Citrus Sinensis ID: 039106

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MLLKLFLLALLLERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLPSHSL
cHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccccHHHHccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccEEEEccccccccccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEEccEEEEEccEEEEEEEEEEEccEEEEEccEEEEEcccEEEEEEccccccccccEEEEEccEEEEccccEEccccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccccccccccccccc
cHHHHHHHHHHHHcccHHHccccccccHHHHccccccccccccccHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEccccccccccccccccEcEEEEEEEcccEEEEEEEEEccccccccccccccEEEEEEccccEEEEEcEEEEEEEEEEccHEEEEEcccEEEccccccEEEEccccccccccEEEEEEEEHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHcccccccccccccHHHHHcccHHHHcccccccccccc
MLLKLFLLALLLERtsswvasdesndlaVVEQGDLNWVNFKQHALHLNHSLFQKaknkfkpcktikvnknprlgnfVTVQKAInslpvinlCRVVIFISagtyrekveiptTMAYITMIGagadntviewddtadrmgqsgrplgtyasatfavnspyfiaknitfknkaplppsgalgkQAVAFRIsadtaaftgckfigsvdfifgnglsfyedCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTymdkiitprgwydwgdknremtvfygqykcsgpgayyggrvswsreltqeeaepfisvefidghqwlpshsl
MLLKLFLLALLLERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKvnknprlgnFVTVQKainslpvinlCRVVIFISagtyrekveiPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDkiitprgwydwgdKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFIsvefidghqwlpshsl
MllklfllalllERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLPSHSL
**LKLFLLALLLERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWL*****
**LKLFLLALLLER***********************V***Q****************FKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLPS***
MLLKLFLLALLLERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLPSHSL
MLLKLFLLALLLERTSSWVASD*SNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLKLFLLALLLERTSSWVASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWLPSHSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q8VYZ3383 Probable pectinesterase 5 yes no 0.878 0.791 0.596 1e-112
Q8LPF3362 Probable pectinesterase 6 no no 0.802 0.765 0.463 4e-70
Q9ZQA3407 Probable pectinesterase 1 no no 0.756 0.641 0.450 6e-66
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.8 0.726 0.445 8e-63
O23038393 Probable pectinesterase 8 no no 0.753 0.661 0.423 1e-59
Q9SIJ9352 Putative pectinesterase 1 no no 0.759 0.744 0.406 3e-58
Q9ZQA4333 Putative pectinesterase 1 no no 0.779 0.807 0.401 1e-57
Q9LVQ0317 Pectinesterase 31 OS=Arab no no 0.785 0.854 0.407 4e-57
Q9LY19361 Probable pectinesterase 4 no no 0.773 0.739 0.395 4e-54
Q84WM7361 Pectinesterase PPME1 OS=A no no 0.773 0.739 0.391 7e-54
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function desciption
 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 236/327 (72%), Gaps = 24/327 (7%)

Query: 35  LNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRV 94
           + WV F      L HS+F+ AKNK  P  T+ V+K    G+F  +Q AI+SLP+IN  RV
Sbjct: 58  MKWVRF---VGSLKHSVFKAAKNKLFPSYTLTVHKKSNKGDFTKIQDAIDSLPLINFVRV 114

Query: 95  VIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAV 154
           VI + AG Y+EKV IP   A+IT+ G GA+ T +EW DTA      G P+GTY SA+FAV
Sbjct: 115 VIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAV 174

Query: 155 NSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFIG------------- 201
           NSP+F+AKNITF+N  P+P  GA+GKQAVA R+SAD AAF GC+ +G             
Sbjct: 175 NSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHY 234

Query: 202 --------SVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGS 253
                   SVDFIFGN LS YE CH+HAI +  GA+TAQ R S+LE+TGFSFVKCKVTG+
Sbjct: 235 YKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFVKCKVTGT 294

Query: 254 GALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGR 313
           G LYLGRAWG FSRVVFAYTYMD II PRGWY+WGD +REMTVFYGQYKC+G GA YGGR
Sbjct: 295 GVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGR 354

Query: 314 VSWSRELTQEEAEPFISVEFIDGHQWL 340
           V+W+RELT EEA+PF+S+ FIDG +W+
Sbjct: 355 VAWARELTDEEAKPFLSLTFIDGSEWI 381
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function description
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
255581396367 Pectinesterase-2 precursor, putative [Ri 0.939 0.882 0.724 1e-144
224097126339 predicted protein [Populus trichocarpa] 0.884 0.899 0.755 1e-142
297735047364 unnamed protein product [Vitis vinifera] 0.976 0.925 0.684 1e-136
359476846362 PREDICTED: probable pectinesterase 53-li 0.976 0.930 0.684 1e-136
449457504377 PREDICTED: probable pectinesterase 53-li 0.985 0.901 0.637 1e-134
449530939345 PREDICTED: probable pectinesterase 53-li 0.907 0.907 0.670 1e-132
224122600381 predicted protein [Populus trichocarpa] 0.889 0.805 0.643 1e-120
255546301383 Pectinesterase PPE8B precursor, putative 0.901 0.812 0.632 1e-120
449489800387 PREDICTED: probable pectinesterase 53-li 0.953 0.850 0.617 1e-119
449436052393 PREDICTED: probable pectinesterase 53-li 0.953 0.837 0.617 1e-119
>gi|255581396|ref|XP_002531506.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223528859|gb|EEF30860.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/348 (72%), Positives = 280/348 (80%), Gaps = 24/348 (6%)

Query: 16  SSWVASD--ESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRL 73
           +SW  S+   SN   V E+  L W+  KQ      H+LFQKAKNKFKPC TIKVNK  + 
Sbjct: 18  TSWFTSNGSNSNRFVVNEEAYLQWLKAKQMG-SFKHALFQKAKNKFKPCLTIKVNKKSKS 76

Query: 74  GNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDT 133
           G+FVT++KA+NS+PVIN CRV+I I AGTYREK+EIP +M+YIT+ GAGA  T IEWDDT
Sbjct: 77  GDFVTLKKALNSIPVINNCRVIISIGAGTYREKIEIPGSMSYITLEGAGAGKTTIEWDDT 136

Query: 134 ADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAA 193
           AD+ GQ G  LGTY SATFA+NSPYFIAKNITFKNKAP PPSGALGKQAVA RISADTAA
Sbjct: 137 ADKQGQGGHLLGTYGSATFAINSPYFIAKNITFKNKAPSPPSGALGKQAVALRISADTAA 196

Query: 194 FTGCKFIG---------------------SVDFIFGNGLSFYEDCHLHAITNSYGALTAQ 232
           F GCKFIG                     SVDFIFGNGLS Y+DCHLHAITNS+GALTAQ
Sbjct: 197 FIGCKFIGAQDTLYDHIGRHYFKECYIEGSVDFIFGNGLSLYDDCHLHAITNSFGALTAQ 256

Query: 233 KRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNR 292
           KR S+LEETGFSFV CKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITP GWYDWGDKNR
Sbjct: 257 KRESMLEETGFSFVNCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPTGWYDWGDKNR 316

Query: 293 EMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDGHQWL 340
           EMTVFYGQYKCSGPGA +GGRVSWSRELT++EA+PF+S++FIDG  WL
Sbjct: 317 EMTVFYGQYKCSGPGAQFGGRVSWSRELTEQEAKPFVSIDFIDGQDWL 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097126|ref|XP_002310842.1| predicted protein [Populus trichocarpa] gi|222853745|gb|EEE91292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297735047|emb|CBI17409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476846|ref|XP_003631899.1| PREDICTED: probable pectinesterase 53-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449457504|ref|XP_004146488.1| PREDICTED: probable pectinesterase 53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530939|ref|XP_004172449.1| PREDICTED: probable pectinesterase 53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224122600|ref|XP_002330522.1| predicted protein [Populus trichocarpa] gi|222872456|gb|EEF09587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546301|ref|XP_002514210.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] gi|223546666|gb|EEF48164.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449489800|ref|XP_004158420.1| PREDICTED: probable pectinesterase 53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436052|ref|XP_004135808.1| PREDICTED: probable pectinesterase 53-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.426 0.383 0.727 3e-110
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.426 0.406 0.5 1.2e-71
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.426 0.361 0.526 1.6e-67
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.426 0.374 0.445 2e-61
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.426 0.441 0.489 1.8e-60
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.794 0.778 0.4 9.2e-52
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.771 0.736 0.387 2.5e-49
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.802 0.805 0.366 1.6e-47
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.779 0.745 0.366 1.1e-46
TAIR|locus:2065145336 AT2G47280 [Arabidopsis thalian 0.417 0.428 0.393 9.6e-44
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 611 (220.1 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 107/147 (72%), Positives = 124/147 (84%)

Query:   194 FTGCKFIGSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGS 253
             +  C   GSVDFIFGN LS YE CH+HAI +  GA+TAQ R S+LE+TGFSFVKCKVTG+
Sbjct:   235 YKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFVKCKVTGT 294

Query:   254 GALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGR 313
             G LYLGRAWG FSRVVFAYTYMD II PRGWY+WGD +REMTVFYGQYKC+G GA YGGR
Sbjct:   295 GVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGR 354

Query:   314 VSWSRELTQEEAEPFISVEFIDGHQWL 340
             V+W+RELT EEA+PF+S+ FIDG +W+
Sbjct:   355 VAWARELTDEEAKPFLSLTFIDGSEWI 381
GO:0005618 "cell wall" evidence=IEA;IDA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009411 "response to UV" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065145 AT2G47280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYZ3PME53_ARATH3, ., 1, ., 1, ., 1, 10.59630.87820.7911yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VII0457
pectinesterase family protein (EC-3.1.1.11) (340 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.930
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.927
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.926
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.926
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.925
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.922
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.922
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.920
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.920
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.919

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 0.0
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-101
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 3e-96
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-96
PLN02671359 PLN02671, PLN02671, pectinesterase 4e-96
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-91
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-88
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 8e-79
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 3e-71
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-61
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-56
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-50
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 8e-49
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-48
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 2e-48
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 5e-48
PLN02314586 PLN02314, PLN02314, pectinesterase 5e-48
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-47
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-47
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 9e-46
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 2e-45
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 3e-45
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-44
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 2e-43
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 3e-41
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 9e-41
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 4e-40
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 8e-40
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 6e-39
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-35
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-34
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-33
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-25
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-11
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information 
 Score =  598 bits (1544), Expect = 0.0
 Identities = 240/365 (65%), Positives = 268/365 (73%), Gaps = 27/365 (7%)

Query: 1   MLLKLFLLALLLERTSSWVAS---DESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKN 57
            L  L LL  LL  + +       D S  +   E+  + WV F      L HS+FQKAKN
Sbjct: 7   FLACLLLLVFLLPSSQTGCQPLAPDNSTRVQAPEEQFMKWVRFMGS---LKHSVFQKAKN 63

Query: 58  KFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYIT 117
           K  P  TI V+K P  G+F T+Q AI+SLPVINL RVVI ++AGTYREKV IP   AYIT
Sbjct: 64  KLFPSYTIVVDKKPAAGDFTTIQAAIDSLPVINLVRVVIKVNAGTYREKVNIPPLKAYIT 123

Query: 118 MIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGA 177
           + GAGAD T+I+W DTAD  G  GRPLGTY SATFAVNSPYFIAKNITFKN AP+PP GA
Sbjct: 124 LEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVNSPYFIAKNITFKNTAPVPPPGA 183

Query: 178 LGKQAVAFRISADTAAFTGCKFI---------------------GSVDFIFGNGLSFYED 216
           LGKQAVA RISADTAAF GCKF+                     GSVDFIFGNGLS YE 
Sbjct: 184 LGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFIFGNGLSLYEG 243

Query: 217 CHLHAITNSYGALTAQKRGSLLEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMD 276
           CHLHAI  ++GALTAQKR S+LE+TGFSFV CKVTGSGALYLGRAWGTFSRVVFAYTYMD
Sbjct: 244 CHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSGALYLGRAWGTFSRVVFAYTYMD 303

Query: 277 KIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSRELTQEEAEPFISVEFIDG 336
            II PRGWY+WGD NREMTVFYGQYKC+GPGA + GRV+WSRELT EEA+PFIS+ FIDG
Sbjct: 304 NIIIPRGWYNWGDPNREMTVFYGQYKCTGPGANFAGRVAWSRELTDEEAKPFISLSFIDG 363

Query: 337 HQWLP 341
            +WL 
Sbjct: 364 SEWLK 368

Length = 369
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PLN02682369 pectinesterase family protein 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02497331 probable pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02304379 probable pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.26
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.62
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.55
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.89
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.79
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.19
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.35
PLN02188404 polygalacturonase/glycoside hydrolase family prote 95.34
PLN02793443 Probable polygalacturonase 95.01
smart00656190 Amb_all Amb_all domain. 94.07
PLN03010409 polygalacturonase 93.73
KOG1777 625 consensus Putative Zn-finger protein [General func 93.06
PLN02682369 pectinesterase family protein 92.98
PLN02218431 polygalacturonase ADPG 91.97
PLN02432293 putative pectinesterase 90.2
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 89.86
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 89.84
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.27
PLN02155394 polygalacturonase 87.93
PLN03003456 Probable polygalacturonase At3g15720 87.06
PLN02497331 probable pectinesterase 86.83
PLN02480343 Probable pectinesterase 86.3
PLN02634359 probable pectinesterase 85.8
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 85.55
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 83.32
PLN02304379 probable pectinesterase 82.04
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 81.04
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 80.83
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 80.72
>PLN02682 pectinesterase family protein Back     alignment and domain information 
Probab=100.00  E-value=5.9e-96  Score=715.46  Aligned_cols=320  Identities=73%  Similarity=1.229  Sum_probs=297.3

Q ss_pred             eecCCCccccccccCcccccccccccccccchhhhhhhccCCCCceEEEcCCCCCCCCccHHHHHHhCCCCCcceEEEEE
Q 039106           19 VASDESNDLAVVEQGDLNWVNFKQHALHLNHSLFQKAKNKFKPCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFI   98 (345)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ivV~~d~G~g~f~TIq~AI~aap~~~~~r~~I~I   98 (345)
                      ..-+.+++++.++++||+||+.+   ...+|+.++.+.++..|..+++|++++|+|||+|||+|||++|.++++|++|+|
T Consensus        28 ~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~p~~~i~V~~~~gsGdf~TIQ~AIdavP~~~~~r~vI~I  104 (369)
T PLN02682         28 LAPDNSTRVQAPEEQFMKWVRFM---GSLKHSVFQKAKNKLFPSYTIVVDKKPAAGDFTTIQAAIDSLPVINLVRVVIKV  104 (369)
T ss_pred             CCcccchhhhhhhHHHHHHHHHh---cccccchhhcccccCCCCeEEEEeCCCCCCCccCHHHHHhhccccCCceEEEEE
Confidence            34567778888999999999876   445677776666666778899999943899999999999999999889999999


Q ss_pred             eCceeeeeEeecccCceEEEEecCCCceEEecCCCcccCCCCCCCCCCcccceeeeecCceEEEeeeeecCCCCCCCCCC
Q 039106           99 SAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGAL  178 (345)
Q Consensus        99 ~~G~Y~E~v~I~~~k~~ItL~G~g~~~tiI~~~~~~~~~~~~G~~~gt~~sATv~V~a~~f~a~nitf~Nt~~~~~~g~~  178 (345)
                      +||+|+|+|+|++.||+|||+|+++++|+|+|++++...+++|+++||+.||||.|.+++|+++||||+|+++.+..|+.
T Consensus       105 k~G~Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~  184 (369)
T PLN02682        105 NAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVNSPYFIAKNITFKNTAPVPPPGAL  184 (369)
T ss_pred             eCceeeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEECCCeEEEeeEEEcccccCCCCCC
Confidence            99999999999999999999999999999999998877777788899999999999999999999999999987666778


Q ss_pred             CCceEEEEEeCCeeEEEceEEe---------------------ceeeeEeccceeEEeeeEEEEeeCCCCeeEeeccCCC
Q 039106          179 GKQAVAFRISADTAAFTGCKFI---------------------GSVDFIFGNGLSFYEDCHLHAITNSYGALTAQKRGSL  237 (345)
Q Consensus       179 ~~QAvAl~v~gd~~~f~nC~~~---------------------G~VDFIfG~~~a~f~~c~i~~~~~~~g~ItA~~r~~~  237 (345)
                      ++|||||+++|||++||||+|+                     |+||||||+|+++||+|+|+++.++.|+||||+|.++
T Consensus       185 g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~  264 (369)
T PLN02682        185 GKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQSV  264 (369)
T ss_pred             cccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcccccEEecCceEEEEccEEEEecCCCeEEecCCCCCC
Confidence            8999999999999999999998                     9999999999999999999998766799999999888


Q ss_pred             CCcceeEEEccEEeecccEEeeecccccceEEEEcccCCcccccCCCCCCCCCCCcceeEEEEecccCCCCCCCCceeec
Q 039106          238 LEETGFSFVKCKVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWS  317 (345)
Q Consensus       238 ~~~~G~vf~nc~it~~g~~yLGRpW~~~srvvf~~t~~~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~  317 (345)
                      .+++||||+||+|++++++||||||++|+||||++|+|+++|+|+||.+|+.+.++++++|+||+|+||||++++||+|+
T Consensus       265 ~~~~GfvF~~C~itg~g~~yLGRpW~~yarvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~faEy~ntGpGa~~s~Rv~w~  344 (369)
T PLN02682        265 LEDTGFSFVNCKVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPNREMTVFYGQYKCTGPGANFAGRVAWS  344 (369)
T ss_pred             CCCceEEEEeeEecCCCceEeecCCCCcceEEEEeccCCCcCcCcccCcCCCCCCCCceEEEEecccCCCCCcCCCcccc
Confidence            89999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             ccCCHHHHcCCcccccccCCCCCC
Q 039106          318 RELTQEEAEPFISVEFIDGHQWLP  341 (345)
Q Consensus       318 ~~Lt~~ea~~ft~~~fi~g~~W~~  341 (345)
                      ++||++||++|+..+||+|++|+|
T Consensus       345 ~~Lt~~eA~~ft~~~fi~g~~Wl~  368 (369)
T PLN02682        345 RELTDEEAKPFISLSFIDGSEWLK  368 (369)
T ss_pred             ccCCHHHHHhhhHhhccCCCCCCC
Confidence            999999999999999999999997

>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-35
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 8e-28
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-17
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-07
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 7e-07
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 7e-07
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 147/308 (47%), Gaps = 47/308 (15%)
Query: 74  GNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDT 133
           G++ TV +A+ + P  +  R VI I AG YRE V++P     I  +G G  +T+I    T
Sbjct: 17  GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTII----T 72
Query: 134 ADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAA 193
           A +  Q G    T+ SAT A     F+A++ITF+N A     GA   QAVA R+ +D +A
Sbjct: 73  ASKNVQDGST--TFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLSA 125
Query: 194 FTGCKFI---------------------GSVDFIFGNGLSFYEDCHLHAITNSYGA---L 229
           F  C  +                     G+VDFIFGN     +DC +HA     G    +
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185
Query: 230 TAQKRGSLLEETGFSFVKCKVTGSGAL---------YLGRAWGTFSRVVFAYTYMDKIIT 280
           TAQ R    + TG    K ++  +  L         YLGR W  +SR V   + +  +I 
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245
Query: 281 PRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWS--RELTQE-EAEPFISVEFIDGH 337
           P GW+ W       T++YG+Y+ +G GA   GRV+W   + +T   EA+ F    FI G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 338 QWLPSHSL 345
            WL + + 
Sbjct: 306 SWLKATTF 313
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-114
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-112
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 2e-96
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 5e-95
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 6e-74
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  333 bits (855), Expect = e-114
 Identities = 97/315 (30%), Positives = 142/315 (45%), Gaps = 48/315 (15%)

Query: 64  TIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGA 123
            + V  +   G++ TV +A+ + P  +  R VI I AG YRE V++P     I  +G G 
Sbjct: 8   NVVVAADGS-GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66

Query: 124 DNTVIEWDDTADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAV 183
            +T+I                 T+ SAT A     F+A++ITF+N A     GA   QAV
Sbjct: 67  TSTIITASKNV------QDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAV 115

Query: 184 AFRISADTAAFTGCKFI---------------------GSVDFIFGNGLSFYEDCHLHAI 222
           A R+ +D +AF  C  +                     G+VDFIFGN     +DC +HA 
Sbjct: 116 ALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHAR 175

Query: 223 ---TNSYGALTAQKRGSLLEETGFSFVKCKVTGSGAL---------YLGRAWGTFSRVVF 270
              +     +TAQ R    + TG    K ++  +  L         YLGR W  +SR V 
Sbjct: 176 RPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV 235

Query: 271 AYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWS---RELTQEEAEP 327
             + +  +I P GW+ W       T++YG+Y+ +G GA   GRV+W       +  EA+ 
Sbjct: 236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQG 295

Query: 328 FISVEFIDGHQWLPS 342
           F    FI G  WL +
Sbjct: 296 FTPGSFIAGGSWLKA 310
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.22
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.35
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.71
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.46
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.21
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.91
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 96.86
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.8
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.69
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.65
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.53
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.41
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.38
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.33
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.3
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.21
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.14
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.13
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.11
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.09
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.02
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.93
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 95.68
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 95.21
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.59
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.72
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 87.59
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 87.43
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 86.92
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 84.96
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 83.75
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 83.39
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 82.76
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 80.93
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.4e-82  Score=612.87  Aligned_cols=272  Identities=33%  Similarity=0.593  Sum_probs=254.0

Q ss_pred             CceEEEcCCCCCCCCccHHHHHHhCCCCCcceEEEEEeCceeeeeEeecccCceEEEEecCCCceEEecCCCcccCCCCC
Q 039106           62 CKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQSG  141 (345)
Q Consensus        62 ~~~ivV~~d~G~g~f~TIq~AI~aap~~~~~r~~I~I~~G~Y~E~v~I~~~k~~ItL~G~g~~~tiI~~~~~~~~~~~~G  141 (345)
                      +.+++|++| |+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|+++++|+|+++.+..+    |
T Consensus         2 ~~~i~V~~d-Gsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~----g   76 (317)
T 1xg2_A            2 IANAVVAQD-GTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVD----G   76 (317)
T ss_dssp             CCSEEECTT-SCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTT----T
T ss_pred             CceEEECCC-CCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccC----C
Confidence            357999999 99999999999999999999999999999999999999999999999999999999999986533    3


Q ss_pred             CCCCCcccceeeeecCceEEEeeeeecCCCCCCCCCCCCceEEEEEeCCeeEEEceEEe---------------------
Q 039106          142 RPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFI---------------------  200 (345)
Q Consensus       142 ~~~gt~~sATv~V~a~~f~a~nitf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~nC~~~---------------------  200 (345)
                        .+|+.++||.|.+++|+++||||+|+++     +.++|||||++++|+++||||+|+                     
T Consensus        77 --~~t~~satv~v~a~~f~~~~lt~~Nt~g-----~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~  149 (317)
T 1xg2_A           77 --STTFRSATLAAVGQGFILQDICIQNTAG-----PAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVT  149 (317)
T ss_dssp             --CCSGGGCSEEECSTTCEEESCEEEECCC-----GGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEE
T ss_pred             --CcccceeEEEEECCCEEEEEeEEecccC-----CccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEE
Confidence              7899999999999999999999999984     456899999999999999999998                     


Q ss_pred             ceeeeEeccceeEEeeeEEEEee---CCCCeeEeeccCCCCCcceeEEEccEEeecc---------cEEeeecccccceE
Q 039106          201 GSVDFIFGNGLSFYEDCHLHAIT---NSYGALTAQKRGSLLEETGFSFVKCKVTGSG---------ALYLGRAWGTFSRV  268 (345)
Q Consensus       201 G~VDFIfG~~~a~f~~c~i~~~~---~~~g~ItA~~r~~~~~~~G~vf~nc~it~~g---------~~yLGRpW~~~srv  268 (345)
                      |+||||||+|+++||+|+|++++   ++.++||||+|+++++++||||+||+|++++         ++||||||++|+||
T Consensus       150 G~vDFIfG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~  229 (317)
T 1xg2_A          150 GTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRT  229 (317)
T ss_dssp             ESSSCEEECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEE
T ss_pred             eceeEEcCCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceE
Confidence            99999999999999999999975   3568999999999999999999999999865         69999999999999


Q ss_pred             EEEcccCCcccccCCCCCCCCCCCcceeEEEEecccCCCCCCCCceeecc--cCC-HHHHcCCcccccccCCCCCCCCCC
Q 039106          269 VFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWSR--ELT-QEEAEPFISVEFIDGHQWLPSHSL  345 (345)
Q Consensus       269 vf~~t~~~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~~--~Lt-~~ea~~ft~~~fi~g~~W~~~~~~  345 (345)
                      |||+|+|+++|+|+||.+|+++.+.++++|+||+|+||||++++||+|++  +|+ ++||++|+..+||+|++|+|.+++
T Consensus       230 v~~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~  309 (317)
T 1xg2_A          230 VVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGV  309 (317)
T ss_dssp             EEESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCC
T ss_pred             EEEecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCc
Confidence            99999999999999999999888889999999999999999999999996  664 689999999999999999998763
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 2e-95
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-67
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  284 bits (727), Expect = 2e-95
 Identities = 96/305 (31%), Positives = 139/305 (45%), Gaps = 47/305 (15%)

Query: 74  GNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDT 133
           G++ TV +A+ + P  +  R VI I AG YRE V++P     I  +G G  +T+I     
Sbjct: 17  GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKN 76

Query: 134 ADRMGQSGRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAA 193
                       T+ SAT A     F+A++ITF+N A     GA   QAVA R+ +D +A
Sbjct: 77  V------QDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLSA 125

Query: 194 FTGCKFI---------------------GSVDFIFGNGLSFYEDCHLHAI---TNSYGAL 229
           F  C  +                     G+VDFIFGN     +DC +HA    +     +
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185

Query: 230 TAQKRGSLLEETGFSFVKCKVTGSGAL---------YLGRAWGTFSRVVFAYTYMDKIIT 280
           TAQ R    + TG    K ++  +  L         YLGR W  +SR V   + +  +I 
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245

Query: 281 PRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWS---RELTQEEAEPFISVEFIDGH 337
           P GW+ W       T++YG+Y+ +G GA   GRV+W       +  EA+ F    FI G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305

Query: 338 QWLPS 342
            WL +
Sbjct: 306 SWLKA 310
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.97
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.96
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.37
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.58
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.55
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.45
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.03
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 95.93
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.89
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.37
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.36
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 91.32
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 88.3
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 87.9
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 86.7
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 82.65
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 81.91
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.6e-85  Score=629.47  Aligned_cols=273  Identities=35%  Similarity=0.634  Sum_probs=255.3

Q ss_pred             CCceEEEcCCCCCCCCccHHHHHHhCCCCCcceEEEEEeCceeeeeEeecccCceEEEEecCCCceEEecCCCcccCCCC
Q 039106           61 PCKTIKVNKNPRLGNFVTVQKAINSLPVINLCRVVIFISAGTYREKVEIPTTMAYITMIGAGADNTVIEWDDTADRMGQS  140 (345)
Q Consensus        61 ~~~~ivV~~d~G~g~f~TIq~AI~aap~~~~~r~~I~I~~G~Y~E~v~I~~~k~~ItL~G~g~~~tiI~~~~~~~~~~~~  140 (345)
                      .+++++|++| |+|||+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|++++.|+|+++.++..    
T Consensus         5 ~~p~i~V~~d-GsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~----   79 (319)
T d1gq8a_           5 VGPNVVVAAD-GSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD----   79 (319)
T ss_dssp             SCCSEEECTT-SCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTT----
T ss_pred             CCCCEEECCC-CCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccC----
Confidence            4567999999 99999999999999999999999999999999999999999999999999999999999987654    


Q ss_pred             CCCCCCcccceeeeecCceEEEeeeeecCCCCCCCCCCCCceEEEEEeCCeeEEEceEEe--------------------
Q 039106          141 GRPLGTYASATFAVNSPYFIAKNITFKNKAPLPPSGALGKQAVAFRISADTAAFTGCKFI--------------------  200 (345)
Q Consensus       141 G~~~gt~~sATv~V~a~~f~a~nitf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~nC~~~--------------------  200 (345)
                      |  .+|+.++||.|.+++|+++||||+|+++     ..++|||||++++||++||||+|+                    
T Consensus        80 ~--~~t~~sat~~v~~~~f~a~nitf~Nt~g-----~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~I  152 (319)
T d1gq8a_          80 G--STTFNSATVAAVGAGFLARDITFQNTAG-----AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFI  152 (319)
T ss_dssp             T--CCTGGGCSEEECSTTCEEEEEEEEECCC-----GGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEE
T ss_pred             C--CccccccceeeecCCeEEEeeEEEeCCC-----CCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEE
Confidence            2  5789999999999999999999999994     456899999999999999999998                    


Q ss_pred             -ceeeeEeccceeEEeeeEEEEeeC---CCCeeEeeccCCCCCcceeEEEccEEeecc---------cEEeeecccccce
Q 039106          201 -GSVDFIFGNGLSFYEDCHLHAITN---SYGALTAQKRGSLLEETGFSFVKCKVTGSG---------ALYLGRAWGTFSR  267 (345)
Q Consensus       201 -G~VDFIfG~~~a~f~~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~nc~it~~g---------~~yLGRpW~~~sr  267 (345)
                       |+||||||+|+++||+|+|+++..   +.|+||||+|+++.+++||||++|+|++++         ++||||||++++|
T Consensus       153 eG~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~  232 (319)
T d1gq8a_         153 AGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSR  232 (319)
T ss_dssp             EESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCE
T ss_pred             EeeccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcce
Confidence             999999999999999999999752   357999999999999999999999999874         5799999999999


Q ss_pred             EEEEcccCCcccccCCCCCCCCCCCcceeEEEEecccCCCCCCCCceeec---ccCCHHHHcCCcccccccCCCCCCCCC
Q 039106          268 VVFAYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAYYGGRVSWS---RELTQEEAEPFISVEFIDGHQWLPSHS  344 (345)
Q Consensus       268 vvf~~t~~~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~---~~Lt~~ea~~ft~~~fi~g~~W~~~~~  344 (345)
                      |||++|+|+++|+|+||.+|+.+.+.++++|+||+|+|||+++++||+|+   ++|+++||++|+..+||+|++|+|.++
T Consensus       233 vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~  312 (319)
T d1gq8a_         233 TVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             EEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             EEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCC
Confidence            99999999999999999999988889999999999999999999999997   478999999999999999999999876


Q ss_pred             C
Q 039106          345 L  345 (345)
Q Consensus       345 ~  345 (345)
                      +
T Consensus       313 ~  313 (319)
T d1gq8a_         313 F  313 (319)
T ss_dssp             S
T ss_pred             C
Confidence            4
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure