Citrus Sinensis ID: 039095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MDSAKGDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRKRYNFIGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEEccEEcccccccccccccccccEEcccccHHHHHHHHHcccccccEEcEEEccccccccccccccccccccccccEEEccccccccccccccccccccEEEccEEccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEcccccccccccEEEEEEEEcccccccHHHHccccccccccHHHcEEEHHcccccHHHHHHHccHHHccccccccccccHccccccccccccccHEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccEEEEEcccccccEEEEcccccEcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mdsakgddghisydlrenpkkswkfssfnhaasasastqesqckvCGKDFESLKALYGhmrhhsrrereRIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKrskrkrynfigsSSISTLNESLSSVTEIDQEVVQTAISLMMLSRgvqdwgkfcsssefscndsvTIEVKSFGkkkrlltnragcfvsngngcllkkprleklDSIVLYEkeedechevgsgaesdegkkVKLEVFIEKFYEegefempkldvkpgsvasddeigkessedlmeedgldaeagkriitstsskkvgfnacyaeyggdssskamcnasdydvfddpqkeseiRCQACNKIFCSrralgghqrmhsakrsslpvkttmftetephsklvKLECIEDLMQrgnkehtcRICLKVFAtgqalgghkraHLVKNLDNILQDITveqdysdlsndldlnisntleeevhgdagseLWVVEGKQHKHERLLSMMAS
Flexible Loop (DISEMBL)
mdsakgddghisydlrenpkKSWKFSSFNHAASasastqesqcKVCGKDFESLKALYGhmrhhsrrereriqCKECGKALLSAKSLSNHMRVHSQklracnesgavkslvlkkkrskrkrynfigsssistlneslsSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKsfgkkkrlltnragcfvsngngcllkkprlEKLDSIVLYEKeedechevgsgaesdegkkvKLEVFIEKFYeegefempkldvkpgsvASDDEIGkessedlmeedgldaeagkriitstsskkvgfnACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRalgghqrmhsakrsslpvkttmftetephsklvKLECIEDLMQRGNKEHTCRICLKVFAtgqalgghkRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Low Complexity Region (SEG)
MDSAKGDDGHISYDLRENPKKSWKFSSFNHaasasasTQESQCKVCGKDFESLKALYGHMrhhsrrererIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAvkslvlkkkrskrkRYNFIGsssistlneslssVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYsdlsndldlnisnTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Disordered region (IsUnstruct)
*******************************************KVCGKDFESLKALYGH*************CKECGKAL******************************************FI**************VTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYE********************VKLEVFIEKFYEE**************************************************KVGFNACYAEYGG***********DYDVF*******EIRCQACNKIFCSRRAL****************************KLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVV****************
Disordered Region (DISOPRED)
MDSAKGDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGA**************************************QEVVQTAISLMMLSRGVQDWGKFCSSSEFSCN****************LTNRAGCFVSNGNGCL*****************EEDECHEVGSGAESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCN***********KE*EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETE********************EHTCRICLKVFATGQALGGHKRAHLV**********************LDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMA*
Disordered Region (DISEMBL)
********GHISYDLRENPKKSWKFSSFN***************VCGKDFESLKALYG************IQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRKRYNFIGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKE***************GKKVKLEVFIEKFYEEGEFEMPKLDVKP******************EEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRAL************SLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Disordered Region (DISPRO)
***********SYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRV**************************************************DQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVS****************************************KKVKLEVFIEK****************************************************SKKVGFNACYAEYGGD********************ESEIRCQACNKIFCSRRAL********************************************KEHTCRICLKVFATGQAL******************************DLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSAKGDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRKRYNFIGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q9M202	288	Zinc finger protein ZAT9	yes	no	0.245	0.420	0.360	2e-13
Q9SSW2	273	Zinc finger protein AZF2	no	no	0.229	0.413	0.358	2e-10
Q9SHD0	314	Zinc finger protein ZAT4	no	no	0.217	0.340	0.341	1e-09
Q681X4	286	Zinc finger protein ZAT5	no	no	0.239	0.412	0.293	6e-09
Q42430	261	Zinc finger protein 1 OS=	N/A	no	0.184	0.348	0.367	8e-09
Q39092	267	Zinc finger protein ZAT1	no	no	0.150	0.277	0.390	8e-08
Q9SSW1	245	Zinc finger protein AZF1	no	no	0.174	0.351	0.356	1e-07
O22533	238	Zinc finger protein ZAT6	no	no	0.245	0.508	0.340	3e-07
O65499	284	Zinc finger protein ZAT3	no	no	0.199	0.345	0.273	6e-07
Q96289	227	Zinc finger protein ZAT10	no	no	0.172	0.374	0.391	1e-06

>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 12/133 (9%)

Query: 332 YDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVK 391
           Y+  +    +   +C+ C K+F S +ALGGH+  H   R S   KT   +ETE       
Sbjct: 161 YNKINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNRVS-NNKTEQRSETE------- 212

Query: 392 LECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSN 451
               ++++    + H C ICL+VFA+GQALGGHKR+H V NL ++ Q   V ++ S    
Sbjct: 213 ---YDNVVVVAKRIHECPICLRVFASGQALGGHKRSHGVGNL-SVNQQRRVHRNESVKQR 268

Query: 452 DLDLNISNTLEEE 464
            +DLN+    EE+
Sbjct: 269 MIDLNLPAPTEED 281

Probable transcription factor that may be involved in stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW2|AZF2_ARATH Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 313 CYAEYGGDSSSKAMCNASDYDVFDDPQ-KESEIRCQACNKIFCSRRALGGHQRMHSAKRS 371
           C      D  S+   +     +   P+ K    +C  C K F S +ALGGH+  H  K  
Sbjct: 74  CLLMLAKDQPSQTRFHQQSQSLTPPPESKNLPYKCNVCEKAFPSYQALGGHKASHRIKPP 133

Query: 372 SLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAH 428
           ++ + TT    T P   +V  E  +  +    K H C IC KVF TGQALGGHKR H
Sbjct: 134 TV-ISTTADDSTAPTISIVAGE--KHPIAASGKIHECSICHKVFPTGQALGGHKRCH 187

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHD0|ZAT4_ARATH Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 19/126 (15%)

Query: 344 IRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGN 403
            +C+ C K+F S +ALGGH+  H   ++ +       T+TE     V+ E +  L  +  
Sbjct: 194 FKCETCGKVFKSYQALGGHRASHKKNKACM-------TKTEQ----VETEYV--LGVKEK 240

Query: 404 KEHTCRICLKVFATGQALGGHKRAHLVKNLD-----NILQDITVEQDYSDLSNDLDLNIS 458
           K H C IC +VF +GQALGGHKR+H   N+      ++ Q + +E++ S     +DLN+ 
Sbjct: 241 KVHECPICFRVFTSGQALGGHKRSH-GSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLP 299

Query: 459 NTLEEE 464
              EE+
Sbjct: 300 APNEED 305

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 15/133 (11%)

Query: 346 CQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVK-------------- 391
           C+ CN+ F S +ALGGH+  H   R+S   KT +   T+P S   +              
Sbjct: 117 CKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRL-PLTQPKSSASEEGQNSHFKVSGSAL 175

Query: 392 LECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSN 451
                +++ + NK H C IC   F +GQALGGH R H            T E   +    
Sbjct: 176 ASQASNIINKANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEE 235

Query: 452 DLDLNISNTLEEE 464
           ++++NI  ++E++
Sbjct: 236 EIEINIGRSMEQQ 248

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 338 PQKES-------EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLV 390
           PQ ES       E +C  C K F S +ALGGH+  H  K+ S P            +   
Sbjct: 77  PQPESFAAPVPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAA 136

Query: 391 KLECIEDLMQRG--------NKEHTCRICLKVFATGQALGGHKRAH 428
            L   E              N+ H C IC K F TGQALGGHKR H
Sbjct: 137 ILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKH 182

Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes.

Triticum aestivum (taxid: 4565)

>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 346 CQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKE 405
           C+ C K+F S +ALGGH+  H  K            ET+   +L   E  +   +  +  
Sbjct: 162 CETCEKVFKSYQALGGHRASHKKK----------IAETD---QLGSDELKKKKKKSTSSH 208

Query: 406 HTCRICLKVFATGQALGGHKRAHLVKN 432
           H C IC KVF +GQALGGHKR+H   N
Sbjct: 209 HECPICAKVFTSGQALGGHKRSHASAN 235

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW1|AZF1_ARATH Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETE----PHSKLVKLE 393
           P    + +C  C K F S +ALGGH+  H       P  T++ +  +             
Sbjct: 91  PSDHRDYKCTVCGKSFSSYQALGGHKTSHRK-----PTNTSITSGNQELSNNSHSNSGSV 145

Query: 394 CIEDLMQRGN------KEHTCRICLKVFATGQALGGHKRAH 428
            I   +  GN      K HTC IC K FA+GQALGGHKR H
Sbjct: 146 VINVTVNTGNGVSQSGKIHTCSICFKSFASGQALGGHKRCH 186

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner.

Arabidopsis thaliana (taxid: 3702)

>sp|O22533|ZAT6_ARATH Zinc finger protein ZAT6 OS=Arabidopsis thaliana GN=ZAT6 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 345 RCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNK 404
           +C  C+K F S +ALGGH+  H   R S  +  +   +    S  +    I        K
Sbjct: 90  KCSVCDKAFSSYQALGGHKASH---RKSFSLTQSAGGDELSTSSAITTSGISGGGGGSVK 146

Query: 405 EHTCRICLKVFATGQALGGHKRAHL-------VKNLDNILQDITVEQDYSDLSNDLDLNI 457
            H C IC K FATGQALGGHKR H        V +  +  +D+      S      DLNI
Sbjct: 147 SHVCSICHKSFATGQALGGHKRCHYEGKNGGGVSSSVSNSEDVGSTSHVSSGHRGFDLNI 206

Query: 458 SNTLE-EEVHGD 468
               E   V+GD
Sbjct: 207 PPIPEFSMVNGD 218

Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture.

Arabidopsis thaliana (taxid: 3702)

>sp|O65499|ZAT3_ARATH Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 30/128 (23%)

Query: 344 IRCQACNKIFCSRRALGGHQRMHSAKRSSL--------PVKTTMFTETEPHSKLVKLECI 395
             C  C K+F S +ALGGH+  H   +           P+  +  +  +   K++     
Sbjct: 162 FECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTF--- 218

Query: 396 EDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSNDLDL 455
                  +  H C IC +VF++GQALGGH R H  K  + +            +S  LDL
Sbjct: 219 -------SGHHKCNICFRVFSSGQALGGHMRCHWEKEEEPM------------ISGALDL 259

Query: 456 NISNTLEE 463
           N+  T+++
Sbjct: 260 NVPPTIQD 267

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96289|ZAT10_ARATH Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 345 RCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNK 404
           +C  C+K F S +ALGGH+  H    S      T+    + HS              G K
Sbjct: 81  KCSVCDKTFSSYQALGGHKASHRKNLSQ-----TLSGGGDDHSTSSATTTSAVTTGSG-K 134

Query: 405 EHTCRICLKVFATGQALGGHKRAHLVKNLDNI 436
            H C IC K F +GQALGGHKR H   N +NI
Sbjct: 135 SHVCTICNKSFPSGQALGGHKRCHYEGN-NNI 165

Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
224141483	549	predicted protein [Populus trichocarpa]	0.918	0.823	0.373	1e-69
255570256	577	zinc finger protein, putative [Ricinus c	0.959	0.818	0.352	9e-67
224080227	565	predicted protein [Populus trichocarpa]	0.910	0.792	0.351	1e-64
359489021	801	PREDICTED: uncharacterized protein LOC10	0.924	0.568	0.341	2e-50
147819292	1073	hypothetical protein VITISV_019273 [Viti	0.922	0.423	0.342	2e-50
359491301	563	PREDICTED: uncharacterized protein LOC10	0.900	0.786	0.328	3e-37
225423513	522	PREDICTED: uncharacterized protein LOC10	0.855	0.806	0.296	3e-35
255547263	557	hypothetical protein RCOM_1470470 [Ricin	0.886	0.782	0.293	6e-33
224098958	509	predicted protein [Populus trichocarpa]	0.819	0.791	0.297	1e-29
224112130	497	predicted protein [Populus trichocarpa]	0.798	0.790	0.298	7e-28

>gi|224141483|ref|XP_002324101.1| predicted protein [Populus trichocarpa] gi|222867103|gb|EEF04234.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 196/525 (37%), Positives = 275/525 (52%), Gaps = 73/525 (13%)

Query: 13  YDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQ 72
           + LRE PKKSWKFS  NH  S S   + ++C+VCGK+F S K+L+GHMRHHS +ER+ + 
Sbjct: 53  HGLREQPKKSWKFSGLNHDGSVSMQ-ETAKCRVCGKEFGSPKSLHGHMRHHSAKERKGVY 111

Query: 73  CKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVL---------KKKRSKRKRYNF 123
           C+ECG+  LS KSLSNHMR+H +KLR  +    +  + L         ++KRS R RY  
Sbjct: 112 CEECGRGFLSLKSLSNHMRLHHKKLRVSSSGPNLVVMALSATETVNLVRRKRSSRMRYKI 171

Query: 124 IGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVK 183
             +SS S  NES+S   +I+QEV + AI+L+M+SRG              CN        
Sbjct: 172 TPNSSFSRSNESVSGF-DIEQEVEEVAITLIMMSRG-------------ECNG-----FD 212

Query: 184 SFGKKKRLLTNRAGCFVSNGNG-CLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGK 242
           S  + KR+     G    +GNG    KK   + LDS  L  K      E   G    E  
Sbjct: 213 SLCQSKRIERGE-GYHGFDGNGFARPKKTGEDYLDSCDLDYKISISGGEGDIGMGYGEAD 271

Query: 243 KVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGK-------------ESSEDLMEED 289
           +V+LEV +E F+++ E + P+LD + G      EI K             ESS DLM   
Sbjct: 272 QVRLEVPMESFHKDVESKSPQLDDESGVEFCGIEIEKGGHGELINNCTVAESSLDLMGGV 331

Query: 290 GLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQAC 349
           GLD  A      S    +  ++A  AE G D+  + M  A+D D+ + P K+ + RC+ C
Sbjct: 332 GLDV-ARLGFQKSIPINQANYDASDAEMGQDARLQ-MVVATDSDITESPSKKGDFRCRIC 389

Query: 350 NKIFCSRRALGGHQRMHSAKRSSLPVKT--------TMFT-ETEPHSKLVKLECIE---- 396
           N+ F S ++LGGHQ  H  ++SS+ +K          +F+ ET+   KLVK+ECI+    
Sbjct: 390 NRNFISYQSLGGHQTFH--RKSSIGLKVDSCKRDIQAIFSPETKAIGKLVKIECIQESVK 447

Query: 397 ---------DLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYS 447
                    D   +  KEH C +C KVF +GQALGGHKRAH  K  +   Q+I V ++ S
Sbjct: 448 QETDGVIVKDCESKEGKEHKCPVCFKVFLSGQALGGHKRAHFPKAREE--QNIAVNREVS 505

Query: 448 DLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS 492
           D+ N   +N+  T+  EV  D   E W      HKHE L+ ++A+
Sbjct: 506 DICNVFTINVPYTVAPEVSNDVRCESW-WPANSHKHEPLVGLIAN 549

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570256|ref|XP_002526088.1| zinc finger protein, putative [Ricinus communis] gi|223534585|gb|EEF36282.1| zinc finger protein, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 299/551 (54%), Gaps = 79/551 (14%)

Query: 2   DSAKGDDGHISYDLRENPKKSWKFSSFNHAASASASTQES-QCKVCGKDFESLKALYGHM 60
           +S  GD+G   Y LRENPKKSWK S  N    +  S QES +C+VCGK FES ++L+GHM
Sbjct: 46  NSNMGDEG--CYGLRENPKKSWKSSFLNDNDDSLLSVQESVECRVCGKQFESARSLHGHM 103

Query: 61  RHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNES--------------GAV 106
           RHHS  ER  ++CKECGK   + +SL+ HMR+HS K R  NES               A 
Sbjct: 104 RHHSVEERNGVRCKECGKGFKTVRSLTGHMRLHSLKNRVSNESRTSPGPNLVVIALPNAK 163

Query: 107 KSLVLKKKRSKRKRYNFIG-SSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGK 165
              ++++KRS R R      +SS S+LNES+S   EI+ EV + A+ LMMLSRGV + G+
Sbjct: 164 TVNLVRRKRSNRTRCKVTSPNSSFSSLNESVSGF-EIEHEVEEVALCLMMLSRGVYESGE 222

Query: 166 FCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCL-LKKPRLEKLDSIVLYEK 224
           F S  E    DS++ E K   + K++ ++     V +G+  +  KK R+EK DS      
Sbjct: 223 FKSVGESMNTDSLSFEAKPLDESKQMGSSDGEIDVFDGDELVKKKKQRVEKFDSCA---- 278

Query: 225 EEDECHEVGSGAESD------EGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIG 278
             D  ++   G++ D      E +K++LE      Y+  + + P++  +      D E+ 
Sbjct: 279 -SDSKNKTSEGSDCDRDMACTEEEKIQLESSTVNSYQPADSKRPEVGDECDWQLCDTEVE 337

Query: 279 K-------------ESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKA 325
           K              SS++  E+ GLD  + + +I  T SKK  F+   AE G DS ++ 
Sbjct: 338 KVIHVEMDSSATESHSSQETREKVGLDLASLEHVIY-TPSKKAVFD---AEMGKDSCTEI 393

Query: 326 MCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVK--------- 376
           +C+ ++   FDD +K+++ +C+ C+K+F + +ALGGHQ +H   +SS  +K         
Sbjct: 394 ICSTAN---FDDSKKKNQFQCRICSKMFLTHQALGGHQTLHRTSKSSAALKIDNCQEGIQ 450

Query: 377 TTMFTE-TEPHSKLVKLECIEDLMQ-------------RGNKEHTCRICLKVFATGQALG 422
           T  F E ++  S+  KL+ I++ ++             + +KEH C IC K+F +GQALG
Sbjct: 451 TNSFPEKSDARSEAGKLDSIKNSVEQEEDGMTTTGYQLKKSKEHKCPICSKLFVSGQALG 510

Query: 423 GHKRAHLVKNLDNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAG-SELWVVEGKQH 481
           GHKRAH  K  +   Q++ ++Q+   +   LD+N+   ++ E + +AG    W   G  +
Sbjct: 511 GHKRAHPAKAKEE--QNMAMQQEVPGICEALDINLPAMIDTESNDEAGFKSCWT--GTIY 566

Query: 482 KHERLLSMMAS 492
           KHE LL ++AS
Sbjct: 567 KHEPLLDVIAS 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080227|ref|XP_002306061.1| predicted protein [Populus trichocarpa] gi|222849025|gb|EEE86572.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 274/541 (50%), Gaps = 93/541 (17%)

Query: 9   GHISYDLRENPKKSWKFSSFNHAASASASTQES-QCKVCGKDFESLKALYGHMRHHSRRE 67
           G  S  +RE PKKSWK S FNH    S STQE+ +C+ CGK+F S K+L+GHMRHH  +E
Sbjct: 49  GPDSCGVREQPKKSWKSSDFNH--DDSVSTQETVKCRFCGKEFGSEKSLHGHMRHHPAKE 106

Query: 68  RERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGA-----VKSLVL---------KK 113
           R+ + C+ECG+  LS KSLSNH R+H +K    +E  A     + S+ L         ++
Sbjct: 107 RKGVYCEECGRGFLSLKSLSNHKRLHREKFTISSEPRASSRPNLVSMALSATEAVNLVRR 166

Query: 114 KRSKRKRYNFIGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFS 173
           KRS R RY    +SS S+LNES+S   +IDQEV + A++L+M+SR               
Sbjct: 167 KRSSRMRYKITPNSSFSSLNESVSGF-DIDQEVEEAALTLIMMSRS-------------E 212

Query: 174 CNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCL-LKKPRLEKLDSIVLYEKEEDECHEV 232
           CN        S  + KR+  +   C V +GN  +  KKPR + LDS  L        H  
Sbjct: 213 CNG-----FDSLCRNKRIERDE-DCHVFHGNELVKPKKPREDNLDSCDL--DSMTSIHGC 264

Query: 233 GSGAESDEGK----KVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGK--------- 279
           G   +++ G+    +V+ EV  E  +++ E + P+LD + G      +I K         
Sbjct: 265 GGEGDTETGRDEENQVRSEVPGETTFKDIESKSPQLDDESGVEFCRIDIEKGDHDEMLTT 324

Query: 280 ----ESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVF 335
               ESS+DLM E GLD  AG     S  S +  F+AC +E G +S  +     S YD+ 
Sbjct: 325 CTEAESSQDLMSEVGLDC-AGSGFEKSIPSNQARFDACNSEMGKESRYQMEVTTSSYDIM 383

Query: 336 DDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVK---------TTMFTETEPH 386
             P K+ +  C+ CN+ F + ++LGGHQ  H  ++S + VK         T    ETE  
Sbjct: 384 QGPSKKGDFTCRICNRKFNTYQSLGGHQTFH--RKSPIEVKVDSCEKDIQTNFSAETEAT 441

Query: 387 SKLVKLECIEDLMQ-------------RGNKEHTCRICLKVFATGQALGGHKRAHLVKNL 433
               KLECI++L +             +  KEH C IC KVF +GQALGGHKRAH ++  
Sbjct: 442 G---KLECIQELAKQESDEVIVKDCESKEGKEHKCSICFKVFLSGQALGGHKRAHFLRAR 498

Query: 434 DNILQDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVV------EGKQHKHERLL 487
           +   Q+  ++Q+   + + L++++  T   E   D   E W V          H HE L+
Sbjct: 499 EE--QNTAMKQEVPGICDALNVDVPYTFAAEASNDVRCESWCVRCESWWPANSHNHEPLM 556

Query: 488 S 488
           +
Sbjct: 557 N 557

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489021|ref|XP_003633858.1| PREDICTED: uncharacterized protein LOC100262792 [Vitis vinifera]

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 261/518 (50%), Gaps = 63/518 (12%)

Query: 15  LRENPKKSWKFSSFNHAASASASTQESQ----CKVCGKDFESLKALYGHMRHHSRRERER 70
           LRENPKKSW+ S  N  A      QE +    CKVCGK F S +A++GHMRHHSR+E   
Sbjct: 33  LRENPKKSWRLSGSNQTAPKQEEEQEREQDHICKVCGKGFNSSRAVFGHMRHHSRQEN-- 90

Query: 71  IQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAV------KSLVLKKKRSKRKRYNFI 124
             C+ECGK   S ++LS HMR HS++ RA +ES          S   ++KRS+R +   +
Sbjct: 91  -LCRECGKGFSSLRALSGHMRCHSERFRAIDESRTSCQSQDETSCPTRRKRSQRYK---M 146

Query: 125 GSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKS 184
            S+   +     SSVT  + E+ + A+ LM+LSR V+ W +F S  E S N+SV  E KS
Sbjct: 147 TSNPSFSNFNDSSSVTLSEPELEEGALCLMLLSRAVRSWEEFYSVPESSDNNSVIAEAKS 206

Query: 185 FGKKKRLLTNRAGCFVSNGN-GCLLKKPRLEKLDSI------VLYEKEEDECHEVGSGAE 237
             +   ++ +    FVS+G     + K + + L+S       VL+EK+  E     SG  
Sbjct: 207 SHQNTPIIKDEGENFVSDGRETSKMLKEKEKMLESCVLESGNVLFEKKTTETGSSDSGFV 266

Query: 238 SDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGK 297
           S    +V+LEV  +   ++      KLDV+      D EI K+   ++  +   D E G 
Sbjct: 267 SHHETRVELEVCADDGLKK------KLDVESQYELCDSEIEKKFHSEIKIKT-TDVELGN 319

Query: 298 RIITSTSSKKVGFNACYAEYGGDSSSK-AMCNASDYDVFDD--------PQKESEIRCQA 348
             + +     +G     +EY   +SSK A C  S+ D+  +         Q +   +C  
Sbjct: 320 IDLLT-----IGLQEANSEYVKHNSSKRAKCEPSEPDLEGNFCNKRSPAAQNKRIYKCSI 374

Query: 349 CNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEP----HSKLVKLECIEDLMQ---- 400
           C+KIF S R LGGH+    A +S    K+    +  P    +SKL K E  E+ +     
Sbjct: 375 CSKIFQSHRVLGGHRMRCLASKSKSCGKSIQTNKILPDGKANSKLEKREYNENSIGQEAA 434

Query: 401 ---------RGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDIT-VEQDYSDLS 450
                    + +K++ C IC KVFA+GQALGGHKRAH   + +   +  T V+Q++SD+S
Sbjct: 435 RVSGMNCELKRSKDYECEICFKVFASGQALGGHKRAHYAGSSETGEEGTTLVQQEHSDVS 494

Query: 451 NDLDLNISNTLEE-EVHGDAGSELWVVEGKQHKHERLL 487
           +  DLN+    EE   +   G + W   G  H+HE L+
Sbjct: 495 DIFDLNLPIAPEEGGANEHVGFKPWCFRGGHHEHESLV 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819292|emb|CAN68959.1| hypothetical protein VITISV_019273 [Vitis vinifera]

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 260/517 (50%), Gaps = 63/517 (12%)

Query: 15  LRENPKKSWKFSSFNHAASASASTQESQ----CKVCGKDFESLKALYGHMRHHSRRERER 70
           LRENPKKSW+ S  N  A      QE +    CKVCGK F S +A++GHMRHHSR+E   
Sbjct: 230 LRENPKKSWRLSGSNQTAPKQEEEQEREQDHICKVCGKGFNSSRAVFGHMRHHSRQEN-- 287

Query: 71  IQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAV------KSLVLKKKRSKRKRYNFI 124
             C+ECGK   S ++LS HMR HS++ RA +ES          S   ++KRS+R +   +
Sbjct: 288 -LCRECGKGFSSLRALSGHMRCHSERFRAIDESRTSCQSQDETSCPTRRKRSQRYK---M 343

Query: 125 GSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKS 184
            S+   +     SSVT  + E+ + A+ LM+LSR V+ W +F S  E S N+SV  E KS
Sbjct: 344 TSNPSFSNFNDSSSVTLSEPELEEGALCLMLLSRAVRSWEEFYSVPESSDNNSVIAEAKS 403

Query: 185 FGKKKRLLTNRAGCFVSNGN-GCLLKKPRLEKLDSI------VLYEKEEDECHEVGSGAE 237
             +   ++ +    FVS+G     + K + + L+S       VL+EK+  E     SG  
Sbjct: 404 SHQNTPIIKDEGENFVSDGRETSKMLKEKEKMLESCVLESGNVLFEKKTTETGSSDSGFV 463

Query: 238 SDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGK 297
           S    +V+LEV  +   ++      KLDV+      D EI K+   ++  +   D E G 
Sbjct: 464 SHHETRVELEVCADDGLKK------KLDVESQYELCDSEIEKKFHSEIKIKT-TDVELGN 516

Query: 298 RIITSTSSKKVGFNACYAEYGGDSSSK-AMCNASDYDVFDD--------PQKESEIRCQA 348
             + +     +G     +EY   +SSK A C  S+ D+  +         Q +   +C  
Sbjct: 517 IDLLT-----IGLQEANSEYVKHNSSKRAKCEPSEPDLEGNFCNKRSPAAQNKRIYKCSI 571

Query: 349 CNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEP----HSKLVKLECIEDLMQ---- 400
           C+KIF S R LGGH+    A +S    K+    +  P    +SKL K E  E+ +     
Sbjct: 572 CSKIFQSHRVLGGHRMRCLASKSKSCGKSIQTNKILPDGKANSKLEKREYNENSIGQEAA 631

Query: 401 ---------RGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDIT-VEQDYSDLS 450
                    + +K++ C IC KVFA+GQALGGHKRAH   + +   +  T V+Q++SD+S
Sbjct: 632 RVSGMNCELKRSKDYECEICFKVFASGQALGGHKRAHYAGSSETGEEGTTLVQQEHSDVS 691

Query: 451 NDLDLNISNTLEE-EVHGDAGSELWVVEGKQHKHERL 486
           +  DLN+    EE   +   G + W   G  H+HE L
Sbjct: 692 DIFDLNLPIAPEEGGANEHVGFKPWCFRGGHHEHESL 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491301|ref|XP_002281438.2| PREDICTED: uncharacterized protein LOC100241686 [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 250/535 (46%), Gaps = 92/535 (17%)

Query: 10  HISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERE 69
            I Y LRENPKK+W+ +     +S   S     CK CGK F+S KAL+GHMR HS +ER 
Sbjct: 69  QIGYGLRENPKKTWRIAD----SSEDTSLLGKFCKDCGKGFQSWKALFGHMRSHSEKER- 123

Query: 70  RIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLV-LKKKRSKRKRYNFIGSSS 128
                     L ++    +     +QKL   ++S    ++   KK+  +R RY    +SS
Sbjct: 124 ----------LSNSLEEEDSWTSANQKLVMDSQSDTETAVPNRKKRSRRRTRYMATATSS 173

Query: 129 ISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKK 188
             +   + SSV+EI+QE  + AISLMMLSR   +WG   S +E S N+SV +E  S    
Sbjct: 174 SFSFANASSSVSEIEQEQEEVAISLMMLSRDSGNWGGLNSVTESSDNNSVFLEAPS---- 229

Query: 189 KRLLTNRAGCFVS-NGNGC-------LLKKPRLEKLDSIVLYEKEEDECH----EVGSGA 236
               TNR     S   NGC       L K  + EK +   L + E+ + +    E G+  
Sbjct: 230 -SFPTNRNTRIESKTTNGCDGGEVVKLKKLIKDEKFNPSAL-DSEDFQFYCKQSEFGASG 287

Query: 237 ESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSV--ASDDEIGKESSEDLMEEDGLDAE 294
            S    K+     +E           KL V+ G    +S++E+GK+    L++E+GLD  
Sbjct: 288 NSRNDSKLNKSEVLETNKSN------KLKVEDGFRFESSENELGKK----LVKENGLDQA 337

Query: 295 AGKRIITSTSSKKVGFNACY-AEYGGDSSSKAMCN-ASDYDVFDDPQKESEIRCQACNKI 352
               I  +++ +K  F   Y  E   + S K   N  +D ++  D QK S+  C  CNK 
Sbjct: 338 ELFSIKYNSNKRK--FRDFYDPELKVNCSKKTTNNDGTDSEICRDSQKRSKFECTTCNKT 395

Query: 353 FCSRRALGGHQRMHSAKRSSL----------------PVKTTMFTETEP---HSK----- 388
           F S +ALGGH+  H   +                   P  T     T+P   HS      
Sbjct: 396 FHSYQALGGHRASHKKIKGCFASRIDSSENSIDPELSPDPTADSKLTKPCNNHSPSRSPG 455

Query: 389 ----------LVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDNI-L 437
                      VK E I  L  + +K H C ICLKVF++GQALGGHKR+HLV   D    
Sbjct: 456 PIHGHTASASAVKAETI--LGSKKSKGHECPICLKVFSSGQALGGHKRSHLVGGSDTRGS 513

Query: 438 QDITVEQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS 492
           Q I + +   ++ + LDLN+    EEE     G + W V G  HKHE L+ M+++
Sbjct: 514 QTIVIPKPLPEIRDLLDLNLPAPAEEE----GGFKAWWV-GSSHKHEPLVGMISN 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423513|ref|XP_002274495.1| PREDICTED: uncharacterized protein LOC100245765 [Vitis vinifera]

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 225/495 (45%), Gaps = 74/495 (14%)

Query: 9   GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRER 68
           GH +Y LRENPKK+W+      A S S S QE+ CK CGK F+SLKAL GHM  HS +ER
Sbjct: 65  GHSAYGLRENPKKTWRL-----ANSRSGSQQENVCKECGKVFQSLKALCGHMACHSEKER 119

Query: 69  ERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRKRYNFIGSSS 128
                            LS+++  HS        + + K ++ ++KRSKR  +N   +  
Sbjct: 120 -----------------LSSNLEDHSWT------NASQKPVMDRRKRSKRTNFNRTLAVY 156

Query: 129 ISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKK 188
            S       SV++ +QE  + AI LMMLSR    WG   S    S N+SV +E KS    
Sbjct: 157 PSP------SVSDTEQEQQELAICLMMLSRDSGHWGGLNSLVYSSDNNSVVLEAKSSSID 210

Query: 189 KRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGKKVKLEV 248
            R+        VS+G+  +  K   +      + + E        SG   +  ++V+ +V
Sbjct: 211 MRICRGEDMNCVSDGDEIVETKKLGDGKSKSAVLDSEAGPFENSDSGYFMNGAQRVESDV 270

Query: 249 FIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKV 308
            ++  +   E     L++K    +  D  G ES + L     + A  GK +      K  
Sbjct: 271 SVDGVFRNVE----SLELKLEDGSGFDVFGAESGKGLKRLKCMKAGLGKDLKRPKCVKTE 326

Query: 309 GFNACYAEYGGDSSSKAMCNASDYDVF----------DDPQKESEIRCQACNKIFCSRRA 358
                  + G D  ++A   + +YD+           ++ +K S+ +C  CNK F S +A
Sbjct: 327 LGKGLLKQEGYDRVNRA---SVEYDLSKRAKNDSYSEENVRKRSKYQCLTCNKTFHSHQA 383

Query: 359 LGGHQRMH-------SAKRSSL--PVKTTMFTETEPHSKLV-----KLECIEDLMQRGNK 404
           LGGH+  H       S+   S+   ++T       PH KL      K    +DL  +  K
Sbjct: 384 LGGHRANHKRVEGCNSSNYESIENSIETDTCPGPTPHKKLARFGSGKTPIAQDLSGKAEK 443

Query: 405 E--------HTCRICLKVFATGQALGGHKRAHLVKNL-DNILQDITVEQDYSDLSNDLDL 455
           +        H C IC KVF +GQALGGHK++H V    D   + + ++Q+  ++   +DL
Sbjct: 444 KIGSRKSNGHMCPICFKVFRSGQALGGHKKSHFVGVCEDENSRTLVIKQEPLEIPGLIDL 503

Query: 456 NISNTLEEEVHGDAG 470
           N+   +EEE +   G
Sbjct: 504 NLPAPIEEEANEHVG 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547263|ref|XP_002514689.1| hypothetical protein RCOM_1470470 [Ricinus communis] gi|223546293|gb|EEF47795.1| hypothetical protein RCOM_1470470 [Ricinus communis]

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 241/521 (46%), Gaps = 85/521 (16%)

Query: 13  YDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQ 72
           Y LRENPKK+W+  + +H +S   S  +  CK CG+ F+S KAL+GHM+ H   E+E+++
Sbjct: 81  YGLRENPKKTWRIVA-DHHSSEDTSLVDKSCKECGRVFQSWKALFGHMKCHPSLEKEKVK 139

Query: 73  CKECGKALLSAKSLSNHMRVHSQKL----RACNESGAVKSLVLKKKRSKRKRYNFIG--- 125
                 +L   +  S     ++QKL    ++ NE+ A        ++  ++R  ++G   
Sbjct: 140 ASNINNSLEEEQQDS-WTSANNQKLVMDSQSDNETAAPNR-----RKRSKRRTRYMGGTA 193

Query: 126 -SSSISTLN--ESLSSVTEID-QEVVQTAISLMMLSRGVQDWGK-FCSSSEFSCNDSVTI 180
            SSS+S  N   + SSV+EID QE  + A+ LMMLSR V  WG    S +E S N SV +
Sbjct: 194 NSSSLSFANNINASSSVSEIDQQEQEEVAMCLMMLSRDVGQWGSGLNSVAESSDNSSVFL 253

Query: 181 EVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDE 240
           E         L+++R     S  NG                      E  +V +  +   
Sbjct: 254 E------NNNLVSSRNEVKASVCNGT---------------------ETLKVKNFGDKKN 286

Query: 241 GKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRII 300
           GK    ++ +E    + EF +  +  K      +D++ K  ++D    +    E GK + 
Sbjct: 287 GKLEDDDLRVES--RKSEFSVSGISRK--GFTKNDKVKKSPADDERAAENSAVELGKNLS 342

Query: 301 TSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALG 360
             T       N+   +Y  DS    +   SDY    +  + S   C  CNK+F S +ALG
Sbjct: 343 KETDMISSKRNSNKRKY-DDSFHPEL--KSDY--LKNSDRSSRFECTTCNKVFHSYQALG 397

Query: 361 GHQRMHSAKRSSLPVKT-----TMFTETEP----HSKLV------KLECIEDLMQRGNKE 405
           GH+  H   +     ++     ++ TE  P     SKL+      ++   +  ++R NK 
Sbjct: 398 GHRASHKKTKGCFASRSDSNENSIETELSPDPTADSKLIIKSIKNEISVDQLAIERDNKA 457

Query: 406 -----------HTCRICLKVFATGQALGGHKRAHLVKNLDNILQD--ITVEQDYSDLSND 452
                      H C +C KVF +GQALGGHKR+HL+   D    D  I+V++       D
Sbjct: 458 ETSYGAKKSKGHECPVCFKVFPSGQALGGHKRSHLLAGTDQGKNDRSISVQESMPPPIRD 517

Query: 453 -LDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLLSMMAS 492
            LDLN+    EEE +G  G   W +    HKHE+L+ ++++
Sbjct: 518 FLDLNLPAPAEEESNGLVGFNPWWITS-NHKHEQLVGLISN 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098958|ref|XP_002311333.1| predicted protein [Populus trichocarpa] gi|222851153|gb|EEE88700.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 229/497 (46%), Gaps = 94/497 (18%)

Query: 9   GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRER 68
           G   Y LRENPKK+ +F +    +S + S  E  CK CGK F+SLKAL GHM  HS    
Sbjct: 65  GQFGYALRENPKKTTRFVA---DSSNTTSLPEQLCKECGKGFQSLKALCGHMACHS---- 117

Query: 69  ERIQCKECGKALLSAKSLSNHMRVHSQKLRAC---NESGAVKSLVLKKKRSKRKRYNFIG 125
                          K+        + KL+      +S +  +  ++ +RSKR RY  I 
Sbjct: 118 ---------------KNFFQDQSGATMKLKGIIMDKQSDSETTDPIEPRRSKRMRYKAID 162

Query: 126 --SSSISTLNE-SLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEV 182
             +SS+S  N  SLSS ++I+QE  + A SLMMLS+     G F S ++ S N+SV +E 
Sbjct: 163 VYTSSLSLTNTASLSSTSDIEQEQEEVAKSLMMLSKDSGFKGCFSSVADSSDNNSVVLEG 222

Query: 183 KSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGK 242
           KS   K R+  N    FVS+G    ++   ++K     +   E D+     SG   +  K
Sbjct: 223 KSSYMKMRINVNDGINFVSSG----IESLEMKKATQRGVNSAENDQSENSDSGYFRNGPK 278

Query: 243 KVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITS 302
           KV+ +V +  F   GEF+  ++D    SV S D             D LDAE+GKR+  S
Sbjct: 279 KVESDVSVHGFARNGEFKKQEVD----SVFSYD-------------DELDAESGKRLSMS 321

Query: 303 TSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRR----- 357
              +         + G D     + N  D  + D    +   + ++C  +  S R     
Sbjct: 322 RHIR--------TQLGKDFIVDDVYNQGDRALMD---SQKGCKNESCEYLSSSVRNRGSK 370

Query: 358 --ALGG----HQRMHSAKRSSLPV-KTTMFTETEPH-----SKLVKLECIEDLMQRGN-- 403
             +LGG    H R++    S     + ++ T+  P+     SK+++    +  +++ +  
Sbjct: 371 CVSLGGRRTSHNRINGCSDSIYESGENSVDTDYVPNPIANSSKMIQSRSGKTPIEKSSSG 430

Query: 404 -----------KEHTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLSND 452
                      K H C  C KVF +GQALGGHKR+H +      ++ + +EQD  ++S  
Sbjct: 431 KAEKKLGLKIEKVHECPFCPKVFRSGQALGGHKRSHFIGAAR--VRPVVIEQDVPEISTR 488

Query: 453 --LDLNISNTLEEEVHG 467
             +DLN+  ++EEE  G
Sbjct: 489 GLIDLNLPVSMEEESDG 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112130|ref|XP_002316093.1| predicted protein [Populus trichocarpa] gi|222865133|gb|EEF02264.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 217/495 (43%), Gaps = 102/495 (20%)

Query: 9   GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRER 68
           G   Y LRENPKK  +F +    +S + S  E  CK CGK F+SLKAL GHM  HS+   
Sbjct: 65  GQSGYVLRENPKKKSRFVA---DSSNTTSLPEKVCKECGKGFQSLKALCGHMACHSK--- 118

Query: 69  ERIQCKECGKALLSAKSLSNHMRVHS---QKLRAC---NESGAVKSLVLKKKRSKRKRYN 122
                              N+ +  S   +KL+     N+S +  +   K +RSKR RY 
Sbjct: 119 -------------------NYFQDQSGTTEKLKEIVSDNQSDSETTDPRKPRRSKRMRYK 159

Query: 123 FIGSSSISTLNESLSSVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIEV 182
                +I     SLSS ++I+QE  + A  LMMLS+     G F S ++ S N+SV +E 
Sbjct: 160 -----TIDVFTTSLSSTSDIEQEQEEVAKCLMMLSKDSGFKGCFSSLADSSDNNSVVLEG 214

Query: 183 KSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDEGK 242
           KS   K R+  N A  FVS+G   L  K  +++     +   E D+     SG      K
Sbjct: 215 KSSSTKTRINVNNAVNFVSSGIESLEVKKSMQR----GVISTENDQSENSDSGYFRKGPK 270

Query: 243 KVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITS 302
           KV+ +V +  F    E +  K+           E G  SS D    D +DAE+GKR+   
Sbjct: 271 KVESDVSVHGFARNDEIKKYKV-----------EFG--SSYD----DAIDAESGKRLSR- 312

Query: 303 TSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRR----- 357
                  F     + G D           YD  D    +S+ RC+  +  F S R     
Sbjct: 313 -------FRRVRTQLGKD-----FIEEDVYDQADRASMDSQKRCKNESYEFLSSRRGKCV 360

Query: 358 ALGGHQRMHSA---------KRSSLPVKTTMFTETEPH-SKLVKLECIEDLMQR---GNK 404
            LGG +  H+          +     V T       P+ S++++    +  +++   GN 
Sbjct: 361 PLGGRRASHNKTNGCSDSIYESGENSVDTDYVPNPIPNSSRMIQSRSGKTPIEQNSSGNA 420

Query: 405 E----------HTCRICLKVFATGQALGGHKRAHLVKNLDNILQDITVEQDYSDLS--ND 452
           E          H C  C KVF +GQALGGHKR+H      +  + + ++QD  ++S    
Sbjct: 421 EKNLGLKKGKLHECPFCPKVFRSGQALGGHKRSHFAGAARD--RTVVIKQDVPEISMRGL 478

Query: 453 LDLNISNTLEEEVHG 467
           +DLN+  ++EEE  G
Sbjct: 479 IDLNLPVSVEEEAGG 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2197890	455	AT1G26610 "AT1G26610" [Arabido	0.357	0.386	0.263	1.8e-17
TAIR|locus:2103311	288	AT3G60580 "AT3G60580" [Arabido	0.184	0.315	0.411	5.6e-13
TAIR|locus:2059672	270	DAZ1 "AT2G17180" [Arabidopsis	0.266	0.485	0.302	1.3e-12
UNIPROTKB|Q3SYV7	487	ZNF345 "Zinc finger protein 34	0.123	0.125	0.406	7.8e-12
TAIR|locus:2091201	273	ZF2 "AT3G19580" [Arabidopsis t	0.239	0.432	0.360	1.8e-11
TAIR|locus:2055583	314	AT2G45120 "AT2G45120" [Arabido	0.174	0.273	0.366	6.3e-11
UNIPROTKB|B7Z6K7	855	ZNF814 "Putative uncharacteriz	0.191	0.109	0.298	9.8e-11
TAIR|locus:2093807	650	AT3G29340 "AT3G29340" [Arabido	0.166	0.126	0.340	9.6e-05
UNIPROTKB|F1MJ88	1051	ZNF345 "Zinc finger protein 34	0.191	0.089	0.319	5.5e-10
UNIPROTKB|Q8IYI8	595	ZNF440 "Zinc finger protein 44	0.199	0.164	0.297	5.8e-10

TAIR|locus:2197890 AT1G26610 "AT1G26610" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
 Identities = 52/197 (26%), Positives = 85/197 (43%)

Query:    72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESGAXXXXXXXXXXXXXXRY--------NF 123
             +C+ECGK  +S+K+L  HM  HS++ +   +S +              R          F
Sbjct:    94 RCRECGKGFVSSKALCGHMACHSEREKIVMDSQSDTEASSSPIRRRSKRVVVKPHHKAAF 153

Query:   124 I--GXXXXXXXXXXXXXVTEIDQEVVQTAISLMMLSRGVQDWGKFCSSSEFSCNDSVTIE 181
             +  G              +EI+ E  + A SLMMLSR         S +E S N+SV +E
Sbjct:   154 VVGGNGIMNQSISASSDASEIEPEQEEMARSLMMLSRDSSFKKGHNSLAESSDNNSVILE 213

Query:   182 VKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESD-- 239
              KS   ++  + N     V N    L KK +L  +D+ +   +E  + H     ++S   
Sbjct:   214 TKSSSGEQVKMFN-----VKNVEE-LCKKNKLV-VDNQMRSGEENGDVHYDSDNSDSGYF 266

Query:   240 -EG-KKVKLEVFIEKFY 254
               G KK+  +V ++ F+
Sbjct:   267 RNGPKKLDSDVSVDGFF 283

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2103311 AT3G60580 "AT3G60580" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
 Identities = 42/102 (41%), Positives = 57/102 (55%)

Query:   332 YDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVK 391
             Y+  +    +   +C+ C K+F S +ALGGH+  H   R S   KT   +ETE  + +V 
Sbjct:   161 YNKINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNRVSNN-KTEQRSETEYDNVVVV 219

Query:   392 LECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNL 433
              + I          H C ICL+VFA+GQALGGHKR+H V NL
Sbjct:   220 AKRI----------HECPICLRVFASGQALGGHKRSHGVGNL 251

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2059672 DAZ1 "AT2G17180" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 42/139 (30%), Positives = 63/139 (45%)

Query:   302 STSSKKVGFNACYAEYGGDSSSKAMCNASDYDVF---DDPQKESEIR----CQACNKIFC 354
             S   +++  NA  +    D S +    AS   +    D P + SE+     C  C K+F 
Sbjct:    99 SNFKRRINSNAASSSSSWDPSEEEHNIASCLLMMANGDVPTRSSEVEERFECDGCKKVFG 158

Query:   355 SRRALGGHQRMHSAKRSSLPVKT-TMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLK 413
             S +ALGGH+  H   +     K  T      P  ++V  +  + +       H C IC +
Sbjct:   159 SHQALGGHRATHKDVKGCFANKNITEDPPPPPPQEIVDQDKGKSVKLVSGMNHRCNICSR 218

Query:   414 VFATGQALGGHKRAHLVKN 432
             VF++GQALGGH R H  K+
Sbjct:   219 VFSSGQALGGHMRCHWEKD 237

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

UNIPROTKB|Q3SYV7 ZNF345 "Zinc finger protein 345" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
 Identities = 26/64 (40%), Positives = 34/64 (53%)

Query:    42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS-QKLRAC 100
             +CK CGKDF  +  L  H            +CKECGKA  S  +L+ H R+H+ +K   C
Sbjct:    63 ECKECGKDFSFVSVLIRHQRIHTGEKPY--ECKECGKAFGSGANLAYHQRIHTGEKPYEC 120

Query:   101 NESG 104
             NE G
Sbjct:   121 NECG 124

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2091201 ZF2 "AT3G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 44/122 (36%), Positives = 57/122 (46%)

Query:   313 CYAEYGGDSSSKAMCNASDYDVFDDPQ-KESEIRCQACNKIFCSRRALGGHQRMHSAKRS 371
             C      D  S+   +     +   P+ K    +C  C K F S +ALGGH+  H  K  
Sbjct:    74 CLLMLAKDQPSQTRFHQQSQSLTPPPESKNLPYKCNVCEKAFPSYQALGGHKASHRIKPP 133

Query:   372 SLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVK 431
             ++ + TT    T P   +V  E  +  +    K H C IC KVF TGQALGGHKR H   
Sbjct:   134 TV-ISTTADDSTAPTISIVAGE--KHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEG 190

Query:   432 NL 433
             NL
Sbjct:   191 NL 192

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IEP;RCA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055583 AT2G45120 "AT2G45120" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
 Identities = 37/101 (36%), Positives = 57/101 (56%)

Query:   330 SDYDVFDDPQKESE--IRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHS 387
             +D+D  D    +S    +C+ C K+F S +ALGGH+  H   ++ +       T+TE   
Sbjct:   178 TDHDSEDYKSSKSRGRFKCETCGKVFKSYQALGGHRASHKKNKACM-------TKTEQ-- 228

Query:   388 KLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAH 428
               V+ E +  + ++  K H C IC +VF +GQALGGHKR+H
Sbjct:   229 --VETEYVLGVKEK--KVHECPICFRVFTSGQALGGHKRSH 265

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|B7Z6K7 ZNF814 "Putative uncharacterized zinc finger protein 814" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
 Identities = 29/97 (29%), Positives = 40/97 (41%)

Query:     9 GHISYDLRENPKKSWKFSSFNHXXXXXXXTQESQCKVCGKDFESLKALYGHMXXXXXXXX 68
             G   Y+  E  K   K++SF++        +  +C  CGK F    +   H         
Sbjct:   320 GKRPYECGECGKSFSKYASFSNHQRVHTEKKHYECGECGKSFSKYVSFSNHQRVHTGKRP 379

Query:    69 XXIQCKECGKALLSAKSLSNHMRVHSQKLR-ACNESG 104
                +C ECGK+     S SNH RVH+ K    C E G
Sbjct:   380 Y--ECGECGKSFSKYASFSNHQRVHTDKKHYECGECG 414

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2093807 AT3G29340 "AT3G29340" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 31/91 (34%), Positives = 47/91 (51%)

Query:   339 QKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPH-SKLVKLECIED 397
             Q +S  +C+ C K F   +ALGGHQR+H   +  L  +   F+E  P  SKL K      
Sbjct:    38 QSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQE--FSEVYPRKSKLQKRP---- 91

Query:   398 LMQRGNKEHTCRICLKVFATGQALGGHKRAH 428
               +  +  + C++C K+F   + LGGH + H
Sbjct:    92 --ESSSSCYECKVCGKIFGCYRGLGGHTKLH 120

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|F1MJ88 ZNF345 "Zinc finger protein 345" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 31/97 (31%), Positives = 41/97 (42%)

Query:     9 GHISYDLRENPKKSWKFSSFNHXXXXXXXTQESQCKVCGKDFESLKALYGHMXXXXXXXX 68
             G   YD +E  K     SS           +  +CK C K F  +  L  H         
Sbjct:   329 GEKPYDCKECGKAFRLHSSLIQHQRIHSGEKPYKCKECKKAFSFVSVLIRHQRIHTGEKP 388

Query:    69 XXIQCKECGKALLSAKSLSNHMRVHS-QKLRACNESG 104
                +CKECGKA  S  +L+ H R+H+ +K   CNE G
Sbjct:   389 Y--ECKECGKAFGSGANLAYHQRIHTGEKPYECNECG 423

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8IYI8 ZNF440 "Zinc finger protein 440" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 33/111 (29%), Positives = 51/111 (45%)

Query:     5 KGDDGHISYDLRE---------NPKKSWKFS-SFNHXXXXXXXTQESQCKVCGKDFESLK 54
             +GD GH +Y+ +E          PKK++++  SF          + + CKVCGK F S  
Sbjct:   126 RGDIGHKAYEYQEYGPKPCKCQQPKKAFRYRPSFRTQERDHTGEKPNACKVCGKTFISHS 185

Query:    55 ALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS-QKLRACNESG 104
             ++  HM           +CK CGKA    +    H R+H+ +K   C + G
Sbjct:   186 SVRRHMVMHSGDGPY--KCKFCGKAFHCLRLYLIHERIHTGEKPCECKQCG 234

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00170472 hypothetical protein (549 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	1e-04
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	1e-04

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 42 QCKVCGKDFESLKALYGHMRHH 63
           C VCGK F SL+AL GH + H
Sbjct: 3  TCGVCGKTFSSLQALGGHKKSH 24

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 406 HTCRICLKVFATGQALGGHKRAH 428
           HTC +C K F++ QALGGHK++H
Sbjct: 2   HTCGVCGKTFSSLQALGGHKKSH 24

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.97
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.96
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.94
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.93
KOG3608	467	consensus Zn finger proteins [General function pre	99.91
KOG3608	467	consensus Zn finger proteins [General function pre	99.83
KOG3576	267	consensus Ovo and related transcription factors [T	99.77
KOG3576	267	consensus Ovo and related transcription factors [T	99.62
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.61
PHA00733	128	hypothetical protein	99.26
PHA02768	55	hypothetical protein; Provisional	99.18
PHA02768	55	hypothetical protein; Provisional	99.13
PLN03086	567	PRLI-interacting factor K; Provisional	99.12
PLN03086	567	PRLI-interacting factor K; Provisional	99.12
PHA00733	128	hypothetical protein	99.1
KOG3993	500	consensus Transcription factor (contains Zn finger	98.96
KOG3993	500	consensus Transcription factor (contains Zn finger	98.84
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.82
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.82
PHA00732	79	hypothetical protein	98.66
PHA00732	79	hypothetical protein	98.64
PHA00616	44	hypothetical protein	98.6
PHA00616	44	hypothetical protein	98.59
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.39
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.23
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.11
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.99
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.89
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.85
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.78
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.76
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.71
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.68
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.67
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.51
smart00355	26	ZnF_C2H2 zinc finger.	97.39
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.31
smart00355	26	ZnF_C2H2 zinc finger.	97.14
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.07
COG5048	467	FOG: Zn-finger [General function prediction only]	97.07
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.93
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.82
PRK04860	160	hypothetical protein; Provisional	96.81
PRK04860	160	hypothetical protein; Provisional	96.81
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.74
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.74
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.61
KOG1146	1406	consensus Homeobox protein [General function predi	96.48
COG5048	467	FOG: Zn-finger [General function prediction only]	95.95
KOG1146	1406	consensus Homeobox protein [General function predi	95.7
KOG2893	341	consensus Zn finger protein [General function pred	95.44
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.27
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.77
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.28
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.67
KOG2893	341	consensus Zn finger protein [General function pred	92.15
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	91.51
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.51
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	90.3
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.26
COG4049	65	Uncharacterized protein containing archaeal-type C	89.24
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.95
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	88.85
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.83
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.54
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	87.98
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.66
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.26
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	86.48
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	86.25
COG1198	730	PriA Primosomal protein N' (replication factor Y)	86.24
COG4049	65	Uncharacterized protein containing archaeal-type C	85.88
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.38
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.25
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	84.21
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	83.6
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	82.27
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	82.25
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	81.8
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	81.62
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	81.57
smart00531	147	TFIIE Transcription initiation factor IIE.	81.28
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	81.11
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	80.28
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	80.22

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.97  E-value=1.2e-31  Score=258.33  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=51.5

Q ss_pred             cccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           13 YDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .+|.+|.|+|...+.|+.|.|.|++++||+|.+||.+|.++.+|+.|...|+..
T Consensus       354 hkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~  407 (958)
T KOG1074|consen  354 HKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREK  407 (958)
T ss_pred             chhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeecccc
Confidence            679999999999999999999999999999999999999999999999888765

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.96  E-value=6e-31  Score=223.87  Aligned_cols=82  Identities=32%  Similarity=0.485  Sum_probs=63.2

Q ss_pred             CCCccccCCCCcccccccchhhhhhccCC---CCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhh
Q 039095            9 GHISYDLRENPKKSWKFSSFNHAASASAS---TQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKS   85 (492)
Q Consensus         9 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~---~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~   85 (492)
                      ....|+|++|+|.|.+.+.|.+|.+.|-.   .+.|.|++|+|+|.+-..|++|+|+|+    .+++|.+|||.|+..+-
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~----l~c~C~iCGKaFSRPWL  202 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT----LPCECGICGKAFSRPWL  202 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC----CCcccccccccccchHH
Confidence            45558888888888888888888887743   456788888888888888888888887    47888888888888888


Q ss_pred             Hhhhhhhcc
Q 039095           86 LSNHMRVHS   94 (492)
Q Consensus        86 L~~H~~~H~   94 (492)
                      |+-|+|+|+
T Consensus       203 LQGHiRTHT  211 (279)
T KOG2462|consen  203 LQGHIRTHT  211 (279)
T ss_pred             hhccccccc
Confidence            888888774

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.94  E-value=4.2e-27  Score=223.08  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=90.5

Q ss_pred             cccCCCCcccccccchhhhhh-cc-CCCCccccccccccccChhHHHhhhhccCccc-----------ccccccccchhh
Q 039095           13 YDLRENPKKSWKFSSFNHAAS-AS-ASTQESQCKVCGKDFESLKALYGHMRHHSRRE-----------RERIQCKECGKA   79 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~-~H-~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~-----------~k~y~C~~C~k~   79 (492)
                      ..|++|++.|.....|+.|+. .| ..+..|.|.+|.++|..+..|.+||.+|..-.           -|.|+|+.|||+
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            689999999999999988865 34 34556999999999999999999999986542           167999999999


Q ss_pred             hcChhhHhhhhhhccc-CcccccccCchhhhHHhhhhhc
Q 039095           80 LLSAKSLSNHMRVHSQ-KLRACNESGAVKSLVLKKKRSK  117 (492)
Q Consensus        80 F~~~~~L~~H~~~H~~-k~~~C~~C~~~f~~~~~~~~h~  117 (492)
                      |..+..|+.|+|+|.| |||.|+.|++.|+..-...-|+
T Consensus       291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence            9999999999999997 9999999999999665555554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.94  E-value=2.8e-27  Score=201.51  Aligned_cols=106  Identities=24%  Similarity=0.449  Sum_probs=101.9

Q ss_pred             CCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhh
Q 039095            9 GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSN   88 (492)
Q Consensus         9 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~   88 (492)
                      ..+.|.|++|+|+|.+...|+.|+++|+  .++.|.+|||.|.+.+-|+-|+|+||||  |||.|+.|+|+|.+++||+.
T Consensus       158 s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGE--KPF~C~hC~kAFADRSNLRA  233 (279)
T KOG2462|consen  158 SKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGE--KPFSCPHCGKAFADRSNLRA  233 (279)
T ss_pred             ccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCC--CCccCCcccchhcchHHHHH
Confidence            3677999999999999999999999997  7999999999999999999999999999  99999999999999999999


Q ss_pred             hhhhccc-CcccccccCchhhhHHhhhhhcc
Q 039095           89 HMRVHSQ-KLRACNESGAVKSLVLKKKRSKR  118 (492)
Q Consensus        89 H~~~H~~-k~~~C~~C~~~f~~~~~~~~h~~  118 (492)
                      ||++|.+ |+|+|..|++.|+..+.|.+|..
T Consensus       234 HmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  234 HMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             HHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            9999997 99999999999999999999975

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.93  E-value=1.4e-26  Score=223.45  Aligned_cols=93  Identities=23%  Similarity=0.406  Sum_probs=80.0

Q ss_pred             cccccCCcccccccCCCCCcc-ccCCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhh
Q 039095          314 YAEYGGDSSSKAMCNASDYDV-FDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKL  392 (492)
Q Consensus       314 ~~~~~C~~C~~~f~~~~~l~~-h~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~  392 (492)
                      ..+.+|-+|.+....++.|+. ++.|+|++||+|++||+.|.++.+|+.||.+|...                       
T Consensus       603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~-----------------------  659 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK-----------------------  659 (958)
T ss_pred             CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccC-----------------------
Confidence            367889999999999999998 45899999999999999999999999999999732                       


Q ss_pred             hhhhccccCCCCcccCC---ccccccCCchhhhhhhhhcccCCCCCC
Q 039095          393 ECIEDLMQRGNKEHTCR---ICLKVFATGQALGGHKRAHLVKNLDNI  436 (492)
Q Consensus       393 ~~~h~~~H~~~kpf~C~---~C~k~F~~~~~L~~H~r~H~~~~~~~~  436 (492)
                             +.-.-+|.|+   ||.+.|+..-.|..|+|+|.+...++.
T Consensus       660 -------p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g  699 (958)
T KOG1074|consen  660 -------PPARVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNG  699 (958)
T ss_pred             -------ccccccccCCchhhhcccccccccccceEEeecCCCCCCC
Confidence                   2233679999   999999999999999999997776655

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.91  E-value=1.5e-25  Score=195.54  Aligned_cols=223  Identities=17%  Similarity=0.261  Sum_probs=183.7

Q ss_pred             ccc--CCCCcccccccchhhhhhccCC------------CCc-ccc--ccccccccChhHHHhhhhccCccccccccccc
Q 039095           13 YDL--RENPKKSWKFSSFNHAASASAS------------TQE-SQC--KVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        13 ~~C--~~C~k~f~~~~~l~~H~~~H~~------------~~~-~~C--~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      |.|  ..|+..|.+...|..|.-.|..            ++| +.|  .-|.+.|.+++.|.+|+|+|+++  |...|+.
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~e--KvvACp~  212 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNE--KVVACPH  212 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCC--eEEecch
Confidence            556  5899999999999988887742            223 566  46999999999999999999999  9999999


Q ss_pred             chhhhcChhhHhhhhhhcc---cCcccccccCchhhhHHhhhhhcccccccCCCCCcccccccCccccccchhhhhhhhh
Q 039095           76 CGKALLSAKSLSNHMRVHS---QKLRACNESGAVKSLVLKKKRSKRKRYNFIGSSSISTLNESLSSVTEIDQEVVQTAIS  152 (492)
Q Consensus        76 C~k~F~~~~~L~~H~~~H~---~k~~~C~~C~~~f~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (492)
                      ||..|+++..|-.|++.-+   ..+|.|..|.+.|++...|..|+..|.                               
T Consensus       213 Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-------------------------------  261 (467)
T KOG3608|consen  213 CGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-------------------------------  261 (467)
T ss_pred             HHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh-------------------------------
Confidence            9999999999999998766   378999999999999988888887552                               


Q ss_pred             hhcccCCCCCCCccccCCcccccCceeeeecccccccceeeccCCcccccCCccccCcccccccccccccccCccccccc
Q 039095          153 LMMLSRGVQDWGKFCSSSEFSCNDSVTIEVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEV  232 (492)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c  232 (492)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (467)
T KOG3608|consen  262 --------------------------------------------------------------------------------  261 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccceeeeeeeccccccccCccCCcccCCCCCccchhhhccccchhhhhhhcchhhcccceeeecCCcccccCC
Q 039095          233 GSGAESDEGKKVKLEVFIEKFYEEGEFEMPKLDVKPGSVASDDEIGKESSEDLMEEDGLDAEAGKRIITSTSSKKVGFNA  312 (492)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~  312 (492)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (467)
T KOG3608|consen  262 --------------------------------------------------------------------------------  261 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCcccccccCCCCCcccc--CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCc--CCCCCCCCcccc
Q 039095          313 CYAEYGGDSSSKAMCNASDYDVFD--DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVK--TTMFTETEPHSK  388 (492)
Q Consensus       313 ~~~~~~C~~C~~~f~~~~~l~~h~--~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~~~~~~~~~  388 (492)
                        .-|+|+.|+.+....+.|..|.  .|...|||+|+.|.+.|.+.+.|.+|..+|+ +..|.|+.  |.++++....+.
T Consensus       262 --n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~  338 (467)
T KOG3608|consen  262 --NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMR  338 (467)
T ss_pred             --hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHH
Confidence              3488999999999999998866  7888999999999999999999999999998 77899999  777765444332


Q ss_pred             hhhhhhhhccc-cCC--CCcccCCccccccCCchhhhhhhhhcccCCCCCCc
Q 039095          389 LVKLECIEDLM-QRG--NKEHTCRICLKVFATGQALGGHKRAHLVKNLDNIL  437 (492)
Q Consensus       389 ~~~~~~~h~~~-H~~--~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  437 (492)
                      .      |++. |-|  +-+|+|..|++.|++..+|.+|++.-++=+.+++-
T Consensus       339 ~------H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh  384 (467)
T KOG3608|consen  339 R------HFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGH  384 (467)
T ss_pred             H------HHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCC
Confidence            2      3343 323  46799999999999999999997765566655543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.83  E-value=7.6e-22  Score=172.47  Aligned_cols=109  Identities=18%  Similarity=0.254  Sum_probs=98.1

Q ss_pred             Ccccc--CCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhh
Q 039095           11 ISYDL--RENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSN   88 (492)
Q Consensus        11 ~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~   88 (492)
                      ..+-|  .-|-+.|.+++.|++|++.|++++.-.|+.||.-|.++..|-.|+|.-+.-...+|+|..|.|.|.+...|+.
T Consensus       176 pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~  255 (467)
T KOG3608|consen  176 PVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKS  255 (467)
T ss_pred             ceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHH
Confidence            34556  4699999999999999999999999999999999999999999988776655479999999999999999999


Q ss_pred             hhhhcccCcccccccCchhhhHHhhhhhcccc
Q 039095           89 HMRVHSQKLRACNESGAVKSLVLKKKRSKRKR  120 (492)
Q Consensus        89 H~~~H~~k~~~C~~C~~~f~~~~~~~~h~~~~  120 (492)
                      |++.|. .-|+|+.|+......+.|.+|++.+
T Consensus       256 Hv~rHv-n~ykCplCdmtc~~~ssL~~H~r~r  286 (467)
T KOG3608|consen  256 HVVRHV-NCYKCPLCDMTCSSASSLTTHIRYR  286 (467)
T ss_pred             HHHHhh-hcccccccccCCCChHHHHHHHHhh
Confidence            999885 5699999999999999999998765

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.77  E-value=4.9e-20  Score=148.69  Aligned_cols=111  Identities=24%  Similarity=0.340  Sum_probs=99.7

Q ss_pred             CCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhh
Q 039095            9 GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSN   88 (492)
Q Consensus         9 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~   88 (492)
                      +...|.|.+|+|.|.-...|.+|+.-|...+.|-|..|||.|+...+|++|+|+|+|.  +||+|..|+++|+++-.|..
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgv--rpykc~~c~kaftqrcsles  191 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV--RPYKCSLCEKAFTQRCSLES  191 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCc--cccchhhhhHHHHhhccHHH
Confidence            4667999999999999999999999999999999999999999999999999999999  99999999999999999999


Q ss_pred             hhh-hcc-----------cCcccccccCchhhhHHhhhhhccccc
Q 039095           89 HMR-VHS-----------QKLRACNESGAVKSLVLKKKRSKRKRY  121 (492)
Q Consensus        89 H~~-~H~-----------~k~~~C~~C~~~f~~~~~~~~h~~~~~  121 (492)
                      |++ +|.           .|.|.|+.||.+-.....+..|...++
T Consensus       192 hl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  192 HLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             HHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            986 453           267999999977666666777776654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.62  E-value=4.7e-17  Score=131.61  Aligned_cols=83  Identities=25%  Similarity=0.450  Sum_probs=76.1

Q ss_pred             CCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-CcccccccCchhhhHHhhh
Q 039095           36 ASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNESGAVKSLVLKKK  114 (492)
Q Consensus        36 ~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C~~~f~~~~~~~  114 (492)
                      .+...|.|.+|+|.|.-+-.|++||+.|...  +.|-|..||+.|.....|++|+|+|+| +||+|..|++.|+..-.|.
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~v--kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsle  190 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDV--KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLE  190 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHH--HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHH
Confidence            4456799999999999999999999999999  999999999999999999999999998 9999999999999877777


Q ss_pred             hhcccc
Q 039095          115 RSKRKR  120 (492)
Q Consensus       115 ~h~~~~  120 (492)
                      -|.++.
T Consensus       191 shl~kv  196 (267)
T KOG3576|consen  191 SHLKKV  196 (267)
T ss_pred             HHHHHH
Confidence            776543

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.61  E-value=7.5e-17  Score=154.10  Aligned_cols=80  Identities=29%  Similarity=0.393  Sum_probs=70.9

Q ss_pred             CCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhh
Q 039095           10 HISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH   89 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H   89 (492)
                      +-.|.|+.|+|+|...++|.+|..-|+|.+||+|.+|.|.|+.+.+|..|+|.|.||  |||+|..|+|+|+..+..-.|
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGE--KPfQCdKClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGE--KPFQCDKCLKRFSHSGSYSQH  969 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCC--CcchhhhhhhhcccccchHhh
Confidence            456889999999999999999988899999999999999999999999999999998  899999999999988888888


Q ss_pred             hh
Q 039095           90 MR   91 (492)
Q Consensus        90 ~~   91 (492)
                      |.
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            86

>PHA00733 hypothetical protein

Probab=99.26  E-value=1.8e-12  Score=102.41  Aligned_cols=79  Identities=18%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             CCccccCCCCcccccccchhhh--h---hccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChh
Q 039095           10 HISYDLRENPKKSWKFSSFNHA--A---SASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAK   84 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H--~---~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~   84 (492)
                      .+++.|.+|.+.|.....|..+  +   ..+.+.+||.|+.|++.|.+...|..|+++|  +  .+|.|++|++.|....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~--~~~~C~~CgK~F~~~~  113 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--E--HSKVCPVCGKEFRNTD  113 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--C--cCccCCCCCCccCCHH
Confidence            3445555555555555444333  1   1122345555555555555555555555554  1  3455555555555555


Q ss_pred             hHhhhhhh
Q 039095           85 SLSNHMRV   92 (492)
Q Consensus        85 ~L~~H~~~   92 (492)
                      .|..|+..
T Consensus       114 sL~~H~~~  121 (128)
T PHA00733        114 STLDHVCK  121 (128)
T ss_pred             HHHHHHHH
Confidence            55555543

>PHA02768 hypothetical protein; Provisional

Probab=99.18  E-value=6.3e-12  Score=80.45  Aligned_cols=44  Identities=18%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             ceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhh
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALG  422 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~  422 (492)
                      -|.|+.||+.|+..++|..|+++|+                                    +||+|..|++.|.+++.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~------------------------------------k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN------------------------------------TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC------------------------------------CcccCCcccceecccceeE
Confidence            3899999999999999999999998                                    6888888989888887764

>PHA02768 hypothetical protein; Provisional

Probab=99.13  E-value=1.3e-11  Score=79.01  Aligned_cols=44  Identities=20%  Similarity=0.539  Sum_probs=33.2

Q ss_pred             ccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHh
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLS   87 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~   87 (492)
                      .|.|+.||+.|...++|.+||++|+    ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN----TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC----CcccCCcccceecccceeE
Confidence            4778888888888888888888877    4777888888777776653

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.12  E-value=4.6e-11  Score=116.18  Aligned_cols=94  Identities=14%  Similarity=0.281  Sum_probs=80.6

Q ss_pred             CCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhc------
Q 039095            8 DGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALL------   81 (492)
Q Consensus         8 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~------   81 (492)
                      +....|.|+.|++.|. ...|..|+..|.  .||.|+ |++.| .+..|..|+++|.++  +++.|++|++.|.      
T Consensus       449 el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~--Kpi~C~fC~~~v~~g~~~~  521 (567)
T PLN03086        449 EAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPL--RLITCRFCGDMVQAGGSAM  521 (567)
T ss_pred             ccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCC--CceeCCCCCCccccCcccc
Confidence            3456689999999996 577999999874  899999 99765 678999999999999  9999999999994      


Q ss_pred             ----ChhhHhhhhhhcccCcccccccCchhh
Q 039095           82 ----SAKSLSNHMRVHSQKLRACNESGAVKS  108 (492)
Q Consensus        82 ----~~~~L~~H~~~H~~k~~~C~~C~~~f~  108 (492)
                          ....|..|+.++..+++.|..||+.+.
T Consensus       522 d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        522 DVRDRLRGMSEHESICGSRTAPCDSCGRSVM  552 (567)
T ss_pred             chhhhhhhHHHHHHhcCCcceEccccCCeee
Confidence                245899999998669999999998766

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.12  E-value=6.7e-11  Score=115.07  Aligned_cols=87  Identities=17%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             cccCCCCcccccccchhhhhhccCCCCcccccc--ccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhh
Q 039095           13 YDLRENPKKSWKFSSFNHAASASASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHM   90 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~   90 (492)
                      -.|+.|......... ..|...-. -..-.|+.  |+..|. +..|.           +.+.|+.|++.|. ...|..|+
T Consensus       408 V~C~NC~~~i~l~~l-~lHe~~C~-r~~V~Cp~~~Cg~v~~-r~el~-----------~H~~C~~Cgk~f~-~s~LekH~  472 (567)
T PLN03086        408 VECRNCKHYIPSRSI-ALHEAYCS-RHNVVCPHDGCGIVLR-VEEAK-----------NHVHCEKCGQAFQ-QGEMEKHM  472 (567)
T ss_pred             EECCCCCCccchhHH-HHHHhhCC-CcceeCCcccccceee-ccccc-----------cCccCCCCCCccc-hHHHHHHH
Confidence            469999887765543 35554221 12336874  999883 33333           3468999999996 68899999


Q ss_pred             hhcccCcccccccCchhhhHHhhhhhc
Q 039095           91 RVHSQKLRACNESGAVKSLVLKKKRSK  117 (492)
Q Consensus        91 ~~H~~k~~~C~~C~~~f~~~~~~~~h~  117 (492)
                      ++|+ +++.|+ |+..+ ....+..|.
T Consensus       473 ~~~H-kpv~Cp-Cg~~~-~R~~L~~H~  496 (567)
T PLN03086        473 KVFH-EPLQCP-CGVVL-EKEQMVQHQ  496 (567)
T ss_pred             HhcC-CCccCC-CCCCc-chhHHHhhh
Confidence            9875 778887 87533 333444443

>PHA00733 hypothetical protein

Probab=99.10  E-value=2.7e-11  Score=95.73  Aligned_cols=92  Identities=14%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             chhhhhhccCCCCccccccccccccChhHHHhh--hh---ccCcccccccccccchhhhcChhhHhhhhhhcccCccccc
Q 039095           27 SFNHAASASASTQESQCKVCGKDFESLKALYGH--MR---HHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACN  101 (492)
Q Consensus        27 ~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H--~r---~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~  101 (492)
                      .|..+-..-...+++.|.+|.+.|.....|..|  ++   .++++  +||.|+.||+.|....+|..|++.| ..+|.|.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~--kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~  103 (128)
T PHA00733         27 ELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAV--SPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCP  103 (128)
T ss_pred             HhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCC--CCccCCCCCCcCCCHHHHHHHHhcC-CcCccCC
Confidence            444444444567889999999999988877766  21   23335  8999999999999999999999987 5679999


Q ss_pred             ccCchhhhHHhhhhhccccc
Q 039095          102 ESGAVKSLVLKKKRSKRKRY  121 (492)
Q Consensus       102 ~C~~~f~~~~~~~~h~~~~~  121 (492)
                      +|++.|.....+..|+.+.+
T Consensus       104 ~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733        104 VCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCCccCCHHHHHHHHHHhc
Confidence            99999999999999887654

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.96  E-value=2.1e-10  Score=104.01  Aligned_cols=83  Identities=23%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             cccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCccc-------------------------
Q 039095           13 YDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRE-------------------------   67 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~-------------------------   67 (492)
                      |.|..|...|.+.-.|..|.-.----..|+|+.|+|+|+...+|..|.|+|....                         
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            9999999999999999888653333346999999999999999999999995431                         


Q ss_pred             ------ccccccccchhhhcChhhHhhhhhhccc
Q 039095           68 ------RERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        68 ------~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                            .-.|.|.+|+|.|.++.-|+.|+.+|+.
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                  0238899999999999999999888873

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.84  E-value=2.5e-09  Score=97.12  Aligned_cols=53  Identities=28%  Similarity=0.559  Sum_probs=47.1

Q ss_pred             ccccccccccccChhHHHhhh--hccCcccccccccccchhhhcChhhHhhhhhhcccC
Q 039095           40 ESQCKVCGKDFESLKALYGHM--RHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQK   96 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~--r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k   96 (492)
                      .|.|.+|...|.....|.+|.  |+-+    .-|+|+.|+|.|+-..||..|.|+|.-+
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~----vEYrCPEC~KVFsCPANLASHRRWHKPR  321 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVH----VEYRCPECDKVFSCPANLASHRRWHKPR  321 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEE----eeecCCcccccccCchhhhhhhcccCCc
Confidence            499999999999999999995  5554    3599999999999999999999999643

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.82  E-value=8.6e-10  Score=60.43  Aligned_cols=25  Identities=36%  Similarity=0.721  Sum_probs=17.6

Q ss_pred             HHHhhhhccCcccccccccccchhhhc
Q 039095           55 ALYGHMRHHSRRERERIQCKECGKALL   81 (492)
Q Consensus        55 ~L~~H~r~H~~~~~k~y~C~~C~k~F~   81 (492)
                      +|.+||++|+++  +||+|++|+++|.
T Consensus         1 ~l~~H~~~H~~~--k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGE--KPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSS--SSEEESSSSEEES
T ss_pred             CHHHHhhhcCCC--CCCCCCCCcCeeC
Confidence            466777777777  6777777777765

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.82  E-value=9.2e-10  Score=60.32  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=17.0

Q ss_pred             hccccCCCCcccCCccccccCC
Q 039095          396 EDLMQRGNKEHTCRICLKVFAT  417 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~F~~  417 (492)
                      |+++|+|+|||.|++|+++|.+
T Consensus         5 H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    5 HMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHSSSSSEEESSSSEEESS
T ss_pred             HhhhcCCCCCCCCCCCcCeeCc
Confidence            3344448999999999999974

...

>PHA00732 hypothetical protein

Probab=98.66  E-value=1e-08  Score=72.98  Aligned_cols=48  Identities=27%  Similarity=0.484  Sum_probs=34.8

Q ss_pred             ccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      ||.|..|++.|.+...|+.|++.++    .++.|+.||+.|.   +|..|++++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H----~~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH----TLTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc----CCCccCCCCCEeC---ChhhhhcccC
Confidence            5778888888888888888887432    2457888888886   5777776654

>PHA00732 hypothetical protein

Probab=98.64  E-value=1.4e-08  Score=72.23  Aligned_cols=47  Identities=26%  Similarity=0.473  Sum_probs=39.4

Q ss_pred             ceecccCccccccchhhhhhccc-CCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhh
Q 039095          343 EIRCQACNKIFCSRRALGGHQRM-HSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQAL  421 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L  421 (492)
                      ||.|+.||+.|.+..+|+.|++. |+                                     ++.|+.|+++|.   .|
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-------------------------------------~~~C~~CgKsF~---~l   40 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-------------------------------------LTKCPVCNKSYR---RL   40 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-------------------------------------CCccCCCCCEeC---Ch
Confidence            58999999999999999999985 54                                     357999999998   58


Q ss_pred             hhhhhhcc
Q 039095          422 GGHKRAHL  429 (492)
Q Consensus       422 ~~H~r~H~  429 (492)
                      ..|++++.
T Consensus        41 ~~H~~~~~   48 (79)
T PHA00732         41 NQHFYSQY   48 (79)
T ss_pred             hhhhcccC
Confidence            88885543

>PHA00616 hypothetical protein

Probab=98.60  E-value=8.6e-09  Score=62.73  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             ceecccCccccccchhhhhhcccCCCCCCCCCC
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPV  375 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  375 (492)
                      ||+|..||+.|..++.|..|++.|+|++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            689999999999999999999999966655554

>PHA00616 hypothetical protein

Probab=98.59  E-value=1.4e-08  Score=61.85  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             ccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      ||+|..||+.|...+.|.+|++.|+++  ++|.|++=
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~--~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ--NKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC--CccceeEE
Confidence            566777777777777777777777776  66666543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.39  E-value=2.6e-07  Score=61.16  Aligned_cols=51  Identities=24%  Similarity=0.461  Sum_probs=37.0

Q ss_pred             ccccccccccccChhHHHhhhhc-cCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRH-HSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~-H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      .|.|++|++ -.+...|..|... |..+. +.+.||+|...++  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~-~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSES-KNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCC-CCccCCCchhhhh--hHHHHHHHHhc
Confidence            488888888 4556788888654 44443 6788999988655  38888888654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.27  E-value=2.6e-07  Score=49.27  Aligned_cols=23  Identities=39%  Similarity=0.678  Sum_probs=21.9

Q ss_pred             ccCCccccccCCchhhhhhhhhc
Q 039095          406 HTCRICLKVFATGQALGGHKRAH  428 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H  428 (492)
                      |.|++|++.|.++..|.+||++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.23  E-value=6.6e-07  Score=59.22  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=41.2

Q ss_pred             ceecccCccccccchhhhhhcc-cCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhh
Q 039095          343 EIRCQACNKIFCSRRALGGHQR-MHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQAL  421 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L  421 (492)
                      .|+|++|++ ..+...|..|.. .|.+                                 +.+.+.|++|...++  .+|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~---------------------------------~~~~v~CPiC~~~~~--~~l   45 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRS---------------------------------ESKNVVCPICSSRVT--DNL   45 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcC---------------------------------CCCCccCCCchhhhh--hHH
Confidence            489999999 566789999975 5663                                 346799999998766  499


Q ss_pred             hhhhhhccc
Q 039095          422 GGHKRAHLV  430 (492)
Q Consensus       422 ~~H~r~H~~  430 (492)
                      .+||+.+++
T Consensus        46 ~~Hl~~~H~   54 (54)
T PF05605_consen   46 IRHLNSQHR   54 (54)
T ss_pred             HHHHHHhcC
Confidence            999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.11  E-value=9.1e-07  Score=47.13  Aligned_cols=22  Identities=45%  Similarity=0.893  Sum_probs=11.7

Q ss_pred             cccccccccccChhHHHhhhhc
Q 039095           41 SQCKVCGKDFESLKALYGHMRH   62 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~   62 (492)
                      |+|+.|++.|.++..|++||+.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4455555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.99  E-value=3.6e-06  Score=74.03  Aligned_cols=67  Identities=19%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             CCCceeccc--Cccccccchhhhhhcc-cCCCCCCCCCC----cCCCCCCCCcccchhhhhhhhccccCCCCcccCCccc
Q 039095          340 KESEIRCQA--CNKIFCSRRALGGHQR-MHSAKRSSLPV----KTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICL  412 (492)
Q Consensus       340 ~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~----~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~  412 (492)
                      +.|||+|++  |.|.|.....|+.|+. -|-..+...=+    .=.|.                    ...|||.|++|+
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~--------------------~~~KPYrCevC~  405 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFS--------------------AKDKPYRCEVCD  405 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCcccccccc--------------------ccCCceeccccc
Confidence            469999987  9999999999999975 46332211111    01111                    167999999999


Q ss_pred             cccCCchhhhhhhh
Q 039095          413 KVFATGQALGGHKR  426 (492)
Q Consensus       413 k~F~~~~~L~~H~r  426 (492)
                      |+|+....|+.|++
T Consensus       406 KRYKNlNGLKYHr~  419 (423)
T COG5189         406 KRYKNLNGLKYHRK  419 (423)
T ss_pred             hhhccCccceeccc
Confidence            99999999999976

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.89  E-value=5.1e-06  Score=44.77  Aligned_cols=24  Identities=38%  Similarity=0.650  Sum_probs=20.5

Q ss_pred             ccCCccccccCCchhhhhhhhhcc
Q 039095          406 HTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999874

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.85  E-value=6e-06  Score=45.91  Aligned_cols=26  Identities=38%  Similarity=0.598  Sum_probs=24.4

Q ss_pred             cccCCccccccCCchhhhhhhhhccc
Q 039095          405 EHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      ||.|.+|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            69999999999999999999999864

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.78  E-value=1.2e-05  Score=44.69  Aligned_cols=25  Identities=48%  Similarity=0.830  Sum_probs=16.4

Q ss_pred             ccccccccccccChhHHHhhhhccC
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~   64 (492)
                      ||.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4666666666666666666666664

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.76  E-value=9.8e-06  Score=43.62  Aligned_cols=23  Identities=52%  Similarity=0.944  Sum_probs=10.4

Q ss_pred             cccccccccccChhHHHhhhhcc
Q 039095           41 SQCKVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H   63 (492)
                      |.|++|++.|.+...|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555554443

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.71  E-value=1.4e-05  Score=61.28  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             ecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhhhh
Q 039095          345 RCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGH  424 (492)
Q Consensus       345 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~~H  424 (492)
                      +|..|+..|.+...|..|+...++...-......   ...   .+..+    .+ ..-...|.|.+|++.|.+...|..|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~---~~~---~~~~~----~~-~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLV---DPN---RLLNY----LR-KKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Cccccccccccccccccccccccccccccccccc---ccc---ccccc----cc-cccCCCCCCCccCCCCcCHHHHHHH
Confidence            5999999999999999999654332111000000   000   00000    00 0012379999999999999999999


Q ss_pred             hhhcc
Q 039095          425 KRAHL  429 (492)
Q Consensus       425 ~r~H~  429 (492)
                      |+.+.
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            99753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.68  E-value=1.5e-05  Score=61.19  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=20.2

Q ss_pred             ccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhc
Q 039095           14 DLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        14 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H   93 (492)
                      +|.+|+..|.+...|..|+....+-.   -. ....+.....|..+++.-..   ..+.|.+|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~~~~~---~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLRKKVK---ESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccc---cc-cccccccccccccccccccC---CCCCCCccCCCCcCHHHHHHHHcCc
Confidence            58888888888888888875433221   11 22333355555566554332   3688999999999999999998864

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.67  E-value=1.5e-05  Score=70.18  Aligned_cols=55  Identities=24%  Similarity=0.515  Sum_probs=36.4

Q ss_pred             CCCcccccc--ccccccChhHHHhhhh-ccCcc----------------cccccccccchhhhcChhhHhhhhh
Q 039095           37 STQESQCKV--CGKDFESLKALYGHMR-HHSRR----------------ERERIQCKECGKALLSAKSLSNHMR   91 (492)
Q Consensus        37 ~~~~~~C~~--C~k~F~~~~~L~~H~r-~H~~~----------------~~k~y~C~~C~k~F~~~~~L~~H~~   91 (492)
                      +++||+|++  |.|.++.+..|+-||. -|...                +.|||.|++|+|+|.....|+-|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358888876  8888888888888865 23111                1166677777777766666666654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.51  E-value=4.3e-05  Score=47.54  Aligned_cols=37  Identities=19%  Similarity=0.485  Sum_probs=14.9

Q ss_pred             HhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           57 YGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        57 ~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      ..+.+.|.... .|-.|++|+..++...+|++|+.+++
T Consensus        12 ~~~~k~~~~S~-~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   12 TKKPKSKSQSE-QPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             ----CCCCTTS---EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             hhHHHHhhccC-CCCCCCcchhhccchhhHHHHHHHHh
Confidence            33444443333 55566666666666666666665544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.39  E-value=9.1e-05  Score=40.56  Aligned_cols=25  Identities=40%  Similarity=0.622  Sum_probs=22.9

Q ss_pred             ccCCccccccCCchhhhhhhhhccc
Q 039095          406 HTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      |.|+.|++.|.+...|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999998753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.31  E-value=0.00013  Score=45.42  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=25.1

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ..+..+.|-.|++|+..+....+|++|+.++++.
T Consensus        17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             CCCTTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             HhhccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            3455678999999999999999999999888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.14  E-value=0.00021  Score=39.02  Aligned_cols=24  Identities=46%  Similarity=0.919  Sum_probs=16.9

Q ss_pred             cccccchhhhcChhhHhhhhhhcc
Q 039095           71 IQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        71 y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      |+|+.|+++|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            567777777777777777777553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.07  E-value=0.0002  Score=38.78  Aligned_cols=23  Identities=35%  Similarity=0.678  Sum_probs=21.4

Q ss_pred             ccCCccccccCCchhhhhhhhhc
Q 039095          406 HTCRICLKVFATGQALGGHKRAH  428 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H  428 (492)
                      |.|++|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999865

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=97.07  E-value=0.012  Score=58.76  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             ccccCCcccccccCCCCCccccC---CCCC--Cceecc--cCccccccchhhhhhcccCCCCCCCCCCcC
Q 039095          315 AEYGGDSSSKAMCNASDYDVFDD---PQKE--SEIRCQ--ACNKIFCSRRALGGHQRMHSAKRSSLPVKT  377 (492)
Q Consensus       315 ~~~~C~~C~~~f~~~~~l~~h~~---~~~~--~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  377 (492)
                      .++.|..|...|.....|..|..   |.++  +++.|+  .|++.|.....|..|..+|++.+++.+..-
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLL  357 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccc
Confidence            47999999999999999999665   8888  999999  899999999999999999999988887774

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.96  E-value=0.00035  Score=37.82  Aligned_cols=23  Identities=35%  Similarity=0.722  Sum_probs=13.6

Q ss_pred             cccccccccccChhHHHhhhhcc
Q 039095           41 SQCKVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H   63 (492)
                      |.|.+|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            45666666666666666665543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.93  E-value=0.00035  Score=37.40  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             ccCCccccccCCchhhhhhhhhccc
Q 039095          406 HTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      |+|+.|+.... +..|.+|+++|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999998764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.82  E-value=0.00057  Score=37.73  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=15.6

Q ss_pred             cccccccccccChhHHHhhhhc
Q 039095           41 SQCKVCGKDFESLKALYGHMRH   62 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~   62 (492)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777665

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.81  E-value=0.00038  Score=57.28  Aligned_cols=37  Identities=24%  Similarity=0.552  Sum_probs=21.0

Q ss_pred             ccccccccccccChhHHHhhhhccCcccccccccccchhhhcC
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLS   82 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~   82 (492)
                      +|.|. |++   ....+.+|.++|+++  ++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~--~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGE--AVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCC--ccEECCCCCceeEE
Confidence            45665 555   455556666666655  55666666555543

>PRK04860 hypothetical protein; Provisional

Probab=96.81  E-value=0.0005  Score=56.59  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      -+|.|. |++   ....+.+|.++|+|++
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~  142 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEA  142 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCc
Confidence            479998 998   8888999999999433

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.74  E-value=0.00059  Score=37.69  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=21.3

Q ss_pred             ccCCccccccCCchhhhhhhhhc
Q 039095          406 HTCRICLKVFATGQALGGHKRAH  428 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H  428 (492)
                      |.|.+|++.|.+...|..|++..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            88999999999999999999853

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0017  Score=64.99  Aligned_cols=48  Identities=31%  Similarity=0.704  Sum_probs=30.6

Q ss_pred             cccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcccCcccccccC
Q 039095           41 SQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESG  104 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~  104 (492)
                      +.|.+|++.|.-..              ..-.|..| -.|.+..+|+.||+.-+ +.+.|..|-
T Consensus       100 ~~C~~C~~~~~~~~--------------~~~~~~~c-~~~~s~~~Lk~H~~~~H-~~~~c~lC~  147 (669)
T KOG2231|consen  100 HSCHICDRRFRALY--------------NKKECLHC-TEFKSVENLKNHMRDQH-KLHLCSLCL  147 (669)
T ss_pred             hhcCccccchhhhc--------------ccCCCccc-cchhHHHHHHHHHHHhh-hhhcccccc
Confidence            68999988875332              23457777 67777788888875322 334555553

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.61  E-value=0.00065  Score=36.30  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=8.3

Q ss_pred             cccccchhhhcChhhHhhhhhh
Q 039095           71 IQCKECGKALLSAKSLSNHMRV   92 (492)
Q Consensus        71 y~C~~C~k~F~~~~~L~~H~~~   92 (492)
                      |+|+.|+.... ...|.+|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            34444444443 4444444444

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.48  E-value=0.0022  Score=68.13  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             cccccCCcccccccCCCCCccccC--CCCCCceecccCccccccchhhhhhcccC
Q 039095          314 YAEYGGDSSSKAMCNASDYDVFDD--PQKESEIRCQACNKIFCSRRALGGHQRMH  366 (492)
Q Consensus       314 ~~~~~C~~C~~~f~~~~~l~~h~~--~~~~~~~~C~~C~k~F~~~~~L~~H~~~H  366 (492)
                      ...+.|..|++...-..+|+.|+.  ++...|..|..|+-.+.....|..+.+.+
T Consensus       587 kP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  587 KPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             CCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            367999999999999999999773  45555699999999999999999999988

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.95  E-value=0.0044  Score=61.89  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=53.6

Q ss_pred             CccccCCCCcccccccchhhhhh--ccCCC--Cccccc--cccccccChhHHHhhhhccCcc
Q 039095           11 ISYDLRENPKKSWKFSSFNHAAS--ASAST--QESQCK--VCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        11 ~~~~C~~C~k~f~~~~~l~~H~~--~H~~~--~~~~C~--~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .++.|..|...|.....|..|.+  .|.++  +|+.|+  .|++.|.....|.+|..+|++.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence            47999999999999999999999  89999  999999  8999999999999999999887

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.70  E-value=0.0063  Score=64.83  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             CCcccccccCCCCCcccc--CCCCCCceecccCccccccchhhhhhccc-CCCCCCCCCCcCCCCCCCCcccchhhhhhh
Q 039095          319 GDSSSKAMCNASDYDVFD--DPQKESEIRCQACNKIFCSRRALGGHQRM-HSAKRSSLPVKTTMFTETEPHSKLVKLECI  395 (492)
Q Consensus       319 C~~C~~~f~~~~~l~~h~--~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~  395 (492)
                      |..|...+.....+..+.  .+.-.+.|+|+.|+..|+....|..|||+ |..-+.   ..|-+.........       
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~gq~~~~~ar-------  508 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKAGQNHPRLAR-------  508 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch---hHhHhccccccccc-------
Confidence            445555555555555422  45556889999999999999999999996 544333   33322111111000       


Q ss_pred             hccccCCCCcccCCccccccCCchhhhhhhh--hcccC
Q 039095          396 EDLMQRGNKEHTCRICLKVFATGQALGGHKR--AHLVK  431 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r--~H~~~  431 (492)
                      ....--+.+||.|..|..+|+++.+|.+||.  .|..+
T Consensus       509 g~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~  546 (1406)
T KOG1146|consen  509 GEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNE  546 (1406)
T ss_pred             cccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHH
Confidence            0000116799999999999999999999987  45443

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=95.44  E-value=0.0042  Score=52.75  Aligned_cols=47  Identities=34%  Similarity=0.603  Sum_probs=41.0

Q ss_pred             ecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhhhh
Q 039095          345 RCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGH  424 (492)
Q Consensus       345 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~~H  424 (492)
                      =|-+|++-|.....|.+|++.                                      |-|+|.||.|...+.-.|..|
T Consensus        12 wcwycnrefddekiliqhqka--------------------------------------khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA--------------------------------------KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhh--------------------------------------ccceeeeehhhhccCCCceee
Confidence            389999999999999999853                                      349999999999999999999


Q ss_pred             -hhhcc
Q 039095          425 -KRAHL  429 (492)
Q Consensus       425 -~r~H~  429 (492)
                       |++|.
T Consensus        54 cmqvhk   59 (341)
T KOG2893|consen   54 CMQVHK   59 (341)
T ss_pred             hhhhhh
Confidence             88884

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.27  E-value=0.01  Score=31.84  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=18.3

Q ss_pred             ccCCccccccCCchhhhhhhhh
Q 039095          406 HTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      ..|++||+.| ....|.+|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 78889999864

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.77  E-value=0.017  Score=31.04  Aligned_cols=19  Identities=32%  Similarity=0.833  Sum_probs=11.1

Q ss_pred             ccccccccccChhHHHhhhh
Q 039095           42 QCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        42 ~C~~C~k~F~~~~~L~~H~r   61 (492)
                      +|+.|++.| ....|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 4555666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.64  E-value=0.017  Score=34.06  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             cccCCccccccCCchhhhhhhhh
Q 039095          405 EHTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68999999999999999999863

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.28  E-value=0.025  Score=33.32  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=15.3

Q ss_pred             ccccccccccccChhHHHhhhhc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRH   62 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~   62 (492)
                      +|.|++|++.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777766667666653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.67  E-value=0.04  Score=31.92  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=14.3

Q ss_pred             cccCCCCcccccccchhhhhhccCCCCccccccccc
Q 039095           13 YDLRENPKKSWKFSSFNHAASASASTQESQCKVCGK   48 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k   48 (492)
                      |+|.+||..+....            .++.|++|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            66777776654332            4566666654

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=92.15  E-value=0.039  Score=47.07  Aligned_cols=47  Identities=36%  Similarity=0.711  Sum_probs=35.1

Q ss_pred             ccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhh-hhhcc
Q 039095           42 QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH-MRVHS   94 (492)
Q Consensus        42 ~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H-~~~H~   94 (492)
                      =|=+|++.|....-|..|++.      |-|+|.+|.|..-+--.|..| |.+|.
T Consensus        12 wcwycnrefddekiliqhqka------khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA------KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhh------ccceeeeehhhhccCCCceeehhhhhh
Confidence            377888888888888887653      568888888777777777777 66675

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.51  E-value=0.081  Score=44.18  Aligned_cols=79  Identities=14%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             CCccccCC--CCcccccccchhhhhhc-cCCCCccccccccccccChhHHHhhhhccCcc--------ccccccccc--c
Q 039095           10 HISYDLRE--NPKKSWKFSSFNHAASA-SASTQESQCKVCGKDFESLKALYGHMRHHSRR--------ERERIQCKE--C   76 (492)
Q Consensus        10 ~~~~~C~~--C~k~f~~~~~l~~H~~~-H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~--------~~k~y~C~~--C   76 (492)
                      .+.|.|++  |...|.....+.+|... |.+    .|.+|.+.|.+..-|..|+.-.+.-        +..-|+|-+  |
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgC  152 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGC  152 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhh
Confidence            34477776  67778887777777543 332    7888888888888888886532211        114588865  8


Q ss_pred             hhhhcChhhHhhhhhh
Q 039095           77 GKALLSAKSLSNHMRV   92 (492)
Q Consensus        77 ~k~F~~~~~L~~H~~~   92 (492)
                      +..|.+...-+.||-.
T Consensus       153 t~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  153 TEKFKTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhhhhhHHHH
Confidence            8888888888888653

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.07  E-value=0.64  Score=35.44  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=22.1

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      ...|.|+.|...|=-.-..-.|..+|.
T Consensus        79 ~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        79 SHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             ccceeCCCCCCccccccchhhhhhccC
Confidence            456889999998888888888888775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.51  E-value=0.15  Score=44.75  Aligned_cols=25  Identities=28%  Similarity=0.702  Sum_probs=21.1

Q ss_pred             CCceecccCccccccchhhhhhccc
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRM  365 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~  365 (492)
                      ++.++|++|++.|.+..-+....|+
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~   27 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRV   27 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceE
Confidence            3568999999999999888888764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=90.30  E-value=0.19  Score=45.61  Aligned_cols=110  Identities=19%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             CccccCCCCcccc-cccchhhhhh-ccC-----C----------------CCccccccccccccChhHHHhhhhc--cCc
Q 039095           11 ISYDLRENPKKSW-KFSSFNHAAS-ASA-----S----------------TQESQCKVCGKDFESLKALYGHMRH--HSR   65 (492)
Q Consensus        11 ~~~~C~~C~k~f~-~~~~l~~H~~-~H~-----~----------------~~~~~C~~C~k~F~~~~~L~~H~r~--H~~   65 (492)
                      ..-+|-+|...+. ..+..-+|+. .|.     .                -..++|-.|.|.|..+..|+.|||.  |..
T Consensus       143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr  222 (423)
T KOG2482|consen  143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR  222 (423)
T ss_pred             eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence            3457889988866 4455555543 231     1                1137999999999999999999974  433


Q ss_pred             ccc----------------------------------------------------cccccccchhhhcChhhHhhhhhh-
Q 039095           66 RER----------------------------------------------------ERIQCKECGKALLSAKSLSNHMRV-   92 (492)
Q Consensus        66 ~~~----------------------------------------------------k~y~C~~C~k~F~~~~~L~~H~~~-   92 (492)
                      ..+                                                    -...|-.|.....+...|..||++ 
T Consensus       223 inPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~v  302 (423)
T KOG2482|consen  223 INPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIV  302 (423)
T ss_pred             cCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHH
Confidence            210                                                    115899999999999999999985 


Q ss_pred             cc-c--C------------------------cccccccCchhhhHHhhhhhcccc
Q 039095           93 HS-Q--K------------------------LRACNESGAVKSLVLKKKRSKRKR  120 (492)
Q Consensus        93 H~-~--k------------------------~~~C~~C~~~f~~~~~~~~h~~~~  120 (492)
                      |. .  |                        .-.|-.|+-.|-....+..|+-..
T Consensus       303 He~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  303 HEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            42 1  1                        125677776666666666666443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.26  E-value=0.38  Score=43.79  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             CccccCCCC---ccccccc------chhhhhhccCCCCcc----ccccccccccChhHHHhhhhccCcccccccccccch
Q 039095           11 ISYDLRENP---KKSWKFS------SFNHAASASASTQES----QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECG   77 (492)
Q Consensus        11 ~~~~C~~C~---k~f~~~~------~l~~H~~~H~~~~~~----~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~   77 (492)
                      ..+.|.+|-   +.|+...      .|+.|...=..+..|    .|.+|.+.|-....|.+|+|.-+.   +   |.+|+
T Consensus       178 ~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE---~---ChICD  251 (493)
T COG5236         178 GFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE---A---CHICD  251 (493)
T ss_pred             CcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh---h---hhhhh
Confidence            346677774   3466543      445554432222233    799999999999999999997665   3   55554


Q ss_pred             -------hhhcChhhHhhhhhhcccCcccccc--cC----chhhhHHhhhhhccccccc
Q 039095           78 -------KALLSAKSLSNHMRVHSQKLRACNE--SG----AVKSLVLKKKRSKRKRYNF  123 (492)
Q Consensus        78 -------k~F~~~~~L~~H~~~H~~k~~~C~~--C~----~~f~~~~~~~~h~~~~~~~  123 (492)
                             .-|..-.+|..|.+.-+   |.|.+  |-    .+|.....|+.|...-+..
T Consensus       252 ~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~  307 (493)
T COG5236         252 MVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKV  307 (493)
T ss_pred             ccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccHHHHHHHHHHHhhc
Confidence                   46888899999987321   55544  21    3577777777777554433

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.24  E-value=0.12  Score=32.95  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=12.3

Q ss_pred             cccccccchhhhcChhhHhhhhh
Q 039095           69 ERIQCKECGKALLSAKSLSNHMR   91 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~   91 (492)
                      .-+.||-||+.|..+....+|+.
T Consensus        16 ~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          16 EFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             eeeeCCchhHHHHHhHHHHHHhh
Confidence            45555555555555555555544

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.95  E-value=1.4  Score=33.72  Aligned_cols=91  Identities=8%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             CCccchhhhccccchhhhhhhcchh--hcccceeeecCCcccccCCCcccccCCcccccccCCCCCccccCCCCCCceec
Q 039095          269 GSVASDDEIGKESSEDLMEEDGLDA--EAGKRIITSTSSKKVGFNACYAEYGGDSSSKAMCNASDYDVFDDPQKESEIRC  346 (492)
Q Consensus       269 ~~~~~c~~c~~~~~~~~~~~~h~~~--~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C  346 (492)
                      ..|..|..|+-......+|.+.+.-  ....       .....++.......|-.|...|........- .-.....|+|
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~-------f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~-~~~~~~~y~C   84 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKA-------FQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD-ELKDSHRYVC   84 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcc-------cccccccccCCCCcccCcCCCCCCccccccc-ccccccceeC
Confidence            4556688888776666555432211  1110       0000111111223588888888765422110 1223457899


Q ss_pred             ccCccccccchhhhhhcccCC
Q 039095          347 QACNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       347 ~~C~k~F~~~~~L~~H~~~H~  367 (492)
                      +.|...|=-.-.+-.|...|.
T Consensus        85 ~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        85 AVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CCCCCccccccchhhhhhccC
Confidence            999999988888888888886

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=88.85  E-value=0.25  Score=28.76  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=14.2

Q ss_pred             ccccCCCCcccccccchhhhhhccCCCCccccccccc
Q 039095           12 SYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGK   48 (492)
Q Consensus        12 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k   48 (492)
                      .|+|.+||..+....            .|..|++|+.
T Consensus         2 ~~~C~~CG~i~~g~~------------~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGEE------------APEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECCc------------CCCcCcCCCC
Confidence            366777776654321            3456766664

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.83  E-value=0.32  Score=37.60  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             ccc----ccchhhhcChhhHhhhhhhccc
Q 039095           71 IQC----KECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        71 y~C----~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      |.|    ..|+..+.+...|++|++.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    8899999999999999887654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.54  E-value=0.25  Score=44.92  Aligned_cols=82  Identities=16%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             ccccCCCCcccccccchhhhhhc--cCC----------------------------------------------------
Q 039095           12 SYDLRENPKKSWKFSSFNHAASA--SAS----------------------------------------------------   37 (492)
Q Consensus        12 ~~~C~~C~k~f~~~~~l~~H~~~--H~~----------------------------------------------------   37 (492)
                      .+.|-.|.|.|+.+..|+.||+.  |..                                                    
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            47899999999999999999983  211                                                    


Q ss_pred             CCc--cccccccccccChhHHHhhhhccCccc-------------------------ccccccccchhhhcChhhHhhhh
Q 039095           38 TQE--SQCKVCGKDFESLKALYGHMRHHSRRE-------------------------RERIQCKECGKALLSAKSLSNHM   90 (492)
Q Consensus        38 ~~~--~~C~~C~k~F~~~~~L~~H~r~H~~~~-------------------------~k~y~C~~C~k~F~~~~~L~~H~   90 (492)
                      ..+  -.|-+|....-+...|..||.+-+.=.                         .+.-.|-.|.-.|.....|..||
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm  354 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM  354 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence            111  389999999999999999998643210                         02246888999999999999999


Q ss_pred             hhc
Q 039095           91 RVH   93 (492)
Q Consensus        91 ~~H   93 (492)
                      .-+
T Consensus       355 ~e~  357 (423)
T KOG2482|consen  355 VED  357 (423)
T ss_pred             ccc
Confidence            854

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.98  E-value=0.47  Score=48.21  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             cccCCCCcccc---------------cccchhhhhh-ccCCCCcccccccc---------ccccChhHHHhhhhccCc-c
Q 039095           13 YDLRENPKKSW---------------KFSSFNHAAS-ASASTQESQCKVCG---------KDFESLKALYGHMRHHSR-R   66 (492)
Q Consensus        13 ~~C~~C~k~f~---------------~~~~l~~H~~-~H~~~~~~~C~~C~---------k~F~~~~~L~~H~r~H~~-~   66 (492)
                      +.|.+|+..|.               +...|+.|++ .|.   .+.|.+|-         ...-++..|..|++.=.. +
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~---~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~  176 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHK---LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDD  176 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhh---hhccccccccceeeeeeeehehHHHHHHHHhcCCCcc
Confidence            56777777773               5667888874 453   23444433         223345567777654222 1


Q ss_pred             c--ccccccccchhhhcChhhHhhhhhhcc
Q 039095           67 E--RERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        67 ~--~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      .  .---.|..|...|-....|.+||+.++
T Consensus       177 ~s~rGhp~C~~C~~~fld~~el~rH~~~~h  206 (669)
T KOG2231|consen  177 ESCRGHPLCKFCHERFLDDDELYRHLRFDH  206 (669)
T ss_pred             ccccCCccchhhhhhhccHHHHHHhhccce
Confidence            0  012457777777777777777777554

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.66  E-value=0.33  Score=28.73  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             ccCCcccccccCCCCCccccCCCCCCceecccCccccc
Q 039095          317 YGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFC  354 (492)
Q Consensus       317 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~  354 (492)
                      ..|+.|+..|.-..+.    ........+|+.|+..|.
T Consensus         3 i~Cp~C~~~y~i~d~~----ip~~g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK----IPPKGRKVRCSKCGHVFF   36 (36)
T ss_pred             EECCCCCCEEeCCHHH----CCCCCcEEECCCCCCEeC
Confidence            5789999888766653    345556789999999884

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.26  E-value=0.29  Score=40.07  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             ccCCcccccccCCCCCccccC-CCCCCceecccCccccccchhhhhhc
Q 039095          317 YGGDSSSKAMCNASDYDVFDD-PQKESEIRCQACNKIFCSRRALGGHQ  363 (492)
Q Consensus       317 ~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~C~~C~k~F~~~~~L~~H~  363 (492)
                      ++||.|+-.+..-..-..+.. -.-.+.++|+-||++|.+...+..=+
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~~~~   48 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVELVP   48 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEeccCcc
Confidence            479999976533333222221 11223499999999999887765543

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=86.48  E-value=0.49  Score=25.59  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=15.6

Q ss_pred             cCCcccccccCCCCCccccCCCCCCceecccCccccc
Q 039095          318 GGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFC  354 (492)
Q Consensus       318 ~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~  354 (492)
                      .|+.|+.......             -.|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~-------------~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESA-------------KFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhc-------------CcCCCCCCCCc
Confidence            4677776653333             47888888875

Several members are annotated as putative helicases.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=86.25  E-value=0.48  Score=36.20  Aligned_cols=30  Identities=30%  Similarity=0.832  Sum_probs=18.5

Q ss_pred             cccccccccccChhHHHhhhhccCcccccccccccchhhhcCh
Q 039095           41 SQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSA   83 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~   83 (492)
                      ..|+.||+.|-.-+           .  .|..||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLn-----------k--~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN-----------K--DPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC-----------C--CCccCCCCCCccCcc
Confidence            36777777765432           1  466777777777654

The function of members of this family is unknown.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=86.24  E-value=0.54  Score=48.91  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             cccCCcccccccCCCCCccccCCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhh
Q 039095          316 EYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECI  395 (492)
Q Consensus       316 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~  395 (492)
                      -.-|..|+..+                  +|+.|+-.      |    ..|...+-.+|..|++.               
T Consensus       435 ~l~C~~Cg~v~------------------~Cp~Cd~~------l----t~H~~~~~L~CH~Cg~~---------------  471 (730)
T COG1198         435 LLLCRDCGYIA------------------ECPNCDSP------L----TLHKATGQLRCHYCGYQ---------------  471 (730)
T ss_pred             eeecccCCCcc------------------cCCCCCcc------e----EEecCCCeeEeCCCCCC---------------
Confidence            45677777754                  78888764      3    34555566888888855               


Q ss_pred             hccccCCCCcccCCccccc
Q 039095          396 EDLMQRGNKEHTCRICLKV  414 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~  414 (492)
                            ...|+.|+.||-.
T Consensus       472 ------~~~p~~Cp~Cgs~  484 (730)
T COG1198         472 ------EPIPQSCPECGSE  484 (730)
T ss_pred             ------CCCCCCCCCCCCC
Confidence                  5689999999765

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.88  E-value=0.36  Score=30.92  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             cCCCCccccccccccccChhHHHhhhhccCc
Q 039095           35 SASTQESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        35 H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      -.|+.-++|+.|++.|....++.+|+..-++
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            4567778999999999999999999765444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.38  E-value=0.46  Score=41.74  Aligned_cols=17  Identities=6%  Similarity=-0.318  Sum_probs=9.2

Q ss_pred             CccccCCCCcccccccc
Q 039095           11 ISYDLRENPKKSWKFSS   27 (492)
Q Consensus        11 ~~~~C~~C~k~f~~~~~   27 (492)
                      +.+.||+|++.|++...
T Consensus         4 k~~~CPvC~~~F~~~~v   20 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKV   20 (214)
T ss_pred             CceECCCCCCeeeeeEE
Confidence            34556666666655543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.25  E-value=0.72  Score=35.26  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             ccccCCcccccccCCCCCccccCCCCCCceecccCccccccc
Q 039095          315 AEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSR  356 (492)
Q Consensus       315 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~~~  356 (492)
                      ....|+.||..|+...          ..|..|++||..|.-.
T Consensus         8 tKR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            3456888888886544          2567788888877766

The function of members of this family is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.21  E-value=0.61  Score=29.20  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=16.9

Q ss_pred             CCCcccCCccccccCCc----hhhhhhhh
Q 039095          402 GNKEHTCRICLKVFATG----QALGGHKR  426 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~----~~L~~H~r  426 (492)
                      +..-.+|.+|++.+...    ++|.+|++
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            45667999999999885    78999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>smart00614 ZnF_BED BED zinc finger

Probab=83.60  E-value=0.67  Score=29.86  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=20.4

Q ss_pred             cc-cCCccccccCCc-----hhhhhhhh-hcc
Q 039095          405 EH-TCRICLKVFATG-----QALGGHKR-AHL  429 (492)
Q Consensus       405 pf-~C~~C~k~F~~~-----~~L~~H~r-~H~  429 (492)
                      ++ .|..|++.+...     ++|.+|++ +|.
T Consensus        17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             eEEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            44 799999999776     58999998 664

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.27  E-value=0.74  Score=28.81  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=17.9

Q ss_pred             CCCceecccCccccccc----hhhhhhc-ccC
Q 039095          340 KESEIRCQACNKIFCSR----RALGGHQ-RMH  366 (492)
Q Consensus       340 ~~~~~~C~~C~k~F~~~----~~L~~H~-~~H  366 (492)
                      +....+|.+|++.+...    ++|.+|+ +.|
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            45668999999999885    8999998 444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=82.25  E-value=0.62  Score=27.94  Aligned_cols=34  Identities=9%  Similarity=0.265  Sum_probs=21.8

Q ss_pred             ccCCcccccccCCCCCccccCCCCCCceecccCccccc
Q 039095          317 YGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFC  354 (492)
Q Consensus       317 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~  354 (492)
                      +.|+.|+..|.-..+..    ........|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc----CCCCCEEECCCCCCEEE
Confidence            57888888776554321    12223678999988774

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=81.80  E-value=0.7  Score=46.95  Aligned_cols=56  Identities=11%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             ccCCcccccccCCCCCccccCCCCCCce-ecccCccccccchhhhhhcccCCCCCCCCCCcCC
Q 039095          317 YGGDSSSKAMCNASDYDVFDDPQKESEI-RCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTT  378 (492)
Q Consensus       317 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~-~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  378 (492)
                      ..|..||-.|+-...|..-+..+..+.| .|+.|.+-|..+-+    .|-|.  +|.-|+.|+
T Consensus       124 ~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~n----RRfHA--Qp~aCp~CG  180 (750)
T COG0068         124 INCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLN----RRFHA--QPIACPKCG  180 (750)
T ss_pred             cccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccc----ccccc--ccccCcccC
Confidence            3599999999999998888888888887 49999999988887    34555  444555555

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=81.62  E-value=0.79  Score=27.31  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             ccCCcccccccCCCCCccccCCCCCCceecccCccccc
Q 039095          317 YGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFC  354 (492)
Q Consensus       317 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~  354 (492)
                      ..|+.|+..|.=..+.    ...+.+..+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH----cccCCcEEECCCCCcEee
Confidence            4688898888655542    234556789999998884

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=81.57  E-value=0.93  Score=24.53  Aligned_cols=21  Identities=14%  Similarity=0.528  Sum_probs=17.2

Q ss_pred             ccCCccccccCCchhhhhhhhh
Q 039095          406 HTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      ..|++|++.+ ....++.|+..
T Consensus         2 v~CPiC~~~v-~~~~in~HLD~   22 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLDS   22 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHHH
Confidence            3699999999 66789999863

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.28  E-value=1.1  Score=36.68  Aligned_cols=37  Identities=22%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             CCCccccccccccccChhHHHh-hhhccCcccccccccccchhhh
Q 039095           37 STQESQCKVCGKDFESLKALYG-HMRHHSRRERERIQCKECGKAL   80 (492)
Q Consensus        37 ~~~~~~C~~C~k~F~~~~~L~~-H~r~H~~~~~k~y~C~~C~k~F   80 (492)
                      +..-|.|+.|+..|.....+.. +    . .  ..|.||.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~d----~-~--~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLLD----M-D--GTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhcC----C-C--CcEECCCCCCEE
Confidence            3345666666666665443332 1    1 2  246666666543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=81.11  E-value=0.71  Score=37.89  Aligned_cols=17  Identities=29%  Similarity=0.722  Sum_probs=10.6

Q ss_pred             ccccccchhhhcChhhH
Q 039095           70 RIQCKECGKALLSAKSL   86 (492)
Q Consensus        70 ~y~C~~C~k~F~~~~~L   86 (492)
                      .|+|+.||++|.+.-.+
T Consensus        28 ~~~c~~c~~~f~~~e~~   44 (154)
T PRK00464         28 RRECLACGKRFTTFERV   44 (154)
T ss_pred             eeeccccCCcceEeEec
Confidence            46677777777655444

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=80.28  E-value=1.3  Score=27.95  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             ccccCCcccccccCCCCCccccCCCCCCceecccCccccc
Q 039095          315 AEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFC  354 (492)
Q Consensus       315 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~  354 (492)
                      ..|.|+.|+..|.-....         ..++|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECCCC---------CceECCCCCCeEE
Confidence            357788887776554431         1577888876544

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=80.22  E-value=0.87  Score=27.76  Aligned_cols=14  Identities=7%  Similarity=-0.002  Sum_probs=8.0

Q ss_pred             cccCCCCccccccc
Q 039095           13 YDLRENPKKSWKFS   26 (492)
Q Consensus        13 ~~C~~C~k~f~~~~   26 (492)
                      |.|+.|++.|.-..
T Consensus         6 y~C~~Cg~~fe~~~   19 (41)
T smart00834        6 YRCEDCGHTFEVLQ   19 (41)
T ss_pred             EEcCCCCCEEEEEE
Confidence            56666666665443

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-05
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	4e-06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	4e-04
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	6e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	5e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	9e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHSQKLRAC 100
           QC++CG       +L  H R H+         C+ CGK      S++ H       L   
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68

Query: 101 NESGAVKS 108
            +  +  S
Sbjct: 69  PQESSGPS 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 72/486 (14%), Positives = 141/486 (29%), Gaps = 142/486 (29%)

Query: 76  CGKALLSAKSLSNHMRVHSQ--------KLRACNESGAVKSLVLKKKRSKRKRYNF-IGS 126
            GK  ++     ++ +V  +         L+ CN    V  L + +K   +   N+   S
Sbjct: 161 SGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRS 217

Query: 127 SSISTLNESLSSVTEIDQEVVQT---AISLMMLSRGVQD---WGKFCSSSEFSCNDSVTI 180
              S +   + S+    + ++++      L++L   VQ+   W  F      SC      
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAF----NLSC------ 266

Query: 181 EVKSFGKKKRLLTNRAGCFVSNGNGCLLKKPRLEKLDSIVLYEKEEDECHEVGSGAESDE 240
                   K LLT R        +        L+   S+ L   E               
Sbjct: 267 --------KILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDE--------------- 302

Query: 241 GKKVKLEVFIEKFYEEGEFEMPK--LDVKPGSVASDDEIGKESSEDLMEEDG---LDAEA 295
                  + + K+ +    ++P+  L   P  ++    I +   + L   D    ++ + 
Sbjct: 303 ----VKSLLL-KYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDK 354

Query: 296 GKRIITST--SSKKVGFNACYAEYG---GDS--SSKAMCNASDYDVFDDPQKESEIRCQA 348
              II S+    +   +   +         +   +  +       +  D      +  + 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKL 411

Query: 349 CNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLV------KLECIEDLMQR- 401
                  ++       + S     L +K  +  E   H  +V      K    +DL+   
Sbjct: 412 HKYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 402 -------------GNKEHTCRICL-------------KVFATGQALGGHKRAHLVKNLDN 435
                         N EH  R+ L             K+     A           ++ N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA------SGSILN 522

Query: 436 ILQD-------ITV-EQDYSDLSNDLDLNISNTLEEEVHGDAGSELWVVEGKQHKHERLL 487
            LQ        I   +  Y  L N + L+    +EE +                K+  LL
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLI-------------CSKYTDLL 568

Query: 488 --SMMA 491
             ++MA
Sbjct: 569 RIALMA 574

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERERI---QCKECGKALLSAKSLSNHMRVHS-QKL 97
            C  C K F   + L  H + +            C +CGK      +++ H    +    
Sbjct: 17  ACSHCDKTFRQKQLLDMHFKRYHD-PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 98  RACNESG 104
                SG
Sbjct: 76  VEGENSG 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHSQKLRAC 100
           QC++C ++F     L  H+R H+    E+   C  CG+    +     H  +        
Sbjct: 5   QCRICMRNFSRSDHLTTHIRTHT---GEKPFACDICGRKFARSDERKRHRDIQHILPILE 61

Query: 101 NE 102
           ++
Sbjct: 62  DK 63

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 8/56 (14%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNH---MRVH 93
           C +CG+ F        H            I   +  + L     L N    ++  
Sbjct: 33 ACDICGRKFARSDERKRHRDIQ----HILPILEDKVEELLSKNYHLENEVARLKKL 84

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 42 QCKVCGKDFESLKALYGHMRHH-------SRRERERIQCKECGKALLSAKS-LSNHMRVH 93
            K C + F ++  L  H+          +       +C   GK+   AK  L NH+RVH
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS-FKAKYKLVNHIRVH 85

Query: 94 S 94
          +
Sbjct: 86 T 86

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 2/48 (4%)

Query: 46 CGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH 93
           G   + +K           +       K C +   +   L  H+ + 
Sbjct: 3  SGSSGQPIKQELSCKWIDEAQLSRP--KKSCDRTFSTMHELVTHVTME 48

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH---SQKL 97
            C++CGK F  +  L  H   HS    E+   C  CG        +S H+R H     K 
Sbjct: 9   ACEICGKIFRDVYHLNRHKLSHSG---EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 98  RACNESG 104
             C   G
Sbjct: 66  YICQSCG 72

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHM-RVHS 94
           C VCG  F+    +  H+R H     +   C+ CGK       L+ H+ +VHS
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMR-VHS 94
          +C +C   F     +  H+         +  C  C   +     L  H+R  HS
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
           +C+VCGK F     L  HMR H+     +  +CK C  A   + SL+ H+R+HS ++   
Sbjct: 10  KCEVCGKCFSRKDKLKTHMRCHTG---VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 100 CNESG 104
           C    
Sbjct: 67  CQICP 71

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          CK C        +L  H+R HS    ER  +C+ C  A  ++  L+ H+R H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSD---ERPFKCQICPYASRNSSQLTVHLRSH 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          QC++C ++F     L  H+R H+    E+   C  CG+    +     H ++H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHT---GEKPFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 46  CGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRACNES 103
           C + F    +L  H+R H+    ++  QC+ C +    +  L+ H+R H+ +K  AC+  
Sbjct: 12  CDRRFSQSGSLTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68

Query: 104 G 104
           G
Sbjct: 69  G 69

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 43.9 bits (105), Expect = 4e-06
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
            CK+CGK F+    L  H+  HS     R   C+ CGK       +  H  +H+ +K   
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHS---DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59

Query: 100 CNESG 104
           C   G
Sbjct: 60  CQVCG 64

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          C+ CGK F     +  H   H+    E+  +C+ CGKA   + +L  H R H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTG---EKPHKCQVCGKAFSQSSNLITHSRKH 80

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 404 KEHTCRICLKVFATGQALGGHKRAH 428
           + +TC  C + F + QALGGH   H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER 70
          C  C ++F S +AL GHM  H RR+R R
Sbjct: 9  CSFCKREFRSAQALGGHMNVH-RRDRAR 35

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 346 CQACNKIFCSRRALGGHQRMHSAKRSSL 373
           C  C + F S +ALGGH  +H   R+ L
Sbjct: 9   CSFCKREFRSAQALGGHMNVHRRDRARL 36

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 42 QCKVCGKDFESLKALYGHM-RHHSRRERER------IQCKECGKALLSAKSLSNHMRVHS 94
            K C + F ++  L  H+   H     +        +C   GK+  +   L NH+RVH+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
           K C K F    A+  H+  H      R   C ECGKA + +  L  H  VH
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHG----PRVHVCAECGKAFVESSKLKRHQLVH 57

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQC--KECGKALLSAKSLSNHMRVH 93
           C  CGK F     L  H   H+    E+  QC  + CGK      +L  H+R+H
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHT---GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ 95
          +CKVC + +  +     H     +R  +   C  C K      +++ H+++  +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 43.6 bits (104), Expect = 9e-06
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
            CK CG+ F     L  H R H+    ER   C  C KA      L +H  +HS +K   
Sbjct: 19  ICKFCGRHFTKSYNLLIHERTHTD---ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75

Query: 100 CNESG 104
           C E G
Sbjct: 76  CQECG 80

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHSQ-KLRA 99
            C +C K F     L  H   HS+   E+  +C+ECGK    +++L+ H  +H Q     
Sbjct: 47  TCDICHKAFRRQDHLRDHRYIHSK---EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103

Query: 100 CN 101
             
Sbjct: 104 AA 105

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS 94
           C  CGK F     L  H R H+    E+  +C ECGKA      L NH R+H+
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTG---EKPYKCLECGKAFSQNSGLINHQRIHT 66

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          C  C   F     L  H   H+    E+  +C  CG       +L  H R+H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTG---EKPYRCNICGAQFNRPANLKTHTRIH 68

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
           +C  CGK +   + L  H   +     E+   C  C +       L  HM  H+ +    
Sbjct: 37  ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96

Query: 100 CNESG 104
           C+   
Sbjct: 97  CSSCS 101

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 43  CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHM-RVHS 94
           C VC + F     L  HM  H+    E   +C  C +  +  K L +HM ++HS
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTG---EMPYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS----QK 96
           +C  C K F S   L  H R H+    E+  +C +CGK     ++L  H   +     ++
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHT---GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65

Query: 97  LRACNESG 104
           +  C+   
Sbjct: 66  VFTCSVCQ 73

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 43 CKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          C  C     S  AL  H R H     +R  +C  C        +LS HM+  
Sbjct: 12 CSECSYSCSSKAALRIHERIHC---TDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
           +C  CGK F   K L  H R H+    E+  +C ECGK+     +L  H R H+ +K  A
Sbjct: 51  KCPECGKSFSDKKDLTRHQRTHTG---EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA 107

Query: 100 CNESG 104
           C E G
Sbjct: 108 CPECG 112

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
            C  CGK F     L  H R H+    E+  +C ECGK+    K L+ H R H+ +K   
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTHTG---EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79

Query: 100 CNESG 104
           C E G
Sbjct: 80  CPECG 84

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
            C  CGK F  L  L  H R H+    E+  +C ECGK+     +L  H R H
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTG---EKPYKCPECGKSFSREDNLHTHQRTH 156

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
           +C  CGK F     L+ H R H+    E+  +C ECGK+     +L+ H R H
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTG---EKPYKCPECGKSFSRRDALNVHQRTH 184

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 46  CGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRACNES 103
           CGK F        HM  H      R   C  CGK       L  HM++H+  K   CN  
Sbjct: 15  CGKSFTHKSQRDRHMSMHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

Query: 104 G 104
            
Sbjct: 72  A 72

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVHS-QKLRA 99
            C VCGK F+    L GHM+ H+     +  +C  C K  +   S   H  V S  K   
Sbjct: 39  GCGVCGKKFKMKHHLVGHMKIHT---GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYE 93

Query: 100 CNESG 104
             ++ 
Sbjct: 94  AAKAE 98

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 42  QCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH 93
           QCK C + F     L  H R H+  +    +   C K    +  L  H  +H
Sbjct: 68  QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALL----SAKS-LSNHMRVHS 94
          +   C ++F+S + L  H+         +   C   G +       A+  L  HMR H+
Sbjct: 5  RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 43  CKVCGKDFESLKALYGHMRHHSRRERERI-QCKE--CGKALLSAKSLSNHMRVHS----Q 95
            + CGK F+    L  H   H++   +   +C    C K       L  H +VH+    +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSHTQ---QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62

Query: 96  KLRACNESGAVKSLVLKKKR 115
           K  +C+  G   +L LK   
Sbjct: 63  KDDSCSFVGKTWTLYLKHVA 82

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER-IQCKECGKALLSAKSLSNHMRVH 93
          +C  CGK F     L  H R H+    E+  +C ECGKA +    L  H RVH
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTG---EKPYKCDECGKAFIQRSHLIGHHRVH 69

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 25/163 (15%), Positives = 37/163 (22%), Gaps = 16/163 (9%)

Query: 2   DSAKGDDGHISYDLRENPKKSWKFSSFNHAASASAST--QESQCKVCGKDFESLKALYGH 59
           D+ K        D   N       S        S          +          A  G 
Sbjct: 112 DTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGL 171

Query: 60  MRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRK 119
               S       QC  C   L S   L  H+  H         S  ++  +         
Sbjct: 172 PPTASSGHG--YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHIT-------- 221

Query: 120 RYNFIGS-SSISTLNESLS-SVTEIDQEVVQTAISLMMLSRGV 160
              FI S  +   +  S      +  Q +      L+    G+
Sbjct: 222 --EFISSWQNHPIVQVSADVENKKTAQLLHADTPRLVTWDAGL 262

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 46  CGKDFESLKALYGHMRHHSRRERERIQCKE--CGKALLSAKSLSNHMRVHS-QKLRACNE 102
           CG+ F + + L  H ++    ++    C E  CGK+    K L  HM++HS  +   C  
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73

Query: 103 SG 104
           SG
Sbjct: 74  SG 75

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 31  AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHM 90
            AS   + +  QC++C     SL     H R      R    C  C     S +    H 
Sbjct: 7   GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAVCPYCSLRFFSPELKQEHE 62

Query: 91  RVHSQKLRACNESG 104
                K   C E  
Sbjct: 63  SKCEYKKLTCLECM 76

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 46 CGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH 93
          CG  F     L  H R H+   R   QC++C +A   +  L+ HM+ H
Sbjct: 43 CGWKFARSDELTRHYRKHTG-HR-PFQCQKCDRAFSRSDHLALHMKRH 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.83
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.81
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.8
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.78
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.68
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.68
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.68
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.65
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.63
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.61
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.61
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.61
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.61
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.61
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.6
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.59
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.59
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.58
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.58
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.57
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.56
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.52
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.51
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.49
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.49
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.42
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.4
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.39
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.38
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.38
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.37
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.37
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.37
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.35
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.35
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.32
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.32
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.27
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.25
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.24
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.23
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.23
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.22
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.22
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.21
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.2
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.19
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.19
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.18
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.17
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.17
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.16
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.16
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.15
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.13
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.11
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.11
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.1
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.1
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.09
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.07
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.98
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.98
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.95
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.93
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.91
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.91
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.87
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.84
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.84
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.8
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.75
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.73
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.73
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.71
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.69
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.63
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.62
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.61
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.6
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.6
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.59
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.59
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.59
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.56
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.56
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.55
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.55
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.95
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.54
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.54
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.53
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.53
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.93
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.52
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.52
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.51
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.51
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.89
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.88
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.47
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.46
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.45
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.83
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.44
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.44
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.43
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.42
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.41
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.4
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.39
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.69
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.27
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.07
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.55
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.53
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.43
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.16
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.93
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.78
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.89
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.74
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.59
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.18
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.9
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	90.55
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	90.52
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	89.98
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.77
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	89.59
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.46
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	86.43
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.36
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.38
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	83.55
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	83.21
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	81.4
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.78
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.1
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	80.03

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.2e-38  Score=276.15  Aligned_cols=59  Identities=37%  Similarity=0.632  Sum_probs=43.0

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchh
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQA  420 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~  420 (492)
                      +++|.|++|++.|.+...|..|+++|+                                  +++||.|++|+++|.++..
T Consensus       131 ~~~~~C~~C~~~f~~~~~L~~H~~~H~----------------------------------~~~~~~C~~C~~~f~~~~~  176 (190)
T 2i13_A          131 EKPYKCPECGKSFSREDNLHTHQRTHT----------------------------------GEKPYKCPECGKSFSRRDA  176 (190)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH----------------------------------CCCCEECTTTCCEESSHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHhcC----------------------------------CCCCeECCCCCCccCCHHH
Confidence            345666666666666666666666665                                  8899999999999999999


Q ss_pred             hhhhhhhcccCCC
Q 039095          421 LGGHKRAHLVKNL  433 (492)
Q Consensus       421 L~~H~r~H~~~~~  433 (492)
                      |..|+++|+|+++
T Consensus       177 L~~H~~~H~~~k~  189 (190)
T 2i13_A          177 LNVHQRTHTGKKT  189 (190)
T ss_dssp             HHHHHTTC-----
T ss_pred             HHHHHHhcCCCCC
Confidence            9999999998764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=9.3e-34  Score=246.80  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCCcccc--CCCCcccccccchhhhhhccCCCCcccc--ccccccccChhHHHhhhhccCcccccccccc--
Q 039095            1 MDSAKGDDGHISYDL--RENPKKSWKFSSFNHAASASASTQESQC--KVCGKDFESLKALYGHMRHHSRRERERIQCK--   74 (492)
Q Consensus         1 ~~~~~~~~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~--   74 (492)
                      ||......+.++|.|  ++|++.|.+...|..|++.|.++++|.|  ++|++.|.+...|.+|+++|+++  ++|.|+  
T Consensus         1 ~~~~~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~   78 (190)
T 1tf6_A            1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE--KNFTCDSD   78 (190)
T ss_dssp             ---------CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTC--CCEECCSS
T ss_pred             CccccccCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCC--CceeCCCC
Confidence            566667778999999  7999999999999999999999999999  88999999999999999999999  899999  


Q ss_pred             cchhhhcChhhHhhhh-hhcc--cCcccc--cccCchhhhHHhhhhhccc
Q 039095           75 ECGKALLSAKSLSNHM-RVHS--QKLRAC--NESGAVKSLVLKKKRSKRK  119 (492)
Q Consensus        75 ~C~k~F~~~~~L~~H~-~~H~--~k~~~C--~~C~~~f~~~~~~~~h~~~  119 (492)
                      .|++.|.+...|..|+ +.|.  .++|.|  +.|++.|.....|..|++.
T Consensus        79 ~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A           79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             SCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH
Confidence            8999999999999999 5673  367888  7788777777777777653

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=1e-31  Score=233.86  Aligned_cols=93  Identities=30%  Similarity=0.478  Sum_probs=58.1

Q ss_pred             ccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           25 FSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        25 ~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      ...|..|++.|.++++|.|++|++.|.+...|..|+++|+++  ++|.|++|++.|.+...|..|+++|++ ++|.|++|
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   83 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE--KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC   83 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC-----CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTT
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCC--CCccCCCcCchhCCHHHHHHHHHhcCCCCCccCccc
Confidence            356788889999999999999999999999999999999998  899999999999999999999999885 88999999


Q ss_pred             CchhhhHHhhhhhccc
Q 039095          104 GAVKSLVLKKKRSKRK  119 (492)
Q Consensus       104 ~~~f~~~~~~~~h~~~  119 (492)
                      ++.|.....|..|+..
T Consensus        84 ~~~f~~~~~l~~H~~~   99 (190)
T 2i13_A           84 GKSFSQRANLRAHQRT   99 (190)
T ss_dssp             CCEESCHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHh
Confidence            9888888887777753

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.3e-28  Score=206.77  Aligned_cols=83  Identities=19%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             CCccccCCCCcccccccchhhhhh---ccCCCCccccccc-----cccccChhHHHhhhhccCccccccccccc--chhh
Q 039095           10 HISYDLRENPKKSWKFSSFNHAAS---ASASTQESQCKVC-----GKDFESLKALYGHMRHHSRRERERIQCKE--CGKA   79 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~---~H~~~~~~~C~~C-----~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C~k~   79 (492)
                      +.+|.|+.|++.|.+...|..|++   +|.++++|.|++|     ++.|.+...|.+|+++|+++  ++|.|++  |++.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~   78 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKS   78 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC--CCCCCCSTTCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC--CCccCCCCCCCCc
Confidence            346788888888888888888877   6777888877643     37888888888888888877  7888875  8888


Q ss_pred             hcChhhHhhhhhhcc
Q 039095           80 LLSAKSLSNHMRVHS   94 (492)
Q Consensus        80 F~~~~~L~~H~~~H~   94 (492)
                      |.+...|..|+++|+
T Consensus        79 f~~~~~l~~H~~~h~   93 (155)
T 2gli_A           79 YSRLENLKTHLRSHT   93 (155)
T ss_dssp             CSSHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHcC
Confidence            888888888887764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=1.3e-27  Score=207.91  Aligned_cols=82  Identities=20%  Similarity=0.348  Sum_probs=74.5

Q ss_pred             cCCCCcccc--ccccccccChhHHHhhhhccCccccccccc--ccchhhhcChhhHhhhhhhccc-Cccccc--ccCchh
Q 039095           35 SASTQESQC--KVCGKDFESLKALYGHMRHHSRRERERIQC--KECGKALLSAKSLSNHMRVHSQ-KLRACN--ESGAVK  107 (492)
Q Consensus        35 H~~~~~~~C--~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C--~~C~k~F~~~~~L~~H~~~H~~-k~~~C~--~C~~~f  107 (492)
                      ....++|.|  +.|++.|.+...|..|+++|+++  ++|.|  ++|++.|.+...|..|+++|++ ++|.|+  .|++.|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   84 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGE--KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF   84 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCC--CSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEE
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCC--CCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCcc
Confidence            456789999  78999999999999999999999  89999  8899999999999999999996 899999  899999


Q ss_pred             hhHHhhhhhcc
Q 039095          108 SLVLKKKRSKR  118 (492)
Q Consensus       108 ~~~~~~~~h~~  118 (492)
                      .....|..|+.
T Consensus        85 ~~~~~l~~H~~   95 (190)
T 1tf6_A           85 TTKANMKKHFN   95 (190)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99988888873

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=6.8e-28  Score=194.35  Aligned_cols=67  Identities=22%  Similarity=0.365  Sum_probs=61.6

Q ss_pred             cchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           26 SSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        26 ~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      ..+.+|.++|.|+++|+|++|+++|.+.+.|.+|+++|+++  +||+|++|+++|.+...|..|+++|+
T Consensus         8 ~h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~   74 (133)
T 2lt7_A            8 KHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE--KKYPCRYCEKVFPLAEYRTKHEIHHT   74 (133)
T ss_dssp             CCSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCC--SCEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             HHHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCC--CCeeCCccCeecccccchhhhccccC
Confidence            34678888999999999999999999999999999999999  89999999999999999999999885

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.1e-25  Score=181.24  Aligned_cols=56  Identities=27%  Similarity=0.526  Sum_probs=50.3

Q ss_pred             CCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhc
Q 039095           36 ASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        36 ~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H   93 (492)
                      +++++|.|++|++.|.+...|.+|+++|+++  ++|.|++|++.|.+...|..|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~~   58 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGE--KPFECPKCGKCYFRKENLLEHEARN   58 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSC--CSCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCC--CCeECCCCCchhcCHHHHHHHHhhh
Confidence            5678899999999999999999999999988  8999999999999999999998865

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=1.1e-26  Score=187.15  Aligned_cols=100  Identities=21%  Similarity=0.340  Sum_probs=95.2

Q ss_pred             CCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhH
Q 039095            7 DDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSL   86 (492)
Q Consensus         7 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L   86 (492)
                      ++|+++|.|++|+++|.+...|..|+++|++++||+|++|++.|.+.+.|..|+++|+++  +||.|++||++|.+...|
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE--RRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTC--CCEEESSSCCEESSHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCC--ccccCCCCCCCcCCHHHH
Confidence            579999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             hhhhhhccc-------CcccccccCchhh
Q 039095           87 SNHMRVHSQ-------KLRACNESGAVKS  108 (492)
Q Consensus        87 ~~H~~~H~~-------k~~~C~~C~~~f~  108 (492)
                      ..|+++|++       ++|+|.+|++.|.
T Consensus        95 ~~H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           95 SSHIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             HHHHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             HHHhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            999999873       4699999998775

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=9.7e-25  Score=175.69  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             CCCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhc---cCcccccccccccchhhhcC
Q 039095            6 GDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRH---HSRRERERIQCKECGKALLS   82 (492)
Q Consensus         6 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~---H~~~~~k~y~C~~C~k~F~~   82 (492)
                      +..|.++|.|++|++.|.+...|..|++.|.+++||.|++|++.|.+...|.+|++.   |.++  ++|.|++|++.|.+
T Consensus         1 gs~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~--~~~~C~~C~~~f~~   78 (124)
T 2dlq_A            1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE--QVFTCSVCQETFRR   78 (124)
T ss_dssp             CCCCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCC--CCEECSSSCCEESS
T ss_pred             CCCCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCC--CCeECCCCCCccCC
Confidence            356889999999999999999999999999999999999999999999999999985   5666  89999999999999


Q ss_pred             hhhHhhhhhhccc-CcccccccCchhhhHHhhhhhccccc
Q 039095           83 AKSLSNHMRVHSQ-KLRACNESGAVKSLVLKKKRSKRKRY  121 (492)
Q Consensus        83 ~~~L~~H~~~H~~-k~~~C~~C~~~f~~~~~~~~h~~~~~  121 (492)
                      ...|..|+++|++ ++|.|++|++.|.....|..|++..+
T Consensus        79 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            9999999999996 89999999999999999999987543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=181.49  Aligned_cols=83  Identities=22%  Similarity=0.392  Sum_probs=44.5

Q ss_pred             CCccccCCCCcccccccchhhhhhc-cCCCCc--------cccccccccccChhHHHhhhhccCccccccccccc--chh
Q 039095           10 HISYDLRENPKKSWKFSSFNHAASA-SASTQE--------SQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE--CGK   78 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C~k   78 (492)
                      ..+|.|.+|++.|.+...|..|++. |.+..+        |.|.+|++.|.+...|..|+++|+++  ++|.|++  |++
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~  100 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE--KPFPCPFPGCGK  100 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC--CSEECSCTTTCC
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC--CcccCCcCCCCC
Confidence            3445555555555555555555554 444433        45555555555555555555555555  5555555  555


Q ss_pred             hhcChhhHhhhhhhcc
Q 039095           79 ALLSAKSLSNHMRVHS   94 (492)
Q Consensus        79 ~F~~~~~L~~H~~~H~   94 (492)
                      .|.+...|..|+++|+
T Consensus       101 ~f~~~~~L~~H~~~h~  116 (155)
T 2rpc_A          101 IFARSENLKIHKRTHT  116 (155)
T ss_dssp             EESCHHHHHHHHTTTC
T ss_pred             ccCCHHHHHHHHHhhC
Confidence            5555555555555443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=8.3e-25  Score=174.67  Aligned_cols=57  Identities=26%  Similarity=0.553  Sum_probs=45.1

Q ss_pred             CCCCcccccc--ccccccChhHHHhhhhccCcccccccccc--cchhhhcChhhHhhhhhhcc
Q 039095           36 ASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCK--ECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        36 ~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~--~C~k~F~~~~~L~~H~~~H~   94 (492)
                      +++++|.|.+  |++.|.+...|..|+++|+++  ++|.|+  .|++.|.+...|..|+++|+
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~   62 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE--KPYQCDFKDCERRFSRSDQLKRHQRRHT   62 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT--CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC--CCccCCCCCCcCccCCHHHHHHHHHHcC
Confidence            4677888876  888888888888888888877  788887  68888888888888887764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.1e-24  Score=174.07  Aligned_cols=111  Identities=20%  Similarity=0.324  Sum_probs=105.6

Q ss_pred             CCCCccccCC--CCcccccccchhhhhhccCCCCccccc--cccccccChhHHHhhhhccCcccccccccccchhhhcCh
Q 039095            8 DGHISYDLRE--NPKKSWKFSSFNHAASASASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSA   83 (492)
Q Consensus         8 ~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~   83 (492)
                      .++++|.|.+  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|+++|+++  ++|.|++|++.|.+.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~   79 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV--KPFQCKTCQRKFSRS   79 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC--CCEECTTTCCEESCH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC--CCccCCccCchhCCH
Confidence            5788999997  999999999999999999999999999  7999999999999999999999  899999999999999


Q ss_pred             hhHhhhhhhccc-Ccccc--cccCchhhhHHhhhhhcccc
Q 039095           84 KSLSNHMRVHSQ-KLRAC--NESGAVKSLVLKKKRSKRKR  120 (492)
Q Consensus        84 ~~L~~H~~~H~~-k~~~C--~~C~~~f~~~~~~~~h~~~~  120 (492)
                      ..|..|+++|++ ++|.|  +.|++.|.....|..|++.|
T Consensus        80 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999996 89999  89999999999999998653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=3.8e-24  Score=172.12  Aligned_cols=54  Identities=31%  Similarity=0.585  Sum_probs=35.2

Q ss_pred             CCccccc--cccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           38 TQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        38 ~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      .++|.|+  .|++.|.+...|..|+++| ++  ++|.|++|++.|.+...|..|+++|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~--~~~~C~~C~~~f~~~~~l~~H~~~h~   58 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GP--RVHVCAECGKAFVESSKLKRHQLVHT   58 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SC--CCEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CC--CCeECCCCCchhCCHHHHHHHHHHcC
Confidence            4566666  6777777777777776666 44  56777777777777777777766653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=2.9e-23  Score=174.02  Aligned_cols=81  Identities=25%  Similarity=0.378  Sum_probs=61.1

Q ss_pred             cCCCCccccccccccccChhHHHhhhhc-cCcccccc--------cccccchhhhcChhhHhhhhhhccc-Ccccccc--
Q 039095           35 SASTQESQCKVCGKDFESLKALYGHMRH-HSRRERER--------IQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE--  102 (492)
Q Consensus        35 H~~~~~~~C~~C~k~F~~~~~L~~H~r~-H~~~~~k~--------y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~--  102 (492)
                      +.+..+|.|.+|++.|.+...|.+|+++ |.++  .+        |.|++|++.|.+...|..|+++|++ ++|.|.+  
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~--~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   97 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG--PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG   97 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCC--TTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTT
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCC--cccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCC
Confidence            4567889999999999999999999998 6665  44        8999999999999999999998864 4444444  


Q ss_pred             cCchhhhHHhhhhhc
Q 039095          103 SGAVKSLVLKKKRSK  117 (492)
Q Consensus       103 C~~~f~~~~~~~~h~  117 (492)
                      |++.|.....|..|+
T Consensus        98 C~~~f~~~~~L~~H~  112 (155)
T 2rpc_A           98 CGKIFARSENLKIHK  112 (155)
T ss_dssp             TCCEESCHHHHHHHH
T ss_pred             CCCccCCHHHHHHHH
Confidence            444444444444433

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=2.7e-23  Score=167.14  Aligned_cols=111  Identities=19%  Similarity=0.246  Sum_probs=101.9

Q ss_pred             CCCccccC--CCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc--chhhhcChh
Q 039095            9 GHISYDLR--ENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE--CGKALLSAK   84 (492)
Q Consensus         9 ~~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C~k~F~~~~   84 (492)
                      +.++|.|+  .|++.|.+...|..|++.| +.++|.|.+|++.|.+...|..|+++|+++  ++|.|++  |++.|.+..
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~   78 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLDF   78 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCC--CCEECCSTTCCCEESCHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCeeCCCCCCcCccCCHH
Confidence            46789999  9999999999999999999 899999999999999999999999999999  8999986  999999999


Q ss_pred             hHhhhhhhccc-Cccccc--ccCchhhhHHhhhhhcccccc
Q 039095           85 SLSNHMRVHSQ-KLRACN--ESGAVKSLVLKKKRSKRKRYN  122 (492)
Q Consensus        85 ~L~~H~~~H~~-k~~~C~--~C~~~f~~~~~~~~h~~~~~~  122 (492)
                      .|..|+++|++ ++|.|+  .|++.|.....|..|++.+..
T Consensus        79 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             HHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            99999999996 899996  599999999999999887643

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=7.7e-22  Score=153.72  Aligned_cols=93  Identities=19%  Similarity=0.338  Sum_probs=87.6

Q ss_pred             CCCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhh
Q 039095            6 GDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKS   85 (492)
Q Consensus         6 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~   85 (492)
                      ...+.++|.|.+|++.|.+...|..|++.|.++++|.|.+|++.|.....|.+|+++|+++  ++|.|++|++.|.+...
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~   88 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE--KPFKCQECGKGFCQSRT   88 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCC--CTTSCSSSCCCCSSHHH
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCC--CCeECCCcCCcccCHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999  89999999999999999


Q ss_pred             Hhhhhhhccc-Ccccc
Q 039095           86 LSNHMRVHSQ-KLRAC  100 (492)
Q Consensus        86 L~~H~~~H~~-k~~~C  100 (492)
                      |..|+++|++ ++|.+
T Consensus        89 L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           89 LAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHhCCCCCCcC
Confidence            9999999996 77754

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=4.9e-22  Score=166.55  Aligned_cols=114  Identities=17%  Similarity=0.242  Sum_probs=105.2

Q ss_pred             CCCCCCccccCCC-----CcccccccchhhhhhccCCCCcccccc--ccccccChhHHHhhhhccCccccccccccc--c
Q 039095            6 GDDGHISYDLREN-----PKKSWKFSSFNHAASASASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCKE--C   76 (492)
Q Consensus         6 ~~~~~~~~~C~~C-----~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C   76 (492)
                      .+.+.++|.|++|     ++.|.+...|..|++.|.+++||.|.+  |++.|.+...|..|+++|+++  ++|.|++  |
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C  105 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--KPYMCEHEGC  105 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC--CCEECCSTTC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCC--CCeeCCCCCC
Confidence            3567889998753     499999999999999999999999986  999999999999999999999  8999999  9


Q ss_pred             hhhhcChhhHhhhh-hhccc-Ccccccc--cCchhhhHHhhhhhccccc
Q 039095           77 GKALLSAKSLSNHM-RVHSQ-KLRACNE--SGAVKSLVLKKKRSKRKRY  121 (492)
Q Consensus        77 ~k~F~~~~~L~~H~-~~H~~-k~~~C~~--C~~~f~~~~~~~~h~~~~~  121 (492)
                      ++.|.+...|..|+ ++|.+ ++|.|++  |++.|.....|..|++.++
T Consensus       106 ~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            99999999999999 78986 8999998  9999999999999988764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=2.1e-21  Score=148.31  Aligned_cols=87  Identities=18%  Similarity=0.272  Sum_probs=83.8

Q ss_pred             CCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhH
Q 039095            7 DDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSL   86 (492)
Q Consensus         7 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L   86 (492)
                      ..++++|.|.+|++.|.+...|..|++.|.++++|.|.+|++.|.....|.+|+++|+++  ++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE--RPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCC--CCEECSSSSCEESSHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCC--CCccCCCCCCccCCHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999  899999999999999999


Q ss_pred             hhhhhhccc
Q 039095           87 SNHMRVHSQ   95 (492)
Q Consensus        87 ~~H~~~H~~   95 (492)
                      ..|+++|++
T Consensus        81 ~~H~~~h~~   89 (96)
T 2dmd_A           81 TVHLRSHTG   89 (96)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHHHhcC
Confidence            999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=4.7e-21  Score=145.97  Aligned_cols=90  Identities=23%  Similarity=0.413  Sum_probs=83.7

Q ss_pred             CCCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhh
Q 039095            6 GDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKS   85 (492)
Q Consensus         6 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~   85 (492)
                      +..++++|.|.+|++.|.+...|..|++.|.++++|.|.+|++.|.+...|..|+++|+++.+++|.|++|++.|.+...
T Consensus         1 gs~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~   80 (95)
T 2yt9_A            1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDH   80 (95)
T ss_dssp             CCCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHH
T ss_pred             CCCCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHH
Confidence            45688999999999999999999999999999999999999999999999999999999863379999999999999999


Q ss_pred             Hhhhhh-hccc
Q 039095           86 LSNHMR-VHSQ   95 (492)
Q Consensus        86 L~~H~~-~H~~   95 (492)
                      |..|++ +|.+
T Consensus        81 L~~H~~~~H~~   91 (95)
T 2yt9_A           81 LNGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHhcCC
Confidence            999996 7875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.82  E-value=1.4e-21  Score=144.57  Aligned_cols=82  Identities=26%  Similarity=0.433  Sum_probs=79.1

Q ss_pred             ccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhh
Q 039095           12 SYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMR   91 (492)
Q Consensus        12 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~   91 (492)
                      +|.|.+|++.|.+...|..|++.|.++++|.|.+|++.|.+...|.+|+++|+++  ++|.|++|++.|.+...|..|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--KPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTC--CCEECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCC--CCCcCCCcchhhCChHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999  89999999999999999999999


Q ss_pred             hccc
Q 039095           92 VHSQ   95 (492)
Q Consensus        92 ~H~~   95 (492)
                      +|+|
T Consensus        79 ~H~g   82 (82)
T 2kmk_A           79 KHTG   82 (82)
T ss_dssp             HHC-
T ss_pred             hhCC
Confidence            9975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.82  E-value=2.6e-21  Score=145.82  Aligned_cols=85  Identities=18%  Similarity=0.409  Sum_probs=80.7

Q ss_pred             CCCccccC--CCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhH
Q 039095            9 GHISYDLR--ENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSL   86 (492)
Q Consensus         9 ~~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L   86 (492)
                      |+++|.|+  .|++.|.+...|..|++.|.++++|.|.+|++.|.+...|..|+++|+++  ++|.|++|++.|.+...|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDER   78 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC--CCEECTTTCCEESSHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCC--CCccCCCCCchhCCHHHH
Confidence            46899998  69999999999999999999999999999999999999999999999999  899999999999999999


Q ss_pred             hhhhhhccc
Q 039095           87 SNHMRVHSQ   95 (492)
Q Consensus        87 ~~H~~~H~~   95 (492)
                      ..|+++|++
T Consensus        79 ~~H~~~H~~   87 (90)
T 1a1h_A           79 KRHTKIHLR   87 (90)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHhcc
Confidence            999999986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=6.6e-21  Score=145.50  Aligned_cols=92  Identities=16%  Similarity=0.265  Sum_probs=77.1

Q ss_pred             CCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCC
Q 039095          338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFAT  417 (492)
Q Consensus       338 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~  417 (492)
                      +.++++|.|++|++.|.+...|..|+++|+++++|.|..|+..+.....+..      |+++|++++||.|++|++.|.+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNK------HLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHH------HHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHH------HHHHhCCCCCccCCCCCCccCC
Confidence            3567788888888888888888888888888888888888877755444333      7778889999999999999999


Q ss_pred             chhhhhhhhhcccCCCCC
Q 039095          418 GQALGGHKRAHLVKNLDN  435 (492)
Q Consensus       418 ~~~L~~H~r~H~~~~~~~  435 (492)
                      ...|..|+++|+++..++
T Consensus        77 ~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           77 SSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             HHHHHHHHTTCCSCCCCC
T ss_pred             HHHHHHHHHHhcCCCCCC
Confidence            999999999999987663

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.81  E-value=4.5e-21  Score=129.82  Aligned_cols=58  Identities=28%  Similarity=0.533  Sum_probs=55.4

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchh
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQA  420 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~  420 (492)
                      +|||+|++||+.|.+.+.|..|+++|+                                  |+|||.|++||++|.++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht----------------------------------~ekp~~C~~C~k~F~~~~~   47 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL----------------------------------GYRPRSCPECGKCFRDQSE   47 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH----------------------------------TCCCEECTTTCCEESSHHH
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC----------------------------------CCcCeECCCCCCCcCCHHH
Confidence            789999999999999999999999999                                  8899999999999999999


Q ss_pred             hhhhhhhcccCC
Q 039095          421 LGGHKRAHLVKN  432 (492)
Q Consensus       421 L~~H~r~H~~~~  432 (492)
                      |.+|+++|+|+.
T Consensus        48 L~~H~~~Htgep   59 (60)
T 4gzn_C           48 VNRHLKVHQNKP   59 (60)
T ss_dssp             HHHHGGGGSCC-
T ss_pred             HHHHhCccCCCC
Confidence            999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.81  E-value=6.6e-21  Score=129.01  Aligned_cols=58  Identities=29%  Similarity=0.602  Sum_probs=48.7

Q ss_pred             CCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcccCc
Q 039095           38 TQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKL   97 (492)
Q Consensus        38 ~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~   97 (492)
                      |+||+|.+|++.|...+.|.+|+++|+++  +||.|++||++|...++|.+|+++|+|+|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~e--kp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGY--RPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTC--CCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCC--cCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            67888888888888888888888888888  88888888888888888888888888764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.3e-20  Score=146.87  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=84.7

Q ss_pred             CCCCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChh
Q 039095            5 KGDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAK   84 (492)
Q Consensus         5 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~   84 (492)
                      ..+.++++|.|.+|++.|.+...|..|++.|  +++|.|.+|++.|.....|.+|++ |+++  ++|+|++|++.|.+..
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~--~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEY--KKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCST--GGGEEGGGTEECSSHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCC--CCccCccccchhCCHH
Confidence            4567889999999999999999999999998  579999999999999999999996 9999  8999999999999999


Q ss_pred             hHhhhhh-hccc-Cccccc
Q 039095           85 SLSNHMR-VHSQ-KLRACN  101 (492)
Q Consensus        85 ~L~~H~~-~H~~-k~~~C~  101 (492)
                      .|+.|++ +|.+ ++|.|.
T Consensus        84 ~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            9999997 7875 788765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=144.36  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=86.1

Q ss_pred             CCCCCcccc-CCCCCCceecccCccccccchhhhhhccc--CCCCCCCC-CCcCCCCC--CCCcccchhhhhhhhccccC
Q 039095          328 NASDYDVFD-DPQKESEIRCQACNKIFCSRRALGGHQRM--HSAKRSSL-PVKTTMFT--ETEPHSKLVKLECIEDLMQR  401 (492)
Q Consensus       328 ~~~~l~~h~-~~~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~-C~~C~~~~--~~~~~~~~~~~~~~h~~~H~  401 (492)
                      ....|..|. .|+++++|.|++|++.|.+...|..|+++  |.+++++. |..|+..+  .....+..      |+++|+
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~------H~~~H~   76 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE------MEGKED   76 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCC------CCCSCC
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHH------HhhccC
Confidence            356677765 78999999999999999999999999999  88888765 99999776  55444444      789999


Q ss_pred             CCCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          402 GNKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      +++||.|++|++.|.++..|.+|+++|+.....
T Consensus        77 ~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~  109 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV  109 (115)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCS
T ss_pred             CCcceECCCCCCccCCHHHHHHHHHHhCCcccC
Confidence            999999999999999999999999998765443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.2e-20  Score=147.87  Aligned_cols=88  Identities=25%  Similarity=0.419  Sum_probs=84.0

Q ss_pred             CCCCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChh
Q 039095            5 KGDDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAK   84 (492)
Q Consensus         5 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~   84 (492)
                      .++.++++|.| +|++.|.+...|..|++.|.++++|.|.+|++.|.+...|.+|+++|+++  ++|.|++|++.|.+..
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~   79 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI--KPYECNICAKRFMWRD   79 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCC--CCEECSSSCCEESCHH
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCC--CCeeCCCCcchhcCHH
Confidence            35788999999 99999999999999999999999999999999999999999999999999  8999999999999999


Q ss_pred             hHhhhhhhccc
Q 039095           85 SLSNHMRVHSQ   95 (492)
Q Consensus        85 ~L~~H~~~H~~   95 (492)
                      .|..|+++|+.
T Consensus        80 ~l~~H~~~~~~   90 (110)
T 2csh_A           80 SFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHccc
Confidence            99999999863

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=4e-20  Score=143.94  Aligned_cols=91  Identities=21%  Similarity=0.320  Sum_probs=80.9

Q ss_pred             CCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCC
Q 039095          338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFAT  417 (492)
Q Consensus       338 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~  417 (492)
                      ....++|.|++|++.|.+...|..|+++|+++++|.|.+|+..+.....+..      |+++|++++||.|++|++.|.+
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD------HRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHH------HGGGSCCCCTTSCSSSCCCCSS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHH------HHHHhCCCCCeECCCcCCcccC
Confidence            3467789999999999999999999999999999999999988866554433      7889999999999999999999


Q ss_pred             chhhhhhhhhcccCCCC
Q 039095          418 GQALGGHKRAHLVKNLD  434 (492)
Q Consensus       418 ~~~L~~H~r~H~~~~~~  434 (492)
                      ...|.+|+++|+++++.
T Consensus        86 ~~~L~~H~~~H~~~~~~  102 (106)
T 2ee8_A           86 SRTLAVHKTLHMQTSSP  102 (106)
T ss_dssp             HHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999998776

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.78  E-value=7.3e-20  Score=140.82  Aligned_cols=90  Identities=19%  Similarity=0.267  Sum_probs=83.7

Q ss_pred             CCCCCCCCccccCC--CCcccccccchhhhhhccCCCCccccc--cccccccChhHHHhhhhccCcccccccccccchhh
Q 039095            4 AKGDDGHISYDLRE--NPKKSWKFSSFNHAASASASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKECGKA   79 (492)
Q Consensus         4 ~~~~~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~   79 (492)
                      .......++|.|..  |++.|.+...|..|++.|.++++|.|.  .|++.|.....|.+|+++|+++  ++|.|++|++.
T Consensus         7 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~   84 (100)
T 2ebt_A            7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA--KPFQCGVCNRS   84 (100)
T ss_dssp             CCCCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSC--CSCBCSSSCCB
T ss_pred             CcccccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC--CCeECCCCcCc
Confidence            34445678899997  999999999999999999999999996  6999999999999999999999  89999999999


Q ss_pred             hcChhhHhhhhhhccc
Q 039095           80 LLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        80 F~~~~~L~~H~~~H~~   95 (492)
                      |.+...|..|+++|++
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            9999999999999964

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=6.6e-20  Score=144.96  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             ccchhhhhhccCCCCccccccccccccChhHHHhhhhc--cCccccccc-ccccchhhh--cChhhHhhhhhhccc-Ccc
Q 039095           25 FSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRH--HSRRERERI-QCKECGKAL--LSAKSLSNHMRVHSQ-KLR   98 (492)
Q Consensus        25 ~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~--H~~~~~k~y-~C~~C~k~F--~~~~~L~~H~~~H~~-k~~   98 (492)
                      ...|..|+++|++++||.|.+|++.|.+...|..|+++  |.++  ++| .|++|++.|  .....|..|+++|++ ++|
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~--~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~   81 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD--DNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL   81 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBC--SCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcccc--CCCccCCCCCcccccccHHHHHHHhhccCCCcce
Confidence            34566777777777777777777777777777777776  6555  443 377777766  677777777777764 677


Q ss_pred             cccccCchhhhHHhhhhhccccccc
Q 039095           99 ACNESGAVKSLVLKKKRSKRKRYNF  123 (492)
Q Consensus        99 ~C~~C~~~f~~~~~~~~h~~~~~~~  123 (492)
                      .|++|++.|.....|..|++.++..
T Consensus        82 ~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCCc
Confidence            7777777777777777776665443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=2.5e-20  Score=140.35  Aligned_cols=87  Identities=22%  Similarity=0.367  Sum_probs=73.2

Q ss_pred             CCCceecc--cCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCC
Q 039095          340 KESEIRCQ--ACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFAT  417 (492)
Q Consensus       340 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~  417 (492)
                      ++++|.|+  .|++.|.+...|..|+++|+++++|.|..|+..+.....+..      |+++|++++||.|++|++.|.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~~   74 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT------HIRTHTGEKPFACDICGRKFAR   74 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHH------HHHHHHCCCCEECTTTCCEESS
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHH------HHHHcCCCCCccCCCCCchhCC
Confidence            35789998  599999999999999999999999999999977765544433      7788889999999999999999


Q ss_pred             chhhhhhhhhcccCC
Q 039095          418 GQALGGHKRAHLVKN  432 (492)
Q Consensus       418 ~~~L~~H~r~H~~~~  432 (492)
                      +..|.+|+++|++++
T Consensus        75 ~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           75 SDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHHGGGGC--
T ss_pred             HHHHHHHHHHhcccC
Confidence            999999999999865

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.77  E-value=1.4e-19  Score=136.01  Aligned_cols=84  Identities=23%  Similarity=0.362  Sum_probs=79.3

Q ss_pred             CCCccccCC--CCcccccccchhhhhhccCCCCccccc--cccccccChhHHHhhhhccCcccccccccccchhhhcChh
Q 039095            9 GHISYDLRE--NPKKSWKFSSFNHAASASASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAK   84 (492)
Q Consensus         9 ~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~   84 (492)
                      +..+|.|++  |++.|.+...|..|++.|.++++|.|+  .|++.|.....|.+|+++|+++  ++|.|++|++.|.+..
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~   79 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQKCDRAFSRSD   79 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCC--CCEECSSSSCEESSHH
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC--CCccCCCCCcccCCHH
Confidence            457899999  999999999999999999999999997  5999999999999999999999  8999999999999999


Q ss_pred             hHhhhhhhcc
Q 039095           85 SLSNHMRVHS   94 (492)
Q Consensus        85 ~L~~H~~~H~   94 (492)
                      .|..|+++|.
T Consensus        80 ~l~~H~~~H~   89 (89)
T 2wbs_A           80 HLALHMKRHF   89 (89)
T ss_dssp             HHHHHGGGGC
T ss_pred             HHHHHHHhhC
Confidence            9999999984

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=3e-20  Score=137.27  Aligned_cols=82  Identities=26%  Similarity=0.415  Sum_probs=70.2

Q ss_pred             ceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhh
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALG  422 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~  422 (492)
                      ||.|++|++.|.+...|..|+++|++++||.|..|+..+.....+.      .|+++|++++||.|++|++.|.+...|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~------~H~~~h~~~~~~~C~~C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK------KHTFIHTGEKPHKCQVCGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHH------HHHHHHHTCCCEECTTTSCEESSHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHH------HHHHHhcCCCCCcCCCcchhhCChHHHH
Confidence            5888999999999999999988888888999999887775544443      3778888999999999999999999999


Q ss_pred             hhhhhccc
Q 039095          423 GHKRAHLV  430 (492)
Q Consensus       423 ~H~r~H~~  430 (492)
                      +|+++|+|
T Consensus        75 ~H~~~H~g   82 (82)
T 2kmk_A           75 THSRKHTG   82 (82)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHhhCC
Confidence            99999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.9e-19  Score=136.95  Aligned_cols=88  Identities=23%  Similarity=0.331  Sum_probs=71.5

Q ss_pred             CCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCC--CcccCCccccccC
Q 039095          339 QKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGN--KEHTCRICLKVFA  416 (492)
Q Consensus       339 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~--kpf~C~~C~k~F~  416 (492)
                      .++++|.|++|++.|.+...|..|+++|+++++|.|..|+..+.....+..      |+++|+++  +||.|++|++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSY------HVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHH------HHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHH------HHHHhcCCCCCceECCCccchhC
Confidence            467788888888888888888888888888888888888877655444433      67777787  9999999999999


Q ss_pred             Cchhhhhhhh-hcccCC
Q 039095          417 TGQALGGHKR-AHLVKN  432 (492)
Q Consensus       417 ~~~~L~~H~r-~H~~~~  432 (492)
                      ++..|..|++ +|.++.
T Consensus        77 ~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           77 RPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SHHHHHHHHHHTSCCCS
T ss_pred             CHHHHHHHHHHhcCCCC
Confidence            9999999986 787643

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=7.9e-20  Score=143.24  Aligned_cols=90  Identities=19%  Similarity=0.190  Sum_probs=81.0

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .|+++++|.| .|++.|.+...|..|+++|+++++|.|..|+..+.....+..      |+++|++++||.|++|++.|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG------HMKIHTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHH------HHTTTCCCCCEECSSSCCEES
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHH------HHHHcCCCCCeeCCCCcchhc
Confidence            5788999999 999999999999999999999999999999988876655544      888999999999999999999


Q ss_pred             CchhhhhhhhhcccCCC
Q 039095          417 TGQALGGHKRAHLVKNL  433 (492)
Q Consensus       417 ~~~~L~~H~r~H~~~~~  433 (492)
                      ++..|.+|+++|+....
T Consensus        77 ~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           77 WRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcccccc
Confidence            99999999999986543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.75  E-value=1e-19  Score=136.20  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             CCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhh
Q 039095           10 HISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH   89 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H   89 (492)
                      +++|.|.+|++.|.+...|..|+++|.+++||.|++|++.|.....|.+|+++|++   .+|.|+.|++.|.+...|..|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHH
Confidence            46899999999999999999999999999999999999999999999999998885   589999999999999999999


Q ss_pred             hhhcc
Q 039095           90 MRVHS   94 (492)
Q Consensus        90 ~~~H~   94 (492)
                      ++.++
T Consensus        78 ~~~~h   82 (88)
T 1llm_C           78 VARLK   82 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.1e-19  Score=138.32  Aligned_cols=90  Identities=17%  Similarity=0.301  Sum_probs=78.7

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .|+++++|+|++|++.|.+...|..|+++|  +++|.|..|+..+.....+..      |++ |++++||.|++|++.|.
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~------H~~-H~~~~~~~C~~C~~~f~   80 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE------HES-KCEYKKLTCLECMRTFK   80 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHH------HHH-HCSTGGGEEGGGTEECS
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHH------HHH-cCCCCCccCccccchhC
Confidence            578899999999999999999999999999  489999999988866544333      664 99999999999999999


Q ss_pred             Cchhhhhhhh-hcccCCCCC
Q 039095          417 TGQALGGHKR-AHLVKNLDN  435 (492)
Q Consensus       417 ~~~~L~~H~r-~H~~~~~~~  435 (492)
                      ++..|.+|++ +|.++++..
T Consensus        81 ~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           81 SSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             SHHHHHHHHHHTSCCCCCCC
T ss_pred             CHHHHHHHHHHHcCCCCCCC
Confidence            9999999997 888877763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.73  E-value=1.6e-19  Score=135.04  Aligned_cols=84  Identities=15%  Similarity=0.322  Sum_probs=79.4

Q ss_pred             CCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcccCcccccccCchhhhHHhhhhhc
Q 039095           38 TQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSK  117 (492)
Q Consensus        38 ~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~~~f~~~~~~~~h~  117 (492)
                      ++||.|++|++.|...+.|.+|+++|+++  +||.|++|++.|.+...|..|+++|++.+|.|+.|+..|.....|..|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC--CCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC--CCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHH
Confidence            57999999999999999999999999999  8999999999999999999999999999999999999999999999998


Q ss_pred             cccccc
Q 039095          118 RKRYNF  123 (492)
Q Consensus       118 ~~~~~~  123 (492)
                      +..+..
T Consensus        79 ~~~h~~   84 (88)
T 1llm_C           79 ARLKKL   84 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=2.4e-18  Score=132.24  Aligned_cols=86  Identities=19%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             CCCCceeccc--CccccccchhhhhhcccCCCCCCCCCC--cCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccc
Q 039095          339 QKESEIRCQA--CNKIFCSRRALGGHQRMHSAKRSSLPV--KTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKV  414 (492)
Q Consensus       339 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~  414 (492)
                      ...++|.|++  |++.|.+...|..|+++|+++++|.|.  .|+..+.....+.      .|+++|++++||.|++|++.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~------~H~~~h~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT------RHYRKHTGAKPFQCGVCNRS   84 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHH------HHHHHHTSCCSCBCSSSCCB
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHH------HHHHHhCCCCCeECCCCcCc
Confidence            4567899986  999999999999999999999999996  5987775544443      37788999999999999999


Q ss_pred             cCCchhhhhhhhhccc
Q 039095          415 FATGQALGGHKRAHLV  430 (492)
Q Consensus       415 F~~~~~L~~H~r~H~~  430 (492)
                      |.+...|..|+++|++
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            9999999999999974

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=2.5e-18  Score=129.00  Aligned_cols=83  Identities=17%  Similarity=0.309  Sum_probs=70.2

Q ss_pred             CCceeccc--CccccccchhhhhhcccCCCCCCCCCC--cCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          341 ESEIRCQA--CNKIFCSRRALGGHQRMHSAKRSSLPV--KTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       341 ~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .++|.|++  |++.|.+...|..|+++|+++++|.|.  .|+..+.....+..      |+++|++++||.|++|++.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTR------HYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHH------HHHHHHCCCCEECSSSSCEES
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHH------HHHHcCCCCCccCCCCCcccC
Confidence            45788888  999999999999998889888899987  58877755444333      677888999999999999999


Q ss_pred             Cchhhhhhhhhcc
Q 039095          417 TGQALGGHKRAHL  429 (492)
Q Consensus       417 ~~~~L~~H~r~H~  429 (492)
                      +.+.|..|+++|.
T Consensus        77 ~~~~l~~H~~~H~   89 (89)
T 2wbs_A           77 RSDHLALHMKRHF   89 (89)
T ss_dssp             SHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999984

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=4.2e-18  Score=124.55  Aligned_cols=72  Identities=22%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             CCCCCccccCC--CCcccccccchhhhhh-ccCCCCcccccc--ccccccChhHHHhhhhccCcccccccccccchhhh
Q 039095            7 DDGHISYDLRE--NPKKSWKFSSFNHAAS-ASASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCKECGKAL   80 (492)
Q Consensus         7 ~~~~~~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F   80 (492)
                      ..++++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|.+|+++|+++  +||.|++|+++|
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~k~F   78 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT--RDYICEFSGPSS   78 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTS--CCCSCCSSSCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCC--CCeeCCCCCCCC
Confidence            34566677765  7777777777777776 577777777776  777777777777777777776  677777777766

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.6e-18  Score=125.76  Aligned_cols=81  Identities=17%  Similarity=0.331  Sum_probs=73.1

Q ss_pred             chhhhhhccCCCCccccccccccccChhHHHhhhhccCccc--ccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           27 SFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRE--RERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        27 ~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~--~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|..|+++|++++||.|.+|++.|.....|.+|+++|+.+.  +++|.|++|++.|.....|..|+++|++ +++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            57889999999999999999999999999999999887652  2589999999999999999999999996 89999999


Q ss_pred             Cchh
Q 039095          104 GAVK  107 (492)
Q Consensus       104 ~~~f  107 (492)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.2e-17  Score=126.20  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=72.6

Q ss_pred             CcccccccchhhhhhccCCCCccccccccccc-cChhHHHhhhhccCcccccccccccchhhhcChhhHhhh-hhhcccC
Q 039095           19 PKKSWKFSSFNHAASASASTQESQCKVCGKDF-ESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH-MRVHSQK   96 (492)
Q Consensus        19 ~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F-~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H-~~~H~~k   96 (492)
                      +.+|.....|..|++.|.++++|.|++|++.| .+...|+.|+++| ++  ++|.|.+|++.|..+..|+.| +++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~--k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQ--EMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CC--CCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CC--CCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            55788889999999999999999999999999 9999999999999 88  999999999999999999999 9999987


Q ss_pred             cc
Q 039095           97 LR   98 (492)
Q Consensus        97 ~~   98 (492)
                      +|
T Consensus        90 p~   91 (96)
T 2ctd_A           90 PS   91 (96)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.68  E-value=5.1e-18  Score=126.08  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=69.9

Q ss_pred             cccc--CCCCcccccccchhhhhhccCCCCcccccc--ccccccChhHHHhhhhccCccccccccccc---chhhhcChh
Q 039095           12 SYDL--RENPKKSWKFSSFNHAASASASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCKE---CGKALLSAK   84 (492)
Q Consensus        12 ~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~---C~k~F~~~~   84 (492)
                      ||.|  ++|++.|.+...|..|++.|.+++||.|++  |++.|.+...|.+|+++|++     |.|++   |++.|.+..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~   75 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWT   75 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHH
Confidence            5889  889999999999999999999999999988  99999999999999999874     88998   999999999


Q ss_pred             hHhhhhhhcc
Q 039095           85 SLSNHMRVHS   94 (492)
Q Consensus        85 ~L~~H~~~H~   94 (492)
                      .|..|+++|+
T Consensus        76 ~l~~H~~~hh   85 (85)
T 2j7j_A           76 LYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999998875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=7.9e-18  Score=128.34  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             cccccccchhhhhhccCCCCcccccccccccc-ChhHHHhhhhccCc-ccccccccccchhhhcChhhHhhhhhhccc-C
Q 039095           20 KKSWKFSSFNHAASASASTQESQCKVCGKDFE-SLKALYGHMRHHSR-RERERIQCKECGKALLSAKSLSNHMRVHSQ-K   96 (492)
Q Consensus        20 k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~-~~~~L~~H~r~H~~-~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k   96 (492)
                      ..+.....+..|+++|.++++|.|.+|++.|. ....|.+|+++|++ +  ++|.|++|++.|.++..|++|+++|++ +
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~--~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQ--DALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHH--HHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCC--CCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            34667788899999999999999999999999 99999999999999 7  899999999999999999999999985 5


Q ss_pred             cc
Q 039095           97 LR   98 (492)
Q Consensus        97 ~~   98 (492)
                      ++
T Consensus        82 p~   83 (98)
T 2gqj_A           82 PS   83 (98)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.8e-17  Score=119.36  Aligned_cols=65  Identities=31%  Similarity=0.596  Sum_probs=40.8

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRAC  100 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C  100 (492)
                      .+.++++|.|.+|++.|.....|.+|+++|+++  ++|.|++|++.|.....|.+|+++|++ +||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE--KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS--CSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCC--cCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            455566666666666666666666666666666  566666666666666666666666664 55655

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.4e-17  Score=120.48  Aligned_cols=71  Identities=31%  Similarity=0.624  Sum_probs=66.9

Q ss_pred             cCCCCcccccc--ccccccChhHHHhhhh-ccCccccccccccc--chhhhcChhhHhhhhhhccc-CcccccccCchh
Q 039095           35 SASTQESQCKV--CGKDFESLKALYGHMR-HHSRRERERIQCKE--CGKALLSAKSLSNHMRVHSQ-KLRACNESGAVK  107 (492)
Q Consensus        35 H~~~~~~~C~~--C~k~F~~~~~L~~H~r-~H~~~~~k~y~C~~--C~k~F~~~~~L~~H~~~H~~-k~~~C~~C~~~f  107 (492)
                      .+++++|.|..  |++.|.+...|.+|++ +|+++  ++|.|++  |++.|.+...|+.|+++|++ ++|.|++|++.|
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSC--CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCC--CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            36789999997  9999999999999999 79998  8999999  99999999999999999995 999999999887

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2e-17  Score=126.10  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             ccCCCCCcccc-CCCCCCceecccCccccc-cchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCC-
Q 039095          326 MCNASDYDVFD-DPQKESEIRCQACNKIFC-SRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRG-  402 (492)
Q Consensus       326 f~~~~~l~~h~-~~~~~~~~~C~~C~k~F~-~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~-  402 (492)
                      +.....+..|. .|.++++|.|++|++.|. +...|..|+++|+                                  + 
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~----------------------------------~~   51 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ----------------------------------KL   51 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH----------------------------------HH
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc----------------------------------CC
Confidence            44455555554 677788888888888888 8888888888887                                  6 


Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      ++||.|++|++.|.++..|.+|+++|+++++.
T Consensus        52 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             HHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            89999999999999999999999999988775

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=8.3e-17  Score=116.80  Aligned_cols=65  Identities=22%  Similarity=0.294  Sum_probs=62.6

Q ss_pred             CCCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095            7 DDGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus         7 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      ..++++|.|.+|++.|.+...|..|++.|.+++||.|++|++.|.....|.+|+++|+++  +||+|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS--GPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCC--CCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCC--CCCCC
Confidence            457889999999999999999999999999999999999999999999999999999999  89998

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.4e-17  Score=114.11  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .+.++++|.|++|++.|.+...|.+|+++|+                                  +++||.|++|++.|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~----------------------------------~~~~~~C~~C~~~f~   48 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC----------------------------------TDRPFKCNYCSFDTK   48 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC----------------------------------CSCSEECSSSSCEES
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC----------------------------------CCCCEeCCCCCCccC
Confidence            4678899999999999999999999999999                                  789999999999999


Q ss_pred             CchhhhhhhhhcccCCCCC
Q 039095          417 TGQALGGHKRAHLVKNLDN  435 (492)
Q Consensus       417 ~~~~L~~H~r~H~~~~~~~  435 (492)
                      ++..|.+|+++|+++++.+
T Consensus        49 ~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           49 QPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SHHHHHHHHHHHHSSSCCS
T ss_pred             CHHHHHHHHHHHhCCCCCC
Confidence            9999999999999987763

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.7e-17  Score=116.89  Aligned_cols=65  Identities=31%  Similarity=0.574  Sum_probs=57.9

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcccCc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQKL   97 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~   97 (492)
                      +.++|++++||.|++|++.|.....|.+|+++|+++  +||+|++|++.|.....|++|+++|++.+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE--KPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS--CCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCC--CCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            456788999999999999999999999999999988  89999999999999999999999998643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=6e-17  Score=122.67  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             ccCCCCccccccccccccChhHHHhhhh-cc---CcccccccccccchhhhcChhhHhhh-hhhccc-CcccccccC
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMR-HH---SRRERERIQCKECGKALLSAKSLSNH-MRVHSQ-KLRACNESG  104 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r-~H---~~~~~k~y~C~~C~k~F~~~~~L~~H-~~~H~~-k~~~C~~C~  104 (492)
                      .-++++||.|.+|++.|...+.|.+|++ +|   .++  +||.|++||++|..++.|..| +++|+| +||.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~e--kpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLN--SSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCS--CCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCC--CCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            3467777777777777777777777776 47   345  677777777777777777777 677775 777777755

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=8.8e-17  Score=117.24  Aligned_cols=62  Identities=23%  Similarity=0.419  Sum_probs=56.6

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .+...++|.|++||+.|.++..|.+|+++|+                                  +++||.|++|+++|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~----------------------------------~~k~~~C~~C~k~F~   67 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLH----------------------------------AAQVFPCKYCPATFY   67 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTS----------------------------------CSSSEECTTSSCEES
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhcc----------------------------------CCCccCCCCCCCEeC
Confidence            4567889999999999999999999999999                                  889999999999999


Q ss_pred             Cchhhhhhh-hhcccCC
Q 039095          417 TGQALGGHK-RAHLVKN  432 (492)
Q Consensus       417 ~~~~L~~H~-r~H~~~~  432 (492)
                      ++..|.+|+ ++|.+++
T Consensus        68 ~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           68 SSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SHHHHHHHHHTTCTTCC
T ss_pred             CHHHHHHhCcccCcCCC
Confidence            999999997 5787654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=7.6e-17  Score=122.10  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             CCCCCCCccccCCCCcccccccchhhhhh-cc---CCCCccccccccccccChhHHHhh-hhccCcccccccccccch
Q 039095            5 KGDDGHISYDLRENPKKSWKFSSFNHAAS-AS---ASTQESQCKVCGKDFESLKALYGH-MRHHSRRERERIQCKECG   77 (492)
Q Consensus         5 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~-~H---~~~~~~~C~~C~k~F~~~~~L~~H-~r~H~~~~~k~y~C~~C~   77 (492)
                      +.-.|+++|.|.+|++.|.....|..|++ .|   .+++||.|.+|++.|...+.|.+| +++|+++  +||.|.++.
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htge--kpy~C~~~~   86 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE--ENFKLTMVK   86 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTC--CCEEEEECC
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCC--CCeeCCccc
Confidence            45578999999999999999999999997 59   678999999999999999999999 8999999  999999854

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.4e-16  Score=113.89  Aligned_cols=63  Identities=32%  Similarity=0.493  Sum_probs=59.4

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .|.++++|.|++|++.|.+...|.+|+++|+                                  +++||.|++|++.|.
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~----------------------------------~~~~~~C~~C~~~f~   53 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT----------------------------------GEKPYKCLECGKAFS   53 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG----------------------------------CSCCEECSSSCCEES
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcC----------------------------------CCCCeECCCCCcccC
Confidence            6788999999999999999999999999998                                  789999999999999


Q ss_pred             CchhhhhhhhhcccCCC
Q 039095          417 TGQALGGHKRAHLVKNL  433 (492)
Q Consensus       417 ~~~~L~~H~r~H~~~~~  433 (492)
                      ++..|.+|+++|+++..
T Consensus        54 ~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           54 QNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             SHHHHHHHHHHHHSSSS
T ss_pred             CHHHHHHHHHhcCCCCC
Confidence            99999999999987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.63  E-value=3.1e-17  Score=132.38  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             CCCCCCCCCCCccccCCCCcccccccchhhh---hhccCCCCcccccccccccc------ChhHHHhhhhccCccccccc
Q 039095            1 MDSAKGDDGHISYDLRENPKKSWKFSSFNHA---ASASASTQESQCKVCGKDFE------SLKALYGHMRHHSRRERERI   71 (492)
Q Consensus         1 ~~~~~~~~~~~~~~C~~C~k~f~~~~~l~~H---~~~H~~~~~~~C~~C~k~F~------~~~~L~~H~r~H~~~~~k~y   71 (492)
                      +|.+..+.|.++|.|..++..  ....+..+   ......+++|.|++|.+.|.      ....|..|+ .|+++  +||
T Consensus         1 ~~~~~~~~~~k~~~~~~k~~~--~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~--~~~   75 (129)
T 2wbt_A            1 MTESDVDSGSKKYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAI--SQF   75 (129)
T ss_dssp             ----CCCTTCCGGGGCSSCEE--EECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHH--CSE
T ss_pred             CccchhcccccccccccCCee--eeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCC--CCe
Confidence            466777889999999886644  33344444   23344567899999998887      556677777 68888  999


Q ss_pred             ccccchhhhcChhhHhhhhhhcccCcccccccCchhhhHHhhhhhccccccc
Q 039095           72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESGAVKSLVLKKKRSKRKRYNF  123 (492)
Q Consensus        72 ~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~~~f~~~~~~~~h~~~~~~~  123 (492)
                      .|++||+.|.....|..|+++| .++|.|++|++.|.....|.+|++.+++.
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9999999999999999999999 99999999999999999999999887643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=1.6e-16  Score=114.30  Aligned_cols=59  Identities=17%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             CCCCccccCCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095            8 DGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus         8 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .+.++|.|.+|++.|.+...|..|++.|.++++|+|.+|++.|.....|.+|+++|+++
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            34444444444444444444444444444444444444444444444444444444444

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.61  E-value=8.3e-17  Score=119.45  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=73.4

Q ss_pred             cccc--ccccccccChhHHHhhhhccCccccccccccc--chhhhcChhhHhhhhhhcccCcccccc---cCchhhhHHh
Q 039095           40 ESQC--KVCGKDFESLKALYGHMRHHSRRERERIQCKE--CGKALLSAKSLSNHMRVHSQKLRACNE---SGAVKSLVLK  112 (492)
Q Consensus        40 ~~~C--~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C~k~F~~~~~L~~H~~~H~~k~~~C~~---C~~~f~~~~~  112 (492)
                      ||.|  +.|++.|.....|.+|+++|+++  ++|+|++  |++.|.+...|..|+++|++  |.|..   |++.|.....
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ--LPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT--CCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC--CCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHH
Confidence            6999  99999999999999999999999  8999999  99999999999999999998  99999   9999999999


Q ss_pred             hhhhcccc
Q 039095          113 KKRSKRKR  120 (492)
Q Consensus       113 ~~~h~~~~  120 (492)
                      +..|++.+
T Consensus        77 l~~H~~~h   84 (85)
T 2j7j_A           77 YLKHVAEC   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=2e-16  Score=113.80  Aligned_cols=64  Identities=25%  Similarity=0.462  Sum_probs=59.7

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLR   98 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~   98 (492)
                      ..+.++++|.|.+|++.|.....|.+|+++|+++  ++|+|++|++.|.....|.+|+++|++ +||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE--KPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCC--CSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCC--CCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3577899999999999999999999999999999  899999999999999999999999996 665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=2.3e-16  Score=115.01  Aligned_cols=64  Identities=30%  Similarity=0.510  Sum_probs=55.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhh-hhccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHM-RVHSQ   95 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~-~~H~~   95 (492)
                      ..+..+...++|.|++|++.|.++..|.+|+++|+++  +||.|++|+++|.++.+|.+|+ ++|++
T Consensus        18 ~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           18 GVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAA--QVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             SCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCS--SSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCC--CccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            3355677888999999999999999999999999998  8999999999999999999997 46764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.6e-16  Score=115.24  Aligned_cols=68  Identities=16%  Similarity=0.419  Sum_probs=61.7

Q ss_pred             chhhhhhccCCCCccccccccccccChhHHHhhhh-ccCcccccccccccchhhhcChhhHhhhhhhccc
Q 039095           27 SFNHAASASASTQESQCKVCGKDFESLKALYGHMR-HHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        27 ~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r-~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      +|..|+++|++++||.|++|++.|.....|.+|++ .|.++. ++|+|++|++.|.....|..|+++|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~-~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV-AKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSC-SSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCC-CccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            57789999999999999999999999999999997 677632 799999999999999999999998764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.1e-17  Score=117.26  Aligned_cols=71  Identities=18%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             cccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           24 KFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        24 ~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +...|..|+++|.+++||.|.+|++.|.....|..       +  ++|.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~--~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------R--KTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------S--SSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------C--CCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            45678999999999999999999999999999988       4  899999999999999999999999996 8999998


Q ss_pred             c
Q 039095          103 S  103 (492)
Q Consensus       103 C  103 (492)
                      |
T Consensus        73 C   73 (73)
T 2ctu_A           73 G   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            8

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=4.1e-16  Score=110.78  Aligned_cols=60  Identities=25%  Similarity=0.403  Sum_probs=44.5

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      .|+++++|.|.+|++.|.....|.+|+++|+++  ++|.|++|++.|.....|.+|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD--RPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCS--CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            356677777777777777777777777777777  677777777777777777777777764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=3.4e-17  Score=132.14  Aligned_cols=82  Identities=20%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             CCccccCCCCcccc------cccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcCh
Q 039095           10 HISYDLRENPKKSW------KFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSA   83 (492)
Q Consensus        10 ~~~~~C~~C~k~f~------~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~   83 (492)
                      ++.|.|++|.+.|.      ....|.+|+ .|++++||.|++|++.|.....|.+|+++|  +  +||.|++|++.|...
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~--~~~~C~~C~k~f~~~  113 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--E--HTKVCPVCKKEFTST  113 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--C--CCCBCTTTCCBCSSH
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--C--CCCCCCCCCcccCCH
Confidence            46688999988877      445678887 589999999999999999999999999999  5  899999999999999


Q ss_pred             hhHhhhhhhcccC
Q 039095           84 KSLSNHMRVHSQK   96 (492)
Q Consensus        84 ~~L~~H~~~H~~k   96 (492)
                      ..|++|+++|++.
T Consensus       114 ~~l~~H~~~h~~~  126 (129)
T 2wbt_A          114 DSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCc
Confidence            9999999999863

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.59  E-value=2.4e-16  Score=107.01  Aligned_cols=57  Identities=32%  Similarity=0.452  Sum_probs=50.6

Q ss_pred             CCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCch
Q 039095          340 KESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQ  419 (492)
Q Consensus       340 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~  419 (492)
                      ++++|.|++|++.|.+...|..|+++|+                                  +++||.|++|+++|.++.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------------------------~~~~~~C~~C~~~f~~~~   46 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT----------------------------------GEKPYKCEFCEYAAAQKT   46 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH----------------------------------CCCCEECSSSSCEESSHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC----------------------------------CCCCcCCCCCcchhCCHH
Confidence            4679999999999999999999999998                                  789999999999999999


Q ss_pred             hhhhhhhhccc
Q 039095          420 ALGGHKRAHLV  430 (492)
Q Consensus       420 ~L~~H~r~H~~  430 (492)
                      .|.+|+++|++
T Consensus        47 ~l~~H~~~hh~   57 (57)
T 3uk3_C           47 SLRYHLERHHK   57 (57)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.2e-16  Score=109.92  Aligned_cols=62  Identities=16%  Similarity=0.415  Sum_probs=55.7

Q ss_pred             hhccCCCCccccccccccccChhHHHhhhhc-c-CcccccccccccchhhhcChhhHhhhhhhccc
Q 039095           32 ASASASTQESQCKVCGKDFESLKALYGHMRH-H-SRRERERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        32 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~-H-~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      +++|++++||.|++|++.|.+...|.+|+++ | .++  +||.|++|++.|.+...|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~--~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV--KVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSC--CCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCC--cCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4678999999999999999999999999998 6 477  899999999999999999999998864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.58  E-value=6.5e-16  Score=104.80  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=53.4

Q ss_pred             ceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhh
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALG  422 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~  422 (492)
                      ||.|++|++.|.+...|..|+++|+                                  +++||.|++|++.|.+...|.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~----------------------------------~~~~~~C~~C~~~f~~~~~l~   46 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT----------------------------------DVRPYHCTYCNFSFKTKGNLT   46 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS----------------------------------SCCCEECSSSSCEESSHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC----------------------------------CCCCccCCCCCchhcCHHHHH
Confidence            6899999999999999999999999                                  789999999999999999999


Q ss_pred             hhhhhcccCC
Q 039095          423 GHKRAHLVKN  432 (492)
Q Consensus       423 ~H~r~H~~~~  432 (492)
                      +|+++|++++
T Consensus        47 ~H~~~h~~~k   56 (57)
T 1bbo_A           47 KHMKSKAHSK   56 (57)
T ss_dssp             HHHHSSSSCC
T ss_pred             HHHHHhcccC
Confidence            9999998865

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.6e-15  Score=109.89  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             cccc-CCCCCCceecccCccccccchhhhhhcc-cCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCC-CCcccCC
Q 039095          333 DVFD-DPQKESEIRCQACNKIFCSRRALGGHQR-MHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRG-NKEHTCR  409 (492)
Q Consensus       333 ~~h~-~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~-~kpf~C~  409 (492)
                      ..|. .|+++++|.|++|++.|.+...|..|++ .|+                                  + ++||.|+
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~----------------------------------~~~~~~~C~   49 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT----------------------------------ENVAKFHCP   49 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS----------------------------------SSCSSEECS
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC----------------------------------CCCCccCCC
Confidence            3443 7889999999999999999999999997 677                                  4 4899999


Q ss_pred             ccccccCCchhhhhhhhhcccCCCC
Q 039095          410 ICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       410 ~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      +|++.|.++..|.+|+++|++...+
T Consensus        50 ~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           50 HCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             SSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCC
Confidence            9999999999999999987765544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.57  E-value=4.4e-16  Score=105.67  Aligned_cols=56  Identities=30%  Similarity=0.522  Sum_probs=42.4

Q ss_pred             CCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           37 STQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        37 ~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      +++||.|.+|++.|.+...|..|+++|+++  +||.|++|++.|.....|..|+++|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE--KPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCC--CCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCC--CCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            356788888888888888888888888877  78888888888888888888888775

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.3e-15  Score=113.15  Aligned_cols=73  Identities=14%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             CCCCCCccccCCCCcccccccchhhhhhccCCC----CccccccccccccChhHHHhhhhccCcccccccccccchhhh
Q 039095            6 GDDGHISYDLRENPKKSWKFSSFNHAASASAST----QESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKAL   80 (492)
Q Consensus         6 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~----~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F   80 (492)
                      .+.++++|.|.+|++.|.+...|..|++.|...    ++|.|.+|++.|.....|.+|+++|+++  ++|.|..|+..|
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~~~~~~~~~   85 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP--DGVEGENSGPSS   85 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC--CSCCCCCCCCCC
T ss_pred             eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC--CCcccCCCCCCC
Confidence            456789999999999999999999999876655    7999999999999999999999999999  899999999865

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=7.2e-16  Score=108.11  Aligned_cols=60  Identities=20%  Similarity=0.445  Sum_probs=55.9

Q ss_pred             CCCCCCceecccCccccccchhhhhhccc-C-CCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccc
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRM-H-SAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKV  414 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H-~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~  414 (492)
                      .|+++++|.|++|++.|.+...|..|+++ | +                                  +++||.|++|+++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~----------------------------------~~~~~~C~~C~k~   49 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR----------------------------------NVKVYPCPFCFKE   49 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSS----------------------------------SCCCEECTTTCCE
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCC----------------------------------CCcCeECCCCCCc
Confidence            56788999999999999999999999998 7 5                                  7899999999999


Q ss_pred             cCCchhhhhhhhhccc
Q 039095          415 FATGQALGGHKRAHLV  430 (492)
Q Consensus       415 F~~~~~L~~H~r~H~~  430 (492)
                      |.+++.|.+|+++|++
T Consensus        50 f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           50 FTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ESCHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHcC
Confidence            9999999999999876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.9e-15  Score=103.65  Aligned_cols=57  Identities=25%  Similarity=0.519  Sum_probs=52.8

Q ss_pred             CceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhh
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQAL  421 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L  421 (492)
                      ++|.|++|++.|.+...|..|+++|+                                  +++||.|++|++.|.++..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~----------------------------------~~~~~~C~~C~~~f~~~~~l   46 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT----------------------------------NEKPYPCGLCNRAFTRRDLL   46 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT----------------------------------SSCSEECTTTCCEESSHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC----------------------------------CCCCccCCCCCCccCCHHHH
Confidence            57999999999999999999999999                                  78999999999999999999


Q ss_pred             hhhh-hhcccCC
Q 039095          422 GGHK-RAHLVKN  432 (492)
Q Consensus       422 ~~H~-r~H~~~~  432 (492)
                      .+|+ ++|.++.
T Consensus        47 ~~H~~~~H~~~~   58 (60)
T 2adr_A           47 IRHAQKIHSGNL   58 (60)
T ss_dssp             HHHHTTTSCCSS
T ss_pred             HHHHHHHcCCcC
Confidence            9997 6887653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2e-15  Score=109.81  Aligned_cols=66  Identities=23%  Similarity=0.434  Sum_probs=57.2

Q ss_pred             CCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCC
Q 039095          338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFAT  417 (492)
Q Consensus       338 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~  417 (492)
                      |+++++|+|++|++.|.+...|.+|+++|+++.                               +++||.|++|++.|.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~-------------------------------~~~~~~C~~C~k~f~~   50 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV-------------------------------AALRFPCEFCGKRFEK   50 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT-------------------------------TTCCEECTTTCCEESS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC-------------------------------CCcccCCCCCCchhCC
Confidence            678999999999999999999999999998321                               3799999999999999


Q ss_pred             chhhhhhhh-hcccCCCC
Q 039095          418 GQALGGHKR-AHLVKNLD  434 (492)
Q Consensus       418 ~~~L~~H~r-~H~~~~~~  434 (492)
                      +..|.+|++ .|.+..+.
T Consensus        51 ~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A           51 PDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             HHHHHHHHHHTSTTTSSC
T ss_pred             HHHHHHHHHHhCCCCCCC
Confidence            999999995 55555444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.52  E-value=4.1e-15  Score=100.80  Aligned_cols=53  Identities=23%  Similarity=0.510  Sum_probs=32.8

Q ss_pred             ccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      ||.|++|++.|.....|..|+++|+++  ++|.|++|++.|.+...|..|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDV--RPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC--CCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCC--CCccCCCCCchhcCHHHHHHHHHHhc
Confidence            456666666666666666666666665  56666666666666666666666655

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=5.1e-15  Score=107.58  Aligned_cols=60  Identities=28%  Similarity=0.535  Sum_probs=52.4

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCc---ccccccccccchhhhcChhhHhhhhhh-ccc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSR---RERERIQCKECGKALLSAKSLSNHMRV-HSQ   95 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~---~~~k~y~C~~C~k~F~~~~~L~~H~~~-H~~   95 (492)
                      .|++++||+|.+|++.|.....|.+|+++|++   +  ++|.|++|++.|.....|.+|++. |.+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~--~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAA--LRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTT--CCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCC--cccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            37889999999999999999999999999986   5  899999999999999999999954 544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=8.1e-15  Score=100.46  Aligned_cols=55  Identities=27%  Similarity=0.573  Sum_probs=40.2

Q ss_pred             CccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhh-hhccc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHM-RVHSQ   95 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~-~~H~~   95 (492)
                      +||.|++|++.|...+.|.+|+++|+++  ++|.|++|++.|.+...|..|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE--KPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS--CSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCC--CCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4677777777777777777777777777  6777777777777777777775 46654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=7.4e-15  Score=105.19  Aligned_cols=59  Identities=32%  Similarity=0.660  Sum_probs=55.3

Q ss_pred             CCCCCCceecc--cCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccc
Q 039095          337 DPQKESEIRCQ--ACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKV  414 (492)
Q Consensus       337 ~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~  414 (492)
                      .+.++++|.|+  .|++.|.+...|..|+++|+                                  +++||.|++|++.
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~----------------------------------~~~~~~C~~C~~~   58 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHT----------------------------------GQKPFQCRICMRN   58 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH----------------------------------CCCCEECTTTCCE
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC----------------------------------CCCCeECCCCCch
Confidence            56789999997  59999999999999999998                                  7899999999999


Q ss_pred             cCCchhhhhhhhhcc
Q 039095          415 FATGQALGGHKRAHL  429 (492)
Q Consensus       415 F~~~~~L~~H~r~H~  429 (492)
                      |.++..|.+|+++|+
T Consensus        59 f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           59 FSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ESCHHHHHHHHTTCC
T ss_pred             hCCHHHHHHHHHhcC
Confidence            999999999999985

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=6.2e-15  Score=105.62  Aligned_cols=63  Identities=22%  Similarity=0.507  Sum_probs=57.7

Q ss_pred             hhhhccCCCCccccc--cccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhcc
Q 039095           30 HAASASASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      +....|.++++|.|+  .|++.|.....|.+|+++|+++  ++|.|++|++.|.....|.+|+++|+
T Consensus         9 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCC--CCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCC--CCeECCCCCchhCCHHHHHHHHHhcC
Confidence            345568899999997  5999999999999999999999  89999999999999999999999985

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.5e-15  Score=104.68  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             ccccCCcccccccCCCCCccccCCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcC
Q 039095          315 AEYGGDSSSKAMCNASDYDVFDDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKT  377 (492)
Q Consensus       315 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  377 (492)
                      ++|.|+.|++.|.....|..      +++|.|++||+.|.+...|..|+++|++++||.|+.|
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            78999999999999888876      7789999999999999999999999986666666554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.7e-14  Score=107.68  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=56.6

Q ss_pred             CCCccccCCCCccc-ccccchhhhhhccCCCCccccccccccccChhHHHhh-hhccCccccccccc
Q 039095            9 GHISYDLRENPKKS-WKFSSFNHAASASASTQESQCKVCGKDFESLKALYGH-MRHHSRRERERIQC   73 (492)
Q Consensus         9 ~~~~~~C~~C~k~f-~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H-~r~H~~~~~k~y~C   73 (492)
                      ++++|.|++|++.| .+...|..|+++| +++||.|.+|++.|...+.|++| +++|+++  ..|.+
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~--p~~~~   94 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL--PSGPS   94 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC--SSCSC
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC--CCCCC
Confidence            46789999999999 9999999999999 99999999999999999999999 9999876  44444

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.6e-14  Score=98.62  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             CCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCC-ccccccCC
Q 039095          339 QKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCR-ICLKVFAT  417 (492)
Q Consensus       339 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~-~C~k~F~~  417 (492)
                      -+.++|+|++|++.|. ...|..|+++ +                                  +++||.|+ +|+++|..
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~----------------------------------~~~p~~C~~~C~k~f~~   49 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-C----------------------------------PRLPVACPNQCGVGTVA   49 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-C----------------------------------SSSEEECTTCCSCCEEE
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-c----------------------------------CCcCccCCcccCccccc
Confidence            4678999999999999 9999999998 7                                  88999999 99999999


Q ss_pred             chhhhhhhhhcccCC
Q 039095          418 GQALGGHKRAHLVKN  432 (492)
Q Consensus       418 ~~~L~~H~r~H~~~~  432 (492)
                      ++.|..|+++|-...
T Consensus        50 ~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           50 REDLPGHLKDSCNTA   64 (66)
T ss_dssp             TTTHHHHHHTTSSSC
T ss_pred             HHHHHHHHHhhcccC
Confidence            999999999997543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=6.7e-14  Score=105.98  Aligned_cols=60  Identities=27%  Similarity=0.470  Sum_probs=47.3

Q ss_pred             ccccccccccccChhHHHhhhhc-cCcccccc--------cccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRH-HSRRERER--------IQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~-H~~~~~k~--------y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      .|+|.+|++.|.+...|.+|+++ |.++  ++        |.|++|++.|.....|+.|+++|++ ++|.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~--~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGG--PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCC--TTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCC--CCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            46788888888888888888877 7776  55        7888888888888888888888875 778875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=104.48  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             CCccccCCCCcccccccchhhhhhc-cCCCCc--------cccccccccccChhHHHhhhhccCcccccccccc
Q 039095           10 HISYDLRENPKKSWKFSSFNHAASA-SASTQE--------SQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      ...|.|.+|++.|.+...|..|++. |.++++        |.|.+|++.|.....|.+|+++|+++  +||.|+
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE--KSGPSS   94 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTC--CCCSSC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCC--CCCCCC
Confidence            3457799999999999999999998 999988        99999999999999999999999999  999996

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.4e-13  Score=88.49  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCC--CCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.39  E-value=1.1e-13  Score=88.95  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV--KPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSC--CCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            5777888888888888888888888888888888888  78888877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=88.54  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSS--SCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCC--CCcCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.3e-13  Score=88.56  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=37.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGK--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSC--CCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.2e-13  Score=88.74  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=37.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||+|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCC--CSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            5777888888888888888888888888888888888  78888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.3e-13  Score=88.64  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSC--CSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            5778888888888888888888888888888888888  78888877

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.6e-13  Score=88.14  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCS--SCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3777888888888888888888888888888888888  78888876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.3e-13  Score=88.63  Aligned_cols=45  Identities=20%  Similarity=0.341  Sum_probs=37.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSC--CSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            5777888888888888888888888888888888888  78888877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.4e-13  Score=88.44  Aligned_cols=45  Identities=27%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSS--SCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCC--CCCCCCCC
Confidence            4777788888888888888888888888888888887  78888877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=88.39  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=37.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCS--CCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.4e-13  Score=88.41  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV--KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCC--CSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.37  E-value=1.3e-13  Score=88.61  Aligned_cols=45  Identities=24%  Similarity=0.413  Sum_probs=36.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSC--CCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888887  78888776

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.8e-13  Score=95.62  Aligned_cols=55  Identities=20%  Similarity=0.561  Sum_probs=35.3

Q ss_pred             CCCCccccccccccccChhHHHhhhhccCcccccccccc-cchhhhcChhhHhhhhhhcc
Q 039095           36 ASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK-ECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        36 ~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~-~C~k~F~~~~~L~~H~~~H~   94 (492)
                      -+++||.|.+|++.|. .+.|..|+++ +++  +||.|+ +||+.|..++.|..|+++|.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~--~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPR--LPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSS--SEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCC--cCccCCcccCcccccHHHHHHHHHhhc
Confidence            3455666666666666 6666666666 555  666666 66666666666666666664

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=87.94  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTC--CCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            677888888888888888888888888888888888  78888877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.7e-13  Score=88.09  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=37.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE--NPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTS--CCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=8.3e-14  Score=89.51  Aligned_cols=45  Identities=22%  Similarity=0.432  Sum_probs=35.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE--KSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHST--TSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCC--CCCCCCCC
Confidence            5777778888888888888888888888888888777  77888776

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.7e-13  Score=88.08  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=37.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCC--CCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.37  E-value=1.5e-13  Score=88.33  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=36.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCC--CCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=87.70  Aligned_cols=45  Identities=31%  Similarity=0.413  Sum_probs=38.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE--KPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCS--CSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            3777888888888888888888888888888888888  88888887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.4e-13  Score=88.46  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ--KPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCC--CCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777788888888888888888888888888888887  78888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=87.93  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=37.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTC--SCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=87.63  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE--KTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSC--CCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3677788888888888888888888888888888887  78888877

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.6e-13  Score=88.18  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=37.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCC--CCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.4e-13  Score=87.54  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=36.2

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE--KPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSS--CSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            567788888888888888888888888888888887  78888877

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.9e-13  Score=87.82  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=37.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTC--CCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3677888888888888888888888888888888888  78888877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=87.93  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=36.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCC--CCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888877

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.7e-13  Score=88.04  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE--KCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCS--CSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            5778888888888888888888888888888888888  78888877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.4e-13  Score=88.42  Aligned_cols=45  Identities=22%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD--KHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSC--CCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            5777888888888888888888888888888888888  78888877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.37  E-value=1.6e-13  Score=88.17  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=37.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCC--SSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.7e-13  Score=88.05  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=37.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCC--SCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.4e-13  Score=88.50  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCC--CTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888877  78888776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.7e-13  Score=88.06  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE--RHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCC--SSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888877  78888776

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.5e-13  Score=88.36  Aligned_cols=45  Identities=22%  Similarity=0.387  Sum_probs=36.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTS--CCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888887  78888776

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=88.13  Aligned_cols=45  Identities=22%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSS--SCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888877  78888776

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.36  E-value=2.5e-13  Score=87.27  Aligned_cols=45  Identities=27%  Similarity=0.407  Sum_probs=36.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE--KPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSC--CCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888877

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.2e-13  Score=87.45  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=37.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE--RPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSC--CSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888888  78888877

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=88.49  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCC--SCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4677777788888888888888888888888888777  78888776

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=88.44  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGG--KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSC--CCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4677778888888888888888888888888888777  78888776

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=87.95  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY--RPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCC--CSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777788888888888888888888888888888887  78888877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=88.41  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCS--SCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            4677777777788888888888888888887777777  77777776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.35  E-value=2.6e-13  Score=87.17  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|.....|.+|+++|+++  +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE--KPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCS--SCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4677888888888888888888888888888888888  78888877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-13  Score=87.92  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=37.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQ--KNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCC--SCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            5778888888888888888888888888888888888  78888877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.5e-13  Score=87.20  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=38.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE--KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCS--SCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            4778888888888888888888888888888888888  88888887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2e-13  Score=87.60  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ--RPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSC--CCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            667778888888888888888888888888888877  78888776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.35  E-value=2.8e-13  Score=96.52  Aligned_cols=58  Identities=28%  Similarity=0.551  Sum_probs=43.1

Q ss_pred             ccCCCCcccccc--ccccccChhHHHhhhhccCccccccccccc--chhhhcChhhHhhhhhhc
Q 039095           34 ASASTQESQCKV--CGKDFESLKALYGHMRHHSRRERERIQCKE--CGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        34 ~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~--C~k~F~~~~~L~~H~~~H   93 (492)
                      .+...++|.|.+  |++.|.....|.+|+++|+++  +||+|++  |++.|.....|.+|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE--KPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSS--CSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCC--CCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            455667777777  777777777777777777777  7777754  777777777777777765

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.8e-13  Score=87.00  Aligned_cols=45  Identities=20%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTS--CCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4777888888888888888888888888888888887  78888765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2e-13  Score=87.68  Aligned_cols=45  Identities=22%  Similarity=0.390  Sum_probs=36.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSC--CCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888887  78888776

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.32  E-value=1e-13  Score=95.25  Aligned_cols=57  Identities=18%  Similarity=0.323  Sum_probs=50.1

Q ss_pred             hhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhh
Q 039095           28 FNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH   89 (492)
Q Consensus        28 l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H   89 (492)
                      |..|+++|++++||.|++|++.|...+.|.   ++|+++  +||.|++||+.|....++..+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~--k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMT--GTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTT--TEEBCSSSCCBCEECTTCSCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCC--CCEECCCCCCccccCcccccc
Confidence            677889999999999999999999988887   889998  899999999999988877654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.9e-13  Score=86.87  Aligned_cols=45  Identities=20%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE--KLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCC--CCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCC--CCCCCCCC
Confidence            3667788888888888888888888888888888877  78888776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.32  E-value=8.2e-13  Score=94.08  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCccccCC--CCcccccccchhhhhhccCCCCcccccc--ccccccChhHHHhhhhcc
Q 039095            2 DSAKGDDGHISYDLRE--NPKKSWKFSSFNHAASASASTQESQCKV--CGKDFESLKALYGHMRHH   63 (492)
Q Consensus         2 ~~~~~~~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H   63 (492)
                      |......+.++|.|..  |++.|.....|..|++.|.+++||+|.+  |++.|.....|.+|+++|
T Consensus         7 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445566788999999  9999999999999999999999999975  999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=8.1e-13  Score=87.99  Aligned_cols=47  Identities=23%  Similarity=0.518  Sum_probs=41.6

Q ss_pred             CCCCCCceecccCccccccchhhhhhcc-cCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCcccccc
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQR-MHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVF  415 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F  415 (492)
                      .+.++++|.|++|++.|.+...|.+|++ +|+                                  +++||.|++|+++|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~----------------------------------~~k~~~C~~C~k~F   51 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT----------------------------------SERPHKCQVWVSGP   51 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSC----------------------------------CCCCCCSSSSCCSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcC----------------------------------CCCCccCCCCCCCC
Confidence            5678899999999999999999999997 999                                  67788888888888


Q ss_pred             CC
Q 039095          416 AT  417 (492)
Q Consensus       416 ~~  417 (492)
                      .+
T Consensus        52 ~~   53 (54)
T 2eps_A           52 SS   53 (54)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6e-13  Score=85.90  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhh-ccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMR-HHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r-~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|+++  +||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~--k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE--KPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTS--CSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCC--CCCCCCCC
Confidence            47778888888888888888888888888888 88888  78888877

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=5.4e-13  Score=88.85  Aligned_cols=47  Identities=23%  Similarity=0.466  Sum_probs=36.9

Q ss_pred             ccCCCCccccccccccccChhHHHhhhh-ccCcccccccccccchhhhcC
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMR-HHSRRERERIQCKECGKALLS   82 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r-~H~~~~~k~y~C~~C~k~F~~   82 (492)
                      .|++++||.|++|++.|.....|.+|++ +|+++  +||.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~--k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCC--CCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCC--CCccCCCCCCCCCC
Confidence            4677778888888888888888888876 78877  78888888888765

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.31  E-value=5.3e-13  Score=85.65  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||+|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGE--KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCC--CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCC--cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.4e-13  Score=85.64  Aligned_cols=44  Identities=20%  Similarity=0.417  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGK--KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCC--SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCC--cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=4.7e-13  Score=85.88  Aligned_cols=44  Identities=30%  Similarity=0.469  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGE--KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSS--CSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCC--CceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.6e-13  Score=85.55  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.+..+|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGE--KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCC--CCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCC--CCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.2e-13  Score=86.15  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             HhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           57 YGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        57 ~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .+|+++|+++  ++|.|++|++.|....+|.+|+++|++ ++|.|++|
T Consensus         1 ~~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            1 GSSGSSGTGE--KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CCSSCTTSSC--CSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCcccCCCCC--cCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3699999999  999999999999999999999999996 99999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.3e-13  Score=85.67  Aligned_cols=44  Identities=30%  Similarity=0.432  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGE--KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSC--CSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCC--CCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.30  E-value=5.4e-13  Score=85.64  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|...+.|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGV--KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCC--CSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCC--CceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.7e-13  Score=85.52  Aligned_cols=45  Identities=24%  Similarity=0.407  Sum_probs=36.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCC--CSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            4677788888888888888888888888888888887  78888765

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=86.45  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             HhhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           57 YGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        57 ~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      ++|+++|+++  +||.|++||+.|...+.|..|+++|++ ++|.|++|
T Consensus         1 ~~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGE--RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCC--CCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCC--CCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3699999999  999999999999999999999999996 99999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6e-13  Score=85.44  Aligned_cols=44  Identities=25%  Similarity=0.474  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||+|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGE--KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCC--CSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCC--CCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.6e-13  Score=85.93  Aligned_cols=44  Identities=25%  Similarity=0.439  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  ++|.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSST--KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCS--CSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCC--CCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=5.8e-13  Score=85.49  Aligned_cols=44  Identities=25%  Similarity=0.480  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGE--KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTS--CCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCC--cCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.1e-13  Score=85.75  Aligned_cols=44  Identities=23%  Similarity=0.457  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|...+.|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGE--RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCC--CSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCC--CCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.3e-13  Score=85.34  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=42.0

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGE--KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCC--CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCC--CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.3e-13  Score=85.66  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGE--KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCC--CSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCC--cCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.2e-13  Score=85.35  Aligned_cols=44  Identities=16%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGE--KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSC--CSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCC--CCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 89999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.5e-13  Score=84.94  Aligned_cols=44  Identities=25%  Similarity=0.459  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|..+..|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGG--KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSS--CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCC--CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.4e-13  Score=85.27  Aligned_cols=44  Identities=25%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGE--KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSC--CSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCC--CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.7e-13  Score=85.17  Aligned_cols=44  Identities=27%  Similarity=0.464  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGE--KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCC--CSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCC--CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.1e-13  Score=85.07  Aligned_cols=44  Identities=25%  Similarity=0.468  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGE--KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSC--CTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCC--cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.2e-13  Score=85.33  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=42.0

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGE--KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCC--CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCC--CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999995 99999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.9e-13  Score=85.46  Aligned_cols=44  Identities=25%  Similarity=0.396  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGE--NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSS--CCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCC--cCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.1e-13  Score=85.06  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||+|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGE--KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSS--CSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCC--CCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.1e-13  Score=85.38  Aligned_cols=44  Identities=27%  Similarity=0.483  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGE--KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSS--CSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCC--CCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.6e-13  Score=85.22  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|...+.|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGE--KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCS--SSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCC--CCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            599999999  999999999999999999999999996 99999988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.4e-13  Score=85.61  Aligned_cols=44  Identities=25%  Similarity=0.371  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGV--KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCC--CSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCC--cCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.4e-13  Score=85.63  Aligned_cols=44  Identities=20%  Similarity=0.362  Sum_probs=42.0

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGE--RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCC--CSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCC--CCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.6e-13  Score=85.23  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGE--KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCC--CSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCC--CCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=84.29  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~h~~~h~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVE--KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCC--SSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCC--CCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 99999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=7.4e-13  Score=84.07  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      |+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         1 H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGE--KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSC--CCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCC--cCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            78999999  999999999999999999999999996 99999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.8e-13  Score=84.61  Aligned_cols=44  Identities=23%  Similarity=0.422  Sum_probs=41.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|....+|++|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGE--KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCC--CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCC--CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            489999999  999999999999999999999999995 99999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.9e-13  Score=85.44  Aligned_cols=44  Identities=25%  Similarity=0.445  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGE--KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--SSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCC--CCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.28  E-value=8.5e-13  Score=84.66  Aligned_cols=44  Identities=20%  Similarity=0.396  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGE--KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--CSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCC--CCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.28  E-value=9e-13  Score=84.58  Aligned_cols=44  Identities=32%  Similarity=0.444  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.+...|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGE--KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCC--CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCC--cCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=7.9e-13  Score=84.87  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|+.|+++|++ ++|.|+.|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGE--KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--SSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCC--CCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1e-12  Score=84.33  Aligned_cols=44  Identities=23%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  ++|.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGE--KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCC--CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCC--cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 99999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.1e-13  Score=84.81  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++||+.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGE--KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--CSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCC--CCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 89999988

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=83.62  Aligned_cols=44  Identities=20%  Similarity=0.330  Sum_probs=35.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTS--SCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCC--CCCCCCC
Confidence            4677788888888888888888888888888888887  7888864

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8e-13  Score=84.81  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGE--KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCC--CSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCC--cCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=84.07  Aligned_cols=44  Identities=32%  Similarity=0.410  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  ++|.|++|++.|....+|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGE--KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCC--CSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCC--CCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 99999988

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=83.76  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=35.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||+|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCC--CCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4777888888888888888888888888888888887  7888864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=83.53  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      ++++|++++||.|++|++.|.....|.+|+++|+++  +||.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSS--CCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            356788888888888888888888888888888888  88888887

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=83.40  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCC--CCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            4677788888888888888888888888888888877  7888763

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.6e-13  Score=84.44  Aligned_cols=44  Identities=23%  Similarity=0.422  Sum_probs=41.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGE--KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCC--CSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCC--CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 99999976

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.27  E-value=1.5e-12  Score=81.62  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=34.4

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGE--SGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCC--CSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCC--CCCCCC
Confidence            567788888888888888888888888888888888  788874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=83.04  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      |+++|++++||.|++|++.|.....|.+|+++|+++  +||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE--RPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSC--CSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCC--CCCCCCC
Confidence            677888888888888888888888888888888888  7888864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.3e-13  Score=84.49  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=42.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~h~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGE--KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSS--CCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCC--cCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            699999999  999999999999999999999999995 99999988

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=83.27  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE--NPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSS--CCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4777788888888888888888888888888888887  7888864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=83.07  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=33.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTC--CCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            4677777777888888888888888888888788777  7777753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=83.33  Aligned_cols=44  Identities=20%  Similarity=0.322  Sum_probs=35.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCS--CCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCC--CCCCCCC
Confidence            4677788888888888888888888888888888887  7888763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=83.02  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=36.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|.....|.+|+++|+++  +||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE--RPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCC--CCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4777888888888888888888888888888888888  7888864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=84.13  Aligned_cols=44  Identities=20%  Similarity=0.365  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++|
T Consensus         2 ~H~~~h~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGE--KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSC--CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCC--CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=83.96  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.+...|++|+++|++ ++|.|++|
T Consensus         2 ~h~~~h~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGE--KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSC--CSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCC--CCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 99999988

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=83.21  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSC--CSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCC--CCcCCCC
Confidence            4677788888888888888888888888888888887  7888764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.26  E-value=1.2e-12  Score=83.99  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|.....|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTS--CSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4677777777788888888888888888887777777  7777764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=83.67  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=34.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||+|.+|++.|...+.|.+|+++|+++  +||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGE--KPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSS--SCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            3677778888888888888888888888888888877  7887763

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=83.66  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      +|+++|+++  ++|.|++|++.|.+...|..|+++|++ ++|.|++|
T Consensus         2 ~h~~~h~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGV--NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCC--CSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCC--CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999988

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=83.32  Aligned_cols=44  Identities=20%  Similarity=0.358  Sum_probs=35.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSS--SSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4677788888888888888888888888888888887  7888864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=82.91  Aligned_cols=44  Identities=25%  Similarity=0.435  Sum_probs=35.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSS--CCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            4677788888888888888888888888888888887  7888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=82.45  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ--SGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSS--CSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCC--CCCCCC
Confidence            5778888888888888888888888888888888887  788874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=82.85  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCS--CCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4677788888888888888888888888888888877  7888763

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.5e-12  Score=83.44  Aligned_cols=44  Identities=25%  Similarity=0.409  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~h~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGE--KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCC--CSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCC--CCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999988

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.4e-12  Score=83.61  Aligned_cols=44  Identities=23%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCC--SCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCC--CCCCCCC
Confidence            4677777777778877888888777787787777777  7777763

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=83.54  Aligned_cols=43  Identities=26%  Similarity=0.383  Sum_probs=35.8

Q ss_pred             hhccCCCCccccccccccccChhHHHhhhhccCcccccccccccc
Q 039095           32 ASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        32 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      +++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE--KPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHC--CCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            56788888888888888888888888888888888  78888877

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.2e-12  Score=82.68  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGE--KPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSC--CCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCC--CCCCCCC
Confidence            4677788888888888888888888888888888877  7888763

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=2.3e-12  Score=83.42  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcccccccccccchh
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGK   78 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k   78 (492)
                      .|.++++|.|.+|++.|.....|.+|+++|+++  +||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE--KPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSC--CCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCC--CCccCCCCCC
Confidence            466777788888888888888888888888877  7888888774

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2e-12  Score=82.90  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=35.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|.....|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSC--CSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            4677788888888888888888888888888888887  7888763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=83.34  Aligned_cols=44  Identities=23%  Similarity=0.405  Sum_probs=33.1

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCC--CCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            4667777777777777777777777777777777777  7777764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=80.67  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVK--SGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCC--SSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCC--CCCCCC
Confidence            567788888888888888888888888888888887  788774

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=81.60  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=35.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE--SGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCS--SSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCC--CCCCCC
Confidence            4777888888888888888888888888888888888  788874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=2e-12  Score=82.48  Aligned_cols=43  Identities=26%  Similarity=0.429  Sum_probs=36.4

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCcccccccccccch
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECG   77 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~   77 (492)
                      ..|++++||.|.+|++.|...+.|.+|+++|+++  ++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~--~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS--VGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCC--CCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCC--CCCCCcCCC
Confidence            3578888888888888888888888888888888  888888886

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=80.64  Aligned_cols=41  Identities=24%  Similarity=0.459  Sum_probs=32.9

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS--GPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCC--SCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCC--CCCCC
Confidence            677788888888888888888888888888888877  77776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.6e-12  Score=83.36  Aligned_cols=44  Identities=27%  Similarity=0.402  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSRE--KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCC--CCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCC--CCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=82.17  Aligned_cols=43  Identities=21%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGE--SGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTS--SCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCC--CCCCCC
Confidence            4777788888888888888888888888888888887  788874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.6e-12  Score=82.38  Aligned_cols=44  Identities=25%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCc-cccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSR-RERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~-~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|++ +  +||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGV--KSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCC--TTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            477888888899999999999999999999888888 7  8888864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=82.74  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSS--CCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            4677788888888888888888888888888888877  7888764

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=3.8e-12  Score=82.39  Aligned_cols=42  Identities=21%  Similarity=0.423  Sum_probs=34.9

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTT  378 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  378 (492)
                      .+.++++|.|++|++.|.+...|.+|+++|++++||.|.+|+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            567889999999999999999999999999955555554443

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=83.39  Aligned_cols=44  Identities=30%  Similarity=0.419  Sum_probs=41.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~h~~~h~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGE--KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSC--CSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCC--CCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 99999988

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2e-12  Score=82.92  Aligned_cols=43  Identities=26%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQE--TLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSC--CSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            4667777777777777777777777777777777777  777775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.9e-12  Score=82.13  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=34.5

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE--RSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSC--CSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            3677788888888888888888888888888888887  788875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.7e-12  Score=81.40  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+++  +||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK--SGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCC--CCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCC--CCcCCC
Confidence            4677788888888888888888888888888888877  788774

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.23  E-value=2.2e-12  Score=85.85  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             CcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCccccccc
Q 039095           19 PKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERI   71 (492)
Q Consensus        19 ~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y   71 (492)
                      +|.|.....|..|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA--KPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT--SCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC--CCC
Confidence            356777777777877888888888888888888888888888888777  676

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.1e-12  Score=81.41  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=34.7

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      |+++|++++||.|.+|++.|.....|.+|+++|+++  +||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGE--KPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCS--CCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            667788888888888888888888888888888888  788885

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2e-12  Score=82.91  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSC--CCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            3667777777777777777777777777777777777  7777753

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.8e-12  Score=79.78  Aligned_cols=41  Identities=24%  Similarity=0.547  Sum_probs=34.5

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS--GPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCC--SSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCC--CCCCC
Confidence            677888888888888888888888888888888888  78877

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.3e-12  Score=82.59  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||+|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE--RHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCC--CBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCC--CCCCCC
Confidence            4677777777777777777777777777777777777  777775

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.8e-12  Score=82.63  Aligned_cols=44  Identities=27%  Similarity=0.458  Sum_probs=41.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhh-hccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMR-VHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~-~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  +||.|++|++.|.....|..|++ +|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGK--KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCC--CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCC--CCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            589999999  99999999999999999999999 9996 89999988

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.22  E-value=2.4e-12  Score=85.66  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=46.0

Q ss_pred             ccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchhhhhhhhhcc
Q 039095          350 NKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       350 ~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      +|.|.....|..|+++|+                                  +++||.|++|++.|.+.+.|.+|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~----------------------------------~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ----------------------------------SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT----------------------------------SSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcC----------------------------------CCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            477888888888888888                                  8899999999999999999999999999


Q ss_pred             cCCCC
Q 039095          430 VKNLD  434 (492)
Q Consensus       430 ~~~~~  434 (492)
                      ++++.
T Consensus        49 ~~kp~   53 (54)
T 1yui_A           49 FAKPG   53 (54)
T ss_dssp             TTSCC
T ss_pred             cCCCC
Confidence            88653

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=3.2e-12  Score=81.04  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK--SGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCC--CSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCC--CCCCCC
Confidence            4677777788888888888888888888888888777  777774

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.21  E-value=3.3e-12  Score=80.08  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=35.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      +|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||+|
T Consensus         1 ~H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~--k~~~C   42 (42)
T 2epc_A            1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS--GPSSG   42 (42)
T ss_dssp             CCCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCC--CCCCC
T ss_pred             CCCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCC--CCCCC
Confidence            3677888888888888888888888888888888888  78887

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.7e-12  Score=81.63  Aligned_cols=43  Identities=21%  Similarity=0.394  Sum_probs=34.8

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK--KPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCC--CCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            4677788888888888888888888888888888887  788875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.9e-12  Score=82.13  Aligned_cols=44  Identities=30%  Similarity=0.511  Sum_probs=41.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNES  103 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~C  103 (492)
                      .|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++|
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGE--KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCC--CSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCC--CCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 99999976

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.6e-12  Score=82.34  Aligned_cols=43  Identities=30%  Similarity=0.540  Sum_probs=32.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|++|++.|...+.|.+|+++|+++  +||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE--KSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHT--TCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCC--CCCCCC
Confidence            4667777777777777777777777777777777777  777775

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8.7e-12  Score=79.85  Aligned_cols=41  Identities=29%  Similarity=0.518  Sum_probs=36.5

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKT  377 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  377 (492)
                      .|+++++|.|++|++.|.+...|.+|+++|++++||+|.+|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999997776666655

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.9e-12  Score=81.04  Aligned_cols=43  Identities=30%  Similarity=0.478  Sum_probs=40.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGE--KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCS--SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCC--cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.20  E-value=3.8e-12  Score=87.35  Aligned_cols=52  Identities=15%  Similarity=0.350  Sum_probs=42.6

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .|+++++|.|++||+.|.....|.   ++|+                                  +++||.|++|++.|.
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~~l~---~~H~----------------------------------~~k~~~C~~C~k~f~   50 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLEANQ---LFDP----------------------------------MTGTFRCTFCHTEVE   50 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHH---HEET----------------------------------TTTEEBCSSSCCBCE
T ss_pred             HcCCCCCccCCCCCchhccHHHhH---hhcC----------------------------------CCCCEECCCCCCccc
Confidence            577888888888888888887776   6677                                  889999999999999


Q ss_pred             Cchhhhhhh
Q 039095          417 TGQALGGHK  425 (492)
Q Consensus       417 ~~~~L~~H~  425 (492)
                      ...++..+.
T Consensus        51 ~~~~~~~~~   59 (62)
T 1vd4_A           51 EDESAMPKK   59 (62)
T ss_dssp             ECTTCSCCC
T ss_pred             cCccccccc
Confidence            888776553

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.7e-12  Score=81.14  Aligned_cols=43  Identities=30%  Similarity=0.477  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGG--KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSS--CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCC--CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.3e-12  Score=81.33  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  ++|.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGE--KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCC--cCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.19  E-value=3.7e-12  Score=81.63  Aligned_cols=43  Identities=23%  Similarity=0.462  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGE--KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--CSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCC--CCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            599999999  999999999999999999999999996 8999975

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.9e-12  Score=82.18  Aligned_cols=43  Identities=28%  Similarity=0.518  Sum_probs=32.0

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      .|+++|++++||.|.+|++.|.....|.+|+++|+++  +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT--DPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHS--CCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            4667777777777777777777777777777777777  777774

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.1e-12  Score=81.42  Aligned_cols=43  Identities=26%  Similarity=0.443  Sum_probs=40.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||+|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGE--RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCC--CCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCC--CCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.1e-12  Score=91.22  Aligned_cols=66  Identities=20%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             ccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc
Q 039095           25 FSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        25 ~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      ...|..|++.|.+.+||.|..|++.|. .+.|..|+ .|.++  +||.|+.|++.|. +..|..|+++|.+
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~--~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGA--RTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHH--CEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCC--CceEcccCCCcCc-HHHHHHHHHHccC
Confidence            457889999999999999999999994 99999999 89999  9999999999987 6999999999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=6.1e-12  Score=80.15  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTT  378 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  378 (492)
                      .|+++++|.|++|++.|.....|..|+++|+++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            678899999999999999999999999999966666666654

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.1e-12  Score=80.97  Aligned_cols=43  Identities=19%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  ++|.|++|++.|....+|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGE--KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSC--CSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCC--CCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999975

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.7e-12  Score=79.83  Aligned_cols=41  Identities=20%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS--GPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSC--CSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCC--CCCCC
Confidence            667777888888888888888888888888888777  77776

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.7e-12  Score=81.12  Aligned_cols=43  Identities=21%  Similarity=0.406  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGE--KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCC--CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCC--cCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.6e-12  Score=81.67  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=40.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGE--KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSC--CSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCC--cCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.1e-12  Score=80.98  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ +||.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGE--KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSC--CSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCC--cCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            699999999  999999999999999999999999995 9999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.3e-12  Score=81.34  Aligned_cols=43  Identities=28%  Similarity=0.406  Sum_probs=40.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGE--KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCC--CCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCC--CCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.18  E-value=5.9e-12  Score=78.91  Aligned_cols=41  Identities=27%  Similarity=0.418  Sum_probs=38.9

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      |+++|+++  ++|+|++|++.|.....|.+|+++|++ ++|.|+
T Consensus         1 H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGE--NPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSC--CSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCC--CCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            78999999  999999999999999999999999996 899985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.5e-12  Score=80.37  Aligned_cols=42  Identities=24%  Similarity=0.504  Sum_probs=31.9

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK--SGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCC--CCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCC--CCCCC
Confidence            4667777777777777777777777777777777777  77776

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5e-12  Score=81.02  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.+..+|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGE--KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCC--CSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCC--CCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999975

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=6.7e-12  Score=79.52  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=33.4

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCcccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      |+++|++++||.|++|++.|...+.|.+|+++|+++  +||+|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE--SGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTS--CCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCC--CCCCCC
Confidence            567778888888888888888888888888888877  788774

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6e-12  Score=80.64  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGE--KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCS--CCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCC--CCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.1e-12  Score=80.60  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=40.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGE--KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCC--CCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCC--CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 9999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.7e-12  Score=80.73  Aligned_cols=43  Identities=28%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||+|++|++.|.....|+.|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQ--RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCS--SSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCC--cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            589999999  999999999999999999999999996 9999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7e-12  Score=78.55  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=38.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRAC  100 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C  100 (492)
                      +|+++|+++  +||.|++|++.|....+|..|+++|++ ++|.|
T Consensus         1 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGE--KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSC--CSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCC--CCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999  999999999999999999999999996 89987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6.5e-12  Score=80.47  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  ++|.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGE--NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSC--CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCC--CCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            599999999  999999999999999999999999996 8999975

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.2e-12  Score=80.92  Aligned_cols=43  Identities=28%  Similarity=0.520  Sum_probs=40.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+.
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGE--KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSC--CSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCC--CCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.8e-12  Score=80.71  Aligned_cols=43  Identities=26%  Similarity=0.469  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  ++|.|++|++.|....+|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGE--KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--CCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCC--CCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.7e-12  Score=80.08  Aligned_cols=43  Identities=23%  Similarity=0.381  Sum_probs=40.3

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~h~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGE--KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSC--CSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCC--cccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 9999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.7e-12  Score=78.36  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=38.7

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      |+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|.
T Consensus         1 H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGE--KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSC--CSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCC--CCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            78999999  999999999999999999999999996 899985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.4e-12  Score=79.26  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=35.8

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      +.++|++++||.|.+|++.|.....|.+|+++|+++  +||.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE--KSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSC--CCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCC--CCCCCCC
Confidence            456788888888888888888888888888888888  8888864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=80.33  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=37.5

Q ss_pred             hhhccCCCCccccc--cccccccChhHHHhhhhccCcccccccccccc
Q 039095           31 AASASASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERIQCKEC   76 (492)
Q Consensus        31 H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C   76 (492)
                      |.++|++++||.|.  .|++.|...+.|.+|+++|+++  +||+|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV--KPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCC--CSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            56678888888887  7888888888888888888888  88888887

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8e-12  Score=80.02  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=40.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  ++|.|++|++.|.....|.+|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGE--RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSC--CCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCC--CCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            599999999  999999999999999999999999996 8999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.8e-12  Score=79.85  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=39.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGE--NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSC--CSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCC--cCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            599999999  999999999999999999999999996 899985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.6e-12  Score=79.30  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=39.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|+
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGM--KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSS--SSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCC--cCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            699999999  999999999999999999999999996 899985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=78.66  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      .|+++|++++||.|.+|++.|...+.|.+|+++|+++  +||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGV--SGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSC--SCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCC--CCCCC
Confidence            4777788888888888888888888888888888877  77776

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.7e-12  Score=80.40  Aligned_cols=43  Identities=19%  Similarity=0.370  Sum_probs=40.5

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||+|++|++.|.....|..|+++|++ ++|.|+.
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGE--KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSC--CCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCC--CCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 9999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.8e-12  Score=80.09  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~h~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGK--KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSS--CCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCC--CCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            689999999  999999999999999999999999996 9999975

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=7.2e-12  Score=79.39  Aligned_cols=42  Identities=19%  Similarity=0.341  Sum_probs=39.8

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTR--KRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCC--SSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCC--CCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            699999999  999999999999999999999999996 899985

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.4e-12  Score=80.52  Aligned_cols=43  Identities=26%  Similarity=0.499  Sum_probs=40.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|++
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGE--KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCC--CSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCC--cCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            699999999  999999999999999999999999995 8999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.6e-12  Score=79.29  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=39.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  ++|.|++|++.|....+|..|+++|++ ++|.|+
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGE--KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCC--CSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCC--CCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            699999999  999999999999999999999999996 899985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.3e-12  Score=80.53  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=36.8

Q ss_pred             cCCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcC
Q 039095          336 DDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKT  377 (492)
Q Consensus       336 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  377 (492)
                      ..|.++++|.|++|++.|.+...|..|+++|++++||.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367899999999999999999999999999997766666655

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=8.2e-12  Score=79.13  Aligned_cols=42  Identities=14%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|.
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGE--NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCC--CSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCC--CCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            699999999  999999999999999999999999996 899985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=79.51  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=40.2

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||.|++|++.|.....|.+|+++|++ ++|.|+.
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGK--KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCS--CSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCC--CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            489999999  999999999999999999999999996 9999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=79.10  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             hhccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           32 ASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        32 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      ++.|++++||.|.+|++.|...+.|.+|+++|+++  +||+|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSC--CCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCC--CCCCCCC
Confidence            56677788888888888888888888888888877  7888753

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.7e-12  Score=79.65  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=40.4

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+.
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGE--KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCC--CSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCC--CCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999996 8999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8e-12  Score=80.03  Aligned_cols=43  Identities=28%  Similarity=0.488  Sum_probs=40.4

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      +|+++|+++  +||+|++|++.|.....|..|+++|++ ++|.|+.
T Consensus         2 ~h~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGE--RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCC--CSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCC--CCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            699999999  999999999999999999999999995 9999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.3e-11  Score=77.30  Aligned_cols=40  Identities=18%  Similarity=0.408  Sum_probs=38.1

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRAC  100 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C  100 (492)
                      |+++|+++  +||+|++|++.|...+.|..|+++|++ ++|.|
T Consensus         2 H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGE--KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSS--CCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCC--CCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            88999999  999999999999999999999999996 89987

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=76.80  Aligned_cols=40  Identities=25%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             hccccCCCCcccCCccccccCCchhhhhhhhhcccCCCCC
Q 039095          396 EDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLDN  435 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~~  435 (492)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|+++++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            6677779999999999999999999999999999988763

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=76.88  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCccccccccccc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKE   75 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~   75 (492)
                      +.|++++||.|.+|++.|...+.|.+|+++|+++  +||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSD--KSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCT--TCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCC--CCccCCC
Confidence            4677888888888888888888888888888888  7888864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=78.55  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=40.1

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACNE  102 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~~  102 (492)
                      .|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+.
T Consensus         2 ~h~~~h~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGE--KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCS--SSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCC--CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            488999999  999999999999999999999999996 8999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.8e-11  Score=74.65  Aligned_cols=38  Identities=26%  Similarity=0.471  Sum_probs=35.1

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP  374 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  374 (492)
                      .|+++++|+|++|++.|.+...|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            57889999999999999999999999999998777776

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.5e-12  Score=78.82  Aligned_cols=42  Identities=21%  Similarity=0.435  Sum_probs=39.6

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|.
T Consensus         2 ~H~~~H~~~--~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDS--KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCC--CCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCC--CCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            699999999  999999999999999999999999996 899984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=2.3e-11  Score=76.53  Aligned_cols=40  Identities=15%  Similarity=0.291  Sum_probs=35.9

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCc
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVK  376 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  376 (492)
                      .|+++++|.|++|++.|.+...|..|+++|++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5788999999999999999999999999999777777753

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.9e-11  Score=86.16  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             CCCCcccc-CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCccc
Q 039095          329 ASDYDVFD-DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHT  407 (492)
Q Consensus       329 ~~~l~~h~-~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~  407 (492)
                      ...|..|. .+.+.+++.|+.|++.|. ...|..|+ .|.                                  +++||.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c----------------------------------~~~~~~   45 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC----------------------------------GARTEL   45 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH----------------------------------HHCEEE
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc----------------------------------CCCceE
Confidence            34566776 478888888888888884 88888888 777                                  889999


Q ss_pred             CCccccccCCchhhhhhhhhcccCCCC
Q 039095          408 CRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       408 C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      |+.|++.|. ...|..|+++|.++...
T Consensus        46 C~~C~~~~~-~~~l~~H~~~c~~~~~~   71 (75)
T 2d9k_A           46 CGNCGRNVL-VKDLKTHPEVCGREGSG   71 (75)
T ss_dssp             CSSSCCEEE-TTGGGTHHHHBTTBSSS
T ss_pred             cccCCCcCc-HHHHHHHHHHccCCcCC
Confidence            999999988 59999999999987554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.5e-11  Score=77.68  Aligned_cols=41  Identities=27%  Similarity=0.527  Sum_probs=36.8

Q ss_pred             cCCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCc
Q 039095          336 DDPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVK  376 (492)
Q Consensus       336 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  376 (492)
                      ..|+++++|+|++|++.|.+..+|..|+++|++++||+|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            46789999999999999999999999999999877777763

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1e-11  Score=79.50  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=39.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      +|+++|+++  +||.|++|++.|.....|..|+++|++ ++|.|+
T Consensus         2 ~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGE--KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCC--CSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCC--CCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            699999999  999999999999999999999999995 999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.3e-11  Score=77.21  Aligned_cols=40  Identities=15%  Similarity=0.377  Sum_probs=38.1

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhccc-Ccccc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRAC  100 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C  100 (492)
                      |+++|+++  +||.|++|++.|.+...|..|+++|++ ++|.|
T Consensus         2 H~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGE--KPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSS--CSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCC--CCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            88999999  999999999999999999999999996 89987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.10  E-value=3.7e-11  Score=75.18  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             hhccccCCCCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          395 IEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       395 ~h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      +|+++|++++||.|++|+++|.+++.|.+|+++|+++++.
T Consensus         1 ~H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CCCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CCCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            3667888999999999999999999999999999988765

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.8e-11  Score=74.66  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      ++|++++||.|++|++.|...+.|.+|+++|+++  +||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS--GPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCC--SCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCC--CCcCC
Confidence            4678888888888888888888888888888888  78887

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.09  E-value=4e-11  Score=72.62  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             hccccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          396 EDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |+++|++++||.|++|++.|.++..|.+|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566777999999999999999999999999999874

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.3e-11  Score=76.13  Aligned_cols=39  Identities=26%  Similarity=0.504  Sum_probs=35.7

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPV  375 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  375 (492)
                      .|+++++|+|++|++.|.+...|..|+++|++++||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999999999999999977777775

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=2.7e-11  Score=76.65  Aligned_cols=42  Identities=19%  Similarity=0.361  Sum_probs=39.3

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhccc-Cccccc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ-KLRACN  101 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~-k~~~C~  101 (492)
                      .|+++|+++  ++|.|++|++.|.....|..|+++|++ ++|.|+
T Consensus         2 ~h~~~h~~~--~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAK--TTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSS--CCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCC--cCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            488999999  999999999999999999999999996 899985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=6.9e-11  Score=75.57  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=35.5

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCC-CCCCCCC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSA-KRSSLPV  375 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~  375 (492)
                      .|+++++|.|++|++.|.+...|..|+++|++ ++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            67899999999999999999999999999997 7777765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=9.6e-12  Score=91.48  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=52.9

Q ss_pred             hhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhccc
Q 039095           29 NHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        29 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      ..|.++|++++||.|++|++.|...+.|.+|+++|+++  +||+|..|    ..+.+|..|+++|.+
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~e--kp~~C~~~----~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE--FQKRAKRQ----ERRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHH--HHHHCCCC----SCCCCCCCCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCC--CCcccchh----hhHHHHHhhhccccc
Confidence            33456799999999999999999999999999999999  89999765    467788889998875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.3e-11  Score=75.99  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             CCCCCCceecc--cCccccccchhhhhhcccCCCCCCCCCCcC
Q 039095          337 DPQKESEIRCQ--ACNKIFCSRRALGGHQRMHSAKRSSLPVKT  377 (492)
Q Consensus       337 ~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  377 (492)
                      .|+++++|+|+  .|++.|.+...|.+|+++|++++||+|..|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999998  899999999999999999997766666655

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.2e-11  Score=72.11  Aligned_cols=36  Identities=14%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             cccCCCCcccCCccccccCCchhhhhhhhhcccCCC
Q 039095          398 LMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNL  433 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~  433 (492)
                      ++|++++||.|++|+++|.+++.|.+|+++|+++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            567899999999999999999999999999998753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.6e-10  Score=69.50  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             cCCCCcccCCc--cccccCCchhhhhhhhhcccC
Q 039095          400 QRGNKEHTCRI--CLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       400 H~~~kpf~C~~--C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ++++|||+|++  |+++|.+++.|.+||++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56999999986  999999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.98  E-value=1.9e-10  Score=68.53  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=31.5

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +|++++||.|++|+++|.+++.|.+|+++|++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            3679999999999999999999999999999865

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.98  E-value=2e-10  Score=70.43  Aligned_cols=37  Identities=32%  Similarity=0.603  Sum_probs=33.3

Q ss_pred             CCCCCceecccCccccccchhhhhhcccCCCCCCCCC
Q 039095          338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP  374 (492)
Q Consensus       338 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  374 (492)
                      |+++++|.|++||+.|.+.+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4678999999999999999999999999998887765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.98  E-value=2.2e-10  Score=68.25  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=31.5

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +|++++||.|++|++.|.+++.|.+|+++|+++.
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3679999999999999999999999999999865

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=1.1e-10  Score=85.84  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CCCCCCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          337 DPQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       337 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .|+++++|.|++|++.|.+...|..|+++|+                                  +++||+|..|    .
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht----------------------------------~ekp~~C~~~----~   60 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHN----------------------------------EEFQKRAKRQ----E   60 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHH----------------------------------HHHHHHCCCC----S
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC----------------------------------CCCCcccchh----h
Confidence            5789999999999999999999999999999                                  7788888654    5


Q ss_pred             CchhhhhhhhhcccCC
Q 039095          417 TGQALGGHKRAHLVKN  432 (492)
Q Consensus       417 ~~~~L~~H~r~H~~~~  432 (492)
                      .+..|..|.++|.+..
T Consensus        61 ~~~~~~~~~~~~~~~~   76 (88)
T 1x6f_A           61 RRKQLLSKQKYADGAF   76 (88)
T ss_dssp             CCCCCCCCCCCCCCSS
T ss_pred             hHHHHHhhhccccccc
Confidence            6778888888887754

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=4.3e-10  Score=75.53  Aligned_cols=40  Identities=18%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             CCCCCCceeccc--Cccccccchhhhhhc-ccCCCCCCCCCCc
Q 039095          337 DPQKESEIRCQA--CNKIFCSRRALGGHQ-RMHSAKRSSLPVK  376 (492)
Q Consensus       337 ~~~~~~~~~C~~--C~k~F~~~~~L~~H~-~~H~~~k~~~C~~  376 (492)
                      ..+++|||+|++  |+|.|...++|.+|+ ++|+++|||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            567999999976  999999999999998 6999999998875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.5e-10  Score=68.98  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             ccccCCCCcccCCccccccCCchhhhhh-hhhcccC
Q 039095          397 DLMQRGNKEHTCRICLKVFATGQALGGH-KRAHLVK  431 (492)
Q Consensus       397 ~~~H~~~kpf~C~~C~k~F~~~~~L~~H-~r~H~~~  431 (492)
                      +++|++++||.|++|+++|.+++.|.+| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3567899999999999999999999999 9999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.93  E-value=3.9e-10  Score=69.03  Aligned_cols=37  Identities=30%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             cCCCCccccccccccccChhHHHhhhhccCccccccccc
Q 039095           35 SASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQC   73 (492)
Q Consensus        35 H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C   73 (492)
                      |++++||.|.+|++.|...+.|..|+++|+++  +||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRD--RARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCS--CTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCC--cccee
Confidence            56788888888888888888888888888888  78876

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.4e-10  Score=68.41  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             cccCCCCcccCCccccccCCc-hhhhhhhhhcccCC
Q 039095          398 LMQRGNKEHTCRICLKVFATG-QALGGHKRAHLVKN  432 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~-~~L~~H~r~H~~~~  432 (492)
                      ++|++++||.|++|++.|.++ +.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            467799999999999999999 99999999998753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.91  E-value=4.7e-10  Score=67.79  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             hhhccCCCCccccccccccccChhHHHhhhhccCc
Q 039095           31 AASASASTQESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        31 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      |++.|++++||+|++|++.|...+.|.+|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            44555555555555555555555555555555554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.91  E-value=3.7e-10  Score=72.73  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhh-hcccCCCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKR-AHLVKNLD  434 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r-~H~~~~~~  434 (492)
                      +|+++|||.|.+|+++|.++..|.+|++ +|+++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            4779999999999999999999999999 99987665

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=6.3e-10  Score=66.73  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      .|++++||.|++|++.|.+++.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            577999999999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6.9e-10  Score=66.54  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             cccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          398 LMQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      +.|++++||.|++|++.|.+...|.+|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            3577999999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.87  E-value=4.9e-10  Score=65.69  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             CceecccCccccccchhhhhhcccCCCCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKRSSL  373 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~  373 (492)
                      +||.|++||+.|.+...|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57999999999999999999999999888775

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.6e-10  Score=66.35  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +|++++||.|++|++.|.++..|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5779999999999999999999999999998753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=5.7e-10  Score=67.38  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             hccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ++|++++||.|.+|++.|...+.|.+|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4567777777777777777777777777777766

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.2e-09  Score=65.38  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=31.4

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +|++++||.|++|++.|.++..|.+|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4679999999999999999999999999998763

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=1.3e-09  Score=73.24  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             cCCCCcccccc--ccccccChhHHHhhh-hccCcccccccccc
Q 039095           35 SASTQESQCKV--CGKDFESLKALYGHM-RHHSRRERERIQCK   74 (492)
Q Consensus        35 H~~~~~~~C~~--C~k~F~~~~~L~~H~-r~H~~~~~k~y~C~   74 (492)
                      .++++||+|..  |+|.|...++|.+|+ ++|+++  +||-|-
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgE--KP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSD--LPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSC--CCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCC--CCcccc
Confidence            56777777754  777777777777776 577777  777764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.84  E-value=6e-10  Score=64.78  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             CceecccCccccccchhhhhhcccCCCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKRSS  372 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~  372 (492)
                      +||.|++||+.|.+.++|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5799999999999999999999999987776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.80  E-value=2.2e-09  Score=63.78  Aligned_cols=33  Identities=18%  Similarity=0.431  Sum_probs=25.0

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +|++++||.|.+|++.|...+.|.+|+++|+++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            366777777777777777777777777777776

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.78  E-value=2.2e-09  Score=63.78  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             cCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           35 SASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        35 H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      |++++||.|.+|++.|...+.|.+|+++|+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            66777777777777777777777777777776

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.2e-09  Score=64.29  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=30.9

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      .|++++||.|++|++.|.+...|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3668999999999999999999999999998753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=2e-09  Score=64.60  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=22.1

Q ss_pred             cCCCCcccccc--ccccccChhHHHhhhhccCcc
Q 039095           35 SASTQESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        35 H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +++++||+|++  |++.|..++.|++|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56667777764  777777777777777777664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.75  E-value=2.8e-09  Score=64.24  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             ccCCCCcccCCc--cccccCCchhhhhhhhhcccCC
Q 039095          399 MQRGNKEHTCRI--CLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       399 ~H~~~kpf~C~~--C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      .|++++||.|.+  |+++|.+++.|.+|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367999999995  9999999999999999998763

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=1.2e-08  Score=69.63  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=32.3

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      .|+++|||+|.+|+++|.+++.|.+|+++|+++...
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~   42 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ   42 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccc
Confidence            466899999999999999999999999999986543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.73  E-value=3.3e-09  Score=62.01  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=23.5

Q ss_pred             CccccccccccccChhHHHhhhhccCcccccccc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHSRRERERIQ   72 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~   72 (492)
                      +||.|++|++.|...+.|..|+++|+++  +||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELL--GEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTT--CCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCC--CCCC
Confidence            4677777777777777777777777777  6664

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.5e-09  Score=63.79  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             hccCCCCccccccccccccChhHHHhh-hhccCcc
Q 039095           33 SASASTQESQCKVCGKDFESLKALYGH-MRHHSRR   66 (492)
Q Consensus        33 ~~H~~~~~~~C~~C~k~F~~~~~L~~H-~r~H~~~   66 (492)
                      ++|++++||+|+.|++.|...+.|.+| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            345666666666666666666666666 5666543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.71  E-value=3.3e-09  Score=67.85  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=31.6

Q ss_pred             ccccCCCCcccCC--ccccccCCchhhhhhhhhcccCC
Q 039095          397 DLMQRGNKEHTCR--ICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       397 ~~~H~~~kpf~C~--~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      ..+|++++||.|+  .|+++|.+++.|.+|+++|++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3456699999996  79999999999999999999763

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=5.7e-09  Score=63.26  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.5

Q ss_pred             cCCCCcccCC--ccccccCCchhhhhhhhhcccCCCC
Q 039095          400 QRGNKEHTCR--ICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       400 H~~~kpf~C~--~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      |++++||.|+  .|+++|.+++.|.+|+++|+++++.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5689999999  5999999999999999999987653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=6.8e-09  Score=62.05  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .|++++||.|.+|++.|...+.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466777777777777777777777777777765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8e-09  Score=61.74  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=23.6

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .|++++||+|.+|++.|...+.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            466677777777777777777777777777665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=5.6e-09  Score=62.89  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             ccCCCCccccccccccccCh-hHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESL-KALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~-~~L~~H~r~H~~~   66 (492)
                      +|++++||.|++|++.|... +.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            46666666666666666666 6666666666654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=8.7e-09  Score=61.55  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=23.2

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .|.+++||.|.+|++.|...+.|.+|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            466677777777777777777777777777665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=8.6e-09  Score=62.47  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             cCCCCccccc--cccccccChhHHHhhhhccCccccccc
Q 039095           35 SASTQESQCK--VCGKDFESLKALYGHMRHHSRRERERI   71 (492)
Q Consensus        35 H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~~~k~y   71 (492)
                      |++++||.|.  .|++.|...+.|.+|+++|+++  +||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT--LKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTT--TTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCC--CCC
Confidence            5667777887  4888888888888887777777  665

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.62  E-value=3.8e-09  Score=61.27  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             ccccccccccccChhHHHhhhhccCccccccc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERI   71 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y   71 (492)
                      ||.|.+|++.|...+.|.+|+++|+++  +||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIV--VAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSS--SSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccC--CCC
Confidence            566666666666666666666666665  554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.62  E-value=1.4e-08  Score=57.27  Aligned_cols=28  Identities=29%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |||.|++|++.|.+.+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            6899999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.4e-08  Score=60.58  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=23.9

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .|++++||.|.+|++.|.....|.+|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            466677777777777777777777777777765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=65.02  Aligned_cols=33  Identities=21%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             ccCCCCccccccccccccChhHHHhhhh-ccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMR-HHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r-~H~~~   66 (492)
                      +|++++||.|.+|++.|.....|.+|++ +|+++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            3566666777777777777777777766 66665

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.60  E-value=9.9e-09  Score=56.79  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=25.4

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      ++||.|++|+++|.+++.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            489999999999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.60  E-value=1.3e-08  Score=56.76  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=26.2

Q ss_pred             CCcccCCccccccCCchhhhhhhhhccc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      ++||.|++|++.|.+.+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4799999999999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.59  E-value=1.8e-08  Score=56.67  Aligned_cols=28  Identities=29%  Similarity=0.657  Sum_probs=26.5

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      +||.|++|+++|.+.+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.59  E-value=1.6e-08  Score=55.95  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=25.4

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      ++||.|++||++|.+.+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            489999999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=1.7e-08  Score=57.28  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      ++||.|++|++.|.+...|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            489999999999999999999999998753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.9e-08  Score=59.99  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      .|.+++||.|++|++.|.....|.+|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            356667777777777777777777777777665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.56  E-value=1.4e-08  Score=61.10  Aligned_cols=34  Identities=32%  Similarity=0.691  Sum_probs=30.7

Q ss_pred             CCCCCCceeccc--CccccccchhhhhhcccCCCCC
Q 039095          337 DPQKESEIRCQA--CNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       337 ~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      .|+++++|.|++  ||+.|.+.+.|.+|+++|+|++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            467899999995  9999999999999999999764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=3.3e-08  Score=57.17  Aligned_cols=29  Identities=31%  Similarity=0.536  Sum_probs=27.2

Q ss_pred             CCcccCC--ccccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCR--ICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~--~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ++||.|+  .|+++|.+.+.|.+|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4899999  8999999999999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=1.4e-08  Score=64.83  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=24.1

Q ss_pred             hhhccCCCCccccc--cccccccChhHHHhhhhccCcc
Q 039095           31 AASASASTQESQCK--VCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        31 H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      |...|++++||.|.  .|++.|...+.|.+|+++|+++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            33447777777774  5777777777777777777665

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.55  E-value=2.9e-08  Score=56.89  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=26.8

Q ss_pred             CcccCC--ccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCR--ICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~--~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +||.|+  +|+++|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            689998  99999999999999999999763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=8.9e-09  Score=58.09  Aligned_cols=28  Identities=32%  Similarity=0.532  Sum_probs=26.5

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      +||.|++|+++|.+.+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            6899999999999999999999999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.54  E-value=2.1e-08  Score=59.08  Aligned_cols=27  Identities=19%  Similarity=0.306  Sum_probs=25.0

Q ss_pred             cCCCCcccCCccccccCCchhhhhhhh
Q 039095          400 QRGNKEHTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       400 H~~~kpf~C~~C~k~F~~~~~L~~H~r  426 (492)
                      ++|+|||.|++|+|+|.++++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            348999999999999999999999984

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=55.95  Aligned_cols=29  Identities=34%  Similarity=0.591  Sum_probs=26.9

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |||.|++|+++|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            68999999999999999999999998763

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.54  E-value=1.8e-08  Score=59.38  Aligned_cols=22  Identities=36%  Similarity=0.680  Sum_probs=11.9

Q ss_pred             cccccccchhhhcChhhHhhhh
Q 039095           69 ERIQCKECGKALLSAKSLSNHM   90 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~   90 (492)
                      +||+|++||++|+..++|++|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            5555555555555555555555

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.53  E-value=2.5e-08  Score=56.15  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=26.7

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +||.|++||+.|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            57999999999999999999999999753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.53  E-value=3e-08  Score=56.23  Aligned_cols=30  Identities=17%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCC
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +++|.|++||+.|.+...|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999999754

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=1.1e-08  Score=58.20  Aligned_cols=29  Identities=34%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ++||.|++|++.|.+.+.|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            47999999999999999999999999875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=3.1e-08  Score=67.55  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             cCcccccccccccchhhhcChhhHhhhhhhcccCcccccccC
Q 039095           63 HSRRERERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESG  104 (492)
Q Consensus        63 H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~  104 (492)
                      |.++  +||+|.+|+++|....+|++|+++|++....+.+++
T Consensus         8 ~~~e--kpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~   47 (66)
T 2epp_A            8 LREA--GILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYID   47 (66)
T ss_dssp             CCCC--CCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCC
T ss_pred             CCCc--cCcCCCCCCCccCCHHHHHhhhhhhCCCcccccccc
Confidence            4555  677777777777777777777777766555555554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.52  E-value=3.9e-08  Score=54.23  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=24.2

Q ss_pred             cccCCccccccCCchhhhhhhhhcccC
Q 039095          405 EHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ||.|++|++.|.+++.|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            699999999999999999999999863

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.51  E-value=4.3e-08  Score=55.55  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +||.|++|++.|.+.+.|..|+++|+++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            58999999999999999999999998764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.51  E-value=2.8e-08  Score=55.86  Aligned_cols=29  Identities=34%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +||.|++|++.|.+...|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            68999999999999999999999998763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=57.20  Aligned_cols=29  Identities=28%  Similarity=0.583  Sum_probs=26.6

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +||.|++||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            57999999999999999999999999653

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=1.5e-08  Score=55.46  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=24.6

Q ss_pred             CcccCCccccccCCchhhhhhhhhcc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |||.|++||++|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999999999999999999999984

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.47  E-value=4.9e-08  Score=55.91  Aligned_cols=29  Identities=28%  Similarity=0.597  Sum_probs=26.6

Q ss_pred             Cceecc--cCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQ--ACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +||.|+  .||+.|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            579998  99999999999999999999764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.46  E-value=3.4e-08  Score=55.51  Aligned_cols=29  Identities=24%  Similarity=0.635  Sum_probs=26.6

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999753

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.45  E-value=6.6e-08  Score=55.82  Aligned_cols=30  Identities=27%  Similarity=0.596  Sum_probs=27.3

Q ss_pred             CCceecc--cCccccccchhhhhhcccCCCCC
Q 039095          341 ESEIRCQ--ACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       341 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +++|.|+  .||+.|.+...|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4689999  89999999999999999999764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=2.2e-08  Score=56.88  Aligned_cols=30  Identities=27%  Similarity=0.565  Sum_probs=27.2

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCC
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +++|.|++||+.|.+...|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            368999999999999999999999999653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.44  E-value=6.5e-08  Score=53.35  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=12.5

Q ss_pred             CccccccccccccChhHHHhhhhcc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H   63 (492)
                      +||.|++|++.|...+.|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=8.6e-08  Score=54.31  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             CcccCCccccccCCchhhhhh-hhhcccC
Q 039095          404 KEHTCRICLKVFATGQALGGH-KRAHLVK  431 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H-~r~H~~~  431 (492)
                      +||.|++|++.|.+.+.|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            589999999999999999999 7899875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.43  E-value=8.2e-08  Score=53.43  Aligned_cols=26  Identities=35%  Similarity=0.689  Sum_probs=14.1

Q ss_pred             CccccccccccccChhHHHhhhhccC
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~   64 (492)
                      +||.|.+|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45555555555555555555555554

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=3.6e-08  Score=55.43  Aligned_cols=29  Identities=31%  Similarity=0.738  Sum_probs=26.7

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      ++|.|++|++.|.+...|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            57999999999999999999999998764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.41  E-value=6.2e-08  Score=54.88  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             CceecccCccccccchhhhhhcccCCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKRS  371 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  371 (492)
                      ++|.|++||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999997653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=9.1e-08  Score=52.71  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=12.0

Q ss_pred             CccccccccccccChhHHHhhhhcc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H   63 (492)
                      +||.|.+|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3444444444444444444444444

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.39  E-value=1.3e-07  Score=52.06  Aligned_cols=26  Identities=31%  Similarity=0.604  Sum_probs=17.0

Q ss_pred             ccccccccccccChhHHHhhhhccCc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      ||.|.+|++.|...+.|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46666666666666666666666664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.39  E-value=1.2e-07  Score=53.75  Aligned_cols=29  Identities=34%  Similarity=0.627  Sum_probs=26.4

Q ss_pred             CceecccCccccccchhhhhh-cccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGH-QRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H-~~~H~~~k  370 (492)
                      ++|.|+.||+.|.+...|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999 79999764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=5.3e-08  Score=54.68  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=26.6

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            57999999999999999999999998653

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.69  E-value=5.9e-08  Score=52.96  Aligned_cols=26  Identities=31%  Similarity=0.612  Sum_probs=24.3

Q ss_pred             CceecccCccccccchhhhhhcccCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~  367 (492)
                      +||.|++||+.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999985

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.27  E-value=2.5e-07  Score=51.81  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             CcccCC--ccccccCCchhhhhhhhhccc
Q 039095          404 KEHTCR--ICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~--~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      +||.|+  .|++.|.+.+.|.+|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.07  E-value=1.3e-06  Score=48.70  Aligned_cols=25  Identities=28%  Similarity=0.648  Sum_probs=14.8

Q ss_pred             ccccc--cccccccChhHHHhhhhccC
Q 039095           40 ESQCK--VCGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        40 ~~~C~--~C~k~F~~~~~L~~H~r~H~   64 (492)
                      ||.|.  .|++.|...+.|.+|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45565  66666666666666665554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.55  E-value=4.1e-05  Score=51.78  Aligned_cols=57  Identities=18%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             eeccc--Cccccccchhhhhhc-ccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCC--ccccccCCc
Q 039095          344 IRCQA--CNKIFCSRRALGGHQ-RMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCR--ICLKVFATG  418 (492)
Q Consensus       344 ~~C~~--C~k~F~~~~~L~~H~-~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~--~C~k~F~~~  418 (492)
                      |.|..  |++.|.+...|..|+ +.|.+.++-                            ....+|.|.  .|++.+...
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~----------------------------~~~~~~~C~W~~C~~~~~~~   53 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFK----------------------------HPMEPLACNWEDCDFLGDDT   53 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCC----------------------------CSSCCEECCCSSCCCEESSH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccC----------------------------CCCCCCEeeCCCCcCCCCCh
Confidence            45654  999999999999998 589854310                            023489997  999999999


Q ss_pred             hhhhhhhhhc
Q 039095          419 QALGGHKRAH  428 (492)
Q Consensus       419 ~~L~~H~r~H  428 (492)
                      ..|..|+++.
T Consensus        54 ~~L~~Hir~~   63 (64)
T 1zw8_A           54 ASIVNHINAQ   63 (64)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhcccc
Confidence            9999999975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.53  E-value=9.8e-06  Score=61.85  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=27.7

Q ss_pred             cccCCCCcccCCccccccCCchhhhhhhhhc
Q 039095          398 LMQRGNKEHTCRICLKVFATGQALGGHKRAH  428 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H  428 (492)
                      .-|+|++||.|.+|++.|.+.+.|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3467999999999999999999999998753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.43  E-value=6.2e-05  Score=50.88  Aligned_cols=49  Identities=24%  Similarity=0.471  Sum_probs=34.2

Q ss_pred             cccccccChhHHHhhh-hccCccc---c-cccccc--cchhhhcChhhHhhhhhhc
Q 039095           45 VCGKDFESLKALYGHM-RHHSRRE---R-ERIQCK--ECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        45 ~C~k~F~~~~~L~~H~-r~H~~~~---~-k~y~C~--~C~k~F~~~~~L~~H~~~H   93 (492)
                      .|++.|.+...|..|+ +.|.+..   . .+|.|.  .|++.+.....|..|+++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4777788777787776 4676551   0 267786  6877777777788887754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.16  E-value=0.00011  Score=57.43  Aligned_cols=81  Identities=17%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             CCceecccCccccccchhhhhhc--ccCCCC-CCCCCCcCCCCCC-CCcccchhhhhhhhccccCCCCcccCCccccccC
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQ--RMHSAK-RSSLPVKTTMFTE-TEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFA  416 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~--~~H~~~-k~~~C~~C~~~~~-~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~  416 (492)
                      .+++.|.+|+..|.+.+.+..|.  +.|... +.|.+. ++.... ........    .+...+.+.+.|.|.+|++.|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~C~~~f~  104 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDRSKCCPVCNMTFS  104 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCTTTEETTTTEECS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCcccCCCCCccCCC----ccccccCCCCCeEcCCCCCEeC
Confidence            35689999999999999999998  567532 222221 110000 00000000    1223456788999999999999


Q ss_pred             Cchhhhhhhh
Q 039095          417 TGQALGGHKR  426 (492)
Q Consensus       417 ~~~~L~~H~r  426 (492)
                      +...|..|+.
T Consensus       105 s~~~~~~H~~  114 (127)
T 1zu1_A          105 SPVVAESHYI  114 (127)
T ss_dssp             SHHHHHHHHT
T ss_pred             CHHHHHHHHC
Confidence            9999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.93  E-value=0.00024  Score=54.22  Aligned_cols=34  Identities=15%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             hhhhccCcccccccccccchhhhcChhhHhhhhhhc
Q 039095           58 GHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        58 ~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H   93 (492)
                      .+...|+|+  ++|.|..|++.|.+.+.|..|+++.
T Consensus        40 ~~ded~tGe--kpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           40 EFDPDLPGG--GLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSCSSSGGG--GCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccccCCCC--cceEcccCcchhCCHHHHHHHHhhh
Confidence            356779998  8999999999999999999998864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.78  E-value=0.00015  Score=56.78  Aligned_cols=75  Identities=11%  Similarity=-0.004  Sum_probs=37.5

Q ss_pred             CccccCCCCcccccccchhhhh--hccCCC-Cccccccc------cccccChhHHHhhhhccCcccccccccccchhhhc
Q 039095           11 ISYDLRENPKKSWKFSSFNHAA--SASAST-QESQCKVC------GKDFESLKALYGHMRHHSRRERERIQCKECGKALL   81 (492)
Q Consensus        11 ~~~~C~~C~k~f~~~~~l~~H~--~~H~~~-~~~~C~~C------~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~   81 (492)
                      +++.|.+|...|.+...+..|.  +.|... +.|.+..+      ++.|...    .+...+.+.  +.|.|.+|.+.|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~C~~C~~~f~  104 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGED--RSKCCPVCNMTFS  104 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCC--TTTEETTTTEECS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCC--CCeEcCCCCCEeC
Confidence            4456666666666666665555  334322 23333110      1122111    122233333  5667777777777


Q ss_pred             ChhhHhhhhh
Q 039095           82 SAKSLSNHMR   91 (492)
Q Consensus        82 ~~~~L~~H~~   91 (492)
                      +...|..|+.
T Consensus       105 s~~~~~~H~~  114 (127)
T 1zu1_A          105 SPVVAESHYI  114 (127)
T ss_dssp             SHHHHHHHHT
T ss_pred             CHHHHHHHHC
Confidence            7777777765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.89  E-value=0.0033  Score=37.81  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             CcccCCccccccCCchhhhhhhhhccc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      -+|.|+-|+..|.....|+.||+.-=+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            789999999999999999999995443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.74  E-value=0.0041  Score=37.43  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=14.8

Q ss_pred             CccccccccccccChhHHHhhhh
Q 039095           39 QESQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      .+|.|+.|+..|+....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45666666666666666666665

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.59  E-value=0.018  Score=32.51  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CcccCCccccccCCchhhhhhhh-hccc
Q 039095          404 KEHTCRICLKVFATGQALGGHKR-AHLV  430 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r-~H~~  430 (492)
                      ..|.|++|.+.|.+...|..|.. .|..
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            35999999999999999999965 5654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.18  E-value=0.071  Score=43.96  Aligned_cols=100  Identities=15%  Similarity=0.273  Sum_probs=65.4

Q ss_pred             cccCCCCcccccccchh-hhhhccCCCCcccc--ccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhh
Q 039095           13 YDLRENPKKSWKFSSFN-HAASASASTQESQC--KVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNH   89 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~-~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H   89 (492)
                      ..|+.|...+.....+. .-+..-.......|  .-|+..+. ...|..|+.. -.-  ++..|+.|+..+ .+..|..|
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~~-C~~--~~v~C~~C~~~~-~r~~l~~H  128 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQAH-CEF--ALMDCPQCQRPF-QKFHINIH  128 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHTT-CTT--SEEECTTTCCEE-EGGGHHHH
T ss_pred             CCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHhc-CCc--eeeECCCCChHH-HHHHHHHH
Confidence            38999998877643221 11111222456778  46887765 5568888743 333  688999999888 67789999


Q ss_pred             hhhcc-cCcccccccCchhhhHHhhhhhcc
Q 039095           90 MRVHS-QKLRACNESGAVKSLVLKKKRSKR  118 (492)
Q Consensus        90 ~~~H~-~k~~~C~~C~~~f~~~~~~~~h~~  118 (492)
                      +...- .+...|+.|+..+.. ..+..|..
T Consensus       129 ~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~  157 (170)
T 3hcs_A          129 ILKDCPRRQVSCDNCAASMAF-EDKEIHDQ  157 (170)
T ss_dssp             HHHTCTTCEEECTTTCCEEEG-GGHHHHHT
T ss_pred             hhhhCCCCCeECCCCCCccCH-HHHHhHHH
Confidence            86444 478889999976653 33344543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.90  E-value=0.064  Score=30.25  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=13.4

Q ss_pred             ccccccccccccChhHHHhhhh
Q 039095           40 ESQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      .|.|++|-+.|.+...|..|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            3666666666666666666643

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=90.55  E-value=0.41  Score=33.07  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             CCccccCCCCCCceec-ccCccccccchhhhhhccc
Q 039095          331 DYDVFDDPQKESEIRC-QACNKIFCSRRALGGHQRM  365 (492)
Q Consensus       331 ~l~~h~~~~~~~~~~C-~~C~k~F~~~~~L~~H~~~  365 (492)
                      +|..|...=.-.+-.| ..|+..+. +..|..|+..
T Consensus         4 ~l~~H~~~C~~~~v~C~~~C~~~v~-r~~l~~H~~~   38 (76)
T 2yuc_A            4 GSSGHLNTCSFNVIPCPNRCPMKLS-RRDLPAHLQH   38 (76)
T ss_dssp             SCSCCCCCCCCSCCBCTTCCSCBCC-SSSSTTTTTT
T ss_pred             HHHHHHHHCCCcccCCCccccHHhh-HhHHHhhCHh
Confidence            4444554445556677 46777654 4666666653

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=90.52  E-value=0.17  Score=35.13  Aligned_cols=51  Identities=20%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCcccc-ccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhh
Q 039095           38 TQESQC-KVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRV   92 (492)
Q Consensus        38 ~~~~~C-~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~   92 (492)
                      -.+-.| ..|+..+. +..|..|+...-..  ++..|.+|+..|. ...|..|...
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~--r~v~C~~C~~~~~-~~~l~~H~~~   65 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQHDCPK--RRLKCEFCGCDFS-GEAYESHEGM   65 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTTTSCTT--SCCCCSSSCCCCC-HHHHHHTTTS
T ss_pred             CcccCCCccccHHhh-HhHHHhhCHhhCCC--cceECCCCCCccC-HHHHHHHHhH
Confidence            344566 46766654 34566666655554  6677777776664 4456666643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=89.98  E-value=0.18  Score=41.47  Aligned_cols=79  Identities=11%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             Ccccc--CCCCcccccccchhhhhhccCCCCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhh
Q 039095           11 ISYDL--RENPKKSWKFSSFNHAASASASTQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSN   88 (492)
Q Consensus        11 ~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~   88 (492)
                      ....|  .-|+..+. ...|..|.. .=.-++..|+.|+..+ .+..|..|+...-..  ++-.|+.|+..|. ...|..
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~--r~~~C~~C~~~~~-~~~l~~  154 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPR--RQVSCDNCAASMA-FEDKEI  154 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTT--CEEECTTTCCEEE-GGGHHH
T ss_pred             cccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCC--CCeECCCCCCccC-HHHHHh
Confidence            34567  45766554 456677763 3334678999999998 677899999887777  8899999998875 567899


Q ss_pred             hhhhccc
Q 039095           89 HMRVHSQ   95 (492)
Q Consensus        89 H~~~H~~   95 (492)
                      |..++.|
T Consensus       155 H~~~~~~  161 (170)
T 3hcs_A          155 HDQNCPL  161 (170)
T ss_dssp             HHTTCCC
T ss_pred             HHHhCcC
Confidence            9998886

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.77  E-value=0.057  Score=36.58  Aligned_cols=19  Identities=26%  Similarity=0.637  Sum_probs=11.4

Q ss_pred             ccccccccccChhHHHhhhh
Q 039095           42 QCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        42 ~C~~C~k~F~~~~~L~~H~r   61 (492)
                      +|++||....... |..-|.
T Consensus        10 ~~PlCG~~L~W~e-LIeQML   28 (95)
T 2k5c_A           10 KCPICGSPLKWEE-LIEEML   28 (95)
T ss_dssp             ECSSSCCEECHHH-HHHHST
T ss_pred             cCCcCCCccCHHH-HHHHHH
Confidence            6777777766543 444443

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=89.59  E-value=0.12  Score=36.31  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      ..-..|-+||+.|.   .|++|+++|+|-.+.
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCHH
Confidence            44568999999999   588999998877664

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.46  E-value=0.27  Score=27.75  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=23.1

Q ss_pred             CCCcccCCccccccCCchhhhhhhhh
Q 039095          402 GNKEHTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      ...++.|..|+.+|..-.++..|++-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhee
Confidence            45679999999999999999999874

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=86.43  E-value=0.76  Score=28.63  Aligned_cols=21  Identities=10%  Similarity=-0.286  Sum_probs=15.6

Q ss_pred             cccCCCCcccccccchhhhhh
Q 039095           13 YDLRENPKKSWKFSSFNHAAS   33 (492)
Q Consensus        13 ~~C~~C~k~f~~~~~l~~H~~   33 (492)
                      -.|..|+..|.....++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            378888888888877777743

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.36  E-value=0.25  Score=34.65  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=23.5

Q ss_pred             CCCceecccCccccccchhhhhhcccCCCCCC
Q 039095          340 KESEIRCQACNKIFCSRRALGGHQRMHSAKRS  371 (492)
Q Consensus       340 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  371 (492)
                      ......|-+||+.|.   .|.+|+++|+|..|
T Consensus        18 ~~d~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           18 QDDHIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             CSSCEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             CCCceEecccchhhH---HHHHHHHHccCCCH
Confidence            345579999999999   58899999877654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.38  E-value=0.33  Score=33.18  Aligned_cols=6  Identities=0%  Similarity=-0.252  Sum_probs=2.2

Q ss_pred             ccCCCC
Q 039095           14 DLRENP   19 (492)
Q Consensus        14 ~C~~C~   19 (492)
                      .|..|+
T Consensus        12 ~C~~Cg   17 (79)
T 1wjv_A           12 TCNACG   17 (79)
T ss_dssp             EESSSC
T ss_pred             EcCCCC
Confidence            333333

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=83.55  E-value=0.58  Score=28.50  Aligned_cols=12  Identities=8%  Similarity=-0.260  Sum_probs=7.0

Q ss_pred             ccccCCCCcccc
Q 039095           12 SYDLRENPKKSW   23 (492)
Q Consensus        12 ~~~C~~C~k~f~   23 (492)
                      .|+|.+||.+|.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            466666666554

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=83.21  E-value=0.69  Score=26.12  Aligned_cols=24  Identities=0%  Similarity=-0.234  Sum_probs=13.1

Q ss_pred             CCccccCCCCcccccccchhhhhh
Q 039095           10 HISYDLRENPKKSWKFSSFNHAAS   33 (492)
Q Consensus        10 ~~~~~C~~C~k~f~~~~~l~~H~~   33 (492)
                      ...+.|..|+.+|.+...+..|++
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            344555555555555555555544

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=81.40  E-value=0.48  Score=34.50  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=16.0

Q ss_pred             cccccccchhhhcChhhHhhhhhhcccCcccccccC
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESG  104 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~  104 (492)
                      .||+|..||+.|.          .-.++|-+|+.|.
T Consensus        66 ~p~~C~~CG~~F~----------~~~~kPsrCP~Ck   91 (105)
T 2gmg_A           66 KPAQCRKCGFVFK----------AEINIPSRCPKCK   91 (105)
T ss_dssp             CCCBBTTTCCBCC----------CCSSCCSSCSSSC
T ss_pred             ECcChhhCcCeec----------ccCCCCCCCcCCC
Confidence            5677777777771          1124666777776

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=80.78  E-value=0.7  Score=25.00  Aligned_cols=21  Identities=33%  Similarity=0.887  Sum_probs=16.3

Q ss_pred             ccccccccccChhHHHhhhhc
Q 039095           42 QCKVCGKDFESLKALYGHMRH   62 (492)
Q Consensus        42 ~C~~C~k~F~~~~~L~~H~r~   62 (492)
                      -|.+|.|.++...+|..|+|-
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            577888888888888888764

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=80.10  E-value=0.52  Score=25.47  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             ccccccchhhhcChhhHhhhhhh
Q 039095           70 RIQCKECGKALLSAKSLSNHMRV   92 (492)
Q Consensus        70 ~y~C~~C~k~F~~~~~L~~H~~~   92 (492)
                      .-.|.+|.+.|+...+|..|++.
T Consensus         9 kqhcrfckkkysdvknlikhire   31 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999985

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=80.03  E-value=0.84  Score=28.43  Aligned_cols=21  Identities=14%  Similarity=0.390  Sum_probs=19.4

Q ss_pred             ccCCccccccCCchhhhhhhh
Q 039095          406 HTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r  426 (492)
                      =.|.+|+.+|..+..|..|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            489999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	1e-08
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	1e-05
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	2e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.004
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 403 NKEHTCRICLKVFATGQALGGHKRAH 428
            + +TC  C + F + QALGGH   H
Sbjct: 3   PRSYTCSFCKREFRSAQALGGHMNVH 28

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 42 QCKVCGKDFESLKALYGHMRHHSRRERER 70
           C  C ++F S +AL GHM  H RR+R R
Sbjct: 7  TCSFCKREFRSAQALGGHMNVH-RRDRAR 34

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 338 PQKESEIRCQACNKIFCSRRALGGHQRMHSAKRSSL 373
           P +     C  C + F S +ALGGH  +H   R+ L
Sbjct: 2   PPRSYT--CSFCKREFRSAQALGGHMNVHRRDRARL 35

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 7e-06
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 46 CGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH 93
          CGK F        HM  H         C  CGK       L  HM++H
Sbjct: 8  CGKSFTHKSQRDRHMSMH--LGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
          QC+ C +    +  L+ H+R H+
Sbjct: 5  QCRICMRNFSRSDHLTTHIRTHT 27

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
           C ECGKA   +  L  H RVH+
Sbjct: 9  GCVECGKAFSRSSILVQHQRVHT 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.72
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.53
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.42
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.35
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.33
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.32
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.29
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.29
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.28
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.24
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.23
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.22
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.18
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.16
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.14
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.12
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.12
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.08
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.07
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.03
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.99
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.95
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.91
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.87
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.86
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.79
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.62
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.28
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.25
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.23
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.22
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.21
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.21
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.21
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.19
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.11
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.1
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.94
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.94
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.91
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.87
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.86
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.81
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.8
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.79
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.76
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.75
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.72
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.72
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.69
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.69
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.66
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.59
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.54
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.46
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.45
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.39
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.25
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.08
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.67
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.61
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.33
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.26
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.25
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.25
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.22
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.87
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.7
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.7
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.55
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.45
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.43
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.37
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.63
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.57
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.48
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.32
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.87
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.83
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.75
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.69
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.44
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.33
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.62
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.71
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.23
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	90.87
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.8
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	90.7
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.39
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.25
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.11
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.79
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.7
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.24
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	88.56
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	82.36
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	81.31
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	81.02
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.77

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-19  Score=117.20  Aligned_cols=53  Identities=32%  Similarity=0.593  Sum_probs=51.0

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCCCCCCCcCCCCCCCCcccchhhhhhhhccccCCCCcccCCccccccCCchh
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQRGNKEHTCRICLKVFATGQA  420 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~~~~~~~~~~~~~~~~h~~~H~~~kpf~C~~C~k~F~~~~~  420 (492)
                      +|||+|+ ||++|....+|..|+++|+                                  |+|||.|++||++|.+.+.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht----------------------------------~ekpy~C~~C~k~F~~~~~   45 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL----------------------------------GLRPYGCGVCGKKFKMKHH   45 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS----------------------------------CCCSEECTTTSCEESSSHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc----------------------------------cccCCcCCCcCCEecCHHH
Confidence            5899995 9999999999999999999                                  8899999999999999999


Q ss_pred             hhhhhhhc
Q 039095          421 LGGHKRAH  428 (492)
Q Consensus       421 L~~H~r~H  428 (492)
                      |.+||++|
T Consensus        46 L~~H~r~H   53 (53)
T d2csha1          46 LVGHMKIH   53 (53)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhcC
Confidence            99999998

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.1e-19  Score=114.88  Aligned_cols=53  Identities=30%  Similarity=0.570  Sum_probs=45.7

Q ss_pred             CCccccccccccccChhHHHhhhhccCcccccccccccchhhhcChhhHhhhhhhc
Q 039095           38 TQESQCKVCGKDFESLKALYGHMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        38 ~~~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H   93 (492)
                      |+||+|+ ||+.|.....|.+|+++|+++  +||.|++||++|.+.+.|..||++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~e--kpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL--RPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCC--CSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccc--cCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5788884 888888888888888888888  8888888888888888888888877

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-15  Score=89.14  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=33.8

Q ss_pred             hccccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          396 EDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       396 h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |+++|+++|||+|++|||+|.+.++|.+|+|+|+|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            667777999999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.6e-15  Score=86.77  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             hhccccCCCCcccCCccccccCCchhhhhhhhhccc
Q 039095          395 IEDLMQRGNKEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       395 ~h~~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      +|.|+|+|+|||+|++|+++|+++++|.+|+++|.+
T Consensus         1 gh~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            467888899999999999999999999999999974

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-15  Score=83.53  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             ccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          399 MQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       399 ~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ||+|+|||+|.+||++|.+++.|.+|+|+|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            588999999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-15  Score=85.50  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             cccCCCCcccCCccccccCCchhhhhhhhhcccCC
Q 039095          398 LMQRGNKEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |+|+|+|||+|.+||++|.++++|.+||++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57889999999999999999999999999998764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.5e-15  Score=85.37  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCCceecccCccccccchhhhhhcc-cCCCCCCCCCCc
Q 039095          340 KESEIRCQACNKIFCSRRALGGHQR-MHSAKRSSLPVK  376 (492)
Q Consensus       340 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~  376 (492)
                      .+|||+|++|||.|...++|++|++ +|+|||||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999999999999999985 899777777763

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-14  Score=82.52  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             cccCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          398 LMQRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       398 ~~H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |+|+|+|||+|++|+++|+++++|++|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4788999999999999999999999998766554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-14  Score=84.03  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=25.2

Q ss_pred             hhhhccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           30 HAASASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        30 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +|+++|++++||.|++|||+|...++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4666666777777777777777777777777776664

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.8e-14  Score=80.28  Aligned_cols=32  Identities=31%  Similarity=0.631  Sum_probs=30.2

Q ss_pred             cCCCCcccCCccccccCCchhhhhhhhhcccC
Q 039095          400 QRGNKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       400 H~~~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |+|+|||+|++|+++|+++++|++|||+|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67999999999999999999999999999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.3e-14  Score=81.98  Aligned_cols=37  Identities=27%  Similarity=0.621  Sum_probs=29.9

Q ss_pred             CCCccccccccccccChhHHHhhhh-ccCccccccccccc
Q 039095           37 STQESQCKVCGKDFESLKALYGHMR-HHSRRERERIQCKE   75 (492)
Q Consensus        37 ~~~~~~C~~C~k~F~~~~~L~~H~r-~H~~~~~k~y~C~~   75 (492)
                      -++||+|.+|||.|...++|++||+ +|+++  |||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~e--kpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCC--CCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCC--cCcCCcC
Confidence            4678888888888888888888875 68888  8888864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-13  Score=77.01  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCcc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +|++++||+|.+|+++|...++|.+|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            466777777777777777777777777777664

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=9.4e-14  Score=74.12  Aligned_cols=28  Identities=36%  Similarity=0.704  Sum_probs=27.0

Q ss_pred             CCcccCCccccccCCchhhhhhhhhccc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      ||||+|++|+++|.++++|.+|||+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.33  E-value=2e-13  Score=73.91  Aligned_cols=29  Identities=28%  Similarity=0.644  Sum_probs=27.8

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |||.|++|+++|++++.|++||++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            79999999999999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.8e-13  Score=78.81  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=15.8

Q ss_pred             ccCCCCccccccccccccChhHHHhhhhccCc
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      +|+|++||+|.+|+++|...++|++|+++|++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            44445555555555555555555555544444

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-13  Score=72.20  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=27.7

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |||.|++||++|+++++|.+|+|+|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            79999999999999999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.3e-13  Score=78.34  Aligned_cols=33  Identities=21%  Similarity=0.482  Sum_probs=18.1

Q ss_pred             hhhccCcccccccccccchhhhcChhhHhhhhhhc
Q 039095           59 HMRHHSRRERERIQCKECGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        59 H~r~H~~~~~k~y~C~~C~k~F~~~~~L~~H~~~H   93 (492)
                      |.|+|+||  |||+|++|+++|+++++|++|+++|
T Consensus         2 h~R~HTge--KPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGI--KPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCS--SSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCc--cCeEeCCCCCEecCHHHHHHHHhcC
Confidence            44555555  5555555555555555555555555

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.28  E-value=4e-13  Score=72.72  Aligned_cols=29  Identities=24%  Similarity=0.635  Sum_probs=27.6

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +||.|++|||.|...+.|.+|+++|||||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=7.9e-13  Score=80.94  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             cCCCCcccCCc--cccccCCchhhhhhhhhcccCC
Q 039095          400 QRGNKEHTCRI--CLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       400 H~~~kpf~C~~--C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |+|+|||.|++  |+++|.++++|.+|+++|+|++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            66999999988  9999999999999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.6e-12  Score=73.55  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=17.3

Q ss_pred             cCCCCccccccccccccChhHHHhhhhccCc
Q 039095           35 SASTQESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        35 H~~~~~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      |+|++||+|.+|+|.|..+++|++|+++|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4555555555555555555555555555554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1e-12  Score=70.85  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=27.5

Q ss_pred             CceecccCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      |||.|++|||.|..++.|.+|+|+|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-12  Score=74.06  Aligned_cols=32  Identities=28%  Similarity=0.564  Sum_probs=29.2

Q ss_pred             eeccc--CccccccchhhhhhcccCCCCCCCCCC
Q 039095          344 IRCQA--CNKIFCSRRALGGHQRMHSAKRSSLPV  375 (492)
Q Consensus       344 ~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~  375 (492)
                      |.|++  ||+.|.++++|++|+++|+|+|||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            88987  999999999999999999987777775

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.8e-12  Score=69.08  Aligned_cols=27  Identities=26%  Similarity=0.651  Sum_probs=14.6

Q ss_pred             cccccccchhhhcChhhHhhhhhhccc
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      |||+|++|+++|+.+++|.+||++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            455555555555555555555555543

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=2.1e-12  Score=79.00  Aligned_cols=40  Identities=18%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             cchhhhhhccCCCCcccccc--ccccccChhHHHhhhhccCcc
Q 039095           26 SSFNHAASASASTQESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        26 ~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ..|.+|+. |++++||+|.+  |+|.|...++|.+|+++|+||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            45666664 77777777766  777777777777777777776

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.9e-12  Score=72.48  Aligned_cols=28  Identities=14%  Similarity=0.388  Sum_probs=14.3

Q ss_pred             ccCCCCccccccccccccChhHHHhhhh
Q 039095           34 ASASTQESQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        34 ~H~~~~~~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      +|+|++||+|++|++.|..+++|++|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            4555555555555555555555555543

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.2e-12  Score=67.89  Aligned_cols=28  Identities=32%  Similarity=0.592  Sum_probs=26.8

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |||.|++  |+++|+++++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            7999999  999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6e-12  Score=65.04  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=25.1

Q ss_pred             CcccCCccccccCCchhhhhhhhhcc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |||+|..|||+|.++++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999995

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.3e-12  Score=68.32  Aligned_cols=28  Identities=32%  Similarity=0.468  Sum_probs=26.7

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |||.|++  |+++|+++++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            7999988  999999999999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-11  Score=70.75  Aligned_cols=32  Identities=38%  Similarity=0.664  Sum_probs=26.4

Q ss_pred             ccccc--ccccccChhHHHhhhhccCcccccccccc
Q 039095           41 SQCKV--CGKDFESLKALYGHMRHHSRRERERIQCK   74 (492)
Q Consensus        41 ~~C~~--C~k~F~~~~~L~~H~r~H~~~~~k~y~C~   74 (492)
                      |.|+.  |+++|.++++|++|+++|+|+  |||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htge--kpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDT--RDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTS--CCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCC--CCEeCC
Confidence            67776  888888888888888888888  888886

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-11  Score=66.58  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=26.9

Q ss_pred             CcccCC--ccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCR--ICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~--~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      |||.|+  .|+++|++.++|++|+|+|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            799996  59999999999999999999974

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-11  Score=65.94  Aligned_cols=29  Identities=28%  Similarity=0.597  Sum_probs=26.6

Q ss_pred             Cceecc--cCccccccchhhhhhcccCCCCC
Q 039095          342 SEIRCQ--ACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       342 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +||.|+  .|||.|...++|.+|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689996  59999999999999999999875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-11  Score=63.69  Aligned_cols=26  Identities=35%  Similarity=0.731  Sum_probs=24.9

Q ss_pred             CceecccCccccccchhhhhhcccCC
Q 039095          342 SEIRCQACNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       342 ~~~~C~~C~k~F~~~~~L~~H~~~H~  367 (492)
                      |||+|++|||+|...+.|.+|+|+||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.5e-11  Score=64.06  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=19.7

Q ss_pred             Ccccccc--ccccccChhHHHhhhhccCcc
Q 039095           39 QESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        39 ~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +||+|++  |+|+|...++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677766  777777777777777777764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=6.4e-11  Score=63.44  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=25.8

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhccc
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~~  430 (492)
                      |||.|++  |+++|++.++|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            7999988  99999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.5e-11  Score=64.53  Aligned_cols=28  Identities=36%  Similarity=0.578  Sum_probs=18.5

Q ss_pred             Ccccccc--ccccccChhHHHhhhhccCcc
Q 039095           39 QESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        39 ~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +||+|++  |+|+|...++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4666655  666666666666666666664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.7e-10  Score=63.45  Aligned_cols=29  Identities=31%  Similarity=0.563  Sum_probs=27.1

Q ss_pred             CCcccCCc--cccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCRI--CLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~~--C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ||||.|++  |+++|++.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.8e-10  Score=60.83  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=24.8

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhcc
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~  429 (492)
                      |||.|++  |||+|++.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            7999998  9999999999999999995

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.7e-10  Score=54.34  Aligned_cols=26  Identities=42%  Similarity=0.782  Sum_probs=18.7

Q ss_pred             ccccccccccccChhHHHhhhhccCc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      |++|++|+|.|+++..|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45777777777777777777777764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.7e-10  Score=54.34  Aligned_cols=26  Identities=35%  Similarity=0.657  Sum_probs=24.8

Q ss_pred             cccCCccccccCCchhhhhhhhhccc
Q 039095          405 EHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      |++|++|++.|+++..|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=8.7e-10  Score=55.42  Aligned_cols=27  Identities=33%  Similarity=0.637  Sum_probs=25.8

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcc
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      +|||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999995

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3.3e-10  Score=60.62  Aligned_cols=27  Identities=26%  Similarity=0.623  Sum_probs=25.5

Q ss_pred             Cceeccc--CccccccchhhhhhcccCCC
Q 039095          342 SEIRCQA--CNKIFCSRRALGGHQRMHSA  368 (492)
Q Consensus       342 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  368 (492)
                      |||.|++  |||.|.+.++|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=1.6e-09  Score=59.46  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=13.3

Q ss_pred             Ccccccc--ccccccChhHHHhhhhccC
Q 039095           39 QESQCKV--CGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        39 ~~~~C~~--C~k~F~~~~~L~~H~r~H~   64 (492)
                      +||.|.+  |+|.|.+.++|++|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4555544  5555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.8e-10  Score=58.36  Aligned_cols=26  Identities=31%  Similarity=0.522  Sum_probs=24.7

Q ss_pred             Cceeccc--CccccccchhhhhhcccCC
Q 039095          342 SEIRCQA--CNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       342 ~~~~C~~--C~k~F~~~~~L~~H~~~H~  367 (492)
                      +||.|++  |||+|.+.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999996

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2e-09  Score=54.85  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=27.5

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      +|||.|++|+.+|+++..+..|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.2e-09  Score=51.51  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ++||+|.+|.++-...+.|..|+|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            58999999999999999999999999974

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=9e-09  Score=53.72  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=29.0

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCCCC
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSS  372 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~  372 (492)
                      .+...|++|||.|..-..|.+|.-+|+|||||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            35578999999999999999999999988877

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.2e-08  Score=49.68  Aligned_cols=25  Identities=24%  Similarity=0.616  Sum_probs=13.7

Q ss_pred             CccccccccccccChhHHHhhhhcc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H   63 (492)
                      +||.|++||+.|......++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555555555555555555555555

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-07  Score=49.54  Aligned_cols=30  Identities=30%  Similarity=0.574  Sum_probs=23.6

Q ss_pred             ccccccccccccChhHHHhhhhccCccccccc
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHSRRERERI   71 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~~~~~k~y   71 (492)
                      ...|+.|||.|....+|++|..+|++|  +||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~e--kpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGE--KPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSC--CCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCC--CCC
Confidence            346888888888888888888888888  777

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.7e-07  Score=46.51  Aligned_cols=27  Identities=22%  Similarity=0.473  Sum_probs=14.2

Q ss_pred             CccccccccccccChhHHHhhhhccCc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHSR   65 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~~   65 (492)
                      +||+|.+|.+.-...+.|..|+|.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.1e-07  Score=45.22  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=24.5

Q ss_pred             cCCccccccCCchhhhhhhhhcccCC
Q 039095          407 TCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       407 ~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      +|++|.+.|.++..|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999974

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.1e-07  Score=46.22  Aligned_cols=26  Identities=35%  Similarity=0.692  Sum_probs=24.5

Q ss_pred             ecccCccccccchhhhhhcccCCCCC
Q 039095          345 RCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       345 ~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      +|+.|.|+|.++..|+.|.|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.9e-07  Score=45.47  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=25.0

Q ss_pred             ceecccCccccccchhhhhhcccCCCC
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAK  369 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  369 (492)
                      .+.|..|||.|.-.+.|++|.-+|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999975

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.1e-07  Score=45.34  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=18.1

Q ss_pred             cccccccccccChhHHHhhhhccCcc
Q 039095           41 SQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +.|..|||.|...+.|++|..+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46777777777777777777777664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.9e-07  Score=46.72  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=25.9

Q ss_pred             ceecccCccccccchhhhhhcccCCCCC
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      .|.|++||.....++-|+.|+|+|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3899999999999999999999999764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.6e-07  Score=47.15  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhccc
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~~  430 (492)
                      |||.|.+  |+|+++..+.|..||+.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            7999998  99999999999999998765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.1e-07  Score=47.30  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=15.6

Q ss_pred             cccccccchhhhcChhhHhhhhhhccc
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHSQ   95 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~~   95 (492)
                      +||.|++|+..|..+..+.-|.++|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            555555555555555555555555543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.4e-07  Score=45.80  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             cccccccccccChhHHHhhhhccCcc
Q 039095           41 SQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      |.|+.|+.....++-|+.|+|+|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            77888888888888888888888876

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5.2e-07  Score=44.37  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=25.1

Q ss_pred             CcccCCccccccCCchhhhhhhhhcc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |||+|..|.++-...+.|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            89999999999999999999999996

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=6.2e-07  Score=49.68  Aligned_cols=30  Identities=37%  Similarity=0.723  Sum_probs=27.1

Q ss_pred             CCceecccCccccccchhhhhhcccCCCCC
Q 039095          341 ESEIRCQACNKIFCSRRALGGHQRMHSAKR  370 (492)
Q Consensus       341 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  370 (492)
                      .+.|.|.+|++.|.+.++|-.||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            467999999999999999999999998554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.6e-06  Score=47.99  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             CCCCcccCCccccccCCchhhhhhhh
Q 039095          401 RGNKEHTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       401 ~~~kpf~C~~C~k~F~~~~~L~~H~r  426 (492)
                      +|.|||.|.+|+|.|-++..+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47899999999999999999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.4e-06  Score=43.53  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             cccCCccccccCCchhhhhhhhh
Q 039095          405 EHTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      ||.|..|..+|.++++|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999985

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.7e-06  Score=44.04  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=11.2

Q ss_pred             cccccc--chhhhcChhhHhhhhhh
Q 039095           70 RIQCKE--CGKALLSAKSLSNHMRV   92 (492)
Q Consensus        70 ~y~C~~--C~k~F~~~~~L~~H~~~   92 (492)
                      ||.|.+  |+++|+..+.|+.|++.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            444444  44444444444444444

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.91  E-value=2.7e-06  Score=40.52  Aligned_cols=24  Identities=33%  Similarity=0.690  Sum_probs=22.9

Q ss_pred             ccCCccccccCCchhhhhhhhhcc
Q 039095          406 HTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |+|-+|.++|..++.|.+|.|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.87  E-value=2.5e-06  Score=43.84  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=23.9

Q ss_pred             cccCCccccccCCchhhhhhh-hhcccC
Q 039095          405 EHTCRICLKVFATGQALGGHK-RAHLVK  431 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~-r~H~~~  431 (492)
                      ||.|.+|++.|+++..|.+|. +.|.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            899999999999999999995 577653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.86  E-value=2.8e-06  Score=40.48  Aligned_cols=24  Identities=38%  Similarity=0.850  Sum_probs=23.0

Q ss_pred             eecccCccccccchhhhhhcccCC
Q 039095          344 IRCQACNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       344 ~~C~~C~k~F~~~~~L~~H~~~H~  367 (492)
                      |+|..|.++|.-++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=3.3e-06  Score=42.00  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             CCccccccccccccChhHHHhhhhccCcc
Q 039095           38 TQESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        38 ~~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ++.|.|..|..+|+.+-.|..||.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34566666666666666666666666654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.80  E-value=5.3e-06  Score=45.88  Aligned_cols=32  Identities=34%  Similarity=0.642  Sum_probs=28.3

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccCCCC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVKNLD  434 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~~~~  434 (492)
                      .+.|.|.+|++.|.+...|--||+.|..+...
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~~   34 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDRAR   34 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchHHH
Confidence            47799999999999999999999999766543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.4e-06  Score=42.66  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             ccccccchhhhcChhhHhhhhhh
Q 039095           70 RIQCKECGKALLSAKSLSNHMRV   92 (492)
Q Consensus        70 ~y~C~~C~k~F~~~~~L~~H~~~   92 (492)
                      ||.|..|..+|.++++|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68899999999999999999985

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5.1e-06  Score=40.79  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=14.9

Q ss_pred             CccccccccccccChhHHHhhhhccC
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~   64 (492)
                      +||+|..|.+.-...++|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45555555555555555555555553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=6.2e-06  Score=41.01  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=26.9

Q ss_pred             CCcccCCccccccCCchhhhhhhhhcccC
Q 039095          403 NKEHTCRICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      +..|.|.+|...|+++-.|..||-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            46799999999999999999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=6.6e-06  Score=42.23  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=24.8

Q ss_pred             CcccCCc--cccccCCchhhhhhh-hhccc
Q 039095          404 KEHTCRI--CLKVFATGQALGGHK-RAHLV  430 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~-r~H~~  430 (492)
                      |||.|.+  |.|+|++.+....|. |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6999998  999999999999996 89974

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=3.4e-06  Score=41.97  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=15.8

Q ss_pred             ccccccc--chhhhcChhhHhhhhhhc
Q 039095           69 ERIQCKE--CGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        69 k~y~C~~--C~k~F~~~~~L~~H~~~H   93 (492)
                      .||+|+.  |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3666665  666666666666666655

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.1e-05  Score=40.49  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.7

Q ss_pred             CcccCCccccccCCchhhhhhhhhcc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |||.|.+|.++-...++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            69999999999999999999998644

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.69  E-value=6.1e-06  Score=41.03  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhc
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAH  428 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H  428 (492)
                      .||+|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899974  999999999999999988

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.66  E-value=5.2e-06  Score=41.46  Aligned_cols=28  Identities=36%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             Ccccccc--ccccccChhHHHhhhhccCcc
Q 039095           39 QESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        39 ~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +||.|..  |.|.|.+-.+|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4777765  888888888888888888764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=7.4e-06  Score=41.06  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=18.0

Q ss_pred             cccccccchhhhcChhhHhhhhhhcc
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      +||+|.+|...-...++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            46777777777777777777776543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.3e-05  Score=41.13  Aligned_cols=28  Identities=32%  Similarity=0.600  Sum_probs=25.1

Q ss_pred             Cceeccc--Cccccccchhhhhhc-ccCCCC
Q 039095          342 SEIRCQA--CNKIFCSRRALGGHQ-RMHSAK  369 (492)
Q Consensus       342 ~~~~C~~--C~k~F~~~~~L~~H~-~~H~~~  369 (492)
                      +||.|.+  |.|.|+..+.-..|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6899988  999999999999997 999843

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.54  E-value=1.5e-05  Score=39.81  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             CcccCCc--cccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCRI--CLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~~--C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |||.|..  |.|.|.+...|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            6899975  999999999999999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.3e-05  Score=42.82  Aligned_cols=28  Identities=29%  Similarity=0.447  Sum_probs=25.8

Q ss_pred             CCCcccC--CccccccCCchhhhhhhhhcc
Q 039095          402 GNKEHTC--RICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       402 ~~kpf~C--~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      ++|||.|  +-|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            6899999  569999999999999999996

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.2e-05  Score=39.25  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=24.1

Q ss_pred             CcccCCccccccCCchhhhhhhhhccc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      +||+|.+|..--++.++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            699999999999999999999986554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.1e-05  Score=43.47  Aligned_cols=26  Identities=19%  Similarity=0.471  Sum_probs=22.3

Q ss_pred             CcccccccccccchhhhcChhhHhhhhh
Q 039095           64 SRRERERIQCKECGKALLSAKSLSNHMR   91 (492)
Q Consensus        64 ~~~~~k~y~C~~C~k~F~~~~~L~~H~~   91 (492)
                      +|.  |||.|.+|++.|..+..+.+|..
T Consensus         1 TGi--KPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGI--KPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCC--CCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCC--CceeccchhhhhhhHHHHHHhhh
Confidence            355  89999999999999999998865

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.25  E-value=6.1e-05  Score=38.61  Aligned_cols=20  Identities=25%  Similarity=0.600  Sum_probs=10.7

Q ss_pred             ccccccccccccChhHHHhh
Q 039095           40 ESQCKVCGKDFESLKALYGH   59 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H   59 (492)
                      ||.|.+|++.|..+.-|.+|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH   20 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRH   20 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHH
Confidence            45555555555555555555

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00011  Score=34.95  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             cccCCccccccCCchhhhhhhh
Q 039095          405 EHTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r  426 (492)
                      ||+|.-|...|-++..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999964

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0001  Score=36.84  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=11.1

Q ss_pred             ccccccccccccChhHHHhhhh
Q 039095           40 ESQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      ||+|.+|...-+.+++|..|++
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHH
Confidence            4555555555555555555544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00039  Score=34.12  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=23.2

Q ss_pred             cccCCccccccCCchhhhhhhhhcc
Q 039095          405 EHTCRICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |-+|+.|.++..++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999985

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00057  Score=33.55  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=17.3

Q ss_pred             ccccccccccccChhHHHhhhhccC
Q 039095           40 ESQCKVCGKDFESLKALYGHMRHHS   64 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r~H~   64 (492)
                      |-+|+.|+++.+++..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4467777777777777777777764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.46  E-value=0.00053  Score=32.65  Aligned_cols=22  Identities=23%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             ccCCccccccCCchhhhhhhhh
Q 039095          406 HTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       406 f~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      |.|++|-+.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8899999999999999999874

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.00074  Score=31.99  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=13.4

Q ss_pred             ccccccccccccChhHHHhhh
Q 039095           40 ESQCKVCGKDFESLKALYGHM   60 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~   60 (492)
                      ||+|.-|...|-.+.+|+.||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            566666666666666666665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.26  E-value=0.00053  Score=32.65  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=17.1

Q ss_pred             cccccchhhhcChhhHhhhhhh
Q 039095           71 IQCKECGKALLSAKSLSNHMRV   92 (492)
Q Consensus        71 y~C~~C~k~F~~~~~L~~H~~~   92 (492)
                      |.|++|-+.|+.+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888877764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.00096  Score=32.46  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             cccCCccccccCCchhhhhhhh
Q 039095          405 EHTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r  426 (492)
                      ||+|.-|||.+.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999964

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0008  Score=36.62  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=13.4

Q ss_pred             CCcccc--ccccccccChhHHHhhhhcc
Q 039095           38 TQESQC--KVCGKDFESLKALYGHMRHH   63 (492)
Q Consensus        38 ~~~~~C--~~C~k~F~~~~~L~~H~r~H   63 (492)
                      ++||.|  +-|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            455555  33555555555555555444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0011  Score=32.32  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=12.5

Q ss_pred             ccccccccccccChhHHHhhh
Q 039095           40 ESQCKVCGKDFESLKALYGHM   60 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~   60 (492)
                      ||+|..|||.+-.+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            456666666666666666553

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.001  Score=38.08  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=22.5

Q ss_pred             cccccccchhhhcChhhHhhhhhhcc
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~   94 (492)
                      -.|.|.+|||.|+....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            46899999999999999999988773

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0023  Score=31.24  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=21.1

Q ss_pred             cccCCccccccCCchhhhhhhhh
Q 039095          405 EHTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      .|.|+.|+....+++.|..|+|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            38999999999999999999984

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0018  Score=33.87  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=23.1

Q ss_pred             ceecccCccccccchhhhhhcccCCC
Q 039095          343 EIRCQACNKIFCSRRALGGHQRMHSA  368 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~~~H~~  368 (492)
                      .|.|..|||+|..+..+.+|-..-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            59999999999999999999876664

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0017  Score=34.62  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=16.4

Q ss_pred             cccccChhHHHhhhhccCcc
Q 039095           47 GKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        47 ~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ++.|+.+..|..|||+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45688888889999888875

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0055  Score=31.94  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             CcccCCccccccCCchhhhhhhhhcccCC
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLVKN  432 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~~~  432 (492)
                      -.|.|.-|||.|+++..+.+|...-+|-.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCCC
Confidence            35999999999999999999988877643

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0027  Score=33.77  Aligned_cols=20  Identities=30%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             ccccCCchhhhhhhhhcccC
Q 039095          412 LKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       412 ~k~F~~~~~L~~H~r~H~~~  431 (492)
                      ++.|..++.|..|||+|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            56799999999999999985

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.003  Score=36.11  Aligned_cols=27  Identities=33%  Similarity=0.532  Sum_probs=24.7

Q ss_pred             CcccCCccccccCCchhhhhhhhhccc
Q 039095          404 KEHTCRICLKVFATGQALGGHKRAHLV  430 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H~r~H~~  430 (492)
                      --|.|-+|+|.|+....|+.|..-|.-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            458999999999999999999999975

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0067  Score=29.56  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=14.6

Q ss_pred             cccccccccccChhHHHhhhhc
Q 039095           41 SQCKVCGKDFESLKALYGHMRH   62 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r~   62 (492)
                      |+|+.|+-....+++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5666666666666666666653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.57  E-value=0.0054  Score=31.01  Aligned_cols=28  Identities=21%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             Ccccccc--ccccccChhHHHhhhhccCcc
Q 039095           39 QESQCKV--CGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        39 ~~~~C~~--C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      +.|.|.+  |+..|+....|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            3567754  888888888888888777765

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.48  E-value=0.0062  Score=29.43  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             ccCC--ccccccCCchhhhhhhhhcc
Q 039095          406 HTCR--ICLKVFATGQALGGHKRAHL  429 (492)
Q Consensus       406 f~C~--~C~k~F~~~~~L~~H~r~H~  429 (492)
                      |.|.  -|+++|+.-..|+.|.-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            5675  49999999999999998885

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.32  E-value=0.0048  Score=29.84  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=11.8

Q ss_pred             chhhhcChhhHhhhhhhcc
Q 039095           76 CGKALLSAKSLSNHMRVHS   94 (492)
Q Consensus        76 C~k~F~~~~~L~~H~~~H~   94 (492)
                      |+++|..-.+|+.|+-+|+
T Consensus         9 c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             CCCEESSHHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeeccc
Confidence            6666666666666665553

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.013  Score=36.77  Aligned_cols=39  Identities=10%  Similarity=0.152  Sum_probs=25.2

Q ss_pred             CCCCccccCCCCcccccccchhhhhhccCCCCcccccccccc
Q 039095            8 DGHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGKD   49 (492)
Q Consensus         8 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~   49 (492)
                      .....|.|+.|+++|.....++.   .-.....|.|.+|+-.
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            44566888888888776544433   3344556888888754

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.83  E-value=0.014  Score=30.11  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=18.7

Q ss_pred             ccccccccccccChhHHHhhhh
Q 039095           40 ESQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      .|.|.-||.+|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4889999999999999988864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.75  E-value=0.013  Score=29.61  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=24.7

Q ss_pred             CcccCC--ccccccCCchhhhhhhhhcccC
Q 039095          404 KEHTCR--ICLKVFATGQALGGHKRAHLVK  431 (492)
Q Consensus       404 kpf~C~--~C~k~F~~~~~L~~H~r~H~~~  431 (492)
                      |.|.|.  .|+..|...-.|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568886  5999999999999999999985

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.69  E-value=0.015  Score=29.98  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             CCcccCCccccccCCchhhhhhhh
Q 039095          403 NKEHTCRICLKVFATGQALGGHKR  426 (492)
Q Consensus       403 ~kpf~C~~C~k~F~~~~~L~~H~r  426 (492)
                      .-.|.|.-||.+|.+.+.|..|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345999999999999999999975

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.012  Score=28.81  Aligned_cols=18  Identities=22%  Similarity=0.610  Sum_probs=13.2

Q ss_pred             chhhhcChhhHhhhhhhc
Q 039095           76 CGKALLSAKSLSNHMRVH   93 (492)
Q Consensus        76 C~k~F~~~~~L~~H~~~H   93 (492)
                      |++.|...+.++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            777777777777777666

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.011  Score=29.02  Aligned_cols=19  Identities=32%  Similarity=0.651  Sum_probs=17.8

Q ss_pred             cCccccccchhhhhhcccC
Q 039095          348 ACNKIFCSRRALGGHQRMH  366 (492)
Q Consensus       348 ~C~k~F~~~~~L~~H~~~H  366 (492)
                      -|+|.|...++++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4999999999999999887

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.019  Score=36.62  Aligned_cols=21  Identities=29%  Similarity=0.608  Sum_probs=10.3

Q ss_pred             cccccccccccChhHHHhhhh
Q 039095           41 SQCKVCGKDFESLKALYGHMR   61 (492)
Q Consensus        41 ~~C~~C~k~F~~~~~L~~H~r   61 (492)
                      |.|..|+|.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            445555555555555544443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.71  E-value=0.055  Score=30.63  Aligned_cols=27  Identities=26%  Similarity=0.505  Sum_probs=24.4

Q ss_pred             CCCcccCCccccccCCchhhhhhhhhc
Q 039095          402 GNKEHTCRICLKVFATGQALGGHKRAH  428 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~~~L~~H~r~H  428 (492)
                      .+.|-.|++|+....+..+|.+|+..-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999998743

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.23  E-value=0.048  Score=28.46  Aligned_cols=28  Identities=21%  Similarity=0.559  Sum_probs=24.0

Q ss_pred             CCCcccCCccccccCCchhhhhhh-hhcc
Q 039095          402 GNKEHTCRICLKVFATGQALGGHK-RAHL  429 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~~~L~~H~-r~H~  429 (492)
                      |+-.|.|.+|.+.++.-+++-+|. ..|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            567899999999999999999995 4554

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=90.87  E-value=0.052  Score=29.65  Aligned_cols=27  Identities=7%  Similarity=-0.021  Sum_probs=16.9

Q ss_pred             CCCccccCCCCcccccccchhhhhhccCCCCccccccccc
Q 039095            9 GHISYDLRENPKKSWKFSSFNHAASASASTQESQCKVCGK   48 (492)
Q Consensus         9 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k   48 (492)
                      .++-|.|.+||.++             .++-|-+|++|+.
T Consensus         2 ~~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYIH-------------KGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCEE-------------ESSCCSBCTTTCC
T ss_pred             CCCEEECCCCCCEe-------------eCCCCCcCCCCCC
Confidence            45567777777653             3344556777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.03  Score=35.75  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=22.7

Q ss_pred             CCCcccCCccccccCCchhhhhhhhh
Q 039095          402 GNKEHTCRICLKVFATGQALGGHKRA  427 (492)
Q Consensus       402 ~~kpf~C~~C~k~F~~~~~L~~H~r~  427 (492)
                      |.-.|-|..|+|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34559999999999999999999873

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.052  Score=26.69  Aligned_cols=18  Identities=33%  Similarity=0.541  Sum_probs=16.4

Q ss_pred             ccccccCCchhhhhhhhh
Q 039095          410 ICLKVFATGQALGGHKRA  427 (492)
Q Consensus       410 ~C~k~F~~~~~L~~H~r~  427 (492)
                      -||+.|+++..|+-|++-
T Consensus         7 gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTCCEESSHHHHHHHHHH
T ss_pred             CchhhhccHHHHHhHHHH
Confidence            599999999999999873

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.045  Score=34.19  Aligned_cols=36  Identities=8%  Similarity=0.105  Sum_probs=22.4

Q ss_pred             cccccccchhhhcChhhHhhhhhhcccCcccccccCch
Q 039095           69 ERIQCKECGKALLSAKSLSNHMRVHSQKLRACNESGAV  106 (492)
Q Consensus        69 k~y~C~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~~~  106 (492)
                      ..|.||.|+++|+....++.  -......|.|..|+..
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~L--~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQL--FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHHH--EETTTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcchhhHHHh--cCcCCCeEEecCCCCE
Confidence            46778888877776655442  2233355778777743

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.044  Score=27.06  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             ceecccCccccccchhhhhhc-ccCC
Q 039095          343 EIRCQACNKIFCSRRALGGHQ-RMHS  367 (492)
Q Consensus       343 ~~~C~~C~k~F~~~~~L~~H~-~~H~  367 (492)
                      .|+|..|||...+...++.|+ .-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            489999999999999999995 4554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.093  Score=25.87  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             cccCCccccccCCchhhhhhh-hhcc
Q 039095          405 EHTCRICLKVFATGQALGGHK-RAHL  429 (492)
Q Consensus       405 pf~C~~C~k~F~~~~~L~~H~-r~H~  429 (492)
                      -|.|..|||..++...++.|+ .-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            489999999999999999994 4554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.79  E-value=0.055  Score=28.23  Aligned_cols=20  Identities=25%  Similarity=0.720  Sum_probs=9.1

Q ss_pred             ccccccccccccChhHHHhh
Q 039095           40 ESQCKVCGKDFESLKALYGH   59 (492)
Q Consensus        40 ~~~C~~C~k~F~~~~~L~~H   59 (492)
                      .|+|.+|.+++..-+++-+|
T Consensus         8 ~yRC~~C~r~YTHISNFCRH   27 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRH   27 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHH
Confidence            34444444444444444444

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.70  E-value=0.082  Score=29.90  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=24.3

Q ss_pred             CCCCceecccCccccccchhhhhhccc
Q 039095          339 QKESEIRCQACNKIFCSRRALGGHQRM  365 (492)
Q Consensus       339 ~~~~~~~C~~C~k~F~~~~~L~~H~~~  365 (492)
                      ..+.|-.|++|+.......+|++|+..
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            467789999999999999999999864

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.24  E-value=0.1  Score=25.70  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             CcccCC--ccccccCCchhhhhhhh-hc
Q 039095          404 KEHTCR--ICLKVFATGQALGGHKR-AH  428 (492)
Q Consensus       404 kpf~C~--~C~k~F~~~~~L~~H~r-~H  428 (492)
                      |.|+|+  -|+-.|+++.+++.|.- -|
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhc
Confidence            457886  59999999999999964 44

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.56  E-value=0.056  Score=29.79  Aligned_cols=12  Identities=17%  Similarity=0.528  Sum_probs=8.7

Q ss_pred             CCCcccCCcccc
Q 039095          402 GNKEHTCRICLK  413 (492)
Q Consensus       402 ~~kpf~C~~C~k  413 (492)
                      |+-|-.|++|+.
T Consensus        17 g~~P~~CPvCg~   28 (37)
T d1nnqa2          17 DEAPEYCPVCGA   28 (37)
T ss_dssp             SCCCSBCTTTCC
T ss_pred             CCCCCcCCCCCC
Confidence            566778888864

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=82.36  E-value=0.29  Score=28.12  Aligned_cols=12  Identities=8%  Similarity=-0.260  Sum_probs=7.4

Q ss_pred             ccccCCCCcccc
Q 039095           12 SYDLRENPKKSW   23 (492)
Q Consensus        12 ~~~C~~C~k~f~   23 (492)
                      .|+|.+|+.+|.
T Consensus         3 ~y~C~~CgyiYd   14 (45)
T d6rxna_           3 KYVCNVCGYEYD   14 (45)
T ss_dssp             CEEETTTCCEEC
T ss_pred             CeEeCCCCeEEC
Confidence            466666666654

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=81.31  E-value=0.24  Score=37.18  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=21.3

Q ss_pred             eecccCccccccchhhhhhcccCC
Q 039095          344 IRCQACNKIFCSRRALGGHQRMHS  367 (492)
Q Consensus       344 ~~C~~C~k~F~~~~~L~~H~~~H~  367 (492)
                      |+|..||| +..-.+|.+||+.|-
T Consensus       147 YKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         147 YKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             eehhhcCc-eecHHHHHHHHHHcC
Confidence            89999999 888999999999994

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.63  Score=24.36  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=24.5

Q ss_pred             CcccCCccccccCCchhhhhh-hhhcccCCCC
Q 039095          404 KEHTCRICLKVFATGQALGGH-KRAHLVKNLD  434 (492)
Q Consensus       404 kpf~C~~C~k~F~~~~~L~~H-~r~H~~~~~~  434 (492)
                      |...|-.|.+.|++.-...+| ..+|....-.
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnqn~m~   33 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQNNMA   33 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheeccccccC
Confidence            346799999999999999999 4577655443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.33  Score=29.62  Aligned_cols=28  Identities=29%  Similarity=0.561  Sum_probs=16.1

Q ss_pred             CccccccccccccChhHHHhhhhccCcc
Q 039095           39 QESQCKVCGKDFESLKALYGHMRHHSRR   66 (492)
Q Consensus        39 ~~~~C~~C~k~F~~~~~L~~H~r~H~~~   66 (492)
                      ..|+|..|.-.|-+-..|..|+..|..+
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            3456666666666666666666555543