Citrus Sinensis ID: 039205

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
cccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEccccHHHccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcc
ccccccccccHHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccccEEcccEEEEEcccccEEccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcc
edpdplkwptkyNMRMALCWLmqgcqpgdslvfhFSGHASCiidachsgtmldlpflcrmdrrgryiwedhrprsgtwkgasggeaisfsscddnqtsadtssltdIELFNLMLYERAlsnipsigaITYSFIQaselghgttyGRMLTSMRSTIYHL
edpdplkwpTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIwedhrprsgtwkgASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
*******WPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWEDHR*******************************LTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLT*********
*****LK*PTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRG*************WKGASGGEAISFSSCDDN*************LFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRST*Y**
EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSS**********SSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
*****LKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWED*********GASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERA*SNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHASCIIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTIYHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
Q7XJE6367 Metacaspase-1 OS=Arabidop yes no 0.886 0.381 0.5 3e-45
Q7XJE5418 Metacaspase-2 OS=Arabidop no no 0.905 0.342 0.441 5e-44
Q9FMG1362 Metacaspase-3 OS=Arabidop no no 0.873 0.381 0.357 1e-25
Q75B43452 Metacaspase-1 OS=Ashbya g yes no 0.854 0.298 0.243 2e-10
A4QTY2396 Metacaspase-1 OS=Magnapor N/A no 0.854 0.340 0.236 4e-10
Q6C2Y6461 Metacaspase-1 OS=Yarrowia yes no 0.854 0.292 0.248 2e-08
Q4PEQ5402 Metacaspase-1 OS=Ustilago N/A no 0.854 0.335 0.223 7e-07
A5D9W7410 Metacaspase-1 OS=Meyerozy N/A no 0.835 0.321 0.234 9e-07
Q7S4N5441 Metacaspase-1B OS=Neurosp N/A no 0.854 0.306 0.219 1e-06
P0CM58463 Metacaspase-1 OS=Cryptoco yes no 0.854 0.291 0.241 1e-06
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/204 (50%), Positives = 116/204 (56%), Gaps = 64/204 (31%)

Query: 1   EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHAS-------------------- 40
           E+ DP + PTK NMRMAL WL+QGC  GDSLVFH+SGH S                    
Sbjct: 127 EETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETLCPL 186

Query: 41  ----------------------------CIIDACHSGTMLDLPFLCRMDRRGRYIWEDHR 72
                                        IIDACHSGT+LDLPFLCRM+R G+Y+WEDHR
Sbjct: 187 DFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWEDHR 246

Query: 73  PRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSF 132
           PRSG WKG +GGEAIS S CDD+QTSADTS               ALS I S GA+T+ F
Sbjct: 247 PRSGLWKGTAGGEAISISGCDDDQTSADTS---------------ALSKITSTGAMTFCF 291

Query: 133 IQASEL-GHGTTYGRMLTSMRSTI 155
           IQA E    GTTYG +L SMR+TI
Sbjct: 292 IQAIERSAQGTTYGSLLNSMRTTI 315
Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMG1|MCA3_ARATH Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1 Back     alignment and function description
>sp|Q75B43|MCA1_ASHGO Metacaspase-1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MCA1 PE=3 SV=1 Back     alignment and function description
>sp|A4QTY2|MCA1_MAGO7 Metacaspase-1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MCA1 PE=3 SV=2 Back     alignment and function description
>sp|Q6C2Y6|MCA1_YARLI Metacaspase-1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCA1 PE=3 SV=1 Back     alignment and function description
>sp|Q4PEQ5|MCA1_USTMA Metacaspase-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MCA1 PE=3 SV=1 Back     alignment and function description
>sp|A5D9W7|MCA1_PICGU Metacaspase-1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCA1 PE=3 SV=2 Back     alignment and function description
>sp|Q7S4N5|MCA1B_NEUCR Metacaspase-1B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mca-2 PE=3 SV=1 Back     alignment and function description
>sp|P0CM58|MCA1_CRYNJ Metacaspase-1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MCA1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
224122278 368 predicted protein [Populus trichocarpa] 0.886 0.380 0.551 4e-52
225454952 362 PREDICTED: metacaspase-1 [Vitis vinifera 0.886 0.386 0.546 8e-51
224114627 372 predicted protein [Populus trichocarpa] 0.886 0.376 0.536 1e-50
224114623 349 predicted protein [Populus trichocarpa] 0.886 0.401 0.536 2e-50
148906920 363 unknown [Picea sitchensis] 0.886 0.385 0.536 8e-50
356524447 832 PREDICTED: uncharacterized protein LOC10 0.981 0.186 0.507 4e-49
148906247 363 unknown [Picea sitchensis] 0.886 0.385 0.532 4e-49
255539965 367 caspase, putative [Ricinus communis] gi| 0.905 0.389 0.524 6e-49
356463698 356 metacaspase 9 [Triticum monococcum] 0.886 0.393 0.517 7e-48
297744959 291 unnamed protein product [Vitis vinifera] 0.898 0.487 0.512 1e-47
>gi|224122278|ref|XP_002318795.1| predicted protein [Populus trichocarpa] gi|222859468|gb|EEE97015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/203 (55%), Positives = 122/203 (60%), Gaps = 63/203 (31%)

Query: 1   EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHAS-------------------- 40
           E+ DP + PTKYNMR+AL WL+QGCQPGDSLVFHFSGH S                    
Sbjct: 131 EETDPYRRPTKYNMRLALSWLVQGCQPGDSLVFHFSGHGSQQKDQNGDELDGYDETLCPT 190

Query: 41  ----------------------------CIIDACHSGTMLDLPFLCRMDRRGRYIWEDHR 72
                                        IIDACHSGT+LDLPFLCRMDR G+Y+WEDHR
Sbjct: 191 DFETQGMIVDDEINEIIVKPLSHGVKLHAIIDACHSGTVLDLPFLCRMDRSGKYVWEDHR 250

Query: 73  PRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSF 132
           PRSG WKG SGGEAISFSSCDD+QTSADTS               ALS I S GA+TYSF
Sbjct: 251 PRSGEWKGTSGGEAISFSSCDDDQTSADTS---------------ALSKITSTGAMTYSF 295

Query: 133 IQASELGHGTTYGRMLTSMRSTI 155
           I A E GH TTYG ML +MRSTI
Sbjct: 296 ILAIERGHATTYGSMLNAMRSTI 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454952|ref|XP_002280421.1| PREDICTED: metacaspase-1 [Vitis vinifera] gi|297744960|emb|CBI38552.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114627|ref|XP_002332327.1| predicted protein [Populus trichocarpa] gi|222832574|gb|EEE71051.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114623|ref|XP_002332326.1| predicted protein [Populus trichocarpa] gi|222832573|gb|EEE71050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|148906920|gb|ABR16605.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356524447|ref|XP_003530840.1| PREDICTED: uncharacterized protein LOC100808327 [Glycine max] Back     alignment and taxonomy information
>gi|148906247|gb|ABR16279.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|255539965|ref|XP_002511047.1| caspase, putative [Ricinus communis] gi|223550162|gb|EEF51649.1| caspase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356463698|gb|AET08887.1| metacaspase 9 [Triticum monococcum] Back     alignment and taxonomy information
>gi|297744959|emb|CBI38551.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
TAIR|locus:2204798367 MC1 "metacaspase 1" [Arabidops 0.626 0.269 0.643 1.2e-47
TAIR|locus:2117288418 MC2 "metacaspase 2" [Arabidops 0.658 0.248 0.561 1.8e-46
TAIR|locus:2173398362 MC3 "metacaspase 3" [Arabidops 0.411 0.179 0.558 1.3e-15
UNIPROTKB|A4QTY2396 MCA1 "Metacaspase-1" [Magnapor 0.221 0.088 0.542 1.7e-12
POMBASE|SPCC1840.04425 pca1 "metacaspase Pca1" [Schiz 0.189 0.070 0.533 3.3e-10
SGD|S000005723432 MCA1 "Ca2+-dependent cysteine 0.221 0.081 0.485 2e-09
CGD|CAL0003470448 MCA1 [Candida albicans (taxid: 0.189 0.066 0.466 5.6e-09
UNIPROTKB|Q5ANA8448 MCA1 "Metacaspase-1" [Candida 0.189 0.066 0.466 5.6e-09
ASPGD|ASPL0000043471420 AN2503 [Emericella nidulans (t 0.240 0.090 0.447 1e-08
TAIR|locus:2207430 410 MC5 "metacaspase 5" [Arabidops 0.202 0.078 0.5 4.1e-05
TAIR|locus:2204798 MC1 "metacaspase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 358 (131.1 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 74/115 (64%), Positives = 84/115 (73%)

Query:    42 IIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSSCDDNQTSADT 101
             IIDACHSGT+LDLPFLCRM+R G+Y+WEDHRPRSG WKG +GGEAIS S CDD+QTSADT
Sbjct:   216 IIDACHSGTVLDLPFLCRMNRAGQYVWEDHRPRSGLWKGTAGGEAISISGCDDDQTSADT 275

Query:   102 SSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELG-HGTTYGRMLTSMRSTI 155
             S               ALS I S GA+T+ FIQA E    GTTYG +L SMR+TI
Sbjct:   276 S---------------ALSKITSTGAMTFCFIQAIERSAQGTTYGSLLNSMRTTI 315
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA
GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2117288 MC2 "metacaspase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173398 MC3 "metacaspase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4QTY2 MCA1 "Metacaspase-1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC1840.04 pca1 "metacaspase Pca1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005723 MCA1 "Ca2+-dependent cysteine protease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003470 MCA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANA8 MCA1 "Metacaspase-1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000043471 AN2503 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2207430 MC5 "metacaspase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
pfam00656228 pfam00656, Peptidase_C14, Caspase domain 5e-15
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain Back     alignment and domain information 
 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 36/130 (27%)

Query: 9   PTKYNMRMALCWLMQGCQPGDSLVFHFSGH-------------------------ASC-- 41
            T   +R AL        PGDS V  +SGH                          +C  
Sbjct: 44  LTAEEIRRALREFAARADPGDSFVVVYSGHGVQGEVYGGDGYLVPVDALDDVFNGLNCPS 103

Query: 42  --------IIDACHSGTMLDLPFLCRMDRRGRYIWEDHRPRSGTWKGASGGEAISFSSCD 93
                   IIDAC  G + D                D    +G  K  +  + +   S  
Sbjct: 104 LKGKPKLFIIDACRGGPLDDGVKSDSGSSGESE-SVDDSEAAGLSKIPAPADFLVAYSTT 162

Query: 94  DNQTSADTSS 103
             Q S   + 
Sbjct: 163 PGQVSYRGTG 172

Length = 228

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 158
KOG1546362 consensus Metacaspase involved in regulation of ap 99.97
PF00656248 Peptidase_C14: Caspase domain; InterPro: IPR011600 99.83
PF01650256 Peptidase_C13: Peptidase C13 family; InterPro: IPR 98.92
cd00032243 CASc Caspase, interleukin-1 beta converting enzyme 98.72
COG4249 380 Uncharacterized protein containing caspase domain 98.66
smart00115241 CASc Caspase, interleukin-1 beta converting enzyme 98.64
PF14538154 Raptor_N: Raptor N-terminal CASPase like domain 98.04
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 95.75
KOG1348 477 consensus Asparaginyl peptidases [Posttranslationa 94.69
COG4249 380 Uncharacterized protein containing caspase domain 93.29
KOG1349309 consensus Gpi-anchor transamidase [Posttranslation 92.59
PF12770287 CHAT: CHAT domain 92.33
COG5206 382 GPI8 Glycosylphosphatidylinositol transamidase (GP 91.73
KOG1321395 consensus Protoheme ferro-lyase (ferrochelatase) [ 80.46
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=5.8e-31  Score=220.92  Aligned_cols=138  Identities=39%  Similarity=0.658  Sum_probs=112.2

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhhCCCCCEEEEEeccCCC----------------------------------------
Q 039205            1 EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHAS----------------------------------------   40 (158)
Q Consensus         1 ~~~~~~~~aTr~nI~~al~~L~~~a~~gD~v~f~fSGHG~----------------------------------------   40 (158)
                      +++++..+||++||++||.||++.++|||.+||||||||+                                        
T Consensus       111 t~~s~~~~PT~~Nir~Al~wLV~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~p  190 (362)
T KOG1546|consen  111 TDESPVRIPTGKNIRRALRWLVESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRP  190 (362)
T ss_pred             CCCcccccCcHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhc
Confidence            4667779999999999999999999999999999999999                                        


Q ss_pred             --------cccccCCCCCcCCcchhhccC---ccccccccccCCCC----C---------------Ccc-----------
Q 039205           41 --------CIIDACHSGTMLDLPFLCRMD---RRGRYIWEDHRPRS----G---------------TWK-----------   79 (158)
Q Consensus        41 --------~i~DcCHSG~~~r~p~~~~~~---~~g~~~~~~~~~~~----g---------------~~~-----------   79 (158)
                              +|+|+||||+++++|++++++   +.+++.|++.++..    |               .+.           
T Consensus       191 lp~G~~lt~I~DSCHSGgliDlp~i~~~~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~  270 (362)
T KOG1546|consen  191 LPKGCKLTAISDSCHSGGLIDLPEIERTKGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTI  270 (362)
T ss_pred             cCCCceEEEEeecccCCCcccchhheecccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcch
Confidence                    999999999999999999986   56666666543110    0               000           


Q ss_pred             -------cCCCCCeEEEEecCCCccccccccchhHHHHHHHHHHhhccCCCccchHHHHHHHHHhcCCC-CCHHHHHHHH
Q 039205           80 -------GASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHG-TTYGRMLTSM  151 (158)
Q Consensus        80 -------~~~~~~~i~lsAc~~~q~a~e~~~~~~~~~~~~~~~~~~~~~g~~~GafT~all~~L~~~~~-~s~~~l~~~v  151 (158)
                             .....+.|++|+|+++|+|+++.                 ..|...||||+|+.++|.++++ .+..+|+-+.
T Consensus       271 ~~~~~~~~~~~d~~illSgcqadqtSad~~-----------------~~G~~~gAms~Aiq~i~~~n~g~~~~~~lvl~~  333 (362)
T KOG1546|consen  271 GDLGRQLKDSHDNGILLSGCQADQTSADAS-----------------TYGHLYGAMSNAIQEILTENKGRITNKLLVLRA  333 (362)
T ss_pred             hhhhhhcccCCCCceEEecccccccccccc-----------------cCCcchhHHHHHHHHHHhcCcccchhHHHHHHH
Confidence                   13347899999999999999998                 6788899999999999999776 5566666555


Q ss_pred             HHHH
Q 039205          152 RSTI  155 (158)
Q Consensus       152 r~~v  155 (158)
                      |..+
T Consensus       334 ~~~~  337 (362)
T KOG1546|consen  334 RGAL  337 (362)
T ss_pred             hhhh
Confidence            5544

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues Back     alignment and domain information
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12770 CHAT: CHAT domain Back     alignment and domain information
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
4f6o_A350 Crystal Structure Of The Yeast Metacaspase Yca1 Len 2e-07
4afr_A367 The Structure Of Metacaspase 2 (C213a Mutant) From 7e-06
4afp_A367 The Structure Of Metacaspase 2 From T. Brucei Deter 1e-05
4af8_A367 The Structural Basis For Metacaspase Substrate Spec 1e-05
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1 Length = 350 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 83/240 (34%), Gaps = 105/240 (43%)
Query: 4   DPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHA------------------------ 39
           D ++ PT+ NM  A+ WL++  QP DSL  H+SGH                         
Sbjct: 104 DLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFE 163
Query: 40  ------------------------SCIIDACHSGTMLDLPFL--CRMDRRGRYIWEDHRP 73
                                   + + D+CHSGT+LDLP+    +   +   IW+D   
Sbjct: 164 TQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKEPNIWKDVGQ 223
Query: 74  RS-----------------------GTWKGASGGEA-------ISFSSCD--------DN 95
                                     T KG  G          I FS+ D        DN
Sbjct: 224 DGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDN 283
Query: 96  QTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRSTI 155
           QTSAD                 A+ +  + GA++++FI+   L    +Y  +L +MR  +
Sbjct: 284 QTSAD-----------------AVEDGQNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKEL 326
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T. Brucei Length = 367 Back     alignment and structure
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined In The Presence Of Samarium Length = 367 Back     alignment and structure
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity And Activation Length = 367 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 1e-21
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 9e-14
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 2e-10
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367 Back     alignment and structure
 Score = 88.1 bits (217), Expect = 1e-21
 Identities = 41/202 (20%), Positives = 62/202 (30%), Gaps = 58/202 (28%)

Query: 1   EDPDPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHAS-------------------- 40
             P     PT+ N+   + WL++  +PGD L FH+SGH +                    
Sbjct: 141 NFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSDEKYDQCIAPVD 200

Query: 41  ---------------------------CIIDACHSGTMLDLPFLCRMDRRGRYIWEDHRP 73
                                       + D  HSG+++DLPF        +     H  
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMK 260

Query: 74  RSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFI 133
           R        G   +  S C D QTSAD  +                 +  + GA T    
Sbjct: 261 RIREGNDVLGD-VMMISGCADEQTSADVKNTATFGTG----------STGAGGAATQCIT 309

Query: 134 QASELGHGTTYGRMLTSMRSTI 155
                    +YG++L   R  +
Sbjct: 310 CMLMNNQSLSYGKLLIETRDML 331
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350 Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 100.0
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 100.0
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 99.94
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 99.65
1f1j_A305 Caspase-7 protease; caspase-7, cysteine protease, 98.33
2j32_A250 Caspase-3; Pro-caspase3, thiol protease, hydrolase 98.32
3sir_A259 Caspase; hydrolase; 2.68A {Drosophila melanogaster 98.28
1m72_A272 Caspase-1; caspase, cysteine protease, hydrolase-h 98.27
4ehd_A277 Caspase-3; caspase, apoptosis, allosteric inhibiti 98.23
2nn3_C310 Caspase-1; cysteine protease, hydrolase; 3.00A {Sp 98.19
3h11_B271 Caspase-8; cell death, apoptosis, caspase, alterna 98.09
3e4c_A302 Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna 98.02
1nw9_B277 Caspase 9, apoptosis-related cysteine protease; XI 97.95
3od5_A278 Caspase-6; caspase domain, apoptotic protease, hyd 97.93
2fp3_A316 Caspase NC; apoptosis, initiator caspase activatio 97.82
3h11_A272 CAsp8 and FADD-like apoptosis regulator; cell deat 97.13
2h54_A178 Caspase-1; allosteric site, dimer interface, hydro 96.31
1pyo_A167 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 90.59
2dko_A146 Caspase-3; low barrier hydrogen bond, caspase, dru 88.23
1qtn_A164 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 86.97
2ql9_B97 Caspase-7; cysteine protease, apoptosis, thiol pro 82.92
2ql9_A173 Caspase-7; cysteine protease, apoptosis, thiol pro 82.38
2dko_B103 Caspase-3; low barrier hydrogen bond, caspase, dru 81.99
2xzd_B118 Caspase-3; hydrolase-protein binding complex, de n 81.38
1sc3_B88 Interleukin-1 beta convertase; malonate-bound casp 80.07
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.1e-36  Score=259.39  Aligned_cols=134  Identities=37%  Similarity=0.655  Sum_probs=98.2

Q ss_pred             CCCCcchHHHHHHHHHHHHhhCCCCCEEEEEeccCCC-------------------------------------------
Q 039205            4 DPLKWPTKYNMRMALCWLMQGCQPGDSLVFHFSGHAS-------------------------------------------   40 (158)
Q Consensus         4 ~~~~~aTr~nI~~al~~L~~~a~~gD~v~f~fSGHG~-------------------------------------------   40 (158)
                      ++...|||+||+++|+||+++++|||+|||||||||.                                           
T Consensus       104 ~~~~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~  183 (350)
T 4f6o_A          104 DLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQ  183 (350)
T ss_dssp             CGGGSCCHHHHHHHHHHHHTTCCTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCT
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCC
Confidence            4556799999999999999999999999999999998                                           


Q ss_pred             -----cccccCCCCCcCCcchhhccCccccc----cccccCC--------------------CCCCcc------------
Q 039205           41 -----CIIDACHSGTMLDLPFLCRMDRRGRY----IWEDHRP--------------------RSGTWK------------   79 (158)
Q Consensus        41 -----~i~DcCHSG~~~r~p~~~~~~~~g~~----~~~~~~~--------------------~~g~~~------------   79 (158)
                           +||||||||+++|+||.++.+  |.+    .|++...                    ..+++|            
T Consensus       184 g~~vt~IlD~ChSGt~ldlp~~~~~~--g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (350)
T 4f6o_A          184 GVRLTALFDSCHSGTVLDLPYTYSTK--GIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDR  261 (350)
T ss_dssp             TCEEEEEECSSSCTTTTCCSEEEETT--EEEECCCC--------------------------------------------
T ss_pred             CCeEEEEEccCCCCcccccccccccc--cccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccch
Confidence                 899999999999999988752  221    1322100                    001111            


Q ss_pred             ------cCCCCCeEEEEecCCCccccccccchhHHHHHHHHHHhhccCCCccchHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039205           80 ------GASGGEAISFSSCDDNQTSADTSSLTDIELFNLMLYERALSNIPSIGAITYSFIQASELGHGTTYGRMLTSMRS  153 (158)
Q Consensus        80 ------~~~~~~~i~lsAc~~~q~a~e~~~~~~~~~~~~~~~~~~~~~g~~~GafT~all~~L~~~~~~s~~~l~~~vr~  153 (158)
                            ..+++++|+||||+|+|+|+|+.                 ++|..+|||||+|+++|+++|++||.+|++.||+
T Consensus       262 ~~~~~~~~~~~~vi~~SgCkD~QtSaD~~-----------------~~g~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~  324 (350)
T 4f6o_A          262 ERVRQIKFSAADVVMLSGSKDNQTSADAV-----------------EDGQNTGAMSHAFIKVMTLQPQQSYLSLLQNMRK  324 (350)
T ss_dssp             -------CCCSEEEEEEEEC------------------------------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHH
T ss_pred             hhhhhccCCCCCEEEEEecCCCCchhhhc-----------------cCCceeehhHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence                  35678999999999999999998                 6688999999999999999999999999999999


Q ss_pred             HHh
Q 039205          154 TIY  156 (158)
Q Consensus       154 ~v~  156 (158)
                      .|+
T Consensus       325 ~L~  327 (350)
T 4f6o_A          325 ELA  327 (350)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            987
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Back     alignment and structure
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Back     alignment and structure
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Back     alignment and structure
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Back     alignment and structure
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Back     alignment and structure
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Back     alignment and structure
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Back     alignment and structure
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Back     alignment and structure
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Back     alignment and structure
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Back     alignment and structure
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Back     alignment and structure
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Back     alignment and structure
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Back     alignment and structure
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Back     alignment and structure
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Back     alignment and structure
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Back     alignment and structure
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Back     alignment and structure
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B Back     alignment and structure
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Back     alignment and structure
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ... Back     alignment and structure
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B Back     alignment and structure
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
d1nw9b_277 Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} 99.53
g1sc3.1261 Interleukin-1beta converting enzyme (a cysteine pr 99.25
g1qtn.1242 Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} 99.18
d1m72a_256 Caspase-1 {Fall armyworm (Spodoptera frugiperda) [ 98.87
d1f1ja_245 Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} 98.82
g1nme.1238 Apopain (caspase-3, cpp32) {Human (Homo sapiens) [ 98.81
g1pyo.1257 Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} 98.77
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=113.71  Aligned_cols=130  Identities=14%  Similarity=0.006  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHHHHHh-hCCCCCEEEEEeccCCC------------------------------------------cccc
Q 039205            8 WPTKYNMRMALCWLMQ-GCQPGDSLVFHFSGHAS------------------------------------------CIID   44 (158)
Q Consensus         8 ~aTr~nI~~al~~L~~-~a~~gD~v~f~fSGHG~------------------------------------------~i~D   44 (158)
                      .+|++.|++++.++.. ..+++|.++|||+|||.                                          +|+|
T Consensus        67 nlt~~~~~~~l~~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~id  146 (277)
T d1nw9b_          67 DLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQ  146 (277)
T ss_dssp             SCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEE
T ss_pred             CCCHHHHHHHHHHhhhhcccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEe
Confidence            4799999999987765 56899999999999995                                          8999


Q ss_pred             cCCCCCcCCcchhhccCc--c--cc------cccccc----CCCCCCcccCCCCCeEEEEecCCCccccccccchhHHHH
Q 039205           45 ACHSGTMLDLPFLCRMDR--R--GR------YIWEDH----RPRSGTWKGASGGEAISFSSCDDNQTSADTSSLTDIELF  110 (158)
Q Consensus        45 cCHSG~~~r~p~~~~~~~--~--g~------~~~~~~----~~~~g~~~~~~~~~~i~lsAc~~~q~a~e~~~~~~~~~~  110 (158)
                      ||++|...+.........  .  ..      ..+...    ....+........+.++..||.+++.|++..        
T Consensus       147 aCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~~--------  218 (277)
T d1nw9b_         147 ACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDP--------  218 (277)
T ss_dssp             EEC---------------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCT--------
T ss_pred             cccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccceEEecCC--------
Confidence            999998766432111000  0  00      000000    0001111235567889999999999997643        


Q ss_pred             HHHHHHhhccCCCccchHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhc
Q 039205          111 NLMLYERALSNIPSIGAITYSFIQASEL-GHGTTYGRMLTSMRSTIYH  157 (158)
Q Consensus       111 ~~~~~~~~~~~g~~~GafT~all~~L~~-~~~~s~~~l~~~vr~~v~~  157 (158)
                                  ..+|.||++|+++|++ .+..+..+++.+|+..|.+
T Consensus       219 ------------~~gS~f~~~L~~~l~~~~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         219 ------------KSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             ------------TSCBHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHT
T ss_pred             ------------CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence                        3679999999999998 5678999999999999854
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Back     information, alignment and structure
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure