Citrus Sinensis ID: 039232

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYSSSAKKPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccEEEEEccccccccccccccccccccccEEEEEEEEEEEEEEEEcccccccccccccccccccccccEEEEEEEccEEEEEccHHHHHHHHccccccccEEEEEcccccccHHHHHHHHccccccEEEEcccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHcccccccccccccEEEEEcccEEEEEEcHHHHHHHcccccccccEEEEEcccccccHHHHHHHccccccEEEEEHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
msclshvaSYSAAILRGThnfigrsnlhyqsyynplkinyghlgnksvNLEFLVTRFRLQcysssakkprsrklktepqmkqgkdeffVVRKGDLVGVYKSFTECQAqlgssichppvsvykgnalpkgtEEYLASHGLKNALYTIRAADLTedlfgslmpctlq
Flexible Loop (DISEMBL)
MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCysssakkprsrklktepqmkqgkdeffVVRKGDLVGVYKSFTECQAqlgssichppvsVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Low Complexity Region (SEG)
MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYSSSAKKPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Disordered region (IsUnstruct)
****SHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCY***********************EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMP****
Disordered Region (DISOPRED)
********SYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFR****************************FFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Disordered Region (DISEMBL)
MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYS*****************KQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Disordered Region (DISPRO)
*SCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCY*********************KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYSSSAKKPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
296086505	445	unnamed protein product [Vitis vinifera]	0.993	0.368	0.610	5e-51
449486556	235	PREDICTED: uncharacterized LOC101210930	0.981	0.689	0.511	6e-40
449452100	373	PREDICTED: uncharacterized protein LOC10	0.975	0.431	0.514	1e-39
356565894	345	PREDICTED: uncharacterized protein LOC10	0.927	0.443	0.552	2e-39
356526860	356	PREDICTED: uncharacterized protein LOC10	0.951	0.441	0.523	8e-38
359473412	453	PREDICTED: uncharacterized protein LOC10	0.521	0.189	0.767	7e-33
255588182	262	nuclease, putative [Ricinus communis] gi	0.521	0.328	0.744	1e-31
224108115	282	predicted protein [Populus trichocarpa]	0.521	0.304	0.720	1e-30
334182806	353	RNase H domain-containing protein [Arabi	0.969	0.453	0.431	2e-28
9369399	360	T23E23.24 [Arabidopsis thaliana]	0.969	0.444	0.431	2e-28

>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 128/167 (76%), Gaps = 3/167 (1%)

Query: 1   MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
           M+CL HV+SY +AIL  T  FI +S+L Y    +  KIN+ +   K+ NLE ++TRFR+Q
Sbjct: 64  MNCLPHVSSYYSAILSKTSRFIAKSSL-YGCSTSSWKINFENANVKTNNLELMLTRFRVQ 122

Query: 61  CYSSSAK--KPRSRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
            YSS  +  K +S+KL+++P M++ KD FFVVRKGD+VGVYK+F++CQAQ+GSSIC PPV
Sbjct: 123 SYSSRGRGAKSQSQKLESKPVMEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPV 182

Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           SVYKG  LPK TEEYL S GL+NALYTIRAADL EDLFG LMPC  Q
Sbjct: 183 SVYKGYYLPKDTEEYLVSRGLRNALYTIRAADLKEDLFGKLMPCAFQ 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486556|ref|XP_004157331.1| PREDICTED: uncharacterized LOC101210930 [Cucumis sativus]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 122/174 (70%), Gaps = 12/174 (6%)

Query: 1   MSCLSHVASYSAAILRGTH-NFIGRSNLH--YQSYYNPLKINYGHLGNKSVNLEFLVTRF 57
           M+C S V++Y+  I R T+  F   +++H    +Y+     ++ ++  K+  L+ L +RF
Sbjct: 1   MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCSNAYWTS---SFHNVAVKTTALDSLCSRF 57

Query: 58  RLQCYSS-SAKKPR-----SRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGS 111
            L+CYS+   +KPR     S KL +EP ++    +FFVVRKGD+VGVYKSF++CQAQ+GS
Sbjct: 58  GLRCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGS 117

Query: 112 SICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           SIC  PVSV+KG++LPK TEEYLAS GLKNALYTI+AAD+  DLFGSL PCT  
Sbjct: 118 SICDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTFH 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452100|ref|XP_004143798.1| PREDICTED: uncharacterized protein LOC101210930 [Cucumis sativus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 122/173 (70%), Gaps = 12/173 (6%)

Query: 1   MSCLSHVASYSAAILRGTH-NFIGRSNLH--YQSYYNPLKINYGHLGNKSVNLEFLVTRF 57
           M+C S V++Y+  I R T+  F   +++H    +Y+     ++ ++  K+  L+ L +RF
Sbjct: 1   MNCFSQVSTYTRVIFRRTNLVFAASTSIHGCSNAYWTS---SFHNVAVKTTALDSLCSRF 57

Query: 58  RLQCYSS-SAKKPR-----SRKLKTEPQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGS 111
            L+CYS+   +KPR     S KL +EP ++    +FFVVRKGD+VGVYKSF++CQAQ+GS
Sbjct: 58  GLRCYSTRKPRKPRKPTSPSPKLDSEPPVESEMGDFFVVRKGDVVGVYKSFSDCQAQIGS 117

Query: 112 SICHPPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTL 164
           SIC  PVSV+KG++LPK TEEYLAS GLKNALYTI+AAD+  DLFGSL PCT 
Sbjct: 118 SICDLPVSVFKGHSLPKDTEEYLASVGLKNALYTIKAADMRPDLFGSLAPCTF 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565894|ref|XP_003551171.1| PREDICTED: uncharacterized protein LOC100809644 [Glycine max]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 112/163 (68%), Gaps = 10/163 (6%)

Query: 4   LSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQCYS 63
           LS ++SY+A+I+  T   I   +LH+Q    P K  Y   G +S   EF VT    +CYS
Sbjct: 4   LSQLSSYTASIVGSTVRLIANRSLHHQCCSLPAKPEY--RGIRSFRSEFAVT---TRCYS 58

Query: 64  SSAKKPRSRKLKTEPQ-MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYK 122
           +     + RK K EP+ MKQ KD F+VVRKGD+VG+Y S  + QAQ+GSS+C+PPVSV+K
Sbjct: 59  AK----KGRKSKVEPEAMKQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVFK 114

Query: 123 GNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           G +L K TEEYL SHGLKNALYTIRA DL EDLFG L+PC LQ
Sbjct: 115 GYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPLQ 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526860|ref|XP_003532034.1| PREDICTED: uncharacterized protein LOC100779114 [Glycine max]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 112/170 (65%), Gaps = 13/170 (7%)

Query: 1   MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
           M+ LS ++SY+AAI+  T   I   +L ++    P K  Y   G +S   EF +T  R  
Sbjct: 1   MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEY--RGIRSFRSEFALTAAR-- 56

Query: 61  CYSSSAKKPRSRKLKTEPQ-----MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICH 115
           CYS+     + RK K EP+     M+Q KD F+VVRKGD+VG+Y S  + QAQ+GSS+C+
Sbjct: 57  CYSAK----KGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCN 112

Query: 116 PPVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           PPVSVYKG +L K TEEYL SHGLKNALYTIRA DL EDLFG L+PC  Q
Sbjct: 113 PPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQ 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 74/86 (86%)

Query: 80  MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
           M++ KD FFVVRKGD+VGVYK+F++CQAQ+GSSIC PPVSVYKG  LPK TEEYL S GL
Sbjct: 1   MEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGL 60

Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
           +NALYTIRAADL EDLFG LMPC  Q
Sbjct: 61  RNALYTIRAADLKEDLFGKLMPCAFQ 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis] gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%)

Query: 80  MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
           M+Q KD FFVVRKGD+VGVYKSFT+CQAQ+GSS+C PPVSVYKG +L K TEEYL S GL
Sbjct: 1   MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSSVCDPPVSVYKGYSLSKDTEEYLVSRGL 60

Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
           +NALY IRA DL EDLFG+L+PC  Q
Sbjct: 61  QNALYAIRAQDLKEDLFGTLVPCPFQ 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa] gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 80  MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
           M    D FFVVRKGD+VGVYK+F +CQAQ+GSSIC PPVSVYKG +L K +E YL SHGL
Sbjct: 1   MDHENDAFFVVRKGDVVGVYKNFADCQAQVGSSICDPPVSVYKGYSLSKDSEAYLVSHGL 60

Query: 140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
           +NALYT+RAADL EDLFG LMPC  Q
Sbjct: 61  QNALYTVRAADLKEDLFGVLMPCPFQ 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182806|ref|NP_173819.2| RNase H domain-containing protein [Arabidopsis thaliana] gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 7/167 (4%)

Query: 1   MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
           M+CLSH  SY A  L    +++     +   +Y P K        K V +  +     + 
Sbjct: 1   MNCLSHARSYIALGLLKRSSYVSSIPWNECFFYMPSKSCL-----KPVAVSSVFGICSVH 55

Query: 61  CYSSSAKKPRSRKLKTE--PQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
            YSS +K  +S+ L +     + + KD FFVVRKGD++G+YK  ++CQAQ+GSS+   PV
Sbjct: 56  SYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPV 115

Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           SVYKG +LPK TEEYL+S GLK  LY++RA+DL +D+FG+L PC  Q
Sbjct: 116 SVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQ 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 7/167 (4%)

Query: 1   MSCLSHVASYSAAILRGTHNFIGRSNLHYQSYYNPLKINYGHLGNKSVNLEFLVTRFRLQ 60
           M+CLSH  SY A  L    +++     +   +Y P K        K V +  +     + 
Sbjct: 1   MNCLSHARSYIALGLLKRSSYVSSIPWNECFFYMPSKSCL-----KPVAVSSVFGICSVH 55

Query: 61  CYSSSAKKPRSRKLKTE--PQMKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPV 118
            YSS +K  +S+ L +     + + KD FFVVRKGD++G+YK  ++CQAQ+GSS+   PV
Sbjct: 56  SYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPV 115

Query: 119 SVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
           SVYKG +LPK TEEYL+S GLK  LY++RA+DL +D+FG+L PC  Q
Sbjct: 116 SVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQ 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2176152	322	AT5G51080 [Arabidopsis thalian	0.939	0.481	0.426	3.5e-27
TAIR|locus:2096692	294	AT3G01410 [Arabidopsis thalian	0.521	0.292	0.534	1.1e-23

TAIR|locus:2176152 AT5G51080 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 72/169 (42%), Positives = 101/169 (59%)

Query:     1 MSCLSHVASYSAAILRGTHNFIGRSNLHY-QSYYNPLKINYGHLGNKSVNLEFLVTRFRL 59
             M+  S   SY + +L    +++  S++ + Q +Y  LK +   L   SV++        +
Sbjct:     1 MNRFSRARSYISLVLFRKSSYV-TSHIPWNQCFYTSLKSS---LKPASVSVS------SV 50

Query:    60 QCYSSSAKKPRSRKLKTEPQMKQG---KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHP 116
              CYSS +K  +S+  K+   +      KD FFVVRKGD+VG+YK   +CQAQ+GSS+  P
Sbjct:    51 HCYSSRSKTAKSKMSKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDP 110

Query:   117 PVSVYKGNALPKGTEEYLASHGLKNALYTIRAADLTEDLFGSLMPCTLQ 165
             PVSVYKG +L K TEE L++ GLK  LY  RA DL ED+FG+L PC  Q
Sbjct:   111 PVSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGALTPCLFQ 159

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=ISS

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2096692 AT3G01410 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 46/86 (53%), Positives = 66/86 (76%)

Query:    80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHGL 139
             M+  KD F++VRKGD++GVY+S +ECQ Q GSS+ HP +SVYKG   PKG E+ L+S G+
Sbjct:     5 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query:   140 KNALYTIRAADLTEDLFGSLMPCTLQ 165
             KNAL+++ A+ + +D FG L+PC +Q
Sbjct:    65 KNALFSVNASHVKDDAFGKLIPCPVQ 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       165   0.00093  107 3  11 22  0.38    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  148 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.18u 0.10s 15.28t   Elapsed:  00:00:01
  Total cpu time:  15.18u 0.10s 15.28t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:56 2013   End:  Fri May 10 15:31:57 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=ISS

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006310 "DNA recombination" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam01693	43	pfam01693, Cauli_VI, Caulimovirus viroplasmin	0.004

>gnl|CDD|201924 pfam01693, Cauli_VI, Caulimovirus viroplasmin

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 87  FFVVRKGDLVGVYKSFTECQAQ 108
           F+ V KG   G+Y S+ EC+ Q
Sbjct: 1   FYAVWKGRKPGIYTSWEECKKQ 22

This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PF01693	44	Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR0	99.74
COG3341	225	Predicted double-stranded RNA/RNA-DNA hybrid bindi	99.67
KOG3752	371	consensus Ribonuclease H [Replication, recombinati	98.9

>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []

Probab=99.74  E-value=1.3e-18  Score=111.60  Aligned_cols=44  Identities=30%  Similarity=0.647  Sum_probs=38.9

Q ss_pred             eeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHH
Q 039232           86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEY  133 (165)
Q Consensus        86 KfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeey  133 (165)
                      |||||..|+.+|||++|+||++||.|    +||+.||+|.|.+||++|
T Consensus         1 k~YaV~~G~~~GIy~~W~~~~~~v~g----~~ga~~k~F~t~~eA~~~   44 (44)
T PF01693_consen    1 KYYAVFNGRQPGIYTSWAECKKQVSG----YPGAIYKSFKTREEAEEF   44 (44)
T ss_dssp             -EEEEECSSS-EEECCHHHHHHHCTT-----TT-EEEEESSHHHHHHH
T ss_pred             CEEEEEeCCCCCeECCHHHHHHHhCC----CCCceECCcCCHHHHhhC
Confidence            79999999999999999999999995    999999999999999987

This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.

>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]

Probab=99.67  E-value=3.3e-17  Score=138.15  Aligned_cols=48  Identities=29%  Similarity=0.596  Sum_probs=45.8

Q ss_pred             CeeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHHHHh
Q 039232           85 DEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLAS  136 (165)
Q Consensus        85 dKfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeeyL~s  136 (165)
                      ++|||||+||++|||+||+||.+||.|    +|||.||+|.+.+||++||.+
T Consensus         5 ~nyYaVk~GR~tGIyktW~Ec~~qVkG----y~ga~YKsf~s~EeA~a~~~g   52 (225)
T COG3341           5 KNYYAVKKGRKTGIYKTWDECEKQVKG----YPGAKYKSFKSYEEAEAYCEG   52 (225)
T ss_pred             cceeEEecccccceeccHHHHHHHhcC----CCcccccccccHHHHHHHhcc
Confidence            349999999999999999999999996    999999999999999999985

>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]

Probab=98.90  E-value=9.3e-10  Score=98.56  Aligned_cols=52  Identities=21%  Similarity=0.509  Sum_probs=48.7

Q ss_pred             cccCCCeeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHHHH
Q 039232           80 MKQGKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLA  135 (165)
Q Consensus        80 m~~~kdKfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeeyL~  135 (165)
                      |.....+||+|..|+..|||.||+||..||.|    |++++||-|.+.+||..|+.
T Consensus        21 ~~r~~~~fyava~gr~~Gvy~tw~e~k~qv~~----y~~~~~kkf~t~~eA~sf~~   72 (371)
T KOG3752|consen   21 LSRSTRKFYAVARGRKTGVYSTWDECKEQVDG----YGNARYKKFTTEEEAQSFVR   72 (371)
T ss_pred             hcccccceeeeecccccccccchHHHHHHHhh----cCccchhccccHHHHHHHhc
Confidence            55667889999999999999999999999996    99999999999999999985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
3bsu_A	53	Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid	3e-04

>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens} Length = 53

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 83  GKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLASHG 138
           G   F+ VR+G   GV+ ++ EC+AQ    +   P + +K  A       ++    
Sbjct: 1   GSHMFYAVRRGRKTGVFLTWNECRAQ----VDRFPAARFKKFATEDEAWAFVRKSA 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3bsu_A	53	Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid	99.88
1qhk_A	47	RNAse HI, protein (ribonuclease HI); ribonuclease	99.87

>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}

Probab=99.88  E-value=3.3e-23  Score=138.18  Aligned_cols=49  Identities=27%  Similarity=0.530  Sum_probs=46.3

Q ss_pred             CCeeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHHHHh
Q 039232           84 KDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLAS  136 (165)
Q Consensus        84 kdKfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeeyL~s  136 (165)
                      .+|||||++|+++|||+||+|||+||.|    ||+|+||+|.|.+||++||.+
T Consensus         2 ~~kyYaV~~G~~~GIy~sW~ec~~qV~g----~~ga~yK~F~t~~eA~~~l~~   50 (53)
T 3bsu_A            2 SHMFYAVRRGRKTGVFLTWNECRAQVDR----FPAARFKKFATEDEAWAFVRK   50 (53)
T ss_dssp             -CCEEEEEESSSCEEESSHHHHHHHHTT----CTTCEEEEESSHHHHHHHHHC
T ss_pred             CCCEEEEEeCCCCceECCHHHHHHHhcC----CCCCccCCCCCHHHHHHHHHh
Confidence            4689999999999999999999999995    999999999999999999975

>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2

Probab=99.87  E-value=4.7e-23  Score=134.62  Aligned_cols=46  Identities=28%  Similarity=0.598  Sum_probs=44.5

Q ss_pred             eeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHHHH
Q 039232           86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLA  135 (165)
Q Consensus        86 KfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeeyL~  135 (165)
                      |||||++|+++|||+||+|||+||.|    ||||+||+|.|.+||++||.
T Consensus         2 kyYaV~~G~~~GIy~sW~ec~~qV~g----~~ga~yK~F~t~~eA~~~l~   47 (47)
T 1qhk_A            2 NFYAVRKGRETGIYNTWNECKNQVDG----YGGAIYKKFNSYEQAKSFLG   47 (47)
T ss_dssp             EEEEECSSSSCEEEEEHHHHHHHSSS----CSSCCCEEESCHHHHHHHHC
T ss_pred             CEEEEEeCCCCceECCHHHHHHHhcC----CCCCccCCCCCHHHHHHHhC
Confidence            79999999999999999999999995    99999999999999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1qhka_	47	d.100.1.2 (A:) N-terminal domain of RNase HI {Bake	7e-05

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 83  GKDEFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYL 134
           G   F+ VRKG   G+Y ++ EC+ Q    +     ++YK     +  + +L
Sbjct: 1   GN--FYAVRKGRETGIYNTWNECKNQ----VDGYGGAIYKKFNSYEQAKSFL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1qhka_	47	N-terminal domain of RNase HI {Baker's yeast (Sacc	99.84

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.4e-22  Score=128.62  Aligned_cols=46  Identities=28%  Similarity=0.598  Sum_probs=44.5

Q ss_pred             eeEEEEeCceeeeeeChHHHHHHhcCcCCCCCcceeccCCChhhHHHHHH
Q 039232           86 EFFVVRKGDLVGVYKSFTECQAQLGSSICHPPVSVYKGNALPKGTEEYLA  135 (165)
Q Consensus        86 KfYAVRKGr~~GIYktWsDCQaQV~gsv~g~pgAvYKgF~t~kEAeeyL~  135 (165)
                      |||||++|+++|||+||+|||+||.|    +|+|+||+|.|.+||++||.
T Consensus         2 kyYaV~~G~~~GIy~~W~e~~~~V~g----~~ga~~k~F~t~~eA~~~lg   47 (47)
T d1qhka_           2 NFYAVRKGRETGIYNTWNECKNQVDG----YGGAIYKKFNSYEQAKSFLG   47 (47)
T ss_dssp             EEEEECSSSSCEEEEEHHHHHHHSSS----CSSCCCEEESCHHHHHHHHC
T ss_pred             CeEEEEECCCCCccCCHHHHHHHhcC----CCCCeECCcCCHHHHHHhhC
Confidence            79999999999999999999999996    99999999999999999983