  Score=111.83  Aligned_cols=105  Identities=15%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccc---------------cHH---HHH-HHHHHHHH-
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETE---------------DSA---FVK-SFQNEAHV-   98 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~---------------~~~---~~~-~~~~e~~~-   98 (257)
                      ..+.+...-|++...||.|++|.||+|...+|+.||||+++.....               ...   ..+ ....|... 
T Consensus        88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL  167 (397)
T 4gyi_A           88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM  167 (397)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            3445555569999999999999999999889999999987643111               000   000 11122222 


Q ss_pred             ------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCC-
Q 039073           99 ------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLE-  135 (257)
Q Consensus        99 ------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~-  135 (257)
                                                                +..|++.++.+||.+   |++||||||.|||++.++. 
T Consensus       168 ~rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          168 KALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             HHHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECS
T ss_pred             HHHHhcCCCCCeeeeccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCc
Confidence                                                      344899999999999   9999999999999987763 


Q ss_pred             ---------eEEeeccCccc
Q 039073          136 ---------AFVADFGTARL  146 (257)
Q Consensus       136 ---------~~l~dfg~~~~  146 (257)
                               +.++||+-+..
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEE
T ss_pred             ccccccccceEEEEeCCccc
Confidence                     78999986543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.15  E-value=6.9e-06  Score=67.58  Aligned_cols=38  Identities=16%  Similarity=0.017  Sum_probs=30.9

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCc
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQ   80 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~   80 (257)
                      ....+.|++...++.|+.+.||++... ++.+++|+...
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~   47 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDS   47 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECG
T ss_pred             HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCc
Confidence            444567889999999999999999764 67899999864

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.01  E-value=1.9e-05  Score=64.39  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=25.7

Q ss_pred             eEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          118 IVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       118 i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ++|+|++|.||+++.++.+.+.||+.+...
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence            999999999999987665679999987644

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.52  E-value=4.7e-05  Score=64.13  Aligned_cols=32  Identities=38%  Similarity=0.604  Sum_probs=26.8

Q ss_pred             CCeEeeCCCCCCeEEcC--CCCeEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDS--NLEAFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~--~~~~~l~dfg~~~~~  147 (257)
                      ..++|+|++|.||+++.  ...+.+.||+.+...
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence            46899999999999997  455789999987654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.52  E-value=0.00025  Score=60.99  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=27.0

Q ss_pred             CCeEeeCCCCCCeEEcCCCC--eEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNLE--AFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~--~~l~dfg~~~~~  147 (257)
                      ..++|+|+++.||+++.++.  +.+.||+.+...
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence            57999999999999997753  589999987654

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.51  E-value=0.011  Score=48.94  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             ccccceeeeecCceeEEEEEeCCCCEEEEEEcCcc
Q 039073           47 EFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQS   81 (257)
Q Consensus        47 ~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~   81 (257)
                      ...-.+.+|.|..+.||+.+..+|+.|++|+....
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~   50 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDD   50 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTT
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCC
Confidence            45556789999999999999999999999986543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.31  E-value=0.044  Score=47.49  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..++|+|+.+.||+++.+ .+.+.||..+...
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G  257 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFYG  257 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCEEE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCcccccC
Confidence            478999999999999865 4889999876644

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=95.15  E-value=0.12  Score=41.87  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=26.2

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      .++|+|+.+.|++++..+.+-|.||+.+...
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence            3899999999999998776779999887654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.64  E-value=0.057  Score=45.32  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+.+.|++++.++.+.+.||+.+...
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g  253 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD  253 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEEC
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcccC
Confidence            358999999999999987788999999977543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=94.16  E-value=0.29  Score=40.81  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             CCeEeeCCCCCCeEEcC---CCCe-EEeeccCccccc
Q 039073          116 LSIVHRDISSNNILLDS---NLEA-FVADFGTARLLH  148 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~---~~~~-~l~dfg~~~~~~  148 (257)
                      ..++|+|+++.|++++.   ++.+ .|.||+.+...+
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd  226 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISD  226 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEEC
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCC
Confidence            46799999999999987   4554 799999876543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=90.83  E-value=0.24  Score=43.22  Aligned_cols=32  Identities=13%  Similarity=0.222  Sum_probs=27.7

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+++.||+++.++ +.+.||+.+...
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            34899999999999998776 999999887654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=87.18  E-value=0.17  Score=42.24  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..+++|+|+.+.|++++.++.+.+.||+.+...
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~g  218 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFACND  218 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhccCc
Confidence            347999999999999987765679999876543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=86.74  E-value=0.21  Score=42.32  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.8

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+.+.||+++....+.|.||+.+...
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~g  253 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVALG  253 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEcccccccC
Confidence            358999999999999996444689999887644

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=85.85  E-value=0.31  Score=40.90  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=28.2

Q ss_pred             CCCeEeeCCCCCCeEEcCC----CCeEEeeccCccccc
Q 039073          115 TLSIVHRDISSNNILLDSN----LEAFVADFGTARLLH  148 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~----~~~~l~dfg~~~~~~  148 (257)
                      ...++|+|+.+.||+++.+    +.+.+.||+.+...+
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~  219 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH  219 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence            4589999999999999864    678999999876543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=82.90  E-value=0.49  Score=39.41  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+++.||+++ + .+.+.||+.+...
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence            44789999999999998 4 7899999876644

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=82.55  E-value=0.49  Score=40.36  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=25.2

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..++|+|+.+.||+++.++ +.+.||..+...
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~g  242 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGFN  242 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCCC
Confidence            4799999999999998654 899999876643

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.46  E-value=0.49  Score=40.03  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             CCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       116 ~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      ..++|+|+.+.|++++.++.+.+.||+.+...+
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~  238 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAP  238 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEEC
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCC
Confidence            479999999999999987889999998766543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=81.60  E-value=0.69  Score=38.17  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=26.3

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ...++|+|+.+.|++ ..++.+.+.||..+...
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g  203 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGMN  203 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence            456999999999999 56677899999877644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-26
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-23
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-22
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-22
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-22
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-21
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-20
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-20
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-20
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-20
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-20
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-19
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-19
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-18
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-18
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-18
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-17
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-17
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-17
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	7e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-17
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	9e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	9e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-16
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-16
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-16
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-16
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-15
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-15
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-14
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	8e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	6e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	8e-12
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-11
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-07
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-08
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-11
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-10
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-10
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-08
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-10
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-10
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-09
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-09
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-09
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-07
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-08
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-05
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-07
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-06

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 2e-26
 Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 79/229 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---- 101
            +  +   IG+G +G+VYK +      VA+K L+ +       +++F+NE  VL      
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHV 64

Query: 102 -----------------------------------------------SVAHALSYLHHDC 114
                                                            A  + YLH   
Sbjct: 65  NILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS 124

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
              I+HRD+ SNNI L  +L   + DFG A +    S +  +            ++ G I
Sbjct: 125 ---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF-----------EQLSGSI 170

Query: 175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            + A           P  + +      + + DVY+FG+V  +++ G  P
Sbjct: 171 LWMA-----------PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-26
 Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 85/232 (36%)

Query: 44  ATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST- 101
             ++F     +G G  G V+K    P G V+A K +H       A       E  VL   
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHEC 61

Query: 102 --------------------------------------------------SVAHALSYLH 111
                                                             +V   L+YL 
Sbjct: 62  NSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                 I+HRD+  +NIL++S  E  + DFG +  L    +N                 +
Sbjct: 122 EKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF---------------V 164

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           G  SY +               E       + + D++S G+  +++ +G +P
Sbjct: 165 GTRSYMSP--------------ERLQGTHYSVQSDIWSMGLSLVEMAVGRYP 202

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 5e-23
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 74/227 (32%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
           E+F     +G G + +V  A EL   +  A+K L +        V     E  V+S    
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 67

Query: 102 ---------------------------------------------SVAHALSYLHHDCTL 116
                                                          A  +S L +    
Sbjct: 68  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK 127

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
            I+HRD+   NILL+ ++   + DFGTA++L  +S                N  +G   Y
Sbjct: 128 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA-----------NSFVGTAQY 176

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            +               EL       +  D+++ G +  +++ G  P
Sbjct: 177 VSP--------------ELLTEKSACKSSDLWALGCIIYQLVAGLPP 209

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.7 bits (227), Expect = 2e-22
 Identities = 56/279 (20%), Positives = 91/279 (32%), Gaps = 91/279 (32%)

Query: 37  SYEDLINATEEFH---------IKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSET 83
           ++ED   A  EF          I+  IG G +G V    L         VA+K L    T
Sbjct: 8   TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67

Query: 84  EDSAFVKSFQNEAHVLS------------------------------------------T 101
           E     + F +EA ++                                            
Sbjct: 68  EKQ--RRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF 125

Query: 102 SVAHALSY-------LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           +V   +         + +   ++ VHRD+++ NIL++SNL   V+DFG +R L  D+S+ 
Sbjct: 126 TVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD- 184

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                   T          I + A      R                T   DV+S+G+V 
Sbjct: 185 -------PTYTSALGGKIPIRWTAPEAIQYRK--------------FTSASDVWSYGIVM 223

Query: 215 LKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVN 253
            +V+               +   ++     D RL PP++
Sbjct: 224 WEVMSYGER-----PYWDMTNQDVINAIEQDYRLPPPMD 257

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 2e-22
 Identities = 50/230 (21%), Positives = 77/230 (33%), Gaps = 84/230 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQN---------- 94
           E+F I   +G G +G+VY A       ++ALK L +++ E +      +           
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 95  -----------------------------------------EAHVLSTSVAHALSYLHHD 113
                                                          T +A+ALSY H  
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHS- 124

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
               ++HRDI   N+LL S  E  +ADFG +   H  SS R               + G 
Sbjct: 125 --KRVIHRDIKPENLLLGSAGELKIADFGWSV--HAPSSRRTT-------------LCGT 167

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           + Y                 E+    +  EK D++S GV+  + L+G  P
Sbjct: 168 LDYLPP--------------EMIEGRMHDEKVDLWSLGVLCYEFLVGKPP 203

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 3e-22
 Identities = 40/226 (17%), Positives = 66/226 (29%), Gaps = 77/226 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVK--------------- 90
           E   ++  +G G +G V+         VA+K L        AF++               
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 76

Query: 91  ---------------------------------SFQNEAHVLSTSVAHALSYLHHDCTLS 117
                                                +   ++  +A  ++Y+       
Sbjct: 77  LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--- 133

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            VHRD+ + NIL+  NL   VADFG ARL+              +           I + 
Sbjct: 134 YVHRDLRAANILVGENLVCKVADFGLARLIE------------DNEYTARQGAKFPIKWT 181

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           A           P           T K DV+SFG++  ++      
Sbjct: 182 A-----------PEAAL---YGRFTIKSDVWSFGILLTELTTKGRV 213

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 1e-21
 Identities = 38/226 (16%), Positives = 67/226 (29%), Gaps = 77/226 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQ------------ 93
           E   +   +G G +G V+         VA+K L Q      AF+                
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 94  ------------------------------------NEAHVLSTSVAHALSYLHHDCTLS 117
                                               N+   ++  +A  ++++       
Sbjct: 73  LYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--- 129

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            +HRD+ + NIL+   L   +ADFG ARL+  +                       I + 
Sbjct: 130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR------------EGAKFPIKWT 177

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           A           P  +        T K DV+SFG++  +++     
Sbjct: 178 A-----------PEAIN---YGTFTIKSDVWSFGILLTEIVTHGRI 209

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (220), Expect = 2e-21
 Identities = 41/227 (18%), Positives = 69/227 (30%), Gaps = 79/227 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS-- 102
           ++F I   +GTG +G V+      +G+  A+K L +        V+   +E  +LS    
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 103 ----------------------------------------------VAHALSYLHHDCTL 116
                                                          A     L +  + 
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK 123

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
            I++RD+   NILLD N    + DFG A+ +                      + G   Y
Sbjct: 124 DIIYRDLKPENILLDKNGHIKITDFGFAKYVP----------------DVTYTLCGTPDY 167

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                            E+  T    +  D +SFG++  ++L G  P
Sbjct: 168 --------------IAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 200

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 79/227 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---- 101
            E      IG+G +G V+     +   VA+K + +    +    + F  EA V+      
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHP 60

Query: 102 ---------------------------------------------SVAHALSYLHHDCTL 116
                                                                + +    
Sbjct: 61  KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 120

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
            ++HRD+++ N L+  N    V+DFG  R +  D                       + +
Sbjct: 121 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP------------VKW 168

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            +               E+      + K DV+SFGV+  +V      
Sbjct: 169 AS--------------PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 201

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 3e-20
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 78/239 (32%)

Query: 38  YEDL---INATEEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQ 93
           YE +   +N  + + I   +G G +G VYKA+  +   + A K +     E+   ++ + 
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE---LEDYM 57

Query: 94  NEAHVLST------------------------------------------SVAHALSY-- 109
            E  +L++                                          + +       
Sbjct: 58  VEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCK 117

Query: 110 -----LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
                L++     I+HRD+ + NIL   + +  +ADFG +                T T+
Sbjct: 118 QTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAK-------------NTRTI 164

Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            + +  IG   + A               E +       K DV+S G+  +++     P
Sbjct: 165 QRRDSFIGTPYWMAPEV---------VMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 214

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 4e-20
 Identities = 43/228 (18%), Positives = 70/228 (30%), Gaps = 77/228 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVA 104
           E+F +   +G G +G V+ AE     +  A+K L +        V+    E  VLS +  
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 105 H-------------------------------------------------ALSYLHHDCT 115
           H                                                  +  L    +
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
             IV+RD+  +NILLD +    +ADFG  +   +  +             + N   G   
Sbjct: 122 KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA-------------KTNTFCGTPD 168

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           Y A      +                    D +SFGV+  ++L+G  P
Sbjct: 169 YIAPEILLGQK--------------YNHSVDWWSFGVLLYEMLIGQSP 202

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 4e-20
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 84/232 (36%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           +  +++     IG G  G+VY A ++  G+ VA+++++  +       +   NE  V+  
Sbjct: 17  DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRE 73

Query: 102 --------------------------------------------------SVAHALSYLH 111
                                                                 AL +LH
Sbjct: 74  NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH 133

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                 ++HRDI S+NILL  +    + DFG    +  + S R             + ++
Sbjct: 134 S---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR-------------STMV 177

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           G   + A               E+        K D++S G++A++++ G  P
Sbjct: 178 GTPYWMAP--------------EVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 4e-20
 Identities = 36/227 (15%), Positives = 59/227 (25%), Gaps = 76/227 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS-- 102
            +F     +G G +G V        G+  A+K L +        V     E+ VL  +  
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 103 ----------------------------------------------VAHALSYLHHDCTL 116
                                                          A  +S L +  + 
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR 124

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
            +V+RDI   N++LD +    + DFG  +    D +                   G   Y
Sbjct: 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT-------------FCGTPEY 171

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            A                           D +  GVV  +++ G  P
Sbjct: 172 LAPEVLEDND--------------YGRAVDWWGLGVVMYEMMCGRLP 204

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 7e-20
 Identities = 46/270 (17%), Positives = 79/270 (29%), Gaps = 81/270 (30%)

Query: 50  IKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV----------- 98
           ++  IG G +G V++ +   G+ VA+K     E               +           
Sbjct: 7   LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA 65

Query: 99  ---------------------------------------LSTSVAHALSYLHHDC----- 114
                                                  L+ S A  L++LH +      
Sbjct: 66  DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQG 125

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
             +I HRD+ S NIL+  N    +AD G A      +                N  +G  
Sbjct: 126 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT---------IDIAPNHRVGTK 176

Query: 175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLS--- 231
            Y A        N+  F           ++ D+Y+ G+V  ++      G +        
Sbjct: 177 RYMAPEVLDDSINMKHFE--------SFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 228

Query: 232 -----SSSGPKIMLIDVLDQRLSPPVNQKI 256
                S    + M   V +Q+L P +  + 
Sbjct: 229 YDLVPSDPSVEEMRKVVCEQKLRPNIPNRW 258

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.3 bits (208), Expect = 9e-20
 Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 79/239 (33%)

Query: 34  GKISYEDLINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSF 92
            ++ ++D  +  + F     IG G +G+VY A  + + +VVA+KK+  S  + +   +  
Sbjct: 5   AELFFKD--DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDI 62

Query: 93  QNEAHVLST-----------------------------------------SVAHALSY-- 109
             E   L                                                 +   
Sbjct: 63  IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTH 122

Query: 110 -----LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTL 164
                L +  + +++HRD+ + NILL       + DFG+A ++                 
Sbjct: 123 GALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA---------------- 166

Query: 165 PQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              N  +G   + A           P  +          K DV+S G+  +++     P
Sbjct: 167 -PANSFVGTPYWMA-----------PEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 213

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 48/263 (18%), Positives = 78/263 (29%), Gaps = 87/263 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
           E++ +   +G G YG V  A      + VA+K +      D    ++ + E  +      
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD--CPENIKKEICINKMLNH 62

Query: 102 ------------------------------------------------SVAHALSYLHHD 113
                                                            +   + YLH  
Sbjct: 63  ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG- 121

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
             + I HRDI   N+LLD      ++DFG A +   ++  R             NK+ G 
Sbjct: 122 --IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL-----------NKMCGT 168

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSSS 233
           + Y A     +R                 E  DV+S G+V   +L G  P          
Sbjct: 169 LPYVAPELLKRRE-------------FHAEPVDVWSCGIVLTAMLAGELP------WDQP 209

Query: 234 SGPKIMLIDVLDQRLSPPVNQKI 256
           S       D  +++      +KI
Sbjct: 210 SDSCQEYSDWKEKKTYLNPWKKI 232

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 83.4 bits (205), Expect = 2e-19
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 75/226 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---- 101
           E++H    IG G YG VYKA+   G+  ALKK+   E ED     +   E  +L      
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRL-EKEDEGIPSTTIREISILKELKHS 60

Query: 102 --------------------------------------------SVAHALSYLHHDCTLS 117
                                                        +   L+ + +     
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
           ++HRD+   N+L++   E  +ADFG AR   +      +              I  + Y 
Sbjct: 121 VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH-------------EIVTLWYR 167

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           A                L  +   +   D++S G +  +++ GT  
Sbjct: 168 A-------------PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 4e-19
 Identities = 47/242 (19%), Positives = 70/242 (28%), Gaps = 84/242 (34%)

Query: 36  ISYEDLINATEEFHIKYCIGTGGYGSVYKAELPDGK----VVALKKLHQSETEDSAFVKS 91
           I    LI      H    IG G +G VY   L D        A+K L++    D   V  
Sbjct: 22  IGPSSLI-----VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQ 74

Query: 92  FQNEAHVLSTS------------------------------------------------- 102
           F  E  ++                                                    
Sbjct: 75  FLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG 134

Query: 103 -VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALT 161
                   +    +   VHRD+++ N +LD      VADFG AR ++             
Sbjct: 135 FGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE---------F 185

Query: 162 DTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT 221
           D++         + + AL              E   T   T K DV+SFGV+  +++   
Sbjct: 186 DSVHNKTGAKLPVKWMAL--------------ESLQTQKFTTKSDVWSFGVLLWELMTRG 231

Query: 222 HP 223
            P
Sbjct: 232 AP 233

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (201), Expect = 7e-19
 Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 88/271 (32%)

Query: 37  SYEDLINATEEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNE 95
           +Y+       +  +K+ +G G YG VY+         VA+K L     ED+  V+ F  E
Sbjct: 8   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKE 63

Query: 96  AHVLST-------------------------------------------------SVAHA 106
           A V+                                                    +A  
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ 123

Query: 107 LSYLHHDC-TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLP 165
           +S         + +HRD+++ N L+  N    VADFG +RL+              DT  
Sbjct: 124 ISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT------------GDTYT 171

Query: 166 QVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE 225
                   I + A           P  +        + K DV++FGV+  ++        
Sbjct: 172 AHAGAKFPIKWTA-----------PESL---AYNKFSIKSDVWAFGVLLWEIATYGMSPY 217

Query: 226 LLSSLSSSSGPKIMLIDVLDQRLSPPVNQKI 256
               LS        + ++L++       +  
Sbjct: 218 PGIDLSQ-------VYELLEKDYRMERPEGC 241

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 7e-19
 Identities = 49/265 (18%), Positives = 76/265 (28%), Gaps = 87/265 (32%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDG-----KVVALKKLHQSETEDSAFVKSFQNEAHVLS 100
                +  IG G +G VYK  L          VA+K L    TE       F  EA ++ 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ--RVDFLGEAGIMG 64

Query: 101 T------------------------------------------SVAHALSYL-------H 111
                                                      SV   +  L        
Sbjct: 65  QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMK 124

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
           +   ++ VHRD+++ NIL++SNL   V+DFG +R+L  D                 +   
Sbjct: 125 YLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT----------YTTSGGK 174

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLS 231
             I + A               E       T   DV+SFG+V  +V+             
Sbjct: 175 IPIRWTAP--------------EAISYRKFTSASDVWSFGIVMWEVMTYGER-------P 213

Query: 232 SSSGPKIMLIDVLDQRLSPPVNQKI 256
                   ++  ++     P     
Sbjct: 214 YWELSNHEVMKAINDGFRLPTPMDC 238

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 2e-18
 Identities = 48/232 (20%), Positives = 74/232 (31%), Gaps = 78/232 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSE-TEDSAFVKSFQNEAHVLS 100
           E F +   +GTG YG V+          GK+ A+K L ++   + +   +  + E  VL 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 101 T-------------------------------------------------SVAHALSYLH 111
                                                              V   +  L 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE 143

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
           H   L I++RDI   NILLDSN    + DFG ++    D + R Y++             
Sbjct: 144 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF------------C 191

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           G I Y A              +         +  D +S GV+  ++L G  P
Sbjct: 192 GTIEYMA------------PDIVRGGDSGHDKAVDWWSLGVLMYELLTGASP 231

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 2e-18
 Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 86/237 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVA-----------------------LKKLH-- 79
           E++ + Y IGTG YG   K     DGK++                        L++L   
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 80  ---------QSETEDSAFV--------------------KSFQNEAHVLS--TSVAHALS 108
                       T  + ++                    + + +E  VL   T +  AL 
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 123

Query: 109 YLH--HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQ 166
             H   D   +++HRD+   N+ LD      + DFG AR+L+ D+S              
Sbjct: 124 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA------------ 171

Query: 167 VNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
               +G   Y +               E    M   EK D++S G +  ++     P
Sbjct: 172 -KAFVGTPYYMSP--------------EQMNRMSYNEKSDIWSLGCLLYELCALMPP 213

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 79.4 bits (195), Expect = 4e-18
 Identities = 46/232 (19%), Positives = 73/232 (31%), Gaps = 77/232 (33%)

Query: 45  TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-- 101
           ++ + +   +G GG   V+ A  L   + VA+K L      D +F   F+ EA   +   
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 102 -------------------------------------------SVAHALSY-------LH 111
                                                      +   A+         L+
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 112 HDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKII 171
                 I+HRD+   NI++ +     V DFG AR +              +++ Q   +I
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG----------NSVTQTAAVI 175

Query: 172 GCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           G   Y +               E A    V  + DVYS G V  +VL G  P
Sbjct: 176 GTAQYLSP--------------EQARGDSVDARSDVYSLGCVLYEVLTGEPP 213

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 5e-18
 Identities = 36/227 (15%), Positives = 71/227 (31%), Gaps = 76/227 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS---- 100
           +++     IG G YG+V+KA+     ++VALK++   + +D     S   E  +L     
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRL-DDDDEGVPSSALREICLLKELKH 60

Query: 101 --------------------------------------------TSVAHALSYLHHDCTL 116
                                                       + +   L  L    + 
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR 120

Query: 117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISY 176
           +++HRD+   N+L++ N E  +A+FG AR   +                  +  +  + Y
Sbjct: 121 NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY-------------SAEVVTLWY 167

Query: 177 YALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                 F                  +   D++S G +  ++     P
Sbjct: 168 RPPDVLFGAKL-------------YSTSIDMWSAGCIFAELANAGRP 201

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 77/226 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQ------------ 93
           ++      +GTG +G V   +      VA+K + +    +  F++  +            
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ 63

Query: 94  ------------------------------------NEAHVLSTSVAHALSYLHHDCTLS 117
                                                +   +   V  A+ YL       
Sbjct: 64  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ--- 120

Query: 118 IVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
            +HRD+++ N L++      V+DFG +R +              D           + + 
Sbjct: 121 FLHRDLAARNCLVNDQGVVKVSDFGLSRYVL------------DDEYTSSVGSKFPVRWS 168

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                                   + K D+++FGV+  ++      
Sbjct: 169 PPEVLMYSK--------------FSSKSDIWAFGVLMWEIYSLGKM 200

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 47/254 (18%), Positives = 78/254 (30%), Gaps = 88/254 (34%)

Query: 54  IGTGGYGSVYKAELPD---GKVVALKKLHQSETEDSAFVKSFQNEAHVLS---------- 100
           +G+G +G+V K         K VA+K L  +E  D A       EA+V+           
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILK-NEANDPALKDELLAEANVMQQLDNPYIVRM 73

Query: 101 ----------------------------------------TSVAHALSYLHHDCTLSIVH 120
                                                     V+  + YL        VH
Sbjct: 74  IGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVH 130

Query: 121 RDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALW 180
           RD+++ N+LL +   A ++DFG ++ L  D           +           + +YA  
Sbjct: 131 RDLAARNVLLVTQHYAKISDFGLSKALRAD----------ENYYKAQTHGKWPVKWYAP- 179

Query: 181 FYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLSSLSSSSGPKIM 239
                        E       + K DV+SFGV+  +    G  P           G ++ 
Sbjct: 180 -------------ECINYYKFSSKSDVWSFGVLMWEAFSYGQKP------YRGMKGSEVT 220

Query: 240 LIDVLDQRLSPPVN 253
            +    +R+  P  
Sbjct: 221 AMLEKGERMGCPAG 234

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 4e-17
 Identities = 39/226 (17%), Positives = 65/226 (28%), Gaps = 87/226 (38%)

Query: 54  IGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLST----------- 101
           IG G + +VYK    +    VA  +L   +   S   + F+ EA +L             
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKS-ERQRFKEEAEMLKGLQHPNIVRFYD 75

Query: 102 ----------------------------------SVAHALSYLH---------HDCTLSI 118
                                              +    S+           H  T  I
Sbjct: 76  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPI 135

Query: 119 VHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYY 177
           +HRD+  +NI +        + D G A L     +                 +IG   + 
Sbjct: 136 IHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKA---------------VIGTPEFM 180

Query: 178 ALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           A   Y +++                E  DVY+FG+  L++    +P
Sbjct: 181 APEMYEEKY---------------DESVDVYAFGMCMLEMATSEYP 211

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 5e-17
 Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 80/231 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKV----VALKKLHQSETEDSAFVKSFQNEAHVLS 100
            EF     +G+G +G+VYK   +P+G+     VA+K+L ++ +      K   +EA+V++
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK--ANKEILDEAYVMA 66

Query: 101 T-----------------------------------------SVAHALSY-------LHH 112
           +                                            + L++       +++
Sbjct: 67  SVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY 126

Query: 113 DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
                +VHRD+++ N+L+ +     + DFG A+LL  +           +          
Sbjct: 127 LEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE-----------EKEYHAEGGKV 175

Query: 173 CISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            I + AL              E     + T + DV+S+GV   +++     
Sbjct: 176 PIKWMAL--------------ESILHRIYTHQSDVWSYGVTVWELMTFGSK 212

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 7e-17
 Identities = 42/228 (18%), Positives = 66/228 (28%), Gaps = 77/228 (33%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS-- 102
           E F     IG G YG VYKA     G+VVALKK+   +TE      +   E  +L     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60

Query: 103 -----------------------------------------------VAHALSYLHHDCT 115
                                                          +   L  L    +
Sbjct: 61  PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120

Query: 116 LSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCIS 175
             ++HRD+   N+L+++     +ADFG AR   V                     +  + 
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY-------------THEVVTLW 167

Query: 176 YYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           Y A                L      +   D++S G +  +++     
Sbjct: 168 YRA-------------PEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL 202

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 7e-17
 Identities = 33/233 (14%), Positives = 59/233 (25%), Gaps = 82/233 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           ++  +   +G G +G V + E          VA+K L          +  F  E + + +
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 102 ---------------------------------------------------SVAHALSYL 110
                                                               VA  + YL
Sbjct: 68  LDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL 127

Query: 111 HHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
                   +HRD+++ N+LL +     + DFG  R L  +           D        
Sbjct: 128 ESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQND----------DHYVMQEHR 174

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
               ++ A      R                +   D + FGV   ++      
Sbjct: 175 KVPFAWCAPESLKTRT--------------FSHASDTWMFGVTLWEMFTYGQE 213

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 76.3 bits (187), Expect = 9e-17
 Identities = 47/254 (18%), Positives = 78/254 (30%), Gaps = 90/254 (35%)

Query: 26  VFSVWNYD----GKISYEDLINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQ 80
           VF +W        +I ++ +++    + I   +GTG +G V++  E   G   A K +  
Sbjct: 5   VFDIWKQYYPQPVEIKHDHVLD---HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT 61

Query: 81  SETEDSAFVKSFQNEAHVLST--------------------------------------- 101
               D    ++ + E   +S                                        
Sbjct: 62  PHESD---KETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH 118

Query: 102 ---SVAHALSY-------LHHDCTLSIVHRDISSNNILLDS--NLEAFVADFGTARLLHV 149
              S   A+ Y       L H    + VH D+   NI+  +  + E  + DFG    L  
Sbjct: 119 NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL-- 176

Query: 150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYS 209
                       D    V    G   + A           P   E+A    V    D++S
Sbjct: 177 ------------DPKQSVKVTTGTAEFAA-----------P---EVAEGKPVGYYTDMWS 210

Query: 210 FGVVALKVLMGTHP 223
            GV++  +L G  P
Sbjct: 211 VGVLSYILLSGLSP 224

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 9e-17
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 87/229 (37%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---- 101
           +E  +   IG G +G V   +   G  VA+K +      + A  ++F  EA V++     
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK-----NDATAQAFLAEASVMTQLRHS 60

Query: 102 ----------------------------------------SVAHALSY-------LHHDC 114
                                                        L +       + +  
Sbjct: 61  NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 120

Query: 115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
             + VHRD+++ N+L+  +  A V+DFG  +                            +
Sbjct: 121 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK----------------LPV 164

Query: 175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            + A               E       + K DV+SFG++  ++      
Sbjct: 165 KWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRV 199

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 42/241 (17%), Positives = 70/241 (29%), Gaps = 85/241 (35%)

Query: 39  EDLINATEEFHI-KYCIGTGGYGSVYKAEL---PDGKVVALKKLHQSETEDSAFVKSFQN 94
           + L    +   I    +G G +GSV +           VA+K L Q    + A  +    
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMR 58

Query: 95  EAHVLST---------------------------------------------------SV 103
           EA ++                                                      V
Sbjct: 59  EAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQV 118

Query: 104 AHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDT 163
           +  + YL      + VHRD+++ N+LL +   A ++DFG ++ L  D S      A    
Sbjct: 119 SMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWP 175

Query: 164 LPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVL-MGTH 222
           L            +                        + + DV+S+GV   + L  G  
Sbjct: 176 L-----------KWYAPECINFRKF-------------SSRSDVWSYGVTMWEALSYGQK 211

Query: 223 P 223
           P
Sbjct: 212 P 212

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 44/237 (18%), Positives = 66/237 (27%), Gaps = 84/237 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLH------QSETEDSAFVKSFQNEAHV 98
           E +  K  +G G    V +    P  K  A+K +        S  E     ++   E  +
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 99  LSTSVAH----------------------------------------------------A 106
           L     H                                                     
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 122

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQ 166
           +  LH    L+IVHRD+   NILLD ++   + DFG +  L      R            
Sbjct: 123 ICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV---------- 169

Query: 167 VNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                G  SY A        N               ++ D++S GV+   +L G+ P
Sbjct: 170 ----CGTPSYLAPEIIECSMNDNHPG--------YGKEVDMWSTGVIMYTLLAGSPP 214

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.5 bits (182), Expect = 4e-16
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 85/230 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
           ++F     +GTG +G V   +    G   A+K L + +      ++   NE  +L     
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 102 ------------------------------------------------SVAHALSYLHHD 113
                                                            +     YLH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHS- 159

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
             L +++RD+   N+L+D      V DFG A+ +                  +   + G 
Sbjct: 160 --LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK----------------GRTWTLCGT 201

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                               E+  +    +  D ++ GV+  ++  G  P
Sbjct: 202 PEAL--------------APEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 8e-16
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 77/235 (32%)

Query: 41  LINATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
           + +    +     IG G YG V  A +  +   VA+KK+   E +   + +    E  +L
Sbjct: 3   VFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQT--YCQRTLREIKIL 60

Query: 100 ST--------------------------------------------SVAHALSY------ 109
                                                         S  H   +      
Sbjct: 61  LRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILR 120

Query: 110 -LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVN 168
            L +  + +++HRD+  +N+LL++  +  + DFG AR+   D  +  +            
Sbjct: 121 GLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLT---------- 170

Query: 169 KIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           + +    Y A                +  +   T+  D++S G +  ++L     
Sbjct: 171 EYVATRWYRA-------------PEIMLNSKGYTKSIDIWSVGCILAEMLSNRPI 212

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 1e-15
 Identities = 40/229 (17%), Positives = 65/229 (28%), Gaps = 82/229 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVK-------------- 90
           E++ I   +G G +G V++  E    K    K +    T+     K              
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNIL 64

Query: 91  ----SFQNEAHV------------------------------LSTSVAHALSYLHHDCTL 116
               SF++   +                                  V  AL +LH     
Sbjct: 65  HLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS---H 121

Query: 117 SIVHRDISSNNILLDSNLEAFV--ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCI 174
           +I H DI   NI+  +   + +   +FG AR L    + R    A               
Sbjct: 122 NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTA--------------- 166

Query: 175 SYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
             Y      Q                V+   D++S G +   +L G +P
Sbjct: 167 PEYYAPEVHQHDV-------------VSTATDMWSLGTLVYVLLSGINP 202

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 41/230 (17%), Positives = 68/230 (29%), Gaps = 80/230 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD----GKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           E   +  CIG G +G V++            VA+K      ++     + F  EA  +  
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS--VREKFLQEALTMRQ 64

Query: 102 -----------------------------------------SVAHALSY-------LHHD 113
                                                     +A  + Y       L + 
Sbjct: 65  FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 124

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            +   VHRDI++ N+L+ SN    + DFG +R +   +  +             +K    
Sbjct: 125 ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYK------------ASKGKLP 172

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           I + A               E       T   DV+ FGV   ++LM    
Sbjct: 173 IKWMA--------------PESINFRRFTSASDVWMFGVCMWEILMHGVK 208

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 72.4 bits (177), Expect = 2e-15
 Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 83/230 (36%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVK-------------- 90
           + + I   +G+G +G V++  E   G+V   K ++     D   VK              
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 91  -----SFQNEAHV------------------------------LSTSVAHALSYLHHDCT 115
                +F+++  +                                      L ++H    
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE--- 145

Query: 116 LSIVHRDISSNNILLDSNLEAFV--ADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            SIVH DI   NI+ ++   + V   DFG A  L+ D   +                   
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT--------------TAT 191

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
             + A               E+     V    D+++ GV+   +L G  P
Sbjct: 192 AEFAA--------------PEIVDREPVGFYTDMWAIGVLGYVLLSGLSP 227

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 77/221 (34%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDS--AFVKSFQNEAHVLSTS-------- 102
           +G G + +VYKA      ++VA+KK+      ++     ++   E  +L           
Sbjct: 6   LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65

Query: 103 ----------------------------------------VAHALSYLHHDCTLSIVHRD 122
                                                   +   L  L +     I+HRD
Sbjct: 66  LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRD 125

Query: 123 ISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFY 182
           +  NN+LLD N    +ADFG A+             +           +    Y A    
Sbjct: 126 LKPNNLLLDENGVLKLADFGLAK-------------SFGSPNRAYTHQVVTRWYRA---- 168

Query: 183 FQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                       L    +     D+++ G +  ++L+    
Sbjct: 169 ---------PELLFGARMYGVGVDMWAVGCILAELLLRVPF 200

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (169), Expect = 2e-14
 Identities = 42/230 (18%), Positives = 64/230 (27%), Gaps = 80/230 (34%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQSETEDSAFVKSFQNEAHVLST--- 101
            +F +   IG GG+G VY     D GK+ A+K L +   +         NE  +LS    
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 102 ----SVAHALSYLHHDCTLSIV-------------------------------------- 119
                +       H    LS +                                      
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 120 ------HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
                 +RD+   NILLD +    ++D G A                     + +  +G 
Sbjct: 124 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK---------------KPHASVGT 168

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
             Y A                L   +      D +S G +  K+L G  P
Sbjct: 169 HGYMA-------------PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 205

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 2e-14
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 84/237 (35%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDS---AFVKSFQNEAHV 98
           N  + +     +G+G +  V K  E   G   A K + +  T+ S      +  + E  +
Sbjct: 7   NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 66

Query: 99  LST------------------------------------------------SVAHALSYL 110
           L                                                   +   L+ +
Sbjct: 67  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGV 126

Query: 111 HHDCTLSIVHRDISSNNILLDSN----LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQ 166
           ++  +L I H D+   NI+L           + DFG A  +   +  +            
Sbjct: 127 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNI---------- 176

Query: 167 VNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                G   + A               E+     +  + D++S GV+   +L G  P
Sbjct: 177 ----FGTPEFVAP--------------EIVNYEPLGLEADMWSIGVITYILLSGASP 215

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 6e-14
 Identities = 45/236 (19%), Positives = 74/236 (31%), Gaps = 88/236 (37%)

Query: 43  NATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           +  + +  +  +GTG +  V  AE     K+VA+K + +   E      S +NE  VL  
Sbjct: 6   DIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG--KEGSMENEIAVLHK 63

Query: 102 ---------------------------------------------------SVAHALSYL 110
                                                               V  A+ YL
Sbjct: 64  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 123

Query: 111 HHDCTLSIVHRDISSNNILL---DSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQV 167
           H      IVHRD+   N+L    D + +  ++DFG +++    S               +
Sbjct: 124 HDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS--------------VL 166

Query: 168 NKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
           +   G   Y A           P  +        ++  D +S GV+A  +L G  P
Sbjct: 167 STACGTPGYVA-----------PEVLA---QKPYSKAVDCWSIGVIAYILLCGYPP 208

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 67.5 bits (164), Expect = 8e-14
 Identities = 33/259 (12%), Positives = 69/259 (26%), Gaps = 82/259 (31%)

Query: 48  FHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAH- 105
           + +   IG G +G +++   L + + VA+K   +            ++E           
Sbjct: 7   YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA-----PQLRDEYRTYKLLAGCT 61

Query: 106 ------------------------------------------------ALSYLHHDCTLS 117
                                                            L+ +      S
Sbjct: 62  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS 121

Query: 118 IVHRDISSNNILLDSNL-----EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
           +V+RDI  +N L+           +V DFG  +      + +   +           + G
Sbjct: 122 LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKN------LSG 175

Query: 173 CISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLSSLSS 232
              Y ++                      + + D+ + G V +  L G+ P + L + ++
Sbjct: 176 TARYMSI--------------NTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN 221

Query: 233 SSGPKIMLIDVLDQRLSPP 251
               K   I    Q     
Sbjct: 222 KQ--KYERIGEKKQSTPLR 238

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 68/224 (30%)

Query: 48  FHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFV-----KSFQNEAHV--- 98
           + +   IG+G +G +Y    +  G+ VA+K            +     K  Q    +   
Sbjct: 9   YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTI 68

Query: 99  ------------------------------------LSTSVAHALSYLHHDCTLSIVHRD 122
                                               +       +S + +  + + +HRD
Sbjct: 69  RWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRD 128

Query: 123 ISSNNIL---LDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL 179
           +  +N L          ++ DFG A+      +++   +           + G   Y + 
Sbjct: 129 VKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN------LTGTARYAS- 181

Query: 180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                        +     +  + + D+ S G V +   +G+ P
Sbjct: 182 -------------INTHLGIEQSRRDDLESLGYVLMYFNLGSLP 212

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 28/129 (21%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNR 154
           E   ++  VA  ++YL        VHRD+++ N L+  N+   +ADFG +R ++      
Sbjct: 141 EQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSA---- 193

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                  D           I +                 E  +    T + DV+++GVV 
Sbjct: 194 -------DYYKADGNDAIPIRWMP--------------PESIFYNRYTTESDVWAYGVVL 232

Query: 215 LKVLMGTHP 223
            ++      
Sbjct: 233 WEIFSYGLQ 241

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 37  SYEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVK 90
               L            IG G +G V++A  P         +VA+K L +  + D     
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD--MQA 61

Query: 91  SFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILL 130
            FQ EA +++           +   + ++        + L
Sbjct: 62  DFQREAALMAE--------FDNPNIVKLLGVCAVGKPMCL 93

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 40/233 (17%), Positives = 66/233 (28%), Gaps = 84/233 (36%)

Query: 47  EFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKS---FQNEAHVLST- 101
           ++ +   +G+GG+GSVY    + D   VA+K + +    D   + +      E  +L   
Sbjct: 5   QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 102 -------------------------------------------SVAHALSY-------LH 111
                                                          A S+       + 
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVR 124

Query: 112 HDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKI 170
           H     ++HRDI   NIL+D N  E  + DFG+  LL                       
Sbjct: 125 HCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT---------------VYTDF 169

Query: 171 IGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            G   Y                  + Y         V+S G++   ++ G  P
Sbjct: 170 DGTRVYSP-------------PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 209

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 5e-12
 Identities = 48/231 (20%), Positives = 75/231 (32%), Gaps = 85/231 (36%)

Query: 48  FHIKYCIGTGGYGSVYKAELPD-GKVVALKKLHQ-------------------------- 80
           +     IG G +G VY+A+L D G++VA+KK+ Q                          
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81

Query: 81  ----SETEDSAFV---------------KSFQNEAHVLSTS--------VAHALSYLHHD 113
                E +D  ++               + +      L           +  +L+Y+H  
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS- 140

Query: 114 CTLSIVHRDISSNNILLDSNLEAF-VADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIG 172
               I HRDI   N+LLD +     + DFG+A+ L     N  Y                
Sbjct: 141 --FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYIC-------------- 184

Query: 173 CISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
              Y A    F   +              T   DV+S G V  ++L+G   
Sbjct: 185 SRYYRAPELIFGATD-------------YTSSIDVWSAGCVLAELLLGQPI 222

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 8e-12
 Identities = 32/249 (12%), Positives = 66/249 (26%), Gaps = 92/249 (36%)

Query: 28  SVWNYDGKISYEDLINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDS 86
             W+Y+   S+       +++ +   +G G Y  V++A  + + + V +K L   +    
Sbjct: 20  EYWDYE---SHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---- 72

Query: 87  AFVKSFQNEAHVLSTSVAH----------------------------------------- 105
              K  + E  +L                                               
Sbjct: 73  --KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYD 130

Query: 106 ----------ALSYLHHDCTLSIVHRDISSNNILLDS-NLEAFVADFGTARLLHVDSSNR 154
                     AL Y H      I+HRD+  +N+++D  + +  + D+G A   H      
Sbjct: 131 IRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYN 187

Query: 155 PYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVA 214
                           +    +                             D++S G + 
Sbjct: 188 VR--------------VASRYFKGPELLVDYQM-------------YDYSLDMWSLGCML 220

Query: 215 LKVLMGTHP 223
             ++    P
Sbjct: 221 ASMIFRKEP 229

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-11
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 28/130 (21%)

Query: 94  NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
            +    +  VA  + +L      S VHRD+++ N+L+       + DFG AR +  DS+ 
Sbjct: 164 EDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY 220

Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                               + + A    F+                 T K DV+S+G++
Sbjct: 221 VVRGN-----------ARLPVKWMAPESLFEGI--------------YTIKSDVWSYGIL 255

Query: 214 ALKVLMGTHP 223
             ++      
Sbjct: 256 LWEIFSLGVN 265

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 46  EEFHIKYCIGTGGYGSVYKAELPD------GKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
           E       +G+G +G V  A             VA+K L   E  DS+  ++  +E  ++
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLK--EKADSSEREALMSELKMM 94

Query: 100 STSVAH 105
           +   +H
Sbjct: 95  TQLGSH 100

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
           +   L+ L++     I+HRD+ + N+L+  +    +ADFG AR   +  +++P  +    
Sbjct: 123 MQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY---- 178

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
                   +  + Y          +                  D++  G +  ++   + 
Sbjct: 179 -----TNRVVTLWYRPPELLLGERD-------------YGPPIDLWGAGCIMAEMWTRSP 220

Query: 223 P 223
            
Sbjct: 221 I 221

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 41  LINATEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
             +   ++     IG G +G V+KA     G+ VALKK+   E E   F  +   E  +L
Sbjct: 5   FCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLM-ENEKEGFPITALREIKIL 63

Query: 100 STSVAHALSYLHHDCTLSIVHRDISSNNILL 130
                  +  L   C       +    +I L
Sbjct: 64  QLLKHENVVNLIEICRTKASPYNRCKGSIYL 94

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 4e-11
 Identities = 38/244 (15%), Positives = 69/244 (28%), Gaps = 87/244 (35%)

Query: 37  SYEDLINATEEFHIKY----CIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKS 91
             +++     E    Y     +G+G YG+V  A +   G  VA+KKL++   +   F K 
Sbjct: 5   YRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR-PFQSELFAKR 63

Query: 92  FQNEAHVLST---------------------------------------------SVAHA 106
              E  +L                                                    
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRI 123

Query: 107 LSY-------LHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA 159
                     L +     I+HRD+   N+ ++ + E  + DFG AR              
Sbjct: 124 QFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD----------- 172

Query: 160 LTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM 219
                 ++   +    Y A                +   M  T+  D++S G +  +++ 
Sbjct: 173 -----SEMTGYVVTRWYRA-------------PEVILNWMRYTQTVDIWSVGCIMAEMIT 214

Query: 220 GTHP 223
           G   
Sbjct: 215 GKTL 218

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 40/224 (17%), Positives = 64/224 (28%), Gaps = 85/224 (37%)

Query: 54  IGTGGYGSVYKAE-LPDGKVVALKKL---HQSETEDSAFVKSFQ---------------- 93
           +G G  G V +       +  ALK L    ++  E     ++ Q                
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYA 79

Query: 94  -------------------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRD 122
                                           EA  +  S+  A+ YLH    ++I HRD
Sbjct: 80  GRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRD 136

Query: 123 ISSNNILLDSNLE---AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYAL 179
           +   N+L  S        + DFG A+     +S     +                 Y A 
Sbjct: 137 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--------------TPYYVA- 181

Query: 180 WFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                         E+       + CD++S GV+   +L G  P
Sbjct: 182 -------------PEVLGPEKYDKSCDMWSLGVIMYILLCGYPP 212

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 34/163 (20%)

Query: 94  NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
            +    S  VA  +++L        +HRD+++ NILL       + DFG AR +  DS+ 
Sbjct: 145 EDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                               + + A    F                  T + DV+S+G+ 
Sbjct: 202 VVKGN-----------ARLPVKWMAPESIFNCVY--------------TFESDVWSYGIF 236

Query: 214 ALKVLMGTHPGELLSSLSSSSGPKIMLIDVLDQRLSPPVNQKI 256
             ++                         ++ +       +  
Sbjct: 237 LWELFSLGSSPY------PGMPVDSKFYKMIKEGFRMLSPEHA 273

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
                   +G G +G V +A             VA+K L  S        ++  +E  VL
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT--EREALMSELKVL 80

Query: 100 STSVAH 105
           S    H
Sbjct: 81  SYLGNH 86

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 28/121 (23%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
            A     + +      +HRD+++ NIL+  N  A +ADFG +R   V             
Sbjct: 133 AADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK--------- 183

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
                      + + A+                      T   DV+S+GV+  +++    
Sbjct: 184 -----TMGRLPVRWMAIESLNYSVY--------------TTNSDVWSYGVLLWEIVSLGG 224

Query: 223 P 223
            
Sbjct: 225 T 225

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 27/204 (13%)

Query: 45  TEEFHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST-- 101
            E +     +G+G YGSV  A     G  VA+KKL +   +     K    E  +L    
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-PFQSIIHAKRTYRELRLLKHMK 75

Query: 102 --------SVAHALSYLHHDCTLSIV--HRDISSNNILLDSNLEAFVADFGTARLL---- 147
                    V      L     + +V        NNI+    L      F   ++L    
Sbjct: 76  HENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLK 135

Query: 148 --------HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM 199
                   H D             L  ++  +   +   +  Y          + L +  
Sbjct: 136 YIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMH 195

Query: 200 VVTEKCDVYSFGVVALKVLMGTHP 223
              +  D++S G +  ++L G   
Sbjct: 196 -YNQTVDIWSVGCIMAELLTGRTL 218

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 30/216 (13%), Positives = 53/216 (24%), Gaps = 42/216 (19%)

Query: 44  ATEEFHIKYCIGTGGYGSVYKAE--LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST 101
           A +++     IG G YG V+KA      G+ VALK++   +T +     S   E  VL  
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRV-QTGEEGMPLSTIREVAVLRH 63

Query: 102 SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWA-- 159
                L    H   + +      S           F                        
Sbjct: 64  -----LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETI 118

Query: 160 ------------------------------LTDTLPQVNKIIGCISYYALWFYFQRHNLM 189
                                         +T +        G    Y+         + 
Sbjct: 119 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVT 178

Query: 190 PFHV--ELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
            ++   E+          D++S G +  ++      
Sbjct: 179 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL 214

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 36/230 (15%), Positives = 64/230 (27%), Gaps = 81/230 (35%)

Query: 46  EEFHIKYCIGTGGYGSVYKA-ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTS-- 102
           + +     IG+G  G V  A +    + VA+KKL +   ++    K    E  ++     
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR-PFQNQTHAKRAYRELVLMKCVNH 75

Query: 103 -------------------------------------------------VAHALSYLHHD 113
                                                            +   L  + H 
Sbjct: 76  KNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHL 135

Query: 114 CTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGC 173
            +  I+HRD+  +NI++ S+    + DFG AR         PY        P        
Sbjct: 136 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP-------- 187

Query: 174 ISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                               E+   M   E  D++S G +  +++     
Sbjct: 188 --------------------EVILGMGYKENVDIWSVGCIMGEMVRHKIL 217

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 28/130 (21%)

Query: 94  NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN 153
                 S  VA  + +L        +HRD+++ NILL       + DFG AR ++ D   
Sbjct: 134 EHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 190

Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
                       +       + + A                     V T + DV+SFGV+
Sbjct: 191 V-----------RKGDARLPLKWMA-PETIFDR-------------VYTIQSDVWSFGVL 225

Query: 214 ALKVLMGTHP 223
             ++      
Sbjct: 226 LWEIFSLGAS 235

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 46  EEFHIKYCIGTGGYGSVYKA------ELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
           +   +   +G G +G V +A      +    + VA+K L +  T      ++  +E  +L
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSE--HRALMSELKIL 70

Query: 100 STSVAHALSYLHHDC 114
                H         
Sbjct: 71  IHIGHHLNVVNLLGA 85

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-08
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 25/121 (20%)

Query: 103 VAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTD 162
                  + +  +   +HRD+++ N+L+  +    +ADFG AR +H     +        
Sbjct: 141 AYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN---- 196

Query: 163 TLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH 222
                      + + A    F R                T + DV+SFGV+  ++     
Sbjct: 197 -------GRLPVKWMAPEALFDRI--------------YTHQSDVWSFGVLLWEIFTLGG 235

Query: 223 P 223
            
Sbjct: 236 S 236

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 19/147 (12%), Positives = 32/147 (21%), Gaps = 53/147 (36%)

Query: 54  IGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFV-------KSFQNEAHVLSTSVAHA 106
           +G G   +V+           +K      T               F   A   + +   A
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 107 LSYLHHDCTL---------------------------------------------SIVHR 121
           L  L                                                    IVH 
Sbjct: 68  LQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHG 127

Query: 122 DISSNNILLDSNLEAFVADFGTARLLH 148
           D+S  N+L+      ++ DF  +  + 
Sbjct: 128 DLSQYNVLVS-EEGIWIIDFPQSVEVG 153

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 46  EEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL 99
           E+  +   +G G +G VY+              VA+K ++++ +        F NEA V+
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVM 77

Query: 100 STSVAHALSYLHHDCT 115
                H +  L    +
Sbjct: 78  KEFNCHHVVRLLGVVS 93

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 28/149 (18%)

Query: 75  LKKLHQSETEDSAFVKSFQNEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL 134
           L+ L  +   +        ++   ++  +A  ++YL+ +     VHRD+++ N ++  + 
Sbjct: 114 LRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDF 170

Query: 135 EAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVE 194
              + DFG  R ++            TD   +  K +  + + +               E
Sbjct: 171 TVKIGDFGMTRDIYE-----------TDYYRKGGKGLLPVRWMSP--------------E 205

Query: 195 LAYTMVVTEKCDVYSFGVVALKVLMGTHP 223
                V T   DV+SFGVV  ++      
Sbjct: 206 SLKDGVFTTYSDVWSFGVVLWEIATLAEQ 234

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 19/161 (11%), Positives = 51/161 (31%), Gaps = 5/161 (3%)

Query: 48  FHIKYCIGTGGYGSVYKAE-LPDGKVVALKKLHQSETEDSAFVKSFQNEAHVLSTSVAHA 106
           + +   +G G + +V+ A+ + +   VA+K +      D  + ++ ++E  +L       
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG----DKVYTEAAEDEIKLLQRVNDAD 70

Query: 107 LSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQ 166
            +         I+      N+   +      V +     LL +          L      
Sbjct: 71  NTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQI 130

Query: 167 VNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDV 207
             +++  + Y          ++ P +V +           +
Sbjct: 131 SKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI 171

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 28/130 (21%)

Query: 95  EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTARLLHVDSSN 153
               +S  +   L Y+H  C   I+H DI   N+L++       +     A L +    +
Sbjct: 126 YVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD 183

Query: 154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV 213
             Y              I    Y +                           D++S   +
Sbjct: 184 EHYTN-----------SIQTREYRSPEVLLGAP--------------WGCGADIWSTACL 218

Query: 214 ALKVLMGTHP 223
             +++ G   
Sbjct: 219 IFELITGDFL 228

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.98
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.98
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.98
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.98
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.98
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.98
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.98
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.98
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.98
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.97
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.97
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.97
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.97
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.97
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.97
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.97
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.97
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.96
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.96
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.96
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.77
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.79
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	96.32
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.07
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	94.7
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	94.29
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	89.72

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=250.10  Aligned_cols=151  Identities=32%  Similarity=0.492  Sum_probs=124.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+++.||+|++.+.........+.+.+|+.+                         
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            46899999999999999999966 4799999999875433332234556677666                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..||+.||.|||++   +|+||||||+||+++.++.++|+|||++....... 
T Consensus        85 mEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~-  160 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR-  160 (263)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC-
T ss_pred             EeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCCCc-
Confidence                                      344899999999999   99999999999999999999999999997654221 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                    .....||+.|+|              ||++.+..++.++||||+||++|||++|+.||++.
T Consensus       161 --------------~~~~~Gt~~Y~A--------------PE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         161 --------------RTTLCGTLDYLP--------------PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             --------------CEETTEEGGGCC--------------HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             --------------ccccCCCCcccC--------------HHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence                          123579999999              66666667899999999999999999999999864

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=251.50  Aligned_cols=155  Identities=27%  Similarity=0.468  Sum_probs=123.4

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.+.........+.+.+|++++.                       
T Consensus         7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            37899999999999999999966 579999999997543222222456777777643                       


Q ss_pred             ----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          101 ----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       101 ----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                  .|++.||.|||++   +|+||||||+||+++.++.++|+|||+++.......
T Consensus        87 mEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~  163 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  163 (288)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecccCCc
Confidence                                        3899999999999   999999999999999999999999999987643221


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...           ....+||+.|+|              ||++.+..++.++||||+||++|||++|+.||.+.
T Consensus       164 ~~~-----------~~~~~GT~~Y~A--------------PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         164 QAR-----------ANSFVGTAQYVS--------------PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             -----------------CCCCGGGCC--------------HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc-----------cccccCCccccC--------------ceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence            110           123579999999              66666667889999999999999999999999864

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=255.41  Aligned_cols=154  Identities=25%  Similarity=0.357  Sum_probs=126.8

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ..++|++.+.||+|+||+||+|.. .+|+.||||++.+.........+.+.+|+.++                       
T Consensus         3 ~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~i   82 (337)
T d1o6la_           3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF   82 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred             chHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecccccccc
Confidence            357899999999999999999965 57999999999764322222245566676663                       


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                  ..|++.||+|||++   +|+||||||+||+++.+|.++|+|||+++......
T Consensus        83 v~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~  159 (337)
T d1o6la_          83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             ceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccccCC
Confidence                                        34899999999999   99999999999999999999999999998654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             ....+||+.|+|              ||++.+..|+.++|+||+||++|||++|++||.+.
T Consensus       160 ~~-------------~~~~~GT~~Y~a--------------PE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~  208 (337)
T d1o6la_         160 AT-------------MKTFCGTPEYLA--------------PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CC-------------BCCCEECGGGCC--------------GGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cc-------------cccceeCHHHhh--------------hhhccCCCCChhhcccchhhHHHHHHHCCCCCCCc
Confidence            21             123679999999              77777778899999999999999999999999864

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=252.70  Aligned_cols=150  Identities=30%  Similarity=0.425  Sum_probs=124.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|++ .+|+.||||++.+.........+.+.+|+.++                        
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            46899999999999999999976 57999999999754332222345666776663                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 ..|++.|+.|||++   +|+||||||+||+++.++.++|+|||+++...... 
T Consensus        83 mE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~-  158 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT-  158 (316)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB-
T ss_pred             eeecCCccccccccccccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEecccc-
Confidence                                       34899999999999   99999999999999999999999999998654221 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     ...+||+.|+|              ||++.+..++.++||||+||++|+|++|+.||.+.
T Consensus       159 ---------------~~~~Gt~~Y~A--------------PE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  204 (316)
T d1fota_         159 ---------------YTLCGTPDYIA--------------PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  204 (316)
T ss_dssp             ---------------CCCCSCTTTCC--------------HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ---------------ccccCcccccC--------------HHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence                           23579999999              66666667899999999999999999999999864

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=247.42  Aligned_cols=151  Identities=26%  Similarity=0.434  Sum_probs=125.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.......   .+.+.+|+.++.                       
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~---~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   95 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChH---HHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEE
Confidence            45799999999999999999965 579999999987654333   345677777643                       


Q ss_pred             ---------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073          101 ---------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus       101 ---------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                                 .|++.||.|||++   +|+||||||+||+++.++.++|+|||++.........
T Consensus        96 mEy~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~  172 (293)
T d1yhwa1          96 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  172 (293)
T ss_dssp             EECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EEecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeecccccc
Confidence                                       3899999999999   9999999999999999999999999999876432211


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                   ....+||+.|+|              ||.+.+..++.++||||+||++|+|++|+.||.+.+
T Consensus       173 -------------~~~~~gt~~Y~a--------------PE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~  220 (293)
T d1yhwa1         173 -------------RSTMVGTPYWMA--------------PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN  220 (293)
T ss_dssp             -------------BCCCCSCGGGCC--------------HHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -------------ccccccCCCccC--------------hhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCC
Confidence                         123579999999              666666678999999999999999999999997643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=247.01  Aligned_cols=154  Identities=30%  Similarity=0.445  Sum_probs=120.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.......  ..+.+.+|+.++                        
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD--CPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch--HHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            57899999999999999999966 579999999987543222  234567777764                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 ..|++.||.|||++   +|+||||||+||+++.++.+||+|||++........
T Consensus        82 mEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~  158 (271)
T d1nvra_          82 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  158 (271)
T ss_dssp             EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             EeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccCCc
Confidence                                       34999999999999   999999999999999999999999999987643321


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..           .....+||+.|+||              |++.+..+ +.++||||+||++|||++|++||+...
T Consensus       159 ~~-----------~~~~~~GT~~Y~AP--------------E~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~  210 (271)
T d1nvra_         159 ER-----------LLNKMCGTLPYVAP--------------ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  210 (271)
T ss_dssp             EC-----------CBCCCCSCGGGSCT--------------HHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS
T ss_pred             cc-----------cccceeeCcCccCH--------------hHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC
Confidence            11           11335799999995              54544444 568999999999999999999997643

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-35  Score=255.37  Aligned_cols=150  Identities=22%  Similarity=0.328  Sum_probs=124.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.+.........+.+.+|+.+                         
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            46899999999999999999965 5799999999875433222234556677666                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                +..||+.||.|||++   +|+||||||+|||++.++.++|+|||+++...... 
T Consensus       120 ~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~-  195 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT-  195 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB-
T ss_pred             cccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeeccccc-
Confidence                                      344899999999999   99999999999999999999999999998654211 


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     ....||+.|+|              ||++.+..++.++||||+||++|||++|+.||.+.
T Consensus       196 ---------------~~~~Gt~~Y~A--------------PE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         196 ---------------WTLCGTPEALA--------------PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             ---------------CCCEECGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ---------------ccccCccccCC--------------HHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence                           22579999999              66666666899999999999999999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=246.17  Aligned_cols=161  Identities=30%  Similarity=0.482  Sum_probs=123.5

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      +|+...++|++.+.||+|+||+||+|+.+.  .||||+++....... ..+.+.+|+.++                    
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~   78 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQ-QLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL   78 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTT-HHHHHHHHHHHHTTCCCTTBCCEEEEECSSSC
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHH-HHHHHHHHHHHHHhCCCCCEeeeeEEEeccEE
Confidence            445567889999999999999999997643  599999976544333 357788888773                    


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     +.|++.||+|||++   +|+||||||+||+++.++.+||+|||++....
T Consensus        79 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~  155 (276)
T d1uwha_          79 AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS  155 (276)
T ss_dssp             EEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC--
T ss_pred             EEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeecc
Confidence                                           44899999999999   99999999999999999999999999997654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......           ......||+.|+|||++....           ...++.++|||||||++|||++|+.||.+.+
T Consensus       156 ~~~~~~-----------~~~~~~gt~~y~APE~l~~~~-----------~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~  213 (276)
T d1uwha_         156 RWSGSH-----------QFEQLSGSILWMAPEVIRMQD-----------KNPYSFQSDVYAFGIVLYELMTGQLPYSNIN  213 (276)
T ss_dssp             ---------------------CCCCGGGCCHHHHTTCS-----------SCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             ccCCcc-----------cccccccCcccCCHHHHhccc-----------CCCCCchhhhhhhHHHHHHHHHCCCCCCCCC
Confidence            322111           113357899999966543221           2236889999999999999999999998643

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.4e-35  Score=247.58  Aligned_cols=152  Identities=26%  Similarity=0.385  Sum_probs=125.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++...........+.+.+|+.++                        
T Consensus        14 ~~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   93 (309)
T d1u5ra_          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV   93 (309)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEE
Confidence            34699999999999999999965 57889999999876655555567788888773                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 +.||+.||.|||++   +|+||||||+||+++.++.++|+|||++......  
T Consensus        94 ~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~--  168 (309)
T d1u5ra_          94 MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA--  168 (309)
T ss_dssp             EECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred             EEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCCC--
Confidence                                       44899999999999   9999999999999999999999999998754321  


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                     ....||+.|+|||++.+.           ....|+.++|||||||++|||++|+.||.+.
T Consensus       169 ---------------~~~~GT~~Y~APE~~~~~-----------~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         169 ---------------NSFVGTPYWMAPEVILAM-----------DEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             ---------------CCCCSCGGGCCHHHHTTT-----------TSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ---------------CccccCccccCHHHHhcc-----------CCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence                           124699999996655322           1224688999999999999999999999764

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=242.87  Aligned_cols=155  Identities=28%  Similarity=0.470  Sum_probs=116.3

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++......+ ...+.+.+|+++                         
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~   81 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCH-HHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCH-HHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence            47899999999999999999965 579999999998765433 335667777766                         


Q ss_pred             --------------------------------HHHHHHHHHHHHhhCC--CCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 --------------------------------LSTSVAHALSYLHHDC--TLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 --------------------------------l~~~i~~~l~~LH~~~--~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                      +..|++.||.|||+.+  ..+|+||||||+||+++.++.++|+|||++
T Consensus        82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a  161 (269)
T d2java1          82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  161 (269)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHH
T ss_pred             EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccce
Confidence                                            3348999999999861  124999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +........             .....||+.|+|              ||++.+..++.++|||||||++|||++|+.||
T Consensus       162 ~~~~~~~~~-------------~~~~~gt~~Y~A--------------PE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf  214 (269)
T d2java1         162 RILNHDTSF-------------AKAFVGTPYYMS--------------PEQMNRMSYNEKSDIWSLGCLLYELCALMPPF  214 (269)
T ss_dssp             HHC------------------------CCCSCCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             eecccCCCc-------------cccCCCCcccCC--------------HHHHcCCCCChHHHHHhhCHHHHHHhhCCCCC
Confidence            876432211             123578999999              66666667899999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      .+.
T Consensus       215 ~~~  217 (269)
T d2java1         215 TAF  217 (269)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-35  Score=246.94  Aligned_cols=156  Identities=29%  Similarity=0.403  Sum_probs=126.1

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeC-CCCEEEEEEcCccccccHHHHHHHHHHHHHHH---------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELP-DGKVVALKKLHQSETEDSAFVKSFQNEAHVLS---------------  100 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------------  100 (257)
                      ++++|+...++|++.+.||+|+||+||+|.+. +++.||||+++.....    .+.+.+|+.+++               
T Consensus         8 ~~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~----~~~~~~E~~il~~l~HpnIv~~~~~~~   83 (287)
T d1opja_           8 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCT   83 (287)
T ss_dssp             TCCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSC----HHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CCcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccch----HHHHHHHHHHHHhCCCCCEecCCccEe
Confidence            45566677889999999999999999999664 6889999999765433    345777777643               


Q ss_pred             --------------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeecc
Q 039073          101 --------------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFG  142 (257)
Q Consensus       101 --------------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg  142 (257)
                                                            .|++.||.|||++   +|+||||||+||+++.++.+||+|||
T Consensus        84 ~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG  160 (287)
T d1opja_          84 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFG  160 (287)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             eCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEcccc
Confidence                                                  3899999999999   99999999999999999999999999


Q ss_pred             CccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCC
Q 039073          143 TARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTH  222 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~  222 (257)
                      +++.........            .....|+..|+|              ||.+.+..++.++|||||||++|||++|..
T Consensus       161 ~a~~~~~~~~~~------------~~~~~g~~~y~a--------------PE~~~~~~~~~k~DiwS~Gv~l~ell~~~~  214 (287)
T d1opja_         161 LSRLMTGDTYTA------------HAGAKFPIKWTA--------------PESLAYNKFSIKSDVWAFGVLLWEIATYGM  214 (287)
T ss_dssp             CTTTCCSSSSEE------------ETTEEECGGGCC--------------HHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred             ceeecCCCCcee------------eccccccccccC--------------hHHHcCCCCCchhhhhhHHHHHHHHHhCCC
Confidence            998654322110            122457889999              666666778999999999999999999666


Q ss_pred             CCc
Q 039073          223 PGE  225 (257)
Q Consensus       223 Pf~  225 (257)
                      ||.
T Consensus       215 p~~  217 (287)
T d1opja_         215 SPY  217 (287)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=242.30  Aligned_cols=155  Identities=25%  Similarity=0.390  Sum_probs=124.6

Q ss_pred             HHHHhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------
Q 039073           39 EDLINATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------   99 (257)
Q Consensus        39 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------   99 (257)
                      ++|..+.++|++.+.||+|+||.||+|.+++++.||||+++.....    .+.+.+|+.++                   
T Consensus         6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~----~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~   81 (272)
T d1qpca_           6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS----PDAFLAEANLMKQLQHQRLVRLYAVVTQEP   81 (272)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCC----HHHHHHHHHHHHhCCCCCEeEEEeeeccCC
Confidence            3455567899999999999999999999888889999999765433    24566777663                   


Q ss_pred             ---------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073          100 ---------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       100 ---------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                                                       +.||+.||.|||++   +|+||||||+||+++.++.+||+|||+++.
T Consensus        82 ~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          82 IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARL  158 (272)
T ss_dssp             CEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             eEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEE
Confidence                                             34899999999999   999999999999999999999999999987


Q ss_pred             cccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhC-CCCCc
Q 039073          147 LHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMG-THPGE  225 (257)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G-~~Pf~  225 (257)
                      ........            .....||+.|+|              ||.+.+..++.++|||||||++|||++| ++||.
T Consensus       159 ~~~~~~~~------------~~~~~gt~~y~A--------------PE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~  212 (272)
T d1qpca_         159 IEDNEYTA------------REGAKFPIKWTA--------------PEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (272)
T ss_dssp             CSSSCEEC------------CTTCCCCTTTSC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             ccCCcccc------------ccccCCcccccC--------------hHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            64332111            123467889999              5555556678899999999999999995 55555


Q ss_pred             c
Q 039073          226 L  226 (257)
Q Consensus       226 ~  226 (257)
                      .
T Consensus       213 ~  213 (272)
T d1qpca_         213 G  213 (272)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-35  Score=249.87  Aligned_cols=150  Identities=29%  Similarity=0.430  Sum_probs=123.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV------------------------   98 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------------------   98 (257)
                      ..++|++.+.||+|+||+||+|.. .+|+.||+|+++.....  ...+.+.+|+.+                        
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~i   81 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP--AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   81 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCT--THHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCH--HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            467899999999999999999965 57899999999764322  224566677665                        


Q ss_pred             ---------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073           99 ---------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                 +..|++.||.|||+ +   +|+||||||+||+++.++.++|+|||+|......
T Consensus        82 VmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  158 (322)
T d1s9ja_          82 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  158 (322)
T ss_dssp             EEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccCCC
Confidence                                       34489999999996 6   8999999999999999999999999999865432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..               ...+||+.|+|              ||++.+..|+.++||||+||++|||++|+.||.+.
T Consensus       159 ~~---------------~~~~GT~~Y~A--------------PEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         159 MA---------------NSFVGTRSYMS--------------PERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             TC------------------CCSSCCCC--------------HHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             cc---------------ccccCCccccC--------------chHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            11               23579999999              66677777899999999999999999999999753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.3e-34  Score=238.88  Aligned_cols=157  Identities=30%  Similarity=0.434  Sum_probs=123.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||+++..........+.+.+|++++.                       
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            47899999999999999999965 579999999998776666666778888888743                       


Q ss_pred             --------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          101 --------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       101 --------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                      .|++.||.|||++   +++||||||+||+++.++..+++|||.+....
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~  162 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIA  162 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEECC
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhhc
Confidence                                            3899999999999   99999999999999999999999999887653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .......          ......||+.|+|              ||.+.+..++.++||||+||++|||++|++||.+.+
T Consensus       163 ~~~~~~~----------~~~~~~Gt~~Y~a--------------PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~  218 (277)
T d1o6ya_         163 DSGNSVT----------QTAAVIGTAQYLS--------------PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS  218 (277)
T ss_dssp             --------------------------TTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccccccc----------ccccccCcccccC--------------HHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcC
Confidence            3221111          1234579999999              566666668899999999999999999999998643

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=243.90  Aligned_cols=157  Identities=25%  Similarity=0.378  Sum_probs=123.6

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      +.+.|++.+.||+|+||+||+|.+ .+++.||||++.......   .+.+.+|++++                       
T Consensus        10 p~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~---~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l   86 (288)
T d2jfla1          10 PEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE---LEDYMVEIDILASCDHPNIVKLLDAFYYENNLWI   86 (288)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGG---GGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHH---HHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEE
Confidence            456799999999999999999965 579999999987543221   34566666663                       


Q ss_pred             -----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073          100 -----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus       100 -----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                   ..|++.||.|||++   +|+||||||+||+++.++.+||+|||++......
T Consensus        87 vmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          87 LIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             EEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             EEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCC
Confidence                                         34899999999999   9999999999999999999999999998754321


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ..             ......||+.|+|||++...         ......++.++||||+||++|||++|+.||.+.+
T Consensus       164 ~~-------------~~~~~~Gt~~y~APE~l~~~---------~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~  219 (288)
T d2jfla1         164 IQ-------------RRDSFIGTPYWMAPEVVMCE---------TSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN  219 (288)
T ss_dssp             HH-------------HHTCCCSCCTTCCHHHHTTC---------STTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             cc-------------cccccccccccCCHHHHhhc---------ccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCC
Confidence            10             01235689999997766422         1134457899999999999999999999998643

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-34  Score=244.20  Aligned_cols=153  Identities=28%  Similarity=0.433  Sum_probs=122.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++++.........+.+..|..+                         
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            37899999999999999999965 4799999999975422111112333343333                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 ++.||+.||.|||++   +++||||||+||+++.++.++|+|||+++......
T Consensus        81 vmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~  157 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD  157 (320)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhccccc
Confidence                                       445899999999999   99999999999999999999999999998654322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....||+.|+|              ||.+.+..++.++||||+||++|||++|+.||.+.
T Consensus       158 ~~-------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~  206 (320)
T d1xjda_         158 AK-------------TNTFCGTPDYIA--------------PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  206 (320)
T ss_dssp             CC-------------BCCCCSCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cc-------------ccccCCCCCcCC--------------HHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence            11             123578999999              66677777899999999999999999999999864

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=232.59  Aligned_cols=151  Identities=24%  Similarity=0.385  Sum_probs=125.7

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .++|++.++||+|+||+||+|+.++++.||||+++......    +.+.+|+..                          
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~----~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~   78 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE----DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCH----HHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred             hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCH----HHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence            47899999999999999999998888899999998755443    456677766                          


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                ++.|+++|+.|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        79 Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~  155 (258)
T d1k2pa_          79 EYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY  155 (258)
T ss_dssp             ECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC
T ss_pred             EccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCc
Confidence                                      344899999999999   999999999999999999999999999976544322


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                      ..            .....||..|+|              ||.+....++.++|||||||++|||++ |+.||++.+
T Consensus       156 ~~------------~~~~~~t~~y~a--------------PE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~  206 (258)
T d1k2pa_         156 TS------------SVGSKFPVRWSP--------------PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT  206 (258)
T ss_dssp             CC------------CCCSCCCGGGCC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             ee------------ecccCCCCCcCC--------------cHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCC
Confidence            11            122467889999              666777778999999999999999998 899998653

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=235.10  Aligned_cols=149  Identities=27%  Similarity=0.405  Sum_probs=113.8

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------------   99 (257)
                      .++|++.+.||+|+||.||+|.+.+++.||||+++......    +.+.+|+.++                         
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~----~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~   79 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   79 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcH----HHHHHHHHHHHhcCCCCcccccceeccCCceEEEE
Confidence            46899999999999999999998888899999998654433    3566676663                         


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 +.|++.||.|||++   +++||||||+||+++.++.+||+|||+++.......
T Consensus        80 E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_          80 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             EecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCCc
Confidence                                       34899999999999   999999999999999999999999999986643322


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ..            .....||..|+|              ||.+.+..++.++|||||||++|||++ |++||..
T Consensus       157 ~~------------~~~~~gt~~y~a--------------PE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~  205 (263)
T d1sm2a_         157 TS------------STGTKFPVKWAS--------------PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN  205 (263)
T ss_dssp             --------------------CTTSCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS
T ss_pred             ee------------ecceecCcccCC--------------hHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCC
Confidence            11            122468899999              666666678999999999999999999 5767764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-33  Score=245.87  Aligned_cols=151  Identities=26%  Similarity=0.385  Sum_probs=117.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHH---HH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNE---AH-----------------------   97 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e---~~-----------------------   97 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.+...........+.+|   +.                       
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            57899999999999999999965 4799999999864322111111122222   22                       


Q ss_pred             ----------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073           98 ----------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus        98 ----------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                  .+..||+.||.|||++   +++||||||+|||++.++.++|+|||++.....
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~  159 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK  159 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEECSS
T ss_pred             EEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeecCC
Confidence                                        2445899999999999   999999999999999999999999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhh-cCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAY-TMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...               ....||+.|+||              |++. +..++.++||||+||++|||++|+.||.+.
T Consensus       160 ~~~---------------~~~~GT~~y~AP--------------E~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  209 (364)
T d1omwa3         160 KKP---------------HASVGTHGYMAP--------------EVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  209 (364)
T ss_dssp             SCC---------------CSCCSCGGGCCH--------------HHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             Ccc---------------cccccccccchh--------------HHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCC
Confidence            221               235699999995              5443 334789999999999999999999999753

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=239.74  Aligned_cols=152  Identities=28%  Similarity=0.508  Sum_probs=117.2

Q ss_pred             cccccceeeeecCceeEEEEEeC-CCC----EEEEEEcCccccccHHHHHHHHHHHHHHH--------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELP-DGK----VVALKKLHQSETEDSAFVKSFQNEAHVLS--------------------  100 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vaiK~~~~~~~~~~~~~~~~~~e~~~l~--------------------  100 (257)
                      ++|++.+.||+|+||+||+|.+. +|+    .||+|+++......  ..+.+.+|+.++.                    
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK--ANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----C--THHHHHHHHHHHHHCCCTTBCCEEEEEESSSEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEecCCee
Confidence            57999999999999999999653 454    58899887543222  2456778877743                    


Q ss_pred             -------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          101 -------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       101 -------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                     .||+.||.|||++   +|+||||||+||+++.++.+||+|||+++....
T Consensus        87 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence                                           3899999999999   999999999999999999999999999987654


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......           .....||..|+|              ||.+.+..++.++|||||||++|||++ |++||++.
T Consensus       164 ~~~~~~-----------~~~~~gt~~y~A--------------PE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~  217 (317)
T d1xkka_         164 EEKEYH-----------AEGGKVPIKWMA--------------LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  217 (317)
T ss_dssp             TCC-------------------CCTTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             cccccc-----------ccccccCccccC--------------hHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCC
Confidence            332111           122458999999              666666778999999999999999998 89999865

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-33  Score=240.90  Aligned_cols=150  Identities=29%  Similarity=0.414  Sum_probs=108.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++........  .+.+.+|+.++                        
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~--~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGK--EGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhH--HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46699999999999999999965 4799999999976543221  24456666663                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc---CCCCeEEeeccCcccccc
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLD---SNLEAFVADFGTARLLHV  149 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~---~~~~~~l~dfg~~~~~~~  149 (257)
                                                 ..|++.||.|||++   +++||||||+||++.   .++.++|+|||++.....
T Consensus        86 mE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~  162 (307)
T d1a06a_          86 MQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP  162 (307)
T ss_dssp             ECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC--------
T ss_pred             EeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEccC
Confidence                                       44899999999999   999999999999995   478899999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              ....+||+.|+|              ||++.+..++.++||||+||++|||++|+.||.+.
T Consensus       163 ~~~--------------~~~~~GT~~y~A--------------PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         163 GSV--------------LSTACGTPGYVA--------------PEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             ------------------------CTTSC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCe--------------eeeeeeCccccC--------------cHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            221              123579999999              66666677899999999999999999999999754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=236.61  Aligned_cols=161  Identities=24%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             CHHHHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH------------
Q 039073           37 SYEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV------------   98 (257)
Q Consensus        37 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~------------   98 (257)
                      ....|..+.++|++.+.||+|+||+||+|...      +++.||||+++......  ..+.+..|...            
T Consensus         4 ~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~--~~~~~~~e~~~l~~~~~h~~iv~   81 (299)
T d1ywna1           4 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS--EHRALMSELKILIHIGHHLNVVN   81 (299)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHH--HHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcH--HHHHHHHHHHHHHhhcCCCeEEE
Confidence            44566666789999999999999999999642      35689999997543221  12333333332            


Q ss_pred             ---------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEee
Q 039073           99 ---------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHR  121 (257)
Q Consensus        99 ---------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~  121 (257)
                                                                               ++.||+.||.|||++   +|+||
T Consensus        82 ~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHr  158 (299)
T d1ywna1          82 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  158 (299)
T ss_dssp             EEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCC
Confidence                                                                     344899999999999   99999


Q ss_pred             CCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC
Q 039073          122 DISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV  201 (257)
Q Consensus       122 dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~  201 (257)
                      ||||+||+++.++.+||+|||+++..........           .....||+.|+|              ||.+.+..+
T Consensus       159 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~-----------~~~~~gt~~y~A--------------PE~l~~~~~  213 (299)
T d1ywna1         159 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVR-----------KGDARLPLKWMA--------------PETIFDRVY  213 (299)
T ss_dssp             CCCGGGEEECGGGCEEECC------CCSCTTSCC-----------TTSCCCGGGGCC--------------HHHHHHCCC
T ss_pred             cCCccceeECCCCcEEEccCcchhhccccccccc-----------cCceeeCccccc--------------hhHhhcCCC
Confidence            9999999999999999999999986543322111           123568999999              666666778


Q ss_pred             CCccchhhHHHHHHHHHhC-CCCCccc
Q 039073          202 TEKCDVYSFGVVALKVLMG-THPGELL  227 (257)
Q Consensus       202 ~~~~DiwSlG~~l~ell~G-~~Pf~~~  227 (257)
                      +.++|||||||++|||++| .+||.+.
T Consensus       214 ~~~sDiwS~Gvil~ellt~~~~p~~~~  240 (299)
T d1ywna1         214 TIQSDVWSFGVLLWEIFSLGASPYPGV  240 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CcccceeehHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999986 6788754

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.3e-32  Score=230.88  Aligned_cols=159  Identities=25%  Similarity=0.304  Sum_probs=126.0

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc------HHHHHHHHHHHHHHH-----------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED------SAFVKSFQNEAHVLS-----------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~------~~~~~~~~~e~~~l~-----------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.......      ....+.+.+|+.+++                 
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            47899999999999999999965 579999999987653221      122345666776643                 


Q ss_pred             -----------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcc
Q 039073          101 -----------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTAR  145 (257)
Q Consensus       101 -----------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~  145 (257)
                                                         .||+.||.|||++   +++||||||+||+++.++.++|+|||++.
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~  158 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSC  158 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchhee
Confidence                                               3899999999999   99999999999999999999999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........              ....||..|+|||.+.+...        .....++.++||||+||++|+|++|+.||.
T Consensus       159 ~~~~~~~~--------------~~~~gt~~y~~PE~~~~~~~--------~~~~~~~~~~DiwslGvilyeml~g~~Pf~  216 (277)
T d1phka_         159 QLDPGEKL--------------REVCGTPSYLAPEIIECSMN--------DNHPGYGKEVDMWSTGVIMYTLLAGSPPFW  216 (277)
T ss_dssp             ECCTTCCB--------------CCCCSCGGGCCHHHHHHHHC--------TTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             EccCCCce--------------eeeeccCCCCCHHHhhcccc--------ccCCCCCchheEcccchhhhhhccCCCCCC
Confidence            76432211              22468999999888864421        223346889999999999999999999998


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +.+
T Consensus       217 ~~~  219 (277)
T d1phka_         217 HRK  219 (277)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            643

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=232.79  Aligned_cols=146  Identities=25%  Similarity=0.398  Sum_probs=117.4

Q ss_pred             cccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH---------------------------
Q 039073           48 FHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL---------------------------   99 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------------------------   99 (257)
                      |++.++||+|+||+||+|.+ .+++.||+|++....... ...+.+.+|++++                           
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK-SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH-HHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            47788999999999999965 478899999987654332 3356777888773                           


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCCC--eEeeCCCCCCeEEc-CCCCeEEeeccCccccc
Q 039073          100 ----------------------------STSVAHALSYLHHDCTLS--IVHRDISSNNILLD-SNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 ----------------------------~~~i~~~l~~LH~~~~~~--i~H~dLkp~nill~-~~~~~~l~dfg~~~~~~  148 (257)
                                                  ..||+.||+|||++   +  |+||||||+||+++ .++.+||+|||+++...
T Consensus        90 vmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~---~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHC---CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence                                        34899999999998   7  99999999999996 47899999999997543


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...               .....||+.|+|||              ++.+ .++.++||||+||++|||++|+.||.+.
T Consensus       167 ~~~---------------~~~~~GT~~Y~aPE--------------~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~  215 (270)
T d1t4ha_         167 ASF---------------AKAVIGTPEFMAPE--------------MYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  215 (270)
T ss_dssp             TTS---------------BEESCSSCCCCCGG--------------GGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CCc---------------cCCcccCccccCHH--------------HhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc
Confidence            211               12357999999955              4433 3789999999999999999999999754

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=238.49  Aligned_cols=153  Identities=25%  Similarity=0.341  Sum_probs=120.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||+++..... ....+.+.+|+++                         
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC-hHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            37899999999999999999965 57999999999754322 2224566777776                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCC
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~  151 (257)
                                                 +..|++.||.|||++   +|+||||||+||+++.++.++|+|||.++......
T Consensus        80 ~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~  156 (298)
T d1gz8a_          80 FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  156 (298)
T ss_dssp             EECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred             EeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCc
Confidence                                       344899999999999   99999999999999999999999999998664322


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ..             .....||+.|+|||++....             .++.++|+||+||++|+|++|+.||.+.
T Consensus       157 ~~-------------~~~~~gt~~y~apE~~~~~~-------------~~~~~~DiwSlGvily~m~~G~~Pf~~~  206 (298)
T d1gz8a_         157 RT-------------YTHEVVTLWYRAPEILLGCK-------------YYSTAVDIWSLGCIFAEMVTRRALFPGD  206 (298)
T ss_dssp             BC-------------TTCCBCCCTTCCHHHHTTCS-------------SCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cc-------------ceeecccceeeehhhhcccc-------------CCCccccccccchhhhHHhhCCCCCCCC
Confidence            21             12357899999965543322             2478999999999999999999999764

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=239.60  Aligned_cols=157  Identities=24%  Similarity=0.358  Sum_probs=119.3

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-CC-----CEEEEEEcCccccccHHHHHHHHHHHHH----------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-DG-----KVVALKKLHQSETEDSAFVKSFQNEAHV----------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~-----~~vaiK~~~~~~~~~~~~~~~~~~e~~~----------------   98 (257)
                      |..+.++|++.+.||+|+||+||+|... .+     ..||+|++.......  ....+.+|+.+                
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~~HpnIv~l~~~  109 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS--EREALMSELKMMTQLGSHENIVNLLGA  109 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHH--HHHHHHHHHHHHHHhcCCCcEeEEEEE
Confidence            3445688999999999999999999643 22     368999886532211  12233444333                


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHhhCCCCCeE
Q 039073           99 -----------------------------------------------------------LSTSVAHALSYLHHDCTLSIV  119 (257)
Q Consensus        99 -----------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~  119 (257)
                                                                                 ++.|++.||.|||++   +|+
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~Ii  186 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV  186 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence                                                                       344899999999999   999


Q ss_pred             eeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC
Q 039073          120 HRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM  199 (257)
Q Consensus       120 H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~  199 (257)
                      ||||||+||+++.++.+||+|||+++..........           .....||+.|+|              ||++.+.
T Consensus       187 HRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~-----------~~~~~gt~~y~a--------------PE~l~~~  241 (325)
T d1rjba_         187 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVV-----------RGNARLPVKWMA--------------PESLFEG  241 (325)
T ss_dssp             ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEE-----------ETTEEECGGGCC--------------HHHHHHC
T ss_pred             eccCchhccccccCCeEEEeeccccccccCCCceee-----------eccccCCCccCC--------------hHHHcCC
Confidence            999999999999999999999999987654332110           123567999999              6666677


Q ss_pred             CCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          200 VVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       200 ~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .++.++|||||||++|||++ |+.||.+.
T Consensus       242 ~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         242 IYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             CCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            78999999999999999998 99999865

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.4e-33  Score=236.31  Aligned_cols=153  Identities=25%  Similarity=0.377  Sum_probs=120.4

Q ss_pred             ccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      .++|++.+.||+|+||.||+|.+++|+.||||+++..... ....+.+.+|+.+                          
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC-hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence            3789999999999999999998889999999999765432 2224566677665                          


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCC
Q 039073           99 -------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSN  153 (257)
Q Consensus        99 -------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~  153 (257)
                                               ++.||+.||+|||++   +|+||||||+||+++.++.++++|||.+.........
T Consensus        80 e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~  156 (286)
T d1ob3a_          80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK  156 (286)
T ss_dssp             ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             EeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCccc
Confidence                                     445899999999999   9999999999999999999999999998876433221


Q ss_pred             CCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          154 RPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                                   .....|++.|+|||.+...             ..++.++|+||+||++|||++|+.||.+.
T Consensus       157 -------------~~~~~~~~~y~~pE~~~~~-------------~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         157 -------------YTHEIVTLWYRAPDVLMGS-------------KKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             ------------------CCCTTCCHHHHTTC-------------CSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             -------------cceecccchhhhHHHHhCC-------------CCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence                         1224578899995444322             23588999999999999999999999754

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-33  Score=234.84  Aligned_cols=151  Identities=29%  Similarity=0.403  Sum_probs=117.3

Q ss_pred             hhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHHH-----------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHVL-----------------------   99 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-----------------------   99 (257)
                      ...++|++.+.||+|+||+||+|...+++.||||+++......    +.+.+|+.++                       
T Consensus        14 i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~----~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv   89 (285)
T d1fmka3          14 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP----EAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIV   89 (285)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEE
T ss_pred             cCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCH----HHHHHHHHHHHhcccCCEeEEEEEEecCCeEEE
Confidence            4457899999999999999999988887889999997654432    4566676663                       


Q ss_pred             -----------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccC
Q 039073          100 -----------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVD  150 (257)
Q Consensus       100 -----------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~  150 (257)
                                                   +.||+.|++|||++   +++||||||+||++|.++.++|+|||+++.....
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~  166 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN  166 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCC
Confidence                                         44899999999999   9999999999999999999999999999865432


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC-CCCcc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT-HPGEL  226 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~-~Pf~~  226 (257)
                      ....            .....||+.|+|              ||.+....++.++|||||||++|||++|. +|+..
T Consensus       167 ~~~~------------~~~~~gt~~y~a--------------PE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~  217 (285)
T d1fmka3         167 EYTA------------RQGAKFPIKWTA--------------PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG  217 (285)
T ss_dssp             ---------------------CCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             Ccee------------eccccccccccC--------------hHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCC
Confidence            2111            122468899999              66677777889999999999999999954 44553

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-33  Score=235.09  Aligned_cols=157  Identities=32%  Similarity=0.463  Sum_probs=112.0

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCC---EEEEEEcCccccccHHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGK---VVALKKLHQSETEDSAFVKSFQNEAHVL---------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~---~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+. +++   .||||++.....  ....+.+.+|+.++                     
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~  102 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT--EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPV  102 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC--HHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            467888999999999999999764 333   588998875432  33456788888773                     


Q ss_pred             -------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          100 -------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       100 -------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                     +.||+.||.|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus       103 ~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  179 (299)
T d1jpaa_         103 MIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  179 (299)
T ss_dssp             EEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcccceEcc
Confidence                                           34899999999999   99999999999999999999999999998765


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ........        .......||+.|+|              ||...+..++.++|||||||++|||++ |+.||.+.
T Consensus       180 ~~~~~~~~--------~~~~~~~~t~~y~a--------------PE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~  237 (299)
T d1jpaa_         180 DDTSDPTY--------TSALGGKIPIRWTA--------------PEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  237 (299)
T ss_dssp             ------------------------CGGGSC--------------HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCCCccee--------eecccccCCccccC--------------HHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC
Confidence            43221111        00112357889999              666666778999999999999999998 89999864


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       238 ~  238 (299)
T d1jpaa_         238 T  238 (299)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.2e-33  Score=232.49  Aligned_cols=152  Identities=31%  Similarity=0.385  Sum_probs=112.2

Q ss_pred             ccccccceeeeecCceeEEEEEeCC-C----CEEEEEEcCccccccHHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELPD-G----KVVALKKLHQSETEDSAFVKSFQNEAHVL--------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~~-~----~~vaiK~~~~~~~~~~~~~~~~~~e~~~l--------------------   99 (257)
                      .+.|+..+.||+|+||.||+|.... +    ..||||++.....  ......+.+|+.++                    
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~   83 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT--EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP   83 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC--hHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCc
Confidence            4678999999999999999996542 2    3799999975433  23345677888773                    


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      +.|++.|+.|||++   +|+||||||+||+++.++.+||+|||+++..
T Consensus        84 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          84 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             eEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcc
Confidence                                            33899999999999   9999999999999999999999999999876


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........          ......||..|+|              ||.+.+..++.++|||||||++|||++|..|+.
T Consensus       161 ~~~~~~~~----------~~~~~~gt~~Y~A--------------PE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~  214 (283)
T d1mqba_         161 EDDPEATY----------TTSGGKIPIRWTA--------------PEAISYRKFTSASDVWSFGIVMWEVMTYGERPY  214 (283)
T ss_dssp             -----------------------CCCGGGSC--------------HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             cCCCccce----------EeccCCCCccccC--------------HHHHccCCCCCcccccccHHHHHHHHhCCCCcc
Confidence            43321110          0123457899999              666666778999999999999999999655443

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.98  E-value=5.3e-33  Score=240.49  Aligned_cols=149  Identities=26%  Similarity=0.352  Sum_probs=122.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.....   ...+.+.+|+.++.                       
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch---hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46899999999999999999965 5799999999976432   22456777777643                       


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC--CCCeEEeeccCcccccc
Q 039073          101 -----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDS--NLEAFVADFGTARLLHV  149 (257)
Q Consensus       101 -----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~--~~~~~l~dfg~~~~~~~  149 (257)
                                                   .||+.||.|||++   +++||||||+||+++.  ++.++|+|||++.....
T Consensus       102 mE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~  178 (350)
T d1koaa2         102 YEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  178 (350)
T ss_dssp             ECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCT
T ss_pred             EEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheeccc
Confidence                                         3899999999999   9999999999999964  57899999999986543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              .....||+.|+|              ||++.+..++.++||||+||++|+|++|+.||.+.
T Consensus       179 ~~~--------------~~~~~gT~~Y~a--------------PEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         179 KQS--------------VKVTTGTAEFAA--------------PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             TSC--------------EEEECSCTTTCC--------------HHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc--------------cceecCcccccC--------------HHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence            221              123578999999              66666666788999999999999999999999864

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6e-33  Score=235.30  Aligned_cols=150  Identities=25%  Similarity=0.340  Sum_probs=113.9

Q ss_pred             cceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc--HHHHHHHHHHHHHHH--------------------------
Q 039073           50 IKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED--SAFVKSFQNEAHVLS--------------------------  100 (257)
Q Consensus        50 ~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~--------------------------  100 (257)
                      .++.||+|+||+||+|.+ .+|+.||||+++......  ....+.+.+|+.++.                          
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            467899999999999976 479999999997653322  122345667777643                          


Q ss_pred             -------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCC
Q 039073          101 -------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRP  155 (257)
Q Consensus       101 -------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~  155 (257)
                                               .||+.||.|||++   +++||||||+||+++.++.+||+|||++.........  
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~--  156 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA--  156 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC--
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCccc--
Confidence                                     3899999999999   9999999999999999999999999999765433221  


Q ss_pred             ccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          156 YEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       156 ~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                                 ....+||+.|+|||++..             ...++.++||||+||++|||++|++||.+.+
T Consensus       157 -----------~~~~~gt~~y~aPE~~~~-------------~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  205 (299)
T d1ua2a_         157 -----------YTHQVVTRWYRAPELLFG-------------ARMYGVGVDMWAVGCILAELLLRVPFLPGDS  205 (299)
T ss_dssp             -----------CCCSCCCCTTCCHHHHTT-------------CSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -----------ccceecChhhccHHHHcc-------------CCCCChhhhhhhcchHHHHHHhCcCCCCCCC
Confidence                       123468999999554432             2235889999999999999999999997643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.98  E-value=5.6e-33  Score=240.54  Aligned_cols=150  Identities=24%  Similarity=0.310  Sum_probs=123.2

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++......   ..+.+.+|+.+                         
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46799999999999999999965 57999999998754322   23456677766                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc--CCCCeEEeeccCcccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD--SNLEAFVADFGTARLLHV  149 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~--~~~~~~l~dfg~~~~~~~  149 (257)
                                                 +..||+.||.|||++   +|+||||||+|||++  .++.++|+|||++.....
T Consensus       105 mE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~  181 (352)
T d1koba_         105 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  181 (352)
T ss_dssp             EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             EEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecCC
Confidence                                       344899999999999   999999999999998  568899999999987643


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ...              .....||+.|+|              ||.+.+..++.++||||+||++|+|++|+.||.+.+
T Consensus       182 ~~~--------------~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~  232 (352)
T d1koba_         182 DEI--------------VKVTTATAEFAA--------------PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED  232 (352)
T ss_dssp             TSC--------------EEEECSSGGGCC--------------HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             CCc--------------eeeccCcccccC--------------HHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence            221              123568999999              666666778999999999999999999999998643

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=5.2e-33  Score=235.96  Aligned_cols=160  Identities=26%  Similarity=0.384  Sum_probs=125.9

Q ss_pred             HHHHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHHH------------
Q 039073           38 YEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------   99 (257)
Q Consensus        38 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------   99 (257)
                      +.++..+.++|++.+.||+|+||+||+|+..      +++.||||+++....  ....+.+.+|+.++            
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~E~~il~~l~h~niv~~~   82 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDNPNIVKLL   82 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC--hHHHHHHHHHHHHHHhcCCCCcccce
Confidence            3455667889999999999999999999643      457899999975432  33356677777763            


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHHHhhCCCC
Q 039073          100 ---------------------------------------------------------------STSVAHALSYLHHDCTL  116 (257)
Q Consensus       100 ---------------------------------------------------------------~~~i~~~l~~LH~~~~~  116 (257)
                                                                                     +.|++.|++|||++   
T Consensus        83 ~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---  159 (301)
T d1lufa_          83 GVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---  159 (301)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             eeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---
Confidence                                                                           33899999999999   


Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhh
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELA  196 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~  196 (257)
                      +++||||||+||++|.++.+||+|||+++..........           .....|++.|+|              ||..
T Consensus       160 ~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~~  214 (301)
T d1lufa_         160 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA-----------DGNDAIPIRWMP--------------PESI  214 (301)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC---------------CCBCGGGCC--------------HHHH
T ss_pred             CeEeeEEcccceEECCCCcEEEccchhheeccCCccccc-----------cCCCCcCcCcCC--------------HHHH
Confidence            999999999999999999999999999986543321111           123457889999              6666


Q ss_pred             hcCCCCCccchhhHHHHHHHHHhCC-CCCccc
Q 039073          197 YTMVVTEKCDVYSFGVVALKVLMGT-HPGELL  227 (257)
Q Consensus       197 ~~~~~~~~~DiwSlG~~l~ell~G~-~Pf~~~  227 (257)
                      .+..++.++|||||||++|||++|. +||.+.
T Consensus       215 ~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~  246 (301)
T d1lufa_         215 FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  246 (301)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             ccCCCChhhhhccchhhHHHHHccCCCCCCCC
Confidence            7777899999999999999999974 678764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-32  Score=232.74  Aligned_cols=153  Identities=22%  Similarity=0.325  Sum_probs=122.7

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCcccccc---HHHHHHHHHHHHHHH--------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETED---SAFVKSFQNEAHVLS--------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~---~~~~~~~~~e~~~l~--------------------  100 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++.+.....   ....+.+.+|+.++.                    
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            46799999999999999999965 579999999986543221   112456777777643                    


Q ss_pred             -------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC----CeEEeeccCcc
Q 039073          101 -------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL----EAFVADFGTAR  145 (257)
Q Consensus       101 -------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~----~~~l~dfg~~~  145 (257)
                                                     .|++.||.|||++   +++||||||+||+++.++    .++++|||++.
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhhh
Confidence                                           3899999999999   999999999999998776    48999999998


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCc
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ........              ....||+.|+|              ||.+.+..++.++||||+||++|||++|+.||.
T Consensus       166 ~~~~~~~~--------------~~~~~t~~y~A--------------PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~  217 (293)
T d1jksa_         166 KIDFGNEF--------------KNIFGTPEFVA--------------PEIVNYEPLGLEADMWSIGVITYILLSGASPFL  217 (293)
T ss_dssp             ECTTSCBC--------------SCCCCCGGGCC--------------HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             hcCCCccc--------------cccCCCCcccC--------------HHHHcCCCCCCcccchhhhHHHHHHHcCCCCCC
Confidence            76433211              22468899999              566666667999999999999999999999998


Q ss_pred             ccc
Q 039073          226 LLS  228 (257)
Q Consensus       226 ~~~  228 (257)
                      +.+
T Consensus       218 ~~~  220 (293)
T d1jksa_         218 GDT  220 (293)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            643

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-32  Score=231.98  Aligned_cols=156  Identities=27%  Similarity=0.406  Sum_probs=123.4

Q ss_pred             hcccccccee-eeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHHHHH------------------
Q 039073           44 ATEEFHIKYC-IGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHVLST------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~-lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~------------------  101 (257)
                      ..++|.+.+. ||+|+||+||+|...   ++..||||+++...  .....+.+.+|++++..                  
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~   83 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEAL   83 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSE
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc--CHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeE
Confidence            3467888874 999999999999543   35579999997643  23346778888887543                  


Q ss_pred             ---------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 ---------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ---------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                       |++.||+|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus        84 ~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~  160 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG  160 (285)
T ss_dssp             EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred             EEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhccc
Confidence                                             899999999999   99999999999999999999999999998764


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      .......          ......||+.|+|              ||.+.+..++.++|||||||++|||++ |+.||.+.
T Consensus       161 ~~~~~~~----------~~~~~~gt~~y~a--------------PE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~  216 (285)
T d1u59a_         161 ADDSYYT----------ARSAGKWPLKWYA--------------PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  216 (285)
T ss_dssp             TCSCEEC----------CCCSSCCCGGGCC--------------HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccccc----------cccccccCccccC--------------hHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC
Confidence            3321110          0123468899999              555666667899999999999999998 99999865


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       217 ~  217 (285)
T d1u59a_         217 K  217 (285)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.7e-33  Score=233.75  Aligned_cols=156  Identities=24%  Similarity=0.391  Sum_probs=113.9

Q ss_pred             ccccccceeeeecCceeEEEEEe--CCC--CEEEEEEcCccccccHHHHHHHHHHHHHHHH-------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL--PDG--KVVALKKLHQSETEDSAFVKSFQNEAHVLST-------------------  101 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~--~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-------------------  101 (257)
                      .++|++.+.||+|+||+||+|..  .++  ..||||++++.........+.+.+|+.+++.                   
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~   86 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK   86 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchh
Confidence            47799999999999999999954  233  3689999987665555556788888887544                   


Q ss_pred             --------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          102 --------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       102 --------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                      |++.|+.|||++   +++||||||+||+++.++.++|+|||+++....
T Consensus        87 lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~  163 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  163 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             eeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhccc
Confidence                                            899999999999   999999999999999999999999999987644


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ......          ......|+..|+|              ||.+.+..++.++||||||+++|||++ |+.||.+.
T Consensus       164 ~~~~~~----------~~~~~~~~~~~~a--------------PE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~  218 (273)
T d1u46a_         164 NDDHYV----------MQEHRKVPFAWCA--------------PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  218 (273)
T ss_dssp             -CCEEE----------C-----CCGGGCC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCCcce----------ecCccccCcccCC--------------HHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence            322110          0122456778999              555566667889999999999999998 89999864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.8e-33  Score=235.85  Aligned_cols=153  Identities=27%  Similarity=0.396  Sum_probs=118.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CC-CCEEEEEEcCccccccHHHHHHHHHHHH------------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PD-GKVVALKKLHQSETEDSAFVKSFQNEAH------------------------   97 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~-~~~vaiK~~~~~~~~~~~~~~~~~~e~~------------------------   97 (257)
                      ..++|++.+.||+|+||+||+|.+ .+ ++.||||+++........ ...+.+|+.                        
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGM-PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSC-BCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchH-HHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            357999999999999999999975 44 567999998643221100 011112222                        


Q ss_pred             ------------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeec
Q 039073           98 ------------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADF  141 (257)
Q Consensus        98 ------------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~df  141 (257)
                                                          .+..|++.||+|||++   +|+||||||+|||++.++.++|+||
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~df  160 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADF  160 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSC
T ss_pred             cccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecch
Confidence                                                2455899999999999   9999999999999999999999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |++........              .....||+.|+|              ||++.+..++.++||||+||++|||++|+
T Consensus       161 g~~~~~~~~~~--------------~~~~~gT~~Y~A--------------PE~~~~~~y~~~~DiwSlG~il~ell~g~  212 (305)
T d1blxa_         161 GLARIYSFQMA--------------LTSVVVTLWYRA--------------PEVLLQSSYATPVDLWSVGCIFAEMFRRK  212 (305)
T ss_dssp             CSCCCCCGGGG--------------GCCCCCCCTTCC--------------HHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             hhhhhhccccc--------------CCCcccChhhcC--------------cchhcCCCCChhehhhchHHHHHHHHHCC
Confidence            99875432221              133578999999              66666777899999999999999999999


Q ss_pred             CCCcccc
Q 039073          222 HPGELLS  228 (257)
Q Consensus       222 ~Pf~~~~  228 (257)
                      +||.+.+
T Consensus       213 ~pf~~~~  219 (305)
T d1blxa_         213 PLFRGSS  219 (305)
T ss_dssp             CSCCCSS
T ss_pred             CCCCCCC
Confidence            9998643

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-32  Score=230.06  Aligned_cols=155  Identities=28%  Similarity=0.410  Sum_probs=114.4

Q ss_pred             hhccccccceeeeecCceeEEEEEeC----CCCEEEEEEcCccccccHHHHHHHHHHHHHH-------------------
Q 039073           43 NATEEFHIKYCIGTGGYGSVYKAELP----DGKVVALKKLHQSETEDSAFVKSFQNEAHVL-------------------   99 (257)
Q Consensus        43 ~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-------------------   99 (257)
                      .+.++|++.+.||+|+||+||+|.+.    .+..||||+++...  .....+.+.+|+.++                   
T Consensus         4 i~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~   81 (273)
T d1mp8a_           4 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVITENP   81 (273)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             cCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCe
Confidence            45678999999999999999999653    24568999986543  233356677787763                   


Q ss_pred             --------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          100 --------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       100 --------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                      +.|++.|+.|||++   +++||||||+||+++.++.+||+|||+++..
T Consensus        82 ~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          82 VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheec
Confidence                                            34899999999999   9999999999999999999999999999865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      .......            .....||+.|+|              ||.+.+..++.++|||||||++|||++ |.+||.+
T Consensus       159 ~~~~~~~------------~~~~~gt~~y~a--------------pE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~  212 (273)
T d1mp8a_         159 EDSTYYK------------ASKGKLPIKWMA--------------PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG  212 (273)
T ss_dssp             ------------------------CCGGGCC--------------HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             cCCccee------------ccceecCcccch--------------hhHhccCCCCCccccccchHHHHHHHhcCCCCCCC
Confidence            4322211            123457889999              666667778899999999999999998 9999986


Q ss_pred             cc
Q 039073          227 LS  228 (257)
Q Consensus       227 ~~  228 (257)
                      .+
T Consensus       213 ~~  214 (273)
T d1mp8a_         213 VK  214 (273)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-32  Score=233.48  Aligned_cols=157  Identities=23%  Similarity=0.336  Sum_probs=122.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~---------------------  101 (257)
                      ..++|++.+.||+|+||+||+|.. .+|+.||||++....  .....+.+.+|+.++..                     
T Consensus         6 i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~   83 (345)
T d1pmea_           6 VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM   83 (345)
T ss_dssp             CCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred             cCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeecccccc
Confidence            456899999999999999999954 689999999997643  33445677788877443                     


Q ss_pred             ---------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          102 ---------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       102 ---------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                                                       |++.||.|||++   +|+||||||+|||++.++.++|+|||++....
T Consensus        84 ~~~~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~  160 (345)
T d1pmea_          84 KDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD  160 (345)
T ss_dssp             CCEEEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ceEEEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeecc
Confidence                                             899999999999   99999999999999999999999999998654


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      .......          .....+||+.|+|||++.             ....++.++||||+||++|+|++|+.||.+.+
T Consensus       161 ~~~~~~~----------~~~~~~gt~~y~aPE~l~-------------~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~  217 (345)
T d1pmea_         161 PDHDHTG----------FLTEYVATRWYRAPEIML-------------NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  217 (345)
T ss_dssp             GGGCBCC----------TTCCCCSCGGGCCGGGTT-------------TBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CCCccce----------eeccccccceechHHHhh-------------cCCCCCchhhhhccCceehHHhhCCCCCCCCC
Confidence            3322111          113356899999954432             23345789999999999999999999998643

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=228.53  Aligned_cols=149  Identities=28%  Similarity=0.428  Sum_probs=114.2

Q ss_pred             eeeeecCceeEEEEEeC---CCCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------------
Q 039073           52 YCIGTGGYGSVYKAELP---DGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------------  100 (257)
Q Consensus        52 ~~lg~G~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------------  100 (257)
                      ++||+|+||+||+|...   +++.||||+++..... ....+.+.+|+.++.                            
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND-PALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCC-HHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCC
Confidence            57999999999999643   3568999999765433 334567888888743                            


Q ss_pred             ----------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCCCCCccc
Q 039073          101 ----------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEW  158 (257)
Q Consensus       101 ----------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (257)
                                            .||+.||.|||++   +++||||||+||+++.++.++++|||+++..........   
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~---  165 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK---  165 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEE---
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhccccccccc---
Confidence                                  3899999999999   999999999999999999999999999986543221110   


Q ss_pred             cccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcccc
Q 039073          159 ALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGELLS  228 (257)
Q Consensus       159 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~~~  228 (257)
                             ......||+.|+|              ||.+.+..++.++|||||||++|||++ |+.||.+.+
T Consensus       166 -------~~~~~~gt~~y~A--------------PE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         166 -------AQTHGKWPVKWYA--------------PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             -------C----CCCGGGCC--------------HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             -------cccccCCCceecC--------------chhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence                   0123468899999              555555667889999999999999998 999998643

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-32  Score=230.62  Aligned_cols=157  Identities=22%  Similarity=0.351  Sum_probs=118.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++........ ....+.+|+.++                        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~-~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG-FPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTS-SCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchH-HHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            58999999999999999999965 5799999999865433221 233455566553                        


Q ss_pred             -----------------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073          100 -----------------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus       100 -----------------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                         ..|++.|+.|||++   +|+||||||+||+++.++.++++|||++
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~  164 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLA  164 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             cCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeeccee
Confidence                                               34899999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ...........         ......+||+.|+|||++...             ..++.++||||+||++|||++|+.||
T Consensus       165 ~~~~~~~~~~~---------~~~~~~~gT~~Y~aPE~~~~~-------------~~~~~k~DiwSlGvil~el~~g~~pf  222 (318)
T d3blha1         165 RAFSLAKNSQP---------NRYTNRVVTLWYRPPELLLGE-------------RDYGPPIDLWGAGCIMAEMWTRSPIM  222 (318)
T ss_dssp             EECCC-----C---------CCCCSCCSCGGGCCHHHHTTC-------------SSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             eeccccccccc---------ccccceecCHHHhhHHHHcCC-------------CCCCcHHHcccCCceeeeHhhCCCCC
Confidence            76543221110         011235689999995554322             23688999999999999999999999


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      ++.
T Consensus       223 ~~~  225 (318)
T d3blha1         223 QGN  225 (318)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            853

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-33  Score=231.39  Aligned_cols=152  Identities=26%  Similarity=0.340  Sum_probs=114.8

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccH---HHHHHHHH--------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDS---AFVKSFQN--------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~---~~~~~~~~--------------------------   94 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++........   ...+.+.+                          
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            46799999999999999999965 5799999999864321100   00000111                          


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC-CCeEEeeccCcc
Q 039073           95 ----------------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN-LEAFVADFGTAR  145 (257)
Q Consensus        95 ----------------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~-~~~~l~dfg~~~  145 (257)
                                                  ++..+..|++.||.|||++   +++||||||+||+++.+ +.++|+|||++.
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECccccce
Confidence                                        2333566999999999999   99999999999999854 789999999997


Q ss_pred             ccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCC-CCccchhhHHHHHHHHHhCCCCC
Q 039073          146 LLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVV-TEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~-~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      ......               .....||+.|+|||++              .+..+ +.++||||+||++|||++|+.||
T Consensus       160 ~~~~~~---------------~~~~~GT~~y~aPE~~--------------~~~~~~~~~~DiwSlGvilyell~g~~Pf  210 (273)
T d1xwsa_         160 LLKDTV---------------YTDFDGTRVYSPPEWI--------------RYHRYHGRSAAVWSLGILLYDMVCGDIPF  210 (273)
T ss_dssp             ECCSSC---------------BCCCCSCGGGSCHHHH--------------HHSCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             eccccc---------------ccccccCCCcCCHHHH--------------cCCCCCCcccccccceeeehhHhhCCCCC
Confidence            653221               1235699999995554              43333 56789999999999999999999


Q ss_pred             cccc
Q 039073          225 ELLS  228 (257)
Q Consensus       225 ~~~~  228 (257)
                      .+.+
T Consensus       211 ~~~~  214 (273)
T d1xwsa_         211 EHDE  214 (273)
T ss_dssp             CSHH
T ss_pred             CCch
Confidence            8654

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=9.9e-32  Score=227.68  Aligned_cols=156  Identities=20%  Similarity=0.399  Sum_probs=120.9

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++.......     .+..|+++                         
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~-----~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~i   80 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP-----QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   80 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSC-----CHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEE
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCH-----HHHHHHHHHHHccCCCcccEEEEEEecCCEEEE
Confidence            35799999999999999999965 578999999876543222     23334443                         


Q ss_pred             ---------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEc---CCCCeEEeeccCccccc
Q 039073           99 ---------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLD---SNLEAFVADFGTARLLH  148 (257)
Q Consensus        99 ---------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~---~~~~~~l~dfg~~~~~~  148 (257)
                                                 ++.|++.||+|||++   +|+||||||+||+++   .+..++++|||+++...
T Consensus        81 vme~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~  157 (299)
T d1ckia_          81 VMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  157 (299)
T ss_dssp             EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECB
T ss_pred             EEEEcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceecc
Confidence                                       445899999999999   999999999999875   34579999999998765


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ........      .........||+.|+|              ||...+..++.++|||||||++|||++|+.||....
T Consensus       158 ~~~~~~~~------~~~~~~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~  217 (299)
T d1ckia_         158 DARTHQHI------PYRENKNLTGTARYAS--------------INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  217 (299)
T ss_dssp             CTTTCCBC------CCCBCCSCCCCSSSCC--------------HHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             ccccccce------eccccCCcCCCccccC--------------HHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccc
Confidence            43322111      1111234579999999              666777778999999999999999999999998654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=1.9e-31  Score=225.48  Aligned_cols=160  Identities=18%  Similarity=0.326  Sum_probs=120.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHH-----------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQN-----------------------------   94 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~-----------------------------   94 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++....... ....++..                             
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~-~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP-QLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSC-CHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcH-HHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            46899999999999999999965 478999999885433221 11112111                             


Q ss_pred             -------------------HHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC-----CCCeEEeeccCccccccC
Q 039073           95 -------------------EAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS-----NLEAFVADFGTARLLHVD  150 (257)
Q Consensus        95 -------------------e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~-----~~~~~l~dfg~~~~~~~~  150 (257)
                                         ++..++.|++.||.|||++   +++||||||+||+++.     ++.++|+|||+++.....
T Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~  159 (293)
T d1csna_          83 LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  159 (293)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             cCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEcccC
Confidence                               1111455899999999999   9999999999999974     567999999999876543


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ......      .........||+.|+|              ||.+.+..++.++||||+||++|||++|+.||.+..
T Consensus       160 ~~~~~~------~~~~~~~~~GT~~y~a--------------PE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~  217 (293)
T d1csna_         160 VTKQHI------PYREKKNLSGTARYMS--------------INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  217 (293)
T ss_dssp             TTCCBC------CCCCCCCCCSCTTTCC--------------HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             ccccce------eecccCceEEchhhcC--------------HHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCcc
Confidence            322111      1111234679999999              666666678999999999999999999999998643

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=229.47  Aligned_cols=150  Identities=26%  Similarity=0.376  Sum_probs=121.1

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ..++|++.+.||+|+||+||+|.+ .+|+.||||+++.....    ...+.+|+.++.                      
T Consensus         3 ~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~----~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~l   78 (321)
T d1tkia_           3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD----QVLVKKEISILNIARHRNILHLHESFESMEELVM   78 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH----HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE
T ss_pred             CccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc----HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence            468899999999999999999965 47889999999764332    234566766643                      


Q ss_pred             ------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC--CCeEEeeccCccccc
Q 039073          101 ------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSN--LEAFVADFGTARLLH  148 (257)
Q Consensus       101 ------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~--~~~~l~dfg~~~~~~  148 (257)
                                                    .||+.|+.|||++   +|+||||||+||+++.+  ..++++|||++....
T Consensus        79 vmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~  155 (321)
T d1tkia_          79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccc
Confidence                                          3899999999999   99999999999999854  478999999987653


Q ss_pred             cCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcccc
Q 039073          149 VDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELLS  228 (257)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~~  228 (257)
                      ....              .....+|+.|+|              ||...+..++.++||||+||++|+|++|+.||.+.+
T Consensus       156 ~~~~--------------~~~~~~t~~y~a--------------pe~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~  207 (321)
T d1tkia_         156 PGDN--------------FRLLFTAPEYYA--------------PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             TTCE--------------EEEEESCGGGSC--------------HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             cCCc--------------cccccccccccc--------------chhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC
Confidence            2211              123568899999              666666667899999999999999999999998643

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=230.71  Aligned_cols=145  Identities=26%  Similarity=0.341  Sum_probs=116.6

Q ss_pred             ccccccce-eeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKY-CIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAH-------------------------   97 (257)
Q Consensus        45 ~~~~~~~~-~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~-------------------------   97 (257)
                      .++|++.. .||+|+||+||+|.+ .+++.||||+++...        .+.+|+.                         
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--------~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcH--------HHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            46899875 599999999999965 579999999986432        1222332                         


Q ss_pred             ---------------------------------HHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcC---CCCeEEeec
Q 039073           98 ---------------------------------VLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDS---NLEAFVADF  141 (257)
Q Consensus        98 ---------------------------------~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~---~~~~~l~df  141 (257)
                                                       .+..|++.||.|||++   +|+||||||+||+++.   .+.++|+||
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DF  158 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDF  158 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCcccccccccccccccccccccccccc
Confidence                                             2455899999999999   9999999999999985   457999999


Q ss_pred             cCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCC
Q 039073          142 GTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGT  221 (257)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~  221 (257)
                      |+++........              ....||+.|+|              ||.+.+..|+.++||||+||++|+|++|+
T Consensus       159 G~a~~~~~~~~~--------------~~~~gt~~y~a--------------PE~~~~~~y~~~~DiwSlGvily~lltg~  210 (335)
T d2ozaa1         159 GFAKETTSHNSL--------------TTPCYTPYYVA--------------PEVLGPEKYDKSCDMWSLGVIMYILLCGY  210 (335)
T ss_dssp             TTCEECCCCCCC--------------CCCSCCCSSCC--------------CCCCCGGGGSHHHHHHHHHHHHHHHTTSS
T ss_pred             ceeeeccCCCcc--------------ccccCCcccCC--------------cHHHcCCCCCHHHHHHhhchhHHHHhhCC
Confidence            999876443221              23568999999              66666667889999999999999999999


Q ss_pred             CCCcccc
Q 039073          222 HPGELLS  228 (257)
Q Consensus       222 ~Pf~~~~  228 (257)
                      +||.+.+
T Consensus       211 ~Pf~~~~  217 (335)
T d2ozaa1         211 PPFYSNH  217 (335)
T ss_dssp             CSCEETT
T ss_pred             CCCCCCC
Confidence            9998654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-31  Score=227.89  Aligned_cols=151  Identities=25%  Similarity=0.356  Sum_probs=118.2

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHHH---------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLST---------------------  101 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~---------------------  101 (257)
                      ..++|++.+.||+|+||+||+|.+ .+|+.||||+++.... .....+.+.+|+.++..                     
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~   94 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD   94 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc-ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccc
Confidence            357899999999999999999965 5799999999976543 33446677788877443                     


Q ss_pred             ----------------------------------HHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          102 ----------------------------------SVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       102 ----------------------------------~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                        |++.||.|||++   +|+||||||+||+++.++.++++|||++...
T Consensus        95 ~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          95 FTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CCCCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             cceEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceecc
Confidence                                              899999999999   9999999999999999999999999999865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ....                ....||+.|+|||++.+.             ..++.++||||+||++|+|++|++||.+.
T Consensus       172 ~~~~----------------~~~~~t~~y~aPE~~~~~-------------~~~~~~~DiwSlGvil~ell~g~~pf~~~  222 (346)
T d1cm8a_         172 DSEM----------------TGYVVTRWYRAPEVILNW-------------MRYTQTVDIWSVGCIMAEMITGKTLFKGS  222 (346)
T ss_dssp             CSSC----------------CSSCSCGGGCCTHHHHTT-------------TCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc----------------ccccccccccCHHHHcCC-------------CCCCccchhhcchHHHHHHHHCcCCCCCC
Confidence            4322                224689999995544322             23588999999999999999999999764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=222.41  Aligned_cols=147  Identities=28%  Similarity=0.432  Sum_probs=115.6

Q ss_pred             HhhccccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           42 INATEEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        42 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      ....++|++.+.||+|+||.||+|..+ |+.||||+++....     .+.+.+|+.+                       
T Consensus         3 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~~-----~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~   76 (262)
T d1byga_           3 ALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT-----AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL   76 (262)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CC
T ss_pred             ccCHHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHHH-----HHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcE
Confidence            445678999999999999999999884 78899999975432     3456666665                       


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     ++.||+.|+.|||+.   +++||||||+||+++.++.++++|||+++..
T Consensus        77 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~  153 (262)
T d1byga_          77 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEA  153 (262)
T ss_dssp             EEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC----
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceec
Confidence                                           344899999999999   9999999999999999999999999998865


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHh-CCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLM-GTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~-G~~Pf~~  226 (257)
                      ....                ....++..|+|              ||.+.+..++.++|||||||++|||++ |++||..
T Consensus       154 ~~~~----------------~~~~~~~~y~a--------------PE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~  203 (262)
T d1byga_         154 SSTQ----------------DTGKLPVKWTA--------------PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  203 (262)
T ss_dssp             ------------------------CCTTTSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred             CCCC----------------ccccccccCCC--------------hHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC
Confidence            3221                12356788999              666666778999999999999999998 7999886


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       204 ~  204 (262)
T d1byga_         204 I  204 (262)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8e-31  Score=226.88  Aligned_cols=152  Identities=29%  Similarity=0.383  Sum_probs=116.0

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHH-------------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQ-------------------------------   93 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~-------------------------------   93 (257)
                      -+|+..+.||+|+||+||+|.+ .+|+.||||++..........++-..                               
T Consensus        20 ~~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~E   99 (350)
T d1q5ka_          20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD   99 (350)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEE
T ss_pred             CCcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEe
Confidence            3699999999999999999966 47999999999654322111111000                               


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccC
Q 039073           94 ----------------------NEAHVLSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVD  150 (257)
Q Consensus        94 ----------------------~e~~~l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~  150 (257)
                                            .++..+..|++.||+|||++   +|+||||||+|||++.++ .++|+|||++......
T Consensus       100 y~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~  176 (350)
T d1q5ka_         100 YVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  176 (350)
T ss_dssp             CCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT
T ss_pred             ccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCC
Confidence                                  12334667999999999999   999999999999999775 8999999998866433


Q ss_pred             CCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          151 SSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              ....||..|+|||.+.+             ...++.++||||+||++|||++|+.||...
T Consensus       177 ~~~--------------~~~~gt~~y~aPE~~~~-------------~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         177 EPN--------------VSYICSRYYRAPELIFG-------------ATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             SCC--------------CSCCSCTTSCCHHHHTT-------------CSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             ccc--------------ccccccccccChHHhhc-------------ccCCCcceeecccceEEEehhhCCCCCCCC
Confidence            221              22468999999544332             234689999999999999999999999754

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.97  E-value=9.6e-31  Score=224.32  Aligned_cols=146  Identities=20%  Similarity=0.358  Sum_probs=117.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH-------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV-------------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~-------------------------   98 (257)
                      .++|++.+.||+|+||+||+|.. .+|+.||||+++...      .+.+.+|+.+                         
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH------HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            36899999999999999999966 579999999987543      2345556555                         


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCC-CeEEeeccCccccccCC
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNL-EAFVADFGTARLLHVDS  151 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~-~~~l~dfg~~~~~~~~~  151 (257)
                                                +..||+.||.|||++   +|+||||||+|||++.++ .++++|||++.......
T Consensus       108 ~~v~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~  184 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ  184 (328)
T ss_dssp             EEEEECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC
T ss_pred             eEEEeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCC
Confidence                                      344899999999999   999999999999999765 58999999998664332


Q ss_pred             CCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          152 SNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ..              ....+|+.|+|||.+....             .++.++|+||+||++|++++|+.||..
T Consensus       185 ~~--------------~~~~~t~~y~aPE~~~~~~-------------~~~~~~DiwslG~~l~e~~~g~~pf~~  232 (328)
T d3bqca1         185 EY--------------NVRVASRYFKGPELLVDYQ-------------MYDYSLDMWSLGCMLASMIFRKEPFFH  232 (328)
T ss_dssp             CC--------------CSCCSCGGGCCHHHHTTCC-------------CCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             cc--------------cccccCccccCcccccCCC-------------CCCcccchhhhhhhhHHhccCCCCCCC
Confidence            21              2346889999955543322             258899999999999999999999964

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-31  Score=224.64  Aligned_cols=158  Identities=25%  Similarity=0.362  Sum_probs=124.4

Q ss_pred             HHHhhccccccceeeeecCceeEEEEEe------CCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------
Q 039073           40 DLINATEEFHIKYCIGTGGYGSVYKAEL------PDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------   98 (257)
Q Consensus        40 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------   98 (257)
                      .|....++|++.+.||+|+||+||+|+.      .+++.||||+++....  ......+.+|+.+               
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~E~~~~~~l~~HpnIv~~~g   94 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHMNIVNLLG   94 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC--HHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence            4556678999999999999999999964      3467899999976432  2234456666655               


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCC
Q 039073           99 -------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDI  123 (257)
Q Consensus        99 -------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dL  123 (257)
                                                                             ++.||+.|+.|||++   +++||||
T Consensus        95 ~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDL  171 (311)
T d1t46a_          95 ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDL  171 (311)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred             EEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeeccc
Confidence                                                                   234899999999999   9999999


Q ss_pred             CCCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCC
Q 039073          124 SSNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTE  203 (257)
Q Consensus       124 kp~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~  203 (257)
                      ||+||+++.++.++++|||+++..........           .....||+.|+|              ||...+..++.
T Consensus       172 Kp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~-----------~~~~~gt~~y~a--------------PE~~~~~~~~~  226 (311)
T d1t46a_         172 AARNILLTHGRITKICDFGLARDIKNDSNYVV-----------KGNARLPVKWMA--------------PESIFNCVYTF  226 (311)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCTTSCTTSEE-----------CSSSEECGGGCC--------------HHHHHHCCCCH
T ss_pred             ccccccccccCcccccccchheeccCCCcceE-----------eeecccChHHcC--------------HHHhcCCCCCC
Confidence            99999999999999999999986643221110           123578999999              66666667899


Q ss_pred             ccchhhHHHHHHHHHh-CCCCCccc
Q 039073          204 KCDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       204 ~~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      ++|||||||++|||++ |.+||+..
T Consensus       227 ~~DIwS~G~~l~ellt~g~p~~~~~  251 (311)
T d1t46a_         227 ESDVWSYGIFLWELFSLGSSPYPGM  251 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             cccccchHHHHHHHHhCCCCCCCCC
Confidence            9999999999999998 66667654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=224.03  Aligned_cols=157  Identities=25%  Similarity=0.349  Sum_probs=118.0

Q ss_pred             HHhhccccccceeeeecCceeEEEEEeC-C-------CCEEEEEEcCccccccHHHHHHHHHHHHH--------------
Q 039073           41 LINATEEFHIKYCIGTGGYGSVYKAELP-D-------GKVVALKKLHQSETEDSAFVKSFQNEAHV--------------   98 (257)
Q Consensus        41 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~-------~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------   98 (257)
                      |..+.++|++.+.||+|+||.||+|+.. +       +..||||+++.....  .....+.+|...              
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~e~~~l~~~~~HpnIv~~~   85 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATE--KDLSDLISEMEMMKMIGKHKNIINLL   85 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccCh--HHHHHHHHHHHHHHHhcCCCeEEecc
Confidence            3355689999999999999999999542 2       347999999765432  223445555443              


Q ss_pred             ------------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCC
Q 039073           99 ------------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDIS  124 (257)
Q Consensus        99 ------------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLk  124 (257)
                                                                            ++.|++.||.|||++   +++|||||
T Consensus        86 ~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiK  162 (299)
T d1fgka_          86 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLA  162 (299)
T ss_dssp             EEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred             cccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeec
Confidence                                                                  334899999999999   99999999


Q ss_pred             CCCeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCc
Q 039073          125 SNNILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEK  204 (257)
Q Consensus       125 p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~  204 (257)
                      |+||+++.++.++|+|||++...........           .....|++.|+|              ||.+.+..++.+
T Consensus       163 p~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~-----------~~~~~~~~~y~a--------------PE~l~~~~y~~k  217 (299)
T d1fgka_         163 ARNVLVTEDNVMKIADFGLARDIHHIDYYKK-----------TTNGRLPVKWMA--------------PEALFDRIYTHQ  217 (299)
T ss_dssp             GGGEEECTTCCEEECSTTCCCCGGGCCTTCC-----------CTTSCCGGGGSC--------------HHHHHHCCCCHH
T ss_pred             ccceeecCCCCeEeccchhhccccccccccc-----------cccCCCChhhhh--------------hhHhcCCCCCch
Confidence            9999999999999999999987754432211           123568889999              666677778999


Q ss_pred             cchhhHHHHHHHHHh-CCCCCccc
Q 039073          205 CDVYSFGVVALKVLM-GTHPGELL  227 (257)
Q Consensus       205 ~DiwSlG~~l~ell~-G~~Pf~~~  227 (257)
                      +||||||+++|||++ |++||.+.
T Consensus       218 ~DiwS~Gvvl~ell~~g~~p~~~~  241 (299)
T d1fgka_         218 SDVWSFGVLLWEIFTLGGSPYPGV  241 (299)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hhhHHhHHHHHHhccCCCCCCCCC
Confidence            999999999999998 79999754

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=220.28  Aligned_cols=150  Identities=23%  Similarity=0.370  Sum_probs=119.6

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHH------------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVL------------------------   99 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l------------------------   99 (257)
                      .++|++.+.||+|+||+||+|.+ .+++.||||+++..... ......+.+|+.++                        
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS-TTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCC-hHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            36899999999999999999965 57999999999765433 23456777777763                        


Q ss_pred             ---------------------------HHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          100 ---------------------------STSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       100 ---------------------------~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                 ..|++.||+|||++   +|+||||||+||+++.++.++++|||.+........
T Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~  156 (292)
T d1unla_          80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS
T ss_pred             eeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCCCc
Confidence                                       34899999999999   999999999999999999999999999987654322


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCC-CCCccchhhHHHHHHHHHhCCCCCc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMV-VTEKCDVYSFGVVALKVLMGTHPGE  225 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~-~~~~~DiwSlG~~l~ell~G~~Pf~  225 (257)
                      ..             ....++..|.|              ||.+.... ++.++||||+||++|||++|+.||.
T Consensus       157 ~~-------------~~~~~~~~~~~--------------pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  203 (292)
T d1unla_         157 CY-------------SAEVVTLWYRP--------------PDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_dssp             CC-------------CSCCSCGGGCC--------------HHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred             cc-------------eeeccccchhh--------------hhHhccCCCCCchhhccccchHHHHHhhCCCCCC
Confidence            11             12345666777              44444433 5889999999999999999999974

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=224.99  Aligned_cols=164  Identities=25%  Similarity=0.362  Sum_probs=128.6

Q ss_pred             CCcCHHHHHhhccccccceeeeecCceeEEEEEeC------CCCEEEEEEcCccccccHHHHHHHHHHHHH---------
Q 039073           34 GKISYEDLINATEEFHIKYCIGTGGYGSVYKAELP------DGKVVALKKLHQSETEDSAFVKSFQNEAHV---------   98 (257)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------   98 (257)
                      ...--++|....++|++.+.||+|+||+||+|.+.      +++.||||+++....  ......+.+|+.+         
T Consensus         8 ~~~~~~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~--~~~~~~~~~E~~il~~l~h~nI   85 (308)
T d1p4oa_           8 DVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS--MRERIEFLNEASVMKEFNCHHV   85 (308)
T ss_dssp             SCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC--HHHHHHHHHHHHHGGGCCCTTB
T ss_pred             cCcCccceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccC--hHHHHHHHHHHHHHHHcCCCCE
Confidence            33334566677799999999999999999999542      357899999976432  2234567777766         


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCC
Q 039073           99 ----------------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSN  126 (257)
Q Consensus        99 ----------------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~  126 (257)
                                                                          ++.|++.|+.|||++   +|+||||||+
T Consensus        86 v~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~  162 (308)
T d1p4oa_          86 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAAR  162 (308)
T ss_dssp             CCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGG
T ss_pred             eeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCC
Confidence                                                                344899999999999   9999999999


Q ss_pred             CeEEcCCCCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccc
Q 039073          127 NILLDSNLEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCD  206 (257)
Q Consensus       127 nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~D  206 (257)
                      ||+++.++++||+|||+++.........           ......||+.|+|              ||.+.+..++.++|
T Consensus       163 NiLld~~~~~Kl~DFGla~~~~~~~~~~-----------~~~~~~~t~~y~a--------------Pe~l~~~~~~~~~D  217 (308)
T d1p4oa_         163 NCMVAEDFTVKIGDFGMTRDIYETDYYR-----------KGGKGLLPVRWMS--------------PESLKDGVFTTYSD  217 (308)
T ss_dssp             GEEECTTCCEEECCTTCCCGGGGGGCEE-----------GGGSSEECGGGCC--------------HHHHHHCCCCHHHH
T ss_pred             ceeecCCceEEEeecccceeccCCccee-----------eccceecccccCC--------------HHHHccCCCCcccc
Confidence            9999999999999999998664332111           1123467899999              66777777889999


Q ss_pred             hhhHHHHHHHHHhC-CCCCccc
Q 039073          207 VYSFGVVALKVLMG-THPGELL  227 (257)
Q Consensus       207 iwSlG~~l~ell~G-~~Pf~~~  227 (257)
                      +||||+++|||++| .+||.+.
T Consensus       218 v~S~G~il~El~t~~~~p~~~~  239 (308)
T d1p4oa_         218 VWSFGVVLWEIATLAEQPYQGL  239 (308)
T ss_dssp             HHHHHHHHHHHHHTSCCTTTTS
T ss_pred             cccHHHHHHHHHhCCCCCCCCC
Confidence            99999999999997 5888764

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-31  Score=227.01  Aligned_cols=150  Identities=25%  Similarity=0.344  Sum_probs=118.9

Q ss_pred             hccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH----------------------
Q 039073           44 ATEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS----------------------  100 (257)
Q Consensus        44 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~----------------------  100 (257)
                      ..++|++.+.||+|+||+||+|.+ .+|+.||||++...... ....+.+.+|+.++.                      
T Consensus        16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS-IIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred             CCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcC-hHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence            468899999999999999999965 57999999999865433 333456777777643                      


Q ss_pred             ---------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          101 ---------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       101 ---------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                       .||+.||.|||++   +|+||||||+||+++.++.++++|||++...
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~  171 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHT  171 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CC
T ss_pred             CceEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhccc
Confidence                                             3899999999999   9999999999999999999999999998654


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcC-CCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTM-VVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~-~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....                ....|++.|+|||++              .+. .++.++||||+||++|+|++|++||.+
T Consensus       172 ~~~~----------------~~~~g~~~y~apE~~--------------~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~  221 (348)
T d2gfsa1         172 DDEM----------------TGYVATRWYRAPEIM--------------LNWMHYNQTVDIWSVGCIMAELLTGRTLFPG  221 (348)
T ss_dssp             TGGG----------------SSSCHHHHTSCHHHH--------------TTCSCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             Cccc----------------ccccccccccCchhh--------------cCCccCCcccchhhhhHHHHHHHhCCCCCCC
Confidence            3221                224688999995543              333 358899999999999999999999975


Q ss_pred             c
Q 039073          227 L  227 (257)
Q Consensus       227 ~  227 (257)
                      .
T Consensus       222 ~  222 (348)
T d2gfsa1         222 T  222 (348)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=228.50  Aligned_cols=157  Identities=29%  Similarity=0.418  Sum_probs=116.4

Q ss_pred             ccccccceeeeecCceeEEEEEe----CCCCEEEEEEcCccccc-cHHHHHHHHHHHHH---------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL----PDGKVVALKKLHQSETE-DSAFVKSFQNEAHV---------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~---------------------   98 (257)
                      .++|++.+.||+|+||+||+|..    .+|+.||||+++..... .....+.+.+|+.+                     
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            47799999999999999999954    25889999998653211 11111223333333                     


Q ss_pred             -------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 -------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 -------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                     +..|++.|+.|||++   +++||||||+||+++.++.++|+|||++...
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhhh
Confidence                                           445999999999999   9999999999999999999999999998765


Q ss_pred             ccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          148 HVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      .......            .....|++.|++||.+....            ..++.++||||+||++|+|++|+.||.+.
T Consensus       180 ~~~~~~~------------~~~~~g~~~~~~pe~~~~~~------------~~~~~ksDIWSlG~iLyelltG~~PF~~~  235 (322)
T d1vzoa_         180 VADETER------------AYDFCGTIEYMAPDIVRGGD------------SGHDKAVDWWSLGVLMYELLTGASPFTVD  235 (322)
T ss_dssp             CGGGGGG------------GCGGGSCCTTCCHHHHTTCC---------------CTHHHHHHHHHHHHHHHHSSCTTSCT
T ss_pred             ccccccc------------ccccccccccchhHHhhcCC------------cCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            4322111            12356889999955443221            12578999999999999999999999865


Q ss_pred             c
Q 039073          228 S  228 (257)
Q Consensus       228 ~  228 (257)
                      +
T Consensus       236 ~  236 (322)
T d1vzoa_         236 G  236 (322)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.6e-30  Score=221.06  Aligned_cols=151  Identities=23%  Similarity=0.250  Sum_probs=116.1

Q ss_pred             ccccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHVLS-----------------------  100 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-----------------------  100 (257)
                      .++|++.+.||+|+||+||+|.+ .+|+.||||++...... ....+.+.+|+.++.                       
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~-~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN-QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcC-HHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            47899999999999999999965 47999999999765433 334556777777643                       


Q ss_pred             -------------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccccc
Q 039073          101 -------------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHV  149 (257)
Q Consensus       101 -------------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~  149 (257)
                                                     .|++.|+.|||++   ||+||||||+||+++.++.++++|||.++....
T Consensus        95 ~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~  171 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_dssp             CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             ceeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhcccc
Confidence                                           3899999999999   999999999999999999999999998776543


Q ss_pred             CCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCccc
Q 039073          150 DSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGELL  227 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~~  227 (257)
                      ...              .....||+.|+|              ||++.+..++.++||||+||++|+|++|++||.+.
T Consensus       172 ~~~--------------~~~~~~t~~y~a--------------PE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         172 SFM--------------MTPYVVTRYYRA--------------PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             -----------------------CCTTCC--------------HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc--------------cccccccccccC--------------hhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            221              123568899999              66666667899999999999999999999999754

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-29  Score=212.98  Aligned_cols=149  Identities=30%  Similarity=0.411  Sum_probs=116.9

Q ss_pred             cceeeeecCceeEEEEEeCC----CCEEEEEEcCccccccHHHHHHHHHHHHHHH-------------------------
Q 039073           50 IKYCIGTGGYGSVYKAELPD----GKVVALKKLHQSETEDSAFVKSFQNEAHVLS-------------------------  100 (257)
Q Consensus        50 ~~~~lg~G~~g~V~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~-------------------------  100 (257)
                      +.+.||+|+||+||+|....    ...||||+++..  ......+.+.+|++++.                         
T Consensus        31 ~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          31 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEEETTEEEEEEEECC----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             cceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            35789999999999996532    236899998753  23444677888888743                         


Q ss_pred             ----------------------------HHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCccccccCCC
Q 039073          101 ----------------------------TSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLLHVDSS  152 (257)
Q Consensus       101 ----------------------------~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~~~~~  152 (257)
                                                  .|++.|+.|||+.   +++||||||+||++++++.++|+|||+++.......
T Consensus       109 E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC
T ss_pred             EEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhcccccc
Confidence                                        3899999999999   999999999999999999999999999987654332


Q ss_pred             CCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCCcc
Q 039073          153 NRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPGEL  226 (257)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf~~  226 (257)
                      ....         ......||..|+|              ||......++.++||||||+++|||++|..||..
T Consensus       186 ~~~~---------~~~~~~gt~~y~a--------------PE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~  236 (311)
T d1r0pa_         186 DSVH---------NKTGAKLPVKWMA--------------LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  236 (311)
T ss_dssp             CCTT---------CTTCSSCCGGGSC--------------HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             ccce---------ecccccccccccC--------------hHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCC
Confidence            2111         1123468899999              6666666789999999999999999997777754

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=215.52  Aligned_cols=158  Identities=27%  Similarity=0.396  Sum_probs=115.7

Q ss_pred             cccccceeeeecCceeEEEEEeCCCCEEEEEEcCccccccHHHHHHHHHHHHH---------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETEDSAFVKSFQNEAHV---------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~---------------------------   98 (257)
                      ++|.+.+.||+|+||.||+|+. +|+.||||++.....      +.+..|.++                           
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~------~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~   75 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE------RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ   75 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH------HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch------hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceE
Confidence            5788999999999999999987 588999999865321      222223222                           


Q ss_pred             -----------------------------HHHHHHHHHHHHhhC-----CCCCeEeeCCCCCCeEEcCCCCeEEeeccCc
Q 039073           99 -----------------------------LSTSVAHALSYLHHD-----CTLSIVHRDISSNNILLDSNLEAFVADFGTA  144 (257)
Q Consensus        99 -----------------------------l~~~i~~~l~~LH~~-----~~~~i~H~dLkp~nill~~~~~~~l~dfg~~  144 (257)
                                                   ++.+++.|++|+|+.     ...+|+||||||+||+++.++.+||+|||++
T Consensus        76 ~~lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~  155 (303)
T d1vjya_          76 LWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  155 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcc
Confidence                                         444899999999963     1249999999999999999999999999999


Q ss_pred             cccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHHHHHHHhCCCCC
Q 039073          145 RLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVVALKVLMGTHPG  224 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~ell~G~~Pf  224 (257)
                      +...........         ......||+.|+|||++.......        ...++.++|||||||++|||++|..||
T Consensus       156 ~~~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~--------~~~~~~k~Di~S~Gvvl~el~tg~~~~  218 (303)
T d1vjya_         156 VRHDSATDTIDI---------APNHRVGTKRYMAPEVLDDSINMK--------HFESFKRADIYAMGLVFWEIARRCSIG  218 (303)
T ss_dssp             EEEETTTTEECC-------------CCSCGGGCCHHHHTTCSCTT--------CHHHHHHHHHHHHHHHHHHHHHTBCBT
T ss_pred             ccccCCCcceec---------cccceecccCcCChhhcccccccc--------CCCcCcchhhhhhHHHHHHHhhCCCCC
Confidence            876543321110         112356899999977764432111        112466899999999999999999888


Q ss_pred             ccc
Q 039073          225 ELL  227 (257)
Q Consensus       225 ~~~  227 (257)
                      ...
T Consensus       219 ~~~  221 (303)
T d1vjya_         219 GIH  221 (303)
T ss_dssp             TBC
T ss_pred             Ccc
Confidence            643

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-30  Score=217.67  Aligned_cols=150  Identities=28%  Similarity=0.428  Sum_probs=113.7

Q ss_pred             ccccccceeeeecCceeEEEEEeC-CCC--EEEEEEcCccccccHHHHHHHHHHHHH-----------------------
Q 039073           45 TEEFHIKYCIGTGGYGSVYKAELP-DGK--VVALKKLHQSETEDSAFVKSFQNEAHV-----------------------   98 (257)
Q Consensus        45 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~-----------------------   98 (257)
                      .++|++.+.||+|+||+||+|.+. +|.  .||||++......  ...+.+.+|+++                       
T Consensus         9 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_           9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccCh--HHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            478999999999999999999654 454  4678877543222  224456666665                       


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCC
Q 039073           99 ---------------------------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSN  133 (257)
Q Consensus        99 ---------------------------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~  133 (257)
                                                                   ++.||+.|+.|||+.   +++||||||+||+++.+
T Consensus        87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~  163 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGEN  163 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGG
T ss_pred             EEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCC
Confidence                                                         234899999999999   99999999999999999


Q ss_pred             CCeEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhHHHH
Q 039073          134 LEAFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSFGVV  213 (257)
Q Consensus       134 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~  213 (257)
                      +.+||+|||+++........              ....||..|+|              ||.+.+..++.++|||||||+
T Consensus       164 ~~~kl~DfG~a~~~~~~~~~--------------~~~~gt~~y~a--------------PE~l~~~~~~~~sDvwSfGvi  215 (309)
T d1fvra_         164 YVAKIADFGLSRGQEVYVKK--------------TMGRLPVRWMA--------------IESLNYSVYTTNSDVWSYGVL  215 (309)
T ss_dssp             GCEEECCTTCEESSCEECCC------------------CCTTTCC--------------HHHHHHCEECHHHHHHHHHHH
T ss_pred             CceEEccccccccccccccc--------------cceecCCcccc--------------hHHhccCCCCccceeehhHHH
Confidence            99999999998765432221              12457889999              566666667899999999999


Q ss_pred             HHHHHhC-CCCCccc
Q 039073          214 ALKVLMG-THPGELL  227 (257)
Q Consensus       214 l~ell~G-~~Pf~~~  227 (257)
                      +|||++| .+||.+.
T Consensus       216 l~ell~~~~~p~~~~  230 (309)
T d1fvra_         216 LWEIVSLGGTPYCGM  230 (309)
T ss_dssp             HHHHHTTSCCTTTTC
T ss_pred             HHHHHhcCCCCCCCC
Confidence            9999996 4677653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-28  Score=213.83  Aligned_cols=145  Identities=20%  Similarity=0.284  Sum_probs=113.4

Q ss_pred             cccccceeeeecCceeEEEEEe-CCCCEEEEEEcCccccccHHHHHHHHHHHHH--------------------------
Q 039073           46 EEFHIKYCIGTGGYGSVYKAEL-PDGKVVALKKLHQSETEDSAFVKSFQNEAHV--------------------------   98 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~--------------------------   98 (257)
                      ++|++.+.||+|+||+||+|.. .+|+.||||+++.....    .+.+.+|+.+                          
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~----~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY----TEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccc----hHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            4599999999999999999965 57999999999764322    2233333332                          


Q ss_pred             -----------------------------------------HHHHHHHHHHHHhh-CCCCCeEeeCCCCCCeEEcCCCC-
Q 039073           99 -----------------------------------------LSTSVAHALSYLHH-DCTLSIVHRDISSNNILLDSNLE-  135 (257)
Q Consensus        99 -----------------------------------------l~~~i~~~l~~LH~-~~~~~i~H~dLkp~nill~~~~~-  135 (257)
                                                               +..|++.|+.|||+ +   +|+||||||+||+++.++. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~  165 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSP  165 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETT
T ss_pred             eeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcc
Confidence                                                     33489999999998 6   9999999999999986654 


Q ss_pred             -----eEEeeccCccccccCCCCCCccccccCCCcccccccccccchhhhHhhhcCCCCchhhhhhhcCCCCCccchhhH
Q 039073          136 -----AFVADFGTARLLHVDSSNRPYEWALTDTLPQVNKIIGCISYYALWFYFQRHNLMPFHVELAYTMVVTEKCDVYSF  210 (257)
Q Consensus       136 -----~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~~pe~~~~~~~~~~~DiwSl  210 (257)
                           ++++|||.+.......                ....||+.|+|              ||...+..++.++|+||+
T Consensus       166 ~~~~~~kl~dfg~s~~~~~~~----------------~~~~gt~~y~a--------------PE~~~~~~~~~~~DiwSl  215 (362)
T d1q8ya_         166 ENLIQIKIADLGNACWYDEHY----------------TNSIQTREYRS--------------PEVLLGAPWGCGADIWST  215 (362)
T ss_dssp             TTEEEEEECCCTTCEETTBCC----------------CSCCSCGGGCC--------------HHHHHTCCCCTHHHHHHH
T ss_pred             cccceeeEeeccccccccccc----------------ccccccccccC--------------hhhccccCCCccccccch
Confidence                 8999999987553222                22468999999              555666667999999999


Q ss_pred             HHHHHHHHhCCCCCccc
Q 039073          211 GVVALKVLMGTHPGELL  227 (257)
Q Consensus       211 G~~l~ell~G~~Pf~~~  227 (257)
                      ||++++|++|+.||...
T Consensus       216 G~il~el~~g~~pF~~~  232 (362)
T d1q8ya_         216 ACLIFELITGDFLFEPD  232 (362)
T ss_dssp             HHHHHHHHHSSCCC---
T ss_pred             HHHHHHHHHCCCCCCCC
Confidence            99999999999999754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=9.3e-19  Score=137.78  Aligned_cols=96  Identities=20%  Similarity=0.217  Sum_probs=71.8

Q ss_pred             cccceeeeecCceeEEEEEeCCCCEEEEEEcCcccccc---------------HHHHHHHHHHHHH--------------
Q 039073           48 FHIKYCIGTGGYGSVYKAELPDGKVVALKKLHQSETED---------------SAFVKSFQNEAHV--------------   98 (257)
Q Consensus        48 ~~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~~e~~~--------------   98 (257)
                      +.+.+.||+|+||+||+|...+|+.||||+++......               .........|...              
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            35789999999999999988889999999876432110               0001122233332              


Q ss_pred             --------------------------HHHHHHHHHHHHhhCCCCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073           99 --------------------------LSTSVAHALSYLHHDCTLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus        99 --------------------------l~~~i~~~l~~LH~~~~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                                                +..|++.++.+||++   +++||||||+||+++.++ ++++|||.+...
T Consensus        82 ~~~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~~-~~liDFG~a~~~  152 (191)
T d1zara2          82 WEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEEG-IWIIDFPQSVEV  152 (191)
T ss_dssp             EETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETTE-EEECCCTTCEET
T ss_pred             ecCCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCCC-EEEEECCCcccC
Confidence                                      445899999999999   999999999999999654 889999998654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.79  E-value=0.0043  Score=50.15  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARL  146 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~  146 (257)
                      ..|++|+|+.+.|++++.+...-+.||+.+..
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccccceeEeccccccc
Confidence            35799999999999999887778999998754

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.32  E-value=0.011  Score=46.09  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             eEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          118 IVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       118 i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ++|+|+.|.||+++.++..-+.||+.+...
T Consensus       185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T d1j7la_         185 FSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             EEEeeccCcceeecCCceEEEeechhcccC
Confidence            799999999999997766679999876643

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.031  Score=45.25  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CCCeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          115 TLSIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       115 ~~~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      ..+++|+|+.+.|++++.+  ..+.||+-+...
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~g  221 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARNG  221 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCEE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhcccC
Confidence            4579999999999999743  458899877644

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=94.70  E-value=0.061  Score=41.25  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCcccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLL  147 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~  147 (257)
                      .++|+|+.|.||+++.+..+.+.||+.+...
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~g  206 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGVA  206 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcccC
Confidence            3899999999999998766779999877643

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=94.29  E-value=0.063  Score=44.61  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             CeEeeCCCCCCeEEcCCCCeEEeeccCccccc
Q 039073          117 SIVHRDISSNNILLDSNLEAFVADFGTARLLH  148 (257)
Q Consensus       117 ~i~H~dLkp~nill~~~~~~~l~dfg~~~~~~  148 (257)
                      .++|+|+.+.||+++.++ +++.||..+...+
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G~  254 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAFYGP  254 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhcccCC
Confidence            689999999999998764 8999998876543

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.72  E-value=1.6  Score=35.46  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             cccccceeeeecCceeEEEEEeCC--------CCEEEEEEcC
Q 039073           46 EEFHIKYCIGTGGYGSVYKAELPD--------GKVVALKKLH   79 (257)
Q Consensus        46 ~~~~~~~~lg~G~~g~V~~~~~~~--------~~~vaiK~~~   79 (257)
                      +++++ +.|+.|-...+|+++..+        +..|++++.-
T Consensus        43 ~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g   83 (395)
T d1nw1a_          43 EHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF   83 (395)
T ss_dssp             GGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC
T ss_pred             cceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC
Confidence            34444 578889999999997543        3567777765