Citrus Sinensis ID: 039312
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E8X3 | 559 | Probable peptide/nitrate | yes | no | 0.899 | 0.932 | 0.576 | 0.0 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.908 | 0.848 | 0.423 | 1e-134 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.872 | 0.876 | 0.427 | 1e-119 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.949 | 0.892 | 0.364 | 1e-114 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.903 | 0.890 | 0.366 | 1e-107 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.868 | 0.790 | 0.376 | 1e-106 | |
| Q9M817 | 607 | Probable peptide transpor | no | no | 0.903 | 0.861 | 0.363 | 1e-103 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.856 | 0.893 | 0.388 | 2e-96 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.898 | 0.879 | 0.346 | 1e-91 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.865 | 0.878 | 0.345 | 4e-90 |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/560 (57%), Positives = 409/560 (73%), Gaps = 39/560 (6%)
Query: 4 NIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL 63
++ SSS S+ K+ GGWRAIKYI+ NE+FEKLASMSLI N++VYL YNLGGV
Sbjct: 2 DVESSSPSS--HALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVF 59
Query: 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123
LVN++ IW GS NI +L GAFVSDAYLGRF TLL+GSIAS +GM + LTA + LRP +
Sbjct: 60 LVNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDA 119
Query: 124 CGDPPHCP-QPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
C DP +C QP WQ VLF+ L LL+IGAGG+RPCNIAFGADQFDT+T+KG+A LE+FF
Sbjct: 120 CIDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFF 179
Query: 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NWWYFSFTVALV+ LTGVVYIQTN+SWV+GF IPTACLA SIT F++G+ YI K GS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGS 239
Query: 243 VFSDMAKVVVAACRKRCFSVEPGCEHNYY-------DPPLMIKLKRTNRFKCLDRAALIT 295
VF+D+ KVV AAC+KR V+PG + +Y P +++ K RF D+A+++T
Sbjct: 240 VFADIVKVVTAACKKR--KVKPGSDITFYIGPSNDGSPTTLVRDKHRLRF--FDKASIVT 295
Query: 296 EPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ 355
P +EL E G K WRLCS+QQV+ LKC+ AILPV V+GIACFI DQQN +GILQA+Q
Sbjct: 296 NP-NELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQ 354
Query: 356 MNKSVGPH-FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGI 414
M+K+ GPH F++P WMN+ SM+ L++WI +YE + IP+ +I G+ KRLTL+ RI+ I
Sbjct: 355 MDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIE--I 412
Query: 415 VMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTN 474
VM I+CM+VAG EK+RR ALK+ SFVSP+S++ LLPQ+AL+GLTEAF+AVA+MEF T
Sbjct: 413 VMGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTV 472
Query: 475 QMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWLG-------------- 520
+MPE MR VAGA FFLS S+ASY+ +L+IN+I VT++ G S WLG
Sbjct: 473 RMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFF 531
Query: 521 ------AVNFVYFSFFASHF 534
N +YF FAS +
Sbjct: 532 IIAGIQVANLLYFRLFASRY 551
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/557 (42%), Positives = 354/557 (63%), Gaps = 31/557 (5%)
Query: 7 SSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVN 66
SS S ++ + KKPGGWRA+ +ILGNET E+L S+ L++N VYL ++L V N
Sbjct: 37 SSPGSILDAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAAN 96
Query: 67 IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG- 125
++ IWSG N+T L+GA++SD Y+GRF+T+ S A+LLG++ +TLTA QL P+SC
Sbjct: 97 VINIWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNS 156
Query: 126 -DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184
DP C P Q VL L LS+G+GGIRPC+I FG DQFD TE+G + SFFNW
Sbjct: 157 QDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNW 216
Query: 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVF 244
+Y +FTV L++ T VVYIQ VSW++GF+IPT +A ++ +F G + Y+Y+KP GS+F
Sbjct: 217 YYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIF 276
Query: 245 SDMAKVVVAACRKRCFSV--EPGCEHNYYDPPL----MIKLKRTNRFKCLDRAALITEPS 298
S +A+V+VAA +KR + E YYDP + + KL R+N+F+CLD+AA++ E
Sbjct: 277 SGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIE-- 334
Query: 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNK 358
+L +G P + WRLCS+Q+VE++KCLI I+P+ +GI +M Q TF + QA++M++
Sbjct: 335 GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDR 394
Query: 359 SVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418
++GP F++P +++ S+L + +++ Y+R+++P +I G +TL QRI TGIV +I
Sbjct: 395 NLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAI 454
Query: 419 LCMLVAGSVEKRRRELALK--HDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQM 476
M+VAG VE+ RR ++ + ++PMS+ L PQ L GL EAF + +EFF +Q
Sbjct: 455 FSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQF 514
Query: 477 PESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPW------------------ 518
PE MR++A + F LS + +SY+SS ++ ++H+ + W
Sbjct: 515 PEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIA 574
Query: 519 -LGAVNFVYFSFFASHF 534
LG VN VYF + A +
Sbjct: 575 VLGVVNLVYFWYCARGY 591
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/543 (42%), Positives = 340/543 (62%), Gaps = 38/543 (6%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITS 79
KK GGWRAI +ILGNET EKL S+ + +N +YL+N +++ V N+ +W G N
Sbjct: 13 KKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAP 72
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQL--RPSSCGDPPHCPQPQGWQ 137
LLGA +SDAY+GRF+T+ S+ S+LG++ +TLTA + QL P + P C P Q
Sbjct: 73 LLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQ 132
Query: 138 FCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL 197
+LF L LSIG+GGIRPC+I FG DQFD TE+G + SFFNW+Y + T+ L+
Sbjct: 133 LGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSH 192
Query: 198 TGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRK 257
T VVY+QT VSWV+GF+IPT+ +A ++ LF +G R Y+Y+KP GSVFS +A+V+VAA +K
Sbjct: 193 TVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKK 251
Query: 258 RCFS---VEPGCEHNYYDPP----LMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNG 310
R V+ G E YY+PP ++ KL T++FK LD+AA+I + +L +G P N
Sbjct: 252 RDLKISLVDDGTE-EYYEPPVKPGVLSKLPLTDQFKFLDKAAVILD--GDLTSEGVPANK 308
Query: 311 WRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAW 370
WRLCS+Q+VE++KCLI ++PV +GI ++M Q TF + QA +M++ +GPHF++P A
Sbjct: 309 WRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAAS 368
Query: 371 MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR 430
+ + S + + +W+ IYE L +P ++ + R+TL QR+ GIV +IL M AG VE
Sbjct: 369 ITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSMFTAGFVEGV 426
Query: 431 RRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFL 490
RR A + ++ MS+ L L GL E+F + ++EFF +Q PE MR++A + F L
Sbjct: 427 RRTRATE----MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLFPL 482
Query: 491 SLSVASYVSSLVINIIHRVTKRTGNSPW-------------------LGAVNFVYFSFFA 531
S + A+Y+SSL++ +H+V+ + W LG VN VYF + A
Sbjct: 483 SFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCA 542
Query: 532 SHF 534
+
Sbjct: 543 HRY 545
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/593 (36%), Positives = 345/593 (58%), Gaps = 43/593 (7%)
Query: 8 SSASTVEQDPSAKKP---GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLL 64
++ +VE+D +K GW+ + +I+GNETFEKL + +SN+ VYL +NL +
Sbjct: 27 TAVDSVEEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITA 86
Query: 65 VNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC 124
I+ +SG+ N + + AF+ D Y GR++TL V IA LG ++ LTA + QL P++C
Sbjct: 87 ATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAAC 146
Query: 125 GDPPH--CPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
G C P G Q L L L +GAGGIRPCN+AFGADQF+ +E G+ ++SFF
Sbjct: 147 GTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFF 206
Query: 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NW++F+FT A ++ LT VVY+Q+NVSW +G IP + + +F G + Y+ IK +GS
Sbjct: 207 NWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGS 266
Query: 243 VFSDMAKVVVAACRKRCFSVEPGCE-----HNYYDPPLM-IKLKRTNRFKCLDRAALITE 296
+ +A+V+ A +KR ++P + +NYY P KLK T++F+ LD+AA++T
Sbjct: 267 PLAGIAQVIAVAIKKR--GLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT- 323
Query: 297 PSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQM 356
P +LQ G P + W+LC++QQVE++KC++ +LP+ + ++++ QQ T+ + QA+Q
Sbjct: 324 PEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQS 383
Query: 357 NKSVGP-HFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIV 415
++ +G F +P A + M ++++I++Y+R+ +P +I G +TL QRI TGI
Sbjct: 384 DRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIF 443
Query: 416 MSILCMLVAGSVEKRRRELALKHDSF--------VSPMSLLTLLPQYALSGLTEAFAAVA 467
+ ++VAG VE+RRR AL + +S MS + L+PQ +L+G+ EAFAA+
Sbjct: 444 FATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIG 503
Query: 468 IMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWLG------- 520
MEF+ Q PE+MR+ AG+ F++ V+SY+ S +I +HR T+ + WL
Sbjct: 504 QMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGR 563
Query: 521 ------------AVNFVYFSFFASHFVVNTTVAETGVKDVQLENVVAGNSANL 561
AVNF YF + + + E + EN++ N+
Sbjct: 564 LDLFYFMIAGILAVNFAYFLVMSRWYRYKGSDDEVTTYETN-ENIIKQQDKNV 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/543 (36%), Positives = 319/543 (58%), Gaps = 20/543 (3%)
Query: 4 NIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL 63
+ + + E D S GW+ + +I+GNETFEKL + SN+ +YL +N+ +
Sbjct: 2 EVEKTEKNIAEDDESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSIT 61
Query: 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123
+V I+ G++N +++ AF+ D+Y GR++TL IA LG + M LTA IH L P+
Sbjct: 62 AAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQ 121
Query: 124 CGDP--PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181
C C P Q L A+ LL IGAGGIRPCN+ FGADQFD T++G+ +ESF
Sbjct: 122 CAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESF 181
Query: 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAG 241
FNW++F+FT A +V LT +VY+Q+NVSW +G AIP + +F G + Y+ +K +G
Sbjct: 182 FNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASG 241
Query: 242 SVFSDMAKVVVAACRKRCFS-VEPGCEHNYYDPPLM-IKLKRTNRFKCLDRAALITEPSH 299
S + +V+V A +KR V P +NY KL T +F+ LD++A+ T+
Sbjct: 242 SPIHSITRVIVVAIKKRRLKPVGPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQ-DD 300
Query: 300 ELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKS 359
+L + G+P + W+LCS+QQVE++KC+I +LPV +S +++ QQ T+ I Q++Q ++
Sbjct: 301 KLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRR 360
Query: 360 VGP-HFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418
+GP F++P + ML ++++I IY+R+ +P K G+ +T QR+ G+ + I
Sbjct: 361 LGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCI 420
Query: 419 LCMLVAGSVEKRRRELALKHDSF--------VSPMSLLTLLPQYALSGLTEAFAAVAIME 470
M+V+ VE+ RR++AL + +S MS + L+PQ L G+ +A A V ME
Sbjct: 421 TSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQME 480
Query: 471 FFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL------GAVNF 524
F+ Q PE+MR+ AG+ ++ + +ASY+S+ +++ +H T+ WL G + +
Sbjct: 481 FYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEY 540
Query: 525 VYF 527
YF
Sbjct: 541 FYF 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 316/523 (60%), Gaps = 20/523 (3%)
Query: 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGA 83
GW+ + +I+GNETFEKL + +SN+ VYL + +NL I+ +SG+ N + + A
Sbjct: 64 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAA 123
Query: 84 FVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFA 143
F+ D Y GR++TL V IA LG ++ LTA I L P +CG+ C P Q L
Sbjct: 124 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKISCEGPSVGQILFLLM 183
Query: 144 ALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI 203
L L +GAGGIRPCN+AFGADQF+ +E G+ + SFFNW++F+FT A ++ LT VVYI
Sbjct: 184 GLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYI 243
Query: 204 QTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVE 263
Q+NVSW +G IP A + + +F G R Y+ +K +GS + +A+V+ AA +KR
Sbjct: 244 QSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPV 303
Query: 264 PGCEHNYYD--PP--LMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQV 319
N Y+ P LK T++F+ LD+AA++T P +L GT + W+LC+LQQV
Sbjct: 304 KQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMT-PEEKLNSDGTASDPWKLCTLQQV 362
Query: 320 EQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGP-HFKMPPAWMNITSMLA 378
E++KC++ ++P+ + ++++ Q T+ + QA+Q ++ +G F++P A + M
Sbjct: 363 EEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTG 422
Query: 379 LSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKH 438
++++I+ Y+R+ +P ++ G ++L QRI G +I+ +LV+G +E+RRR AL
Sbjct: 423 MTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTK 482
Query: 439 DSF--------VSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFL 490
+ +S MS L L+PQ L+G+ EAFAA+ MEF+ Q PE+M++ AG+ F++
Sbjct: 483 PTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYV 542
Query: 491 SLSVASYVSSLVINIIHRVTKRTGNSPWL------GAVNFVYF 527
V+SY++S +I+ +HR T + + WL +++ YF
Sbjct: 543 GAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYF 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/550 (36%), Positives = 327/550 (59%), Gaps = 27/550 (4%)
Query: 1 MANNIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLG 60
M N + + A ++ + K GG + +I+ NE FEK+AS L+ N+ +YL +Y G
Sbjct: 1 MENPPNETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFG 60
Query: 61 GVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLR 120
N++ +WS ++N T LLGAF+SD+YLGRF T+ + S++S LGM+++ LTA + Q++
Sbjct: 61 VAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVK 120
Query: 121 PSSCGDP----PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGR 175
PS C DP HC Q +L++A L+SIG+GGIRPC++AFGADQ D K
Sbjct: 121 PSPC-DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNE 179
Query: 176 AQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYI 235
LESFF W+Y S VA+++ TG+VYIQ ++ W +GF +P + + LF+L Y+
Sbjct: 180 RVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYV 239
Query: 236 YIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKR----TNRFKCLDRA 291
S+F+ +A+ +VAA +KR S+ H+ +D +K + + + L++A
Sbjct: 240 TRGVTKSLFTGLAQAIVAAYKKRKLSLPD--HHDSFDCYYHMKDSEIKAPSQKLRFLNKA 297
Query: 292 ALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGIL 351
LI+ E+ G N WRLC+ +VE+LK LI ++P+ +GI I+ Q++F +L
Sbjct: 298 CLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSIN-TSQSSFQLL 356
Query: 352 QAIQMNKSVGPH---FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQ 408
QA M++ + H F++P + +++AL+LW+++Y+R IP+A+KI G+ RL+++
Sbjct: 357 QATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKL 416
Query: 409 RIKTGIVMSILCMLVAGSVEKRRRELAL-----KHDSFVSPMSLLTLLPQYALSGLTEAF 463
R+ G+ MS L M ++ VE RR+ A+ + + V +S + L+PQY L GL EA
Sbjct: 417 RMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEAL 476
Query: 464 AAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL---- 519
A+ EFF + P+SM ++A + F L ++VAS ++S+V+N ++ +T R G W+
Sbjct: 477 TAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNI 536
Query: 520 --GAVNFVYF 527
G N+ Y+
Sbjct: 537 NKGHYNYYYW 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/522 (38%), Positives = 317/522 (60%), Gaps = 26/522 (4%)
Query: 7 SSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVN 66
SSS T Q +KP GW+A+ YI+GNET E+LA+ L++N VY+ Y++ V V
Sbjct: 8 SSSDLTTRQ----RKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVT 63
Query: 67 IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126
++ WS N ++GAF+SD+Y G+F T++ GSIA LLGML++T T+ + LRP C
Sbjct: 64 LINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTA 123
Query: 127 PPHCPQ--PQGW-QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183
Q P + Q VL + L LLS+G GGIR C++ F DQFD +TE+GR SFF+
Sbjct: 124 DQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSFFS 183
Query: 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSV 243
W+Y + T+ +V +T V+Y+Q N+SW +GFAIPT F++ L +G R Y+++KP GSV
Sbjct: 184 WYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSV 243
Query: 244 FSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKR-----TNRFKCLDRAALITEPS 298
FS + KV+VAA +KR G + Y+ P L L+ T++F+ L++A ++
Sbjct: 244 FSGVFKVLVAAYKKRKARFTSGID--YHQPLLETDLQSNKLVLTDQFRFLNKAVIVMNND 301
Query: 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNK 358
E+ WR C+++Q+E +K +I+I+P+ S I F++M+QQ TF + QA++M+
Sbjct: 302 EAGNEE------WRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDL 355
Query: 359 SV-GPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417
G + +PPA + + S+L + +W+ YE + + I + ++L Q++ G + S
Sbjct: 356 QFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNIFS 415
Query: 418 ILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP 477
I ML++G VE++RR+L+L MS+ L PQ L G + F V + EFF Q+P
Sbjct: 416 ISTMLISGIVERKRRDLSLNG----VKMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVP 471
Query: 478 ESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL 519
+MR++ + +L LS+ASY+SS +++I+H VT R G S WL
Sbjct: 472 INMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS-WL 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/542 (34%), Positives = 323/542 (59%), Gaps = 22/542 (4%)
Query: 6 HSSSASTVEQDPSAKK-PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLL 64
+ S T++Q + ++ GG + +I+ NE FEK+AS L+ N+ +YL ++Y LG V
Sbjct: 7 QTESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66
Query: 65 VNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC 124
++ +W + N L+GAF+SD+YLGRF T+++ S++SLLGM+++ LTA + Q++PS C
Sbjct: 67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126
Query: 125 --GDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGRAQLESF 181
+C Q +L+ A L+SIG+GGIRPC++AFGADQ D K LESF
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186
Query: 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAG 241
F W+Y S +VA+++ T +VYIQ ++ W +GF IP + + LF+ Y+ +
Sbjct: 187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246
Query: 242 SVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKR----TNRFKCLDRAALITEP 297
S+F+ +A+VV AA KR ++ H+ D +K +++ + L++A I+
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLPD--HHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNR 304
Query: 298 SHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMN 357
+L G N WRLC+ QVE+LK L+ ++PV +GI I++ QN+F +LQA M+
Sbjct: 305 DEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINV-SQNSFQLLQAKSMD 363
Query: 358 KSVGPH--FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIV 415
+ + + F++P + +++AL W+++Y+R +P+A+KI G+ R+ ++ R+ G+
Sbjct: 364 RRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLF 423
Query: 416 MSILCMLVAGSVEKRRRELALKH------DSFVSPMSLLTLLPQYALSGLTEAFAAVAIM 469
+S L M V+ +VE RR+ A+ +S VS +S + L+PQY L GL EA +
Sbjct: 424 ISFLAMAVSATVEHYRRKTAISQGLANDANSTVS-ISAMWLVPQYVLHGLAEALTGIGQT 482
Query: 470 EFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL-GAVNFVYFS 528
EFF + P+SM ++A + F L ++VA+ ++S+++N + +K+ GN W+ +N ++
Sbjct: 483 EFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWIEDNINKGHYD 541
Query: 529 FF 530
++
Sbjct: 542 YY 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 179/518 (34%), Positives = 292/518 (56%), Gaps = 17/518 (3%)
Query: 13 VEQDPSAK-KPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIW 71
+ ++P+ K K G W+A ++ILGNE E+LA + +N+ YL++ N G N VT W
Sbjct: 15 IHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNW 74
Query: 72 SGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC-GDPPHC 130
SG+ IT L+GAF++DAYLGR+ T+ + GM ++TL+A + L+P +C D H
Sbjct: 75 SGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCH- 133
Query: 131 PQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190
P Q V F AL ++++G GGI+PC +FGADQFD E + + SFFNW+YFS
Sbjct: 134 --PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSIN 191
Query: 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKV 250
V ++ T +V+IQ NV W GF +PT + ++ F G R Y +P GS + + +V
Sbjct: 192 VGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251
Query: 251 VVAACRKRCFSV--EPGCEHNYYDPPLMIKLKR----TNRFKCLDRAALITEPSHELQEQ 304
+VAA RK V + D IK R T+ K D+AA+ ++ +
Sbjct: 252 IVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGE 311
Query: 305 GTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHF 364
P WRLCS+ QVE+LK +I +LPV +GI Q +T +LQ M++ +G +F
Sbjct: 312 VNP---WRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368
Query: 365 KMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVA 424
++P A +++ +++ W +Y++ IP+A K + T QR+ G+V+SI M+ A
Sbjct: 369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428
Query: 425 GSVEKRRRELALKHDSFVSP---MSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMR 481
G +E R + H+++ MS+ +PQY L G E F + +EFF +Q P++MR
Sbjct: 429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488
Query: 482 TVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL 519
++ A ++++ +Y+S++++ ++ ++TK+ G W+
Sbjct: 489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI 526
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| 255540891 | 609 | nitrate transporter, putative [Ricinus c | 0.960 | 0.912 | 0.630 | 0.0 | |
| 357477393 | 607 | Peptide transporter PTR1 [Medicago trunc | 0.960 | 0.915 | 0.605 | 0.0 | |
| 449469667 | 582 | PREDICTED: probable peptide/nitrate tran | 0.886 | 0.881 | 0.598 | 0.0 | |
| 224087523 | 585 | predicted protein [Populus trichocarpa] | 0.882 | 0.873 | 0.588 | 0.0 | |
| 224138890 | 592 | predicted protein [Populus trichocarpa] | 0.896 | 0.876 | 0.599 | 0.0 | |
| 356565067 | 597 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.955 | 0.926 | 0.567 | 0.0 | |
| 297808857 | 561 | predicted protein [Arabidopsis lyrata su | 0.908 | 0.937 | 0.575 | 0.0 | |
| 145358511 | 559 | major facilitator protein [Arabidopsis t | 0.899 | 0.932 | 0.576 | 1e-180 | |
| 359491348 | 581 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.860 | 0.857 | 0.612 | 1e-172 | |
| 356566575 | 582 | PREDICTED: probable peptide/nitrate tran | 0.946 | 0.941 | 0.515 | 1e-170 |
| >gi|255540891|ref|XP_002511510.1| nitrate transporter, putative [Ricinus communis] gi|223550625|gb|EEF52112.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/584 (63%), Positives = 448/584 (76%), Gaps = 28/584 (4%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITS 79
+K GGW AIKYILGNE+FEKLASMSLI+NITVYLQ YN+ GV V + T+WSGS+NITS
Sbjct: 28 RKVGGWNAIKYILGNESFEKLASMSLIANITVYLQTRYNMEGVFNVTVTTVWSGSSNITS 87
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFC 139
L+GA ++D YLGRFRTL GSI SLLGM MTLTAG+ +L P C CPQ + WQ
Sbjct: 88 LMGAIIADTYLGRFRTLFFGSIFSLLGMTGMTLTAGLPKLTPPRCNGDTSCPQAEKWQLG 147
Query: 140 VLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199
LFA+L LSIG+GGIRPCNIAFGADQFDTTT KGR+QLESFFNWWYF FT+ALVV LT
Sbjct: 148 FLFASLGFLSIGSGGIRPCNIAFGADQFDTTTAKGRSQLESFFNWWYFFFTIALVVALTA 207
Query: 200 VVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRC 259
VVYIQTNVSWV+GF IPT+CL SI++FL+GR YI KP GS+F++M KVV+AACRKR
Sbjct: 208 VVYIQTNVSWVIGFIIPTSCLFLSISIFLIGRSTYICKKPRGSIFTNMIKVVIAACRKRQ 267
Query: 260 FSVEPGCEHNYYDPP-----LMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLC 314
+ +P ++++YDPP L +K+ T+RF+ LD+AA+I++ S EL +QG KN WRLC
Sbjct: 268 LTTKPDSQYSFYDPPMDESELHLKIAHTDRFRFLDKAAMISDLS-ELDDQGLAKNTWRLC 326
Query: 315 SLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNIT 374
SLQQVEQLKCLIAI PV VSGIACFI MDQQN FGILQAIQ+NKSVGP F++PP WM +T
Sbjct: 327 SLQQVEQLKCLIAIGPVWVSGIACFIPMDQQNAFGILQAIQINKSVGPKFQVPPGWMGLT 386
Query: 375 SMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRREL 434
SM+ALS+WI IYER+Y+P A K+AGK KRLT+ QRIKTGIVMSILCMLVAG VEK+RRE
Sbjct: 387 SMIALSIWIYIYERIYVPKAKKLAGKDKRLTMPQRIKTGIVMSILCMLVAGFVEKKRRES 446
Query: 435 ALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSV 494
AL++ +F SP+++ LLPQ+ LSGL EAFAAVAIMEF+T MPESMRTVAGA FFLSLS+
Sbjct: 447 ALRNGTFASPITIAALLPQFVLSGLIEAFAAVAIMEFYTTGMPESMRTVAGAVFFLSLSI 506
Query: 495 ASYVSSLVINIIHRVTKRTGNSPWLGA--------------------VNFVYFSFFASHF 534
+SY+SSL+INIIH V+ + G +PWLG VNF+YF+F+AS +
Sbjct: 507 SSYISSLLINIIHHVSGKNGKTPWLGGHDLNQNRLDYYYFIIAGLAVVNFIYFNFYASRY 566
Query: 535 VVNTTVAETGVKDVQLENVVAGNSANLPRRESIDEEKGLERPDT 578
V+ G +V++EN +S+ P+ DEEKG + D+
Sbjct: 567 AVSHHY--DGSTEVKVENSNFHHSSIRPKDIMQDEEKGSDLHDS 608
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477393|ref|XP_003608982.1| Peptide transporter PTR1 [Medicago truncatula] gi|355510037|gb|AES91179.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/590 (60%), Positives = 440/590 (74%), Gaps = 34/590 (5%)
Query: 15 QDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGS 74
+ S+++ GGWR++KYI+GNE+FEKLASMSLISN+TVYL NYN+ G+ +VN+V IW+GS
Sbjct: 25 NEASSREAGGWRSVKYIIGNESFEKLASMSLISNLTVYLLTNYNMSGIFVVNVVQIWNGS 84
Query: 75 NNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC--GDPPHCPQ 132
+NI SL+GAF+SD YLGRFRTLL G IASLLG++ +TLTAG+HQLRP +C D P+C
Sbjct: 85 SNIASLVGAFISDTYLGRFRTLLYGCIASLLGIMTITLTAGLHQLRPITCDDNDRPNCQH 144
Query: 133 PQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVA 192
P+ WQ VLF L LLSIGAGGIRPCNIAFGADQFDT T KGR QLESFFNWWYF+FT+A
Sbjct: 145 PKDWQLGVLFTGLGLLSIGAGGIRPCNIAFGADQFDTNTAKGRGQLESFFNWWYFTFTIA 204
Query: 193 LVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVV 252
LV+VLTGVVYIQTNVSW LGFAIPT CLAFSI +FL GR YIY KP GSVF+DMAKV+V
Sbjct: 205 LVIVLTGVVYIQTNVSWTLGFAIPTVCLAFSIIIFLFGRGTYIYKKPQGSVFTDMAKVIV 264
Query: 253 AACRKRCFSVEPGCEHNY---YDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKN 309
AACRKR + +++ I+L +T+RFK LD+AA+I EPS EL QG KN
Sbjct: 265 AACRKRKLQLSNRTLYDHVSTLSESENIRLVQTDRFKFLDKAAIIAEPS-ELNNQGIAKN 323
Query: 310 GWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPA 369
GWRLCSLQQVE LKCL ILPV V+GI CFI MDQQ+TFG+LQ IQ ++S+G HFK+PP
Sbjct: 324 GWRLCSLQQVEHLKCLFGILPVWVTGICCFIVMDQQSTFGVLQVIQTDRSIGSHFKVPPG 383
Query: 370 WMNITSMLALSLWILIYERLYIPVATKIAGK-VKRLTLQQRIKTGIVMSILCMLVAGSVE 428
WMN+ SM +LS WI IYE +Y+P+ I + +R+++ RI+ GI++SILCMLVA VE
Sbjct: 384 WMNLISMTSLSFWICIYECIYLPIMRIINKRATRRMSMGCRIRIGILLSILCMLVAAVVE 443
Query: 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAF 488
K+RR+ ALKH+SF+SP+S LLPQ+ALSGL EAFAAVAIMEFFT Q+PESMRTV+GA F
Sbjct: 444 KKRRDSALKHNSFISPVSFGLLLPQFALSGLNEAFAAVAIMEFFTLQVPESMRTVSGAIF 503
Query: 489 FLSLSVASYVSSLVINIIHRVTKRTGNSPWLGA--------------------VNFVYFS 528
FLSLS+A+Y SL++NI+H+ T G +PWLG +NF+YF+
Sbjct: 504 FLSLSIANYTGSLIVNIVHKATSHKGKTPWLGGQDLNHTRLDYYYYLIASIGVLNFIYFN 563
Query: 529 FFASHFVVNTTVAETGVKDVQLENVVAGNSANLPRRESIDEEKGLERPDT 578
FFA H++++ E +VQ V G S E DEEK L+R T
Sbjct: 564 FFACHYLISGKEIEKA--EVQPIASVKGES-----DEQDDEEKVLDRVGT 606
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469667|ref|XP_004152540.1| PREDICTED: probable peptide/nitrate transporter At5g28470-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/543 (59%), Positives = 400/543 (73%), Gaps = 30/543 (5%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITS 79
+K GGWRA+KYI+GNE+FEKL+SMSLISNITVYL YN+ G +VN+V IW G++NI +
Sbjct: 18 QKLGGWRAVKYIIGNESFEKLSSMSLISNITVYLSTQYNVNGTFVVNVVNIWIGTSNIAT 77
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG--DPPHCPQPQGWQ 137
L GAF++D LGR+RTLL GSIAS LGM + LTA +HQLRP C D HCPQP WQ
Sbjct: 78 LAGAFIADTRLGRYRTLLYGSIASFLGMGTVALTAALHQLRPPHCNADDSGHCPQPHLWQ 137
Query: 138 FCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL 197
VLF L LLSIGAGGIRPCN+AFGADQFDTTTEKG++QLESFFNWWY SFT+AL++ L
Sbjct: 138 LLVLFTGLGLLSIGAGGIRPCNVAFGADQFDTTTEKGKSQLESFFNWWYLSFTIALLIAL 197
Query: 198 TGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRK 257
TGVVY+QTNVSW LGFAIPT C SI++FLLGR YI +KP GS+ +D+A+V+VAA RK
Sbjct: 198 TGVVYVQTNVSWTLGFAIPTICFFISISIFLLGRHTYIIVKPRGSMLTDVARVIVAAYRK 257
Query: 258 RCFSVEPGCEHNYYDPPLMI-----KLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWR 312
R S+ ++YD P+ KL T+RFK LDRAA+I P EL EQG PKN WR
Sbjct: 258 RGHSIS---SSSFYDSPMEDSTCGEKLIHTDRFKWLDRAAIIVNPEEELDEQGKPKNSWR 314
Query: 313 LCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMN 372
LCSLQQVE KCL++I+PV +SGI CFI +Q NTFGILQAIQ N+S+GPHFK PP WM+
Sbjct: 315 LCSLQQVEGFKCLVSIIPVWISGIGCFIVFNQPNTFGILQAIQSNRSIGPHFKFPPGWMS 374
Query: 373 ITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRR 432
+ M+ALS+WI+IYER+ I + KI GK +RLT++QRI GI++SI M+ +G VEK RR
Sbjct: 375 LAGMIALSIWIIIYERVLIKLGKKITGKERRLTMEQRITIGILLSIFSMITSGVVEKHRR 434
Query: 433 ELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSL 492
+ ALK+ F+SP S LLPQ+ L+GL EAFA VAIMEFFT MPE MRTVAGA FFL++
Sbjct: 435 DAALKNRLFISPTSFALLLPQHVLTGLMEAFALVAIMEFFTMHMPEHMRTVAGAIFFLTI 494
Query: 493 SVASYVSSLVINIIHRVTKRTGNSPWLGA--------------------VNFVYFSFFAS 532
SVASY+SSL++ +I +V+ + SPW+G +N +YF FA
Sbjct: 495 SVASYLSSLIVYVIKKVSAKIAKSPWVGGHDLNQNRLDYYYFTLAVLETLNLLYFVIFAR 554
Query: 533 HFV 535
FV
Sbjct: 555 RFV 557
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087523|ref|XP_002308184.1| predicted protein [Populus trichocarpa] gi|222854160|gb|EEE91707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/540 (58%), Positives = 404/540 (74%), Gaps = 29/540 (5%)
Query: 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLG 82
GGWR++KYILGNE+FEKLASM LI+N+TVYLQ YN+ G+ LVN+ IWSGS N+T LLG
Sbjct: 37 GGWRSVKYILGNESFEKLASMGLIANLTVYLQTRYNMDGIQLVNVYNIWSGSTNVTPLLG 96
Query: 83 AFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLF 142
AF+SDAYLGRFRTLL GS++S LGM+++ LTAG+ +LRP C +C +PQ WQ VL+
Sbjct: 97 AFLSDAYLGRFRTLLFGSMSSFLGMVVLALTAGMPKLRPLDCPGVSNCQKPQDWQLGVLY 156
Query: 143 AALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVY 202
+ L LL++GAGG+RPCNIAFGADQFDT TEKGRAQLESFFNWWYFSFTVALV+ LT VVY
Sbjct: 157 SGLGLLAVGAGGVRPCNIAFGADQFDTRTEKGRAQLESFFNWWYFSFTVALVIALTAVVY 216
Query: 203 IQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262
+QTNVSWV+G+AI ACL SI +FL+G+ YI K G+VF D+AKV+VAA +KR S+
Sbjct: 217 VQTNVSWVIGYAITAACLFSSIIIFLIGKHTYIITKSQGTVFVDIAKVIVAARKKRAVSL 276
Query: 263 EPGCEHNYYDPPL------MIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSL 316
E H YDPPL + KL T+ FK D+AALIT+PS EL ++G PKN WRLCS+
Sbjct: 277 ESSSGHPLYDPPLTESDQRVAKLAHTDMFKFFDKAALITDPS-ELDDKGLPKNSWRLCSV 335
Query: 317 QQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSM 376
QQVEQLK ++ ++PV +GI CFI+MDQ NTFG++QAIQ N V +FK+PP WM + SM
Sbjct: 336 QQVEQLKLIVGLVPVWFTGIGCFITMDQMNTFGLMQAIQSNNEV-HNFKIPPGWMGLISM 394
Query: 377 LALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELAL 436
+ LS+WI IYE++Y+P A K + K R T + RI TGIVM+ILCM+VA VEK RR+ AL
Sbjct: 395 ICLSIWIFIYEQIYLPQARKRSKKNIRFTTRHRINTGIVMAILCMVVAAIVEKSRRDAAL 454
Query: 437 KHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVAS 496
K + VSP S+L LLPQ+ALSGL EAFAAVAIME++TN +PE+MRT++GA FFLS S +S
Sbjct: 455 KQGTLVSPQSILLLLPQFALSGLNEAFAAVAIMEYYTNHLPETMRTLSGAIFFLSFSASS 514
Query: 497 YVSSLVINIIHRVTKRTGN-SPWLG--------------------AVNFVYFSFFASHFV 535
Y+++ +IN++H VT G SPWLG A+N +YF+ F+ ++
Sbjct: 515 YLNTAIINLVHLVTSNNGKESPWLGGRDLNKVKLDYFYYLIASLAALNLLYFNLFSCRYL 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138890|ref|XP_002322927.1| predicted protein [Populus trichocarpa] gi|222867557|gb|EEF04688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/537 (59%), Positives = 412/537 (76%), Gaps = 18/537 (3%)
Query: 1 MANNIHSSSASTVEQD----------PSAKKPGGWRAIKYILGNETFEKLASMSLISNIT 50
M N + +S+S+ + D P K+ GGWR++KYILGNE+FEKLASM LI+N+T
Sbjct: 1 MENVLTKTSSSSADSDITRAPPNSLLPPKKEAGGWRSVKYILGNESFEKLASMGLIANLT 60
Query: 51 VYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMM 110
VYLQ +N+ G+ LVN+ IWSGS N+T LLGAF+SD YLGRFRTL+ GS AS LGM++M
Sbjct: 61 VYLQTRFNMDGIQLVNVFNIWSGSTNVTPLLGAFLSDTYLGRFRTLICGSTASFLGMVVM 120
Query: 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTT 170
+L AGI LRP C +C +P+ WQ VL+ L LL+IGAGG+RPCNIAFGADQFDT
Sbjct: 121 SLIAGIPNLRPLHCTGGSNCQKPEFWQLGVLYLGLGLLAIGAGGVRPCNIAFGADQFDTR 180
Query: 171 TEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230
TEKGRAQLESFFNWWYFSFTV+LV+ LT VVY+QTNVSWV+G+ IP ACL FSI +FL+G
Sbjct: 181 TEKGRAQLESFFNWWYFSFTVSLVIALTVVVYVQTNVSWVIGYGIPAACLFFSIVIFLIG 240
Query: 231 RRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLM------IKLKRTNR 284
+ YI KP GSVF DMAKV+VAAC+KR S+E E+++YDPP + KL TN
Sbjct: 241 KHTYIITKPQGSVFVDMAKVIVAACKKRAMSLESTPENSFYDPPWIESDQRVTKLAHTNM 300
Query: 285 FKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQ 344
FK D+AALI +PS EL ++G PKN WRLCS+QQVEQLK ++ ++PV ++GI CFI+MDQ
Sbjct: 301 FKFFDKAALIADPS-ELDDKGLPKNSWRLCSVQQVEQLKLVVGLVPVWITGIGCFITMDQ 359
Query: 345 QNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRL 404
NTFG++QAIQ N + +FK+PP WM ++SM+ LS WI IYE++Y+P A K + K RL
Sbjct: 360 MNTFGLMQAIQSNNKIH-NFKIPPGWMGLSSMICLSTWIFIYEQIYLPFAKKRSKKNVRL 418
Query: 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFA 464
T++QRI TGIVM+ILCM+VAG VEK RRE ALK S +SP S+L LLPQ++LSGL E FA
Sbjct: 419 TMRQRINTGIVMAILCMVVAGIVEKNRRETALKQGSLLSPQSILLLLPQFSLSGLNEGFA 478
Query: 465 AVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWLGA 521
AVA+ME++TN +PESMRT+AGA FFLS S +SY++++++N++H VT + G +PWLG
Sbjct: 479 AVAVMEYYTNHLPESMRTLAGAIFFLSFSASSYLNTVIVNVVHHVTAKLGKTPWLGG 535
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565067|ref|XP_003550766.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At5g28470-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/585 (56%), Positives = 419/585 (71%), Gaps = 32/585 (5%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITS 79
+K GG R+IKYI+GNE+ EKL SMSL+SN+TVYL NYN G+ +VN+V IW+GS+N S
Sbjct: 19 RKAGGXRSIKYIIGNESSEKLKSMSLVSNLTVYLLTNYNQSGIFVVNVVQIWNGSSNFFS 78
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDP--PHCPQPQGWQ 137
++GAF+SD+YLGRFRTLL G ASLLG L +TLTAGIHQ RP +C D PHC P WQ
Sbjct: 79 IIGAFISDSYLGRFRTLLYGCFASLLGSLTITLTAGIHQQRPHTCQDKERPHCQLPXAWQ 138
Query: 138 FCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL 197
VLFA L LLSIGAGG RPCNIAFGADQFDT TEKGR QLES F WWYF+F + LVV L
Sbjct: 139 LAVLFAGLGLLSIGAGGFRPCNIAFGADQFDTNTEKGRGQLESLFYWWYFTFPIVLVVAL 198
Query: 198 TGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRK 257
T VVYIQTN+SW LGFAIPTAC+AFSIT+FL GR YI +P GS+F+DMAKV+VAA +K
Sbjct: 199 TVVVYIQTNISWTLGFAIPTACVAFSITIFLFGRHTYICKEPQGSIFTDMAKVIVAAFQK 258
Query: 258 RCFSVEPGCEHNYYDPPLMI----KLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRL 313
+++ Y P ++ +T+ FK LD+AA+I++P +EL +QG +N WRL
Sbjct: 259 H--NIQASGRAIYNPAPASTLENDRIVQTDGFKLLDKAAIISDP-NELNDQGMARNVWRL 315
Query: 314 CSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNI 373
CSLQQV KCL+ ILPV V+GI CFI MDQ NTFG+LQ +Q +S+GPHFK+PP WMN
Sbjct: 316 CSLQQVXHFKCLLGILPVWVAGICCFIVMDQHNTFGVLQVVQTIRSIGPHFKVPPGWMN- 374
Query: 374 TSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRE 433
SM+ALS+WI IYE +YIP+ KI K RL+++QRI+ GI+ SILCMLVA VEK+ +
Sbjct: 375 XSMVALSVWIYIYEGVYIPLVKKITKKPPRLSMRQRIRIGILXSILCMLVAAIVEKKCPD 434
Query: 434 LALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLS 493
ALKH F+SP+S L+PQ+ALSGL EAFA VAIMEFFT QMPE+MRTVAGA FFLSLS
Sbjct: 435 SALKHGLFISPLSYALLMPQFALSGLNEAFATVAIMEFFTLQMPENMRTVAGALFFLSLS 494
Query: 494 VASYVSSLVINIIHRVTKRTGNSPW--------------------LGAVNFVYFSFFASH 533
+A+Y+ SL++NI+H+VT G LG +NF+YF+FFA+
Sbjct: 495 IANYIGSLIVNIVHKVTSMRGKRACIGGHDLNLNRLDLYYYFIAALGVLNFIYFNFFATR 554
Query: 534 FVVNTTVAETGVKDVQLENVVAGNSANLPRRESIDEEKGLERPDT 578
++++ E + +VQ EN +A ++ P E + + G + T
Sbjct: 555 YIISD--EEDEITEVQPENSIAVGESSEPNDEKVLDRTGTRQRTT 597
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808857|ref|XP_002872312.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318149|gb|EFH48571.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/563 (57%), Positives = 415/563 (73%), Gaps = 37/563 (6%)
Query: 4 NIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL 63
++ SSS S+ K+ GGWRAIKYI+ NE+FEKLASMSLI N++VYL YNLGGV
Sbjct: 2 DVESSSPSS--HALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLTTKYNLGGVF 59
Query: 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123
LVN++ IW GS N+ +L GAFVSDAYLGRF TLL+GSIAS +GM ++ LTA + +LRP +
Sbjct: 60 LVNVINIWFGSCNVLTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIIALTAALPRLRPEA 119
Query: 124 CGDPPHCP-QPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
C DP +C QP WQ VLF+ L LL+IGAGGIRPCNIAFGADQFDT+T+KG+AQLE+FF
Sbjct: 120 CIDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGIRPCNIAFGADQFDTSTKKGKAQLETFF 179
Query: 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NWWYFSFTVALV+ LTGVVYIQTN+SWV+GF IPTACLA SIT FL+G+ YI KP GS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFLIGQHTYICAKPEGS 239
Query: 243 VFSDMAKVVVAACRKRCFSVEPGCEHNYY-------DPPLMIKLKRTNRFKCLDRAALIT 295
VF+D+ KVV AAC+KR ++ G + +Y P +++ K+ RF D+A+++T
Sbjct: 240 VFADIVKVVAAACKKR--KLKSGSDIMFYIGPSNDGSPTTLVRDKQRLRF--FDKASVVT 295
Query: 296 EPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ 355
P +EL E+G K WRLCS+QQV+ LKC+ AILPV V+GIACFI DQQN +GILQA+Q
Sbjct: 296 NP-NELNEEGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQ 354
Query: 356 MNKSVGPH-FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGI 414
M+K+ G H F++P WMN+ SM+ L++WI +YE + IP+ +I G+ KRLT++QRI+ GI
Sbjct: 355 MDKTFGRHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTMKQRIEIGI 414
Query: 415 VMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTN 474
VM I CM+VA EK+RR ALK+ SFVSP+S++ LLPQ+AL+GLTEAF+AVA+MEF T
Sbjct: 415 VMGIACMIVAAFQEKKRRASALKNGSFVSPISIVMLLPQFALAGLTEAFSAVALMEFLTV 474
Query: 475 QMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWLG-------------- 520
+MPE MR VAGA FFLS S+ASY+ +L+IN+I VT++ G S WLG
Sbjct: 475 RMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFF 533
Query: 521 ------AVNFVYFSFFASHFVVN 537
N +YF F+AS F +
Sbjct: 534 IIAGIQVANLLYFKFYASRFATD 556
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358511|ref|NP_198199.2| major facilitator protein [Arabidopsis thaliana] gi|310947328|sp|Q3E8X3.2|PTR52_ARATH RecName: Full=Probable peptide/nitrate transporter At5g28470 gi|91806916|gb|ABE66185.1| proton-dependent oligopeptide transport family protein [Arabidopsis thaliana] gi|332006421|gb|AED93804.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 323/560 (57%), Positives = 409/560 (73%), Gaps = 39/560 (6%)
Query: 4 NIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL 63
++ SSS S+ K+ GGWRAIKYI+ NE+FEKLASMSLI N++VYL YNLGGV
Sbjct: 2 DVESSSPSS--HALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVF 59
Query: 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123
LVN++ IW GS NI +L GAFVSDAYLGRF TLL+GSIAS +GM + LTA + LRP +
Sbjct: 60 LVNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDA 119
Query: 124 CGDPPHCP-QPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
C DP +C QP WQ VLF+ L LL+IGAGG+RPCNIAFGADQFDT+T+KG+A LE+FF
Sbjct: 120 CIDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFF 179
Query: 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NWWYFSFTVALV+ LTGVVYIQTN+SWV+GF IPTACLA SIT F++G+ YI K GS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGS 239
Query: 243 VFSDMAKVVVAACRKRCFSVEPGCEHNYY-------DPPLMIKLKRTNRFKCLDRAALIT 295
VF+D+ KVV AAC+KR V+PG + +Y P +++ K RF D+A+++T
Sbjct: 240 VFADIVKVVTAACKKR--KVKPGSDITFYIGPSNDGSPTTLVRDKHRLRF--FDKASIVT 295
Query: 296 EPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ 355
P +EL E G K WRLCS+QQV+ LKC+ AILPV V+GIACFI DQQN +GILQA+Q
Sbjct: 296 NP-NELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQ 354
Query: 356 MNKSVGPH-FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGI 414
M+K+ GPH F++P WMN+ SM+ L++WI +YE + IP+ +I G+ KRLTL+ RI+ I
Sbjct: 355 MDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIE--I 412
Query: 415 VMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTN 474
VM I+CM+VAG EK+RR ALK+ SFVSP+S++ LLPQ+AL+GLTEAF+AVA+MEF T
Sbjct: 413 VMGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTV 472
Query: 475 QMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWLG-------------- 520
+MPE MR VAGA FFLS S+ASY+ +L+IN+I VT++ G S WLG
Sbjct: 473 RMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFF 531
Query: 521 ------AVNFVYFSFFASHF 534
N +YF FAS +
Sbjct: 532 IIAGIQVANLLYFRLFASRY 551
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491348|ref|XP_003634269.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At5g28470-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 312/509 (61%), Positives = 385/509 (75%), Gaps = 11/509 (2%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITS 79
K PGGW+++KYIL +E+FEK AS S I+N+TVYL+ YN+ G++LVN+++ WSGS+NI+S
Sbjct: 26 KTPGGWKSVKYILAHESFEKSASTSSIANLTVYLRTKYNMDGIILVNVISXWSGSSNISS 85
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFC 139
L GAFVSDAYLGRF TLL+GS+ S LGM M LTAG+ ++RP C +CPQP WQ
Sbjct: 86 LAGAFVSDAYLGRFHTLLLGSMVSFLGMGTMNLTAGVTEVRPFPCNGQRNCPQPYAWQLV 145
Query: 140 VLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199
+L+ L LL+IGAGGIR C+IAFGADQFD TTEKGRA L+SFF+WWYFSF +ALVV L+
Sbjct: 146 LLYGVLGLLAIGAGGIRTCSIAFGADQFDPTTEKGRAXLQSFFDWWYFSFILALVVALSV 205
Query: 200 VVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRC 259
VVYIQTNVSWVLGFAIPTACL+ SI +FLLGR I +K GS+F DM KVV AA K
Sbjct: 206 VVYIQTNVSWVLGFAIPTACLSISIIIFLLGRHTCICMKVXGSIFVDMVKVVAAAGSKHR 265
Query: 260 FSVEPGCEHNYYDP------PLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRL 313
S++ CEH +YDP P KL RTNRFK LD+A L +PS EL G K+GW L
Sbjct: 266 ASLD--CEHTFYDPPSNKAGPWTSKLARTNRFKHLDKATLSVDPS-ELDTHGKAKDGWSL 322
Query: 314 CS-LQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMN 372
CS ++QVE+LKCL+AI PV +SG+ CF+ MDQ NTFGILQAIQ N+S+G F++P W+
Sbjct: 323 CSVIEQVEELKCLLAIFPVWISGVTCFVVMDQHNTFGILQAIQTNRSIG-RFEIPLDWLG 381
Query: 373 ITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRR 432
+ SM++LS+WI +YE++YIP A GK RL LQQRI GI+M ILCML+AG E RRR
Sbjct: 382 MASMISLSIWITMYEQIYIPQARNFXGKGLRLRLQQRIAIGILMPILCMLLAGIGEGRRR 441
Query: 433 ELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSL 492
AL+ SF P S+ LLPQ+ LSGLTEAFAAVA+ME+FT QMP+SMRTVAGA F LSL
Sbjct: 442 HSALRDGSFTLPTSVAILLPQFILSGLTEAFAAVAVMEYFTTQMPDSMRTVAGAIFHLSL 501
Query: 493 SVASYVSSLVINIIHRVTKRTGNSPWLGA 521
S+ SY+SSL++N+IH +T G SPWLG
Sbjct: 502 SITSYLSSLLVNVIHAITGSRGWSPWLGG 530
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566575|ref|XP_003551506.1| PREDICTED: probable peptide/nitrate transporter At5g28470-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/584 (51%), Positives = 399/584 (68%), Gaps = 36/584 (6%)
Query: 1 MANNIHSSSAST----VEQDPSA-KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQN 55
M N HSS + + SA KK GGWRA++YILGNETFEKLASMSLI+N+ +YL+
Sbjct: 1 MVNENHSSESQNHLPYLPHSSSARKKLGGWRAVRYILGNETFEKLASMSLIANLVLYLRT 60
Query: 56 NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115
YN+ + V + IW+GS N L+GA+++DAY+G+F LL+GSIAS LGM+ M L AG
Sbjct: 61 QYNMDTTVSVEVFNIWAGSANFLPLVGAYLADAYMGKFNMLLIGSIASFLGMVFMALGAG 120
Query: 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGR 175
I LRP SC +C +P G Q +L++ L L +IG+GG+RPCNIAFGADQFDT TEKGR
Sbjct: 121 IPSLRPPSCPTQSNCIEPTGSQLAILYSGLALFAIGSGGLRPCNIAFGADQFDTKTEKGR 180
Query: 176 AQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYI 235
AQLESF NWWYF FTVAL+V LT VVYIQTN+SW LGF IPT C AFS+T+FL G Y+
Sbjct: 181 AQLESFCNWWYFLFTVALLVALTVVVYIQTNISWFLGFVIPTVCFAFSLTIFLWGLNTYV 240
Query: 236 YIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPL-------MIKLKRTNRFKCL 288
KP GS+ +D+ KV VAA RKR V+ E +++DPPL + KL TNRF+
Sbjct: 241 RSKPKGSIITDLVKVAVAAGRKR--HVKLDSELSFHDPPLASESEQSLTKLAHTNRFRYF 298
Query: 289 DRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTF 348
D+AA++T+PS + T + WRLCS+QQVE+LK ++A LPV ++GI CF SM Q ++F
Sbjct: 299 DKAAVVTDPSERDSNEKT-VDSWRLCSVQQVEELKSILATLPVWLAGIICFFSMGQASSF 357
Query: 349 GILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQ 408
GILQA+Q NKS+GP+F +PPAWM + M+ALSLWI +YE++Y+P K + KRL+++
Sbjct: 358 GILQALQTNKSIGPNFSVPPAWMGLVPMIALSLWIFLYEKIYVPWTMKATKRGKRLSIEN 417
Query: 409 RIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAI 468
RI GI+ SI CM+V+G VE RR+ ALKH SF SP S+ L+PQ+ALSGL EAFAA+ +
Sbjct: 418 RILIGILFSIACMVVSGLVEVHRRDDALKHGSFESPSSIWWLVPQFALSGLVEAFAAIPM 477
Query: 469 MEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPW---------- 518
ME T+ PESM+T+ GA FFLSLS+A+Y++++++ I+ VT R PW
Sbjct: 478 MELLTSYWPESMKTLGGATFFLSLSIANYLNTILVRIVVAVT-RNSRRPWLGGNDLNKNR 536
Query: 519 ----------LGAVNFVYFSFFASHFVVNTTVAETGVKDVQLEN 552
LG +N +YF FFA H++ + G + + E
Sbjct: 537 LEYYYYTIAVLGGLNLLYFQFFARHYLHTEMLQRPGRNEAEDEE 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.875 | 0.906 | 0.541 | 9.6e-144 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.911 | 0.851 | 0.387 | 7.1e-109 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.875 | 0.880 | 0.395 | 1.2e-100 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.882 | 0.829 | 0.354 | 2.4e-92 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.901 | 0.889 | 0.333 | 5.4e-86 | |
| TAIR|locus:2196734 | 555 | AT1G69860 [Arabidopsis thalian | 0.856 | 0.893 | 0.348 | 2.2e-82 | |
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.908 | 0.866 | 0.326 | 3.2e-81 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.863 | 0.838 | 0.336 | 2.1e-75 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.877 | 0.868 | 0.328 | 3.6e-73 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.865 | 0.878 | 0.320 | 4.6e-73 |
| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
Identities = 285/526 (54%), Positives = 362/526 (68%)
Query: 4 NIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXX 63
++ SSS S+ K+ GGWRAIKYI+ NE+FEKLASMSLI N++V
Sbjct: 2 DVESSSPSS--HALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVF 59
Query: 64 XXXIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSS 123
++ IW GS NI +L GAFVSDAYLGRF TLL+GSIAS A + LRP +
Sbjct: 60 LVNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDA 119
Query: 124 CGDPPHCP-QPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
C DP +C QP WQ VLF+ L LL+IGAGG+RPCNIAFGADQFDT+T+KG+A LE+FF
Sbjct: 120 CIDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFF 179
Query: 183 NWWYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NWWYFSF YIQTN+SWV+GF IPTACLA SIT F++G+ YI K GS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGS 239
Query: 243 VFSDMAKVVVAACRKRCFSVEPGCEHNYY-------DPPLMIKLKRTNRFKCLDRAALIT 295
VF+D+ KVV AAC+KR V+PG + +Y P +++ K RF D+A+++T
Sbjct: 240 VFADIVKVVTAACKKR--KVKPGSDITFYIGPSNDGSPTTLVRDKHRLRF--FDKASIVT 295
Query: 296 EPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ 355
P+ EL E G K WRLCS+QQV+ LKC+ AILPV V+GIACFI DQQN +GILQA+Q
Sbjct: 296 NPN-ELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQ 354
Query: 356 MNKSVGPH-FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGI 414
M+K+ GPH F++P WMN+ SM+ L++WI +YE + IP+ +I G+ KRLTL+ RI+ I
Sbjct: 355 MDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIE--I 412
Query: 415 VMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTN 474
VM I+CM+VAG EK+RR ALK+ SFVSP+S++ LLPQ+AL+GLTEAF+AVA+MEF T
Sbjct: 413 VMGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTV 472
Query: 475 QMPESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWLG 520
+MPE MR VAGA FF IN+I VT++ G S WLG
Sbjct: 473 RMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLG 517
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 212/547 (38%), Positives = 321/547 (58%)
Query: 7 SSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXX 66
SS S ++ + KKPGGWRA+ +ILGNET E+L S+ L++N V
Sbjct: 37 SSPGSILDAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAAN 96
Query: 67 IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSCG- 125
++ IWSG N+T L+GA++SD Y+GRF+T+ S A+ A QL P+SC
Sbjct: 97 VINIWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNS 156
Query: 126 -DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184
DP C P Q VL L LS+G+GGIRPC+I FG DQFD TE+G + SFFNW
Sbjct: 157 QDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNW 216
Query: 185 WYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVF 244
+Y +F YIQ VSW++GF+IPT +A ++ +F G + Y+Y+KP GS+F
Sbjct: 217 YYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIF 276
Query: 245 SDMAKVVVAACRKRCFSV--EPGCEHNYYDPPL----MIKLKRTNRFKCLDRAALITEPS 298
S +A+V+VAA +KR + E YYDP + + KL R+N+F+CLD+AA++ E
Sbjct: 277 SGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIEG- 335
Query: 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNK 358
+L +G P + WRLCS+Q+VE++KCLI I+P+ +GI +M Q TF + QA++M++
Sbjct: 336 -DLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDR 394
Query: 359 SVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418
++GP F++P +++ S+L + +++ Y+R+++P +I G +TL QRI TGIV +I
Sbjct: 395 NLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAI 454
Query: 419 LCMLVAGSVEKRRRELALK--HDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQM 476
M+VAG VE+ RR ++ + ++PMS+ L PQ L GL EAF + +EFF +Q
Sbjct: 455 FSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQF 514
Query: 477 PESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL------GAVNFVYFSFF 530
PE MR++A + F + ++H+ + WL G +++ Y+
Sbjct: 515 PEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYY-LI 573
Query: 531 ASHFVVN 537
A VVN
Sbjct: 574 AVLGVVN 580
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 211/533 (39%), Positives = 307/533 (57%)
Query: 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXXIVTIWSGSNNITS 79
KK GGWRAI +ILGNET EKL S+ + +N + + +W G N
Sbjct: 13 KKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAP 72
Query: 80 LLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSCGDP-P-HCPQPQGWQ 137
LLGA +SDAY+GRF+T+ S+ S A + QL P C +P P C P Q
Sbjct: 73 LLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQ 132
Query: 138 FCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFXXXXXXXX 197
+LF L LSIG+GGIRPC+I FG DQFD TE+G + SFFNW+Y +
Sbjct: 133 LGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSH 192
Query: 198 XXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRK 257
Y+QT VSWV+GF+IPT+ +A ++ LF +G R Y+Y+KP GSVFS +A+V+VAA +K
Sbjct: 193 TVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKK 251
Query: 258 RCFS---VEPGCEHNYYDPPL----MIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNG 310
R V+ G E YY+PP+ + KL T++FK LD+AA+I + +L +G P N
Sbjct: 252 RDLKISLVDDGTEE-YYEPPVKPGVLSKLPLTDQFKFLDKAAVILDG--DLTSEGVPANK 308
Query: 311 WRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAW 370
WRLCS+Q+VE++KCLI ++PV +GI ++M Q TF + QA +M++ +GPHF++P A
Sbjct: 309 WRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAAS 368
Query: 371 MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR 430
+ + S + + +W+ IYE L +P ++ + R+TL QR+ GIV +IL M AG VE
Sbjct: 369 ITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSMFTAGFVEGV 426
Query: 431 RRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFX 490
RR A + ++ MS+ L L GL E+F + ++EFF +Q PE MR++A + F
Sbjct: 427 RRTRATE----MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLFPL 482
Query: 491 XXXXXXXXXXXXINIIHRVTKRTGNSPWL------GAVNFVYFSFFASHFVVN 537
+ +H+V+ + WL G +++ Y+ A VVN
Sbjct: 483 SFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYY-LIAVLGVVN 534
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 188/530 (35%), Positives = 299/530 (56%)
Query: 8 SSASTVEQDPSAKKP---GGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXX 64
++ +VE+D +K GW+ + +I+GNETFEKL + +SN+ V
Sbjct: 27 TAVDSVEEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITA 86
Query: 65 XXIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSC 124
I+ +SG+ N + + AF+ D Y GR++TL V IA A + QL P++C
Sbjct: 87 ATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAAC 146
Query: 125 GDPPH--CPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
G C P G Q L L L +GAGGIRPCN+AFGADQF+ +E G+ ++SFF
Sbjct: 147 GTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFF 206
Query: 183 NWWYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NW++F+F Y+Q+NVSW +G IP + + +F G + Y+ IK +GS
Sbjct: 207 NWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGS 266
Query: 243 VFSDMAKVVVAACRKRCF--SVEPGCE-HNYYDPPLM-IKLKRTNRFKCLDRAALITEPS 298
+ +A+V+ A +KR + +P +NYY P KLK T++F+ LD+AA++T P
Sbjct: 267 PLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PE 325
Query: 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNK 358
+LQ G P + W+LC++QQVE++KC++ +LP+ + ++++ QQ T+ + QA+Q ++
Sbjct: 326 DKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDR 385
Query: 359 SVGPH-FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417
+G F +P A + M ++++I++Y+R+ +P +I G +TL QRI TGI +
Sbjct: 386 RLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFA 445
Query: 418 ILCMLVAGSVEKRRRELALKHDSF--------VSPMSLLTLLPQYALSGLTEAFAAVAIM 469
++VAG VE+RRR AL + +S MS + L+PQ +L+G+ EAFAA+ M
Sbjct: 446 TASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQM 505
Query: 470 EFFTNQMPESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL 519
EF+ Q PE+MR+ AG+ F+ I +HR T+ + WL
Sbjct: 506 EFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWL 555
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 181/542 (33%), Positives = 290/542 (53%)
Query: 5 IHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXX 64
+ + + E D S GW+ + +I+GNETFEKL + SN+ +
Sbjct: 3 VEKTEKNIAEDDESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITA 62
Query: 65 XXIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSC 124
+V I+ G++N +++ AF+ D+Y GR++TL IA A IH L P+ C
Sbjct: 63 AKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQC 122
Query: 125 GDP--PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
C P Q L A+ LL IGAGGIRPCN+ FGADQFD T++G+ +ESFF
Sbjct: 123 AKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFF 182
Query: 183 NWWYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGS 242
NW++F+F Y+Q+NVSW +G AIP + +F G + Y+ +K +GS
Sbjct: 183 NWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGS 242
Query: 243 VFSDMAKVVVAACRKRCFS-VEPGCEHNYYDPPLM-IKLKRTNRFKCLDRAALITEPSHE 300
+ +V+V A +KR V P +NY KL T +F+ LD++A+ T+ +
Sbjct: 243 PIHSITRVIVVAIKKRRLKPVGPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDD-K 301
Query: 301 LQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSV 360
L + G+P + W+LCS+QQVE++KC+I +LPV +S +++ QQ T+ I Q++Q ++ +
Sbjct: 302 LNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRL 361
Query: 361 GP-HFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSIL 419
GP F++P + ML ++++I IY+R+ +P K G+ +T QR+ G+ + I
Sbjct: 362 GPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCIT 421
Query: 420 CMLVAGSVEKRRRELALKHDSF--------VSPMSLLTLLPQYALSGLTEAFAAVAIMEF 471
M+V+ VE+ RR++AL + +S MS + L+PQ L G+ +A A V MEF
Sbjct: 422 SMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEF 481
Query: 472 FTNQMPESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL------GAVNFV 525
+ Q PE+MR+ AG+ ++ ++ +H T+ WL G + +
Sbjct: 482 YYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYF 541
Query: 526 YF 527
YF
Sbjct: 542 YF 543
|
|
| TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 182/522 (34%), Positives = 283/522 (54%)
Query: 7 SSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXX 66
SSS T Q +KP GW+A+ YI+GNET E+LA+ L++N V
Sbjct: 8 SSSDLTTRQ----RKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVT 63
Query: 67 IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSCGD 126
++ WS N ++GAF+SD+Y G+F T++ GSIA + + LRP C
Sbjct: 64 LINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTA 123
Query: 127 PPHCPQ--PQGW-QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183
Q P + Q VL + L LLS+G GGIR C++ F DQFD +TE+GR SFF+
Sbjct: 124 DQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSFFS 183
Query: 184 WWYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSV 243
W+Y + Y+Q N+SW +GFAIPT F++ L +G R Y+++KP GSV
Sbjct: 184 WYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSV 243
Query: 244 FSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMI-----KLKRTNRFKCLDRAALITEPS 298
FS + KV+VAA +KR G + Y+ P L KL T++F+ L++A ++
Sbjct: 244 FSGVFKVLVAAYKKRKARFTSGID--YHQPLLETDLQSNKLVLTDQFRFLNKAVIVMNND 301
Query: 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNK 358
E G + WR C+++Q+E +K +I+I+P+ S I F++M+QQ TF + QA++M+
Sbjct: 302 ----EAGNEE--WRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDL 355
Query: 359 SV-GPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417
G + +PPA + + S+L + +W+ YE + + I + ++L Q++ G + S
Sbjct: 356 QFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNIFS 415
Query: 418 ILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP 477
I ML++G VE++RR+L+L MS+ L PQ L G + F V + EFF Q+P
Sbjct: 416 ISTMLISGIVERKRRDLSLNGVK----MSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVP 471
Query: 478 ESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL 519
+MR++ + + ++I+H VT R G S WL
Sbjct: 472 INMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS-WL 512
|
|
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 179/548 (32%), Positives = 298/548 (54%)
Query: 1 MANNIHSSSASTVEQDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXX 60
M N + + A ++ + K GG + +I+ NE FEK+AS L+ N+ +
Sbjct: 1 MENPPNETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFG 60
Query: 61 XXXXXXIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLR 120
++ +WS ++N T LLGAF+SD+YLGRF T+ + S++S A + Q++
Sbjct: 61 VAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVK 120
Query: 121 PSSCGDPP----HCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGR 175
PS C DP HC Q +L++A L+SIG+GGIRPC++AFGADQ D K
Sbjct: 121 PSPC-DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNE 179
Query: 176 AQLESFFNWWYFSFXXXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYI 235
LESFF W+Y S YIQ ++ W +GF +P + + LF+L Y+
Sbjct: 180 RVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYV 239
Query: 236 YIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIK---LKR-TNRFKCLDRA 291
S+F+ +A+ +VAA +KR S+ P H+ +D +K +K + + + L++A
Sbjct: 240 TRGVTKSLFTGLAQAIVAAYKKRKLSL-PD-HHDSFDCYYHMKDSEIKAPSQKLRFLNKA 297
Query: 292 ALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGIL 351
LI+ E+ G N WRLC+ +VE+LK LI ++P+ +GI I+ Q ++F +L
Sbjct: 298 CLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQ-SSFQLL 356
Query: 352 QAIQMNKSVGPH---FKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQ 408
QA M++ + H F++P + +++AL+LW+++Y+R IP+A+KI G+ RL+++
Sbjct: 357 QATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKL 416
Query: 409 RIKTGIVMSILCMLVAGSVEKRRRELALK-----HDSFVSPMSLLTLLPQYALSGLTEAF 463
R+ G+ MS L M ++ VE RR+ A+ + + V +S + L+PQY L GL EA
Sbjct: 417 RMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEAL 476
Query: 464 AAVAIMEFFTNQMPESMRTVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWLGA-V 522
A+ EFF + P+SM ++A + F +N ++ +T R G W+ +
Sbjct: 477 TAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNI 536
Query: 523 NFVYFSFF 530
N +++++
Sbjct: 537 NKGHYNYY 544
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 173/514 (33%), Positives = 272/514 (52%)
Query: 17 PSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXXIVTIWSGSNN 76
P+ K GG + +I NE EKLA + +N+ +T ++G+++
Sbjct: 20 PNRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSS 78
Query: 77 ITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSCGDPPHCPQPQGW 136
+T LLGAF++D++ GRF T+ SI A I LRP C C
Sbjct: 79 LTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTA 138
Query: 137 QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFXXXXXXX 196
Q +L+ AL L ++G+GGIRPC +AFGADQFD + + ++FNW+YF
Sbjct: 139 QLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLA 198
Query: 197 XXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACR 256
+IQ NV W LG IPT + S+ F+ G + Y ++ PAGS F+ + +V VAA R
Sbjct: 199 VTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFR 258
Query: 257 KRCFSV--EPGCEH--NYYDPPLMI--KLKRTNRFKCLDRAALITEPSHELQEQGTPKNG 310
KR + +P + + D P+ + KL T LD+AA++TE + + G N
Sbjct: 259 KRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDN--LKPGQIPNH 316
Query: 311 WRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAW 370
WRL ++ +VE+LK +I + P+ SGI + QQ TF + QA MN+ + F++P
Sbjct: 317 WRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGS 376
Query: 371 MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR 430
M++ + +A+ I+ Y+R+++ VA K G + +T R+ G V+SI+ LVAG VE +
Sbjct: 377 MSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVK 436
Query: 431 RRELALKHDSF-----VSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAG 485
R+ +A++H + P+S L L+PQY L G+ EAF ++ +EFF +Q PESMR+ A
Sbjct: 437 RKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTAT 496
Query: 486 AAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL 519
A F+ + ++H+ + + S WL
Sbjct: 497 ALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWL 530
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| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 173/526 (32%), Positives = 258/526 (49%)
Query: 17 PSAKKPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXXIVTIWSGSNN 76
P +K G W+A +ILGNE E+LA + N+ VT W G+
Sbjct: 37 PLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCY 96
Query: 77 ITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSC-GDPPHCPQPQG 135
+T L+GA ++DAY GR+ T+ S A + L+P+ C GD CP
Sbjct: 97 LTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD--FCPSATP 154
Query: 136 WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFXXXXXX 195
Q+ + F L L+++G GGI+PC +FGADQFD T + R + SFFNW+YFS
Sbjct: 155 AQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALV 214
Query: 196 XXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAAC 255
+IQ N W LGF IPT + +I F G Y + KP GS + +++VVVA+
Sbjct: 215 SSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF 274
Query: 256 RKRCFSVEPGCEHNY--YDPPLMI----KLKRTNRFKCLDRAALITEPSHELQEQGTPKN 309
RK V Y D I K++ T+ + LD+AA+I+E E + G N
Sbjct: 275 RKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISE---EESKSGDYSN 331
Query: 310 GWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPA 369
WRLC++ QVE+LK LI + P+ SGI Q +T + Q MN +G F++PPA
Sbjct: 332 SWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGS-FQLPPA 390
Query: 370 WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEK 429
+ ++ +W+ +Y+R +P+A K G K T QR+ G+ +S+LCM A VE
Sbjct: 391 ALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEI 450
Query: 430 RR----RELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAG 485
R +L L P+S+L +PQY + G E F + +EFF +Q P++MR++
Sbjct: 451 IRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCS 510
Query: 486 AAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWLGA-VNFVYFSFF 530
A + ++ T R G W+ +N + +F
Sbjct: 511 ALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYF 556
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 166/518 (32%), Positives = 263/518 (50%)
Query: 13 VEQDPSAK-KPGGWRAIKYILGNETFEKLASMSLISNITVXXXXXXXXXXXXXXXIVTIW 71
+ ++P+ K K G W+A ++ILGNE E+LA + +N+ VT W
Sbjct: 15 IHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNW 74
Query: 72 SGSNNITSLLGAFVSDAYLGRFRTLLVGSIASXXXXXXXXXXAGIHQLRPSSCG-DPPHC 130
SG+ IT L+GAF++DAYLGR+ T+ A + L+P +C D H
Sbjct: 75 SGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCH- 133
Query: 131 PQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFX 190
P Q V F AL ++++G GGI+PC +FGADQFD E + + SFFNW+YFS
Sbjct: 134 --PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSIN 191
Query: 191 XXXXXXXXXXXYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKV 250
+IQ NV W GF +PT + ++ F G R Y +P GS + + +V
Sbjct: 192 VGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251
Query: 251 VVAACRKRCFSV--EPGCEHNYYDPPLMIK----LKRTNRFKCLDRAALITEPSHELQEQ 304
+VAA RK V + D IK L T+ K D+AA+ ++ S +++
Sbjct: 252 IVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQ-SDSIKDG 310
Query: 305 GTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHF 364
N WRLCS+ QVE+LK +I +LPV +GI Q +T +LQ M++ +G +F
Sbjct: 311 EV--NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368
Query: 365 KMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVA 424
++P A +++ +++ W +Y++ IP+A K + T QR+ G+V+SI M+ A
Sbjct: 369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428
Query: 425 GSVEKRRRELALKHDSFVSP---MSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMR 481
G +E R + H+++ MS+ +PQY L G E F + +EFF +Q P++MR
Sbjct: 429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488
Query: 482 TVAGAAFFXXXXXXXXXXXXXINIIHRVTKRTGNSPWL 519
++ A + ++ ++TK+ G W+
Sbjct: 489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI 526
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E8X3 | PTR52_ARATH | No assigned EC number | 0.5767 | 0.8998 | 0.9320 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_VI000312 | hypothetical protein (585 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 579 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 8e-53 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-16 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 2e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-04 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 0.002 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 8e-53
Identities = 108/405 (26%), Positives = 176/405 (43%), Gaps = 40/405 (9%)
Query: 93 FRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGA 152
F+T+L+GSI +G +++TL A L P + + L L+++G
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVA--------------LFYIGLYLIALGT 46
Query: 153 GGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLG 212
GGI+P AFGADQFD E + + FF+W+YFS ++ Y+Q NV + LG
Sbjct: 47 GGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103
Query: 213 FAIPTACLAFSITLFLLGRRCYI-YIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYY 271
F +P + ++ +FLLG R Y P GS F+ ++ A K P H Y
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163
Query: 272 DPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPV 331
+ ++ K R A+I P PK V L+ ++ +LP+
Sbjct: 164 WALEKYNKRSISQTKVHTRVAVIFIPL--------PKFWALFDQQGSVWLLQAILLMLPI 215
Query: 332 CVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYI 391
I Q T + Q M++ + P F++PPA + LA+ + + I + L
Sbjct: 216 WAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVY 275
Query: 392 PVATKIAGKVKR-LTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVS----PMS 446
P+ ++KR LTL QR G+ + I+ +A VE +R A P+
Sbjct: 276 PL-----LRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLF 330
Query: 447 LLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLS 491
+L LP+ +SG+ +EF + +P SM ++ +
Sbjct: 331 ILWSLPELFISGV----GLAGALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 84/512 (16%), Positives = 180/512 (35%), Gaps = 81/512 (15%)
Query: 8 SSASTVEQDPSAKKPGGW-RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL--- 63
S + E K G R + I E +E+ + + + + +YL G
Sbjct: 2 SLPTEEENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDET 61
Query: 64 -LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPS 122
+ + + +T ++G +++D LG RT+++G+I +G L++ +++
Sbjct: 62 HATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG----- 116
Query: 123 SCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182
P G L+ L L+ +G G +P + + + K + + F
Sbjct: 117 ----------PGG-----LYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGF 157
Query: 183 NWWYFSFTVA--LVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYI--- 237
+Y + + ++TG + N W +GF + + + +FLLGRR I
Sbjct: 158 TLFYMGINIGSLIAPIITG--LLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215
Query: 238 -KPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITE 296
P F+ + V+ L L L+
Sbjct: 216 PDPNPLSFNFLLPVLGGLVVM----------------ILAALLTLLLNQNTFSGVLLVIS 259
Query: 297 PSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQM 356
+ S + ++ + L+A +P+ + + + +Q + L A +
Sbjct: 260 ILIAIIYFAEAFR-----SPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN 314
Query: 357 NKSVGPHFKMPPAWMNITSMLAL-SLWILIYERLYIPVATKIAGKVKRLTLQQRIKTG-- 413
F++PPAW +L +I++ + P+ + K+ R Q
Sbjct: 315 VNRQIFGFEVPPAWFQ-----SLNPFFIIL----FSPILAALWTKLGRGNKQPSTPIKFA 365
Query: 414 ---IVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIME 470
I+ + +++ + L +S+ L+ Y L E F + +
Sbjct: 366 LGLILAGLGFLILLLAGIWFGGPSGL--------VSVWWLVLSYVLQSFGELFISPVGLS 417
Query: 471 FFTNQMPESMRTVAGAAFFLSLSVASYVSSLV 502
T P ++++ A +FL+++ + V
Sbjct: 418 MVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 93/360 (25%), Positives = 158/360 (43%), Gaps = 65/360 (18%)
Query: 77 ITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGW 136
+T L+GA ++D++LG+F+T+L S+ ++G + +L A PS G P H
Sbjct: 38 LTPLIGALIADSWLGKFKTILYLSLVYVVGHALASLGA-----VPSL-GHPLHD------ 85
Query: 137 QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS------FT 190
+ L L+++G GGI+PC AFG DQF E+ + FF+++YF+ F+
Sbjct: 86 --ALSLVGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRFRFFSFFYFAINAGSLFS 140
Query: 191 VALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAK 249
+ +L G V + L F +P + ++ +F +G + Y P G++ S + K
Sbjct: 141 TIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMK 200
Query: 250 VVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKN 309
+V A +KR F D P R LD AA PK
Sbjct: 201 CIVFALKKR-FR------TRSEDWP---------RLHWLDWAA--------------PKY 230
Query: 310 GWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPA 369
R+ + K L+ +L + + + DQQ + LQA +M+ VG F + P
Sbjct: 231 LIRM-----IRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-LFPIQPD 284
Query: 370 WMNITSMLALSLWILIYERLYI-PVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVE 428
M L +LI ++ V +A R T +++ G++++ L VA ++
Sbjct: 285 QMQAV----NPLLVLILVPIFDYVVYPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQ 340
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 31/191 (16%)
Query: 41 ASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGS 100
L+S L + L IV+ +S + SLL ++SD + GR R LL+G
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGL 71
Query: 101 IASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNI 160
+ LG L++ + + +L LL +G G + P
Sbjct: 72 LLFALGSLLLAFASSLW----------------------LLLVGRFLLGLGGGALYPAAA 109
Query: 161 AFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV--VLTGVVYIQTNVSWVLGFAIPTA 218
A A+ F + + F + ++ +L G++ W+
Sbjct: 110 ALIAEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163
Query: 219 CLAFSITLFLL 229
L + LFLL
Sbjct: 164 LLLALLLLFLL 174
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 25/190 (13%)
Query: 43 MSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102
M I + + Q I +S + + +G + D G +T+++G I
Sbjct: 29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIV 88
Query: 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAF 162
+LG M+ ++ ++F L +++G+G + N +
Sbjct: 89 LMLGHFMLAMSIYPD----------------------LIFYGLGTIAVGSGLFK-ANPSS 125
Query: 163 GADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAF 222
+ + R + F +Y S + + I N + +GF + +
Sbjct: 126 MVGKLYERGDMPR--RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI 183
Query: 223 SITLFLLGRR 232
+ F GR
Sbjct: 184 GLLTFFAGRH 193
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The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 31/195 (15%)
Query: 40 LASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVG 99
L L + +YL + + + ++T +S + L +SD + GR R LL+G
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 100 SIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCN 159
+ LG+L++ + + W VL L +G G + P
Sbjct: 69 LLLFALGLLLLLFASSL-------------------WLLLVLRV---LQGLGGGALFPAA 106
Query: 160 IAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV--VLTGVVYIQTNVSWVLGFAIPT 217
A AD F E+GRA F + + +L G++
Sbjct: 107 AALIADWF-PPEERGRA-----LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL 160
Query: 218 ACLAFSITLFLLGRR 232
A LA + LL R
Sbjct: 161 ALLAAVLAALLLPRP 175
|
Length = 346 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 40/213 (18%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFV 85
RAI Y++ + +E + + + + +YL N + + + +T +LG F+
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 86 SDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAAL 145
+D LG +++G++ +G +++ G ++ PS L+ +L
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVL----GASEIHPS-----------------FLYLSL 107
Query: 146 TLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205
++ G G + N++ + T+ R + F+ Y + V ++ Y Q
Sbjct: 108 AIIVCGYGLFKS-NVSCLLGELYEPTDPRR---DGGFSLMYAAGNVGSIIAPIACGYAQE 163
Query: 206 NVSWVLGFAIPTACLAFSITLFLLGRRCYIYIK 238
SW +GF + + + +FL G R + + +
Sbjct: 164 EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.92 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.9 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.89 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.89 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.88 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.88 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.88 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.88 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.87 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.86 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.86 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.86 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.84 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.83 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.82 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.82 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.81 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.81 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.8 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.79 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.77 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.77 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.75 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.74 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.73 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.68 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.68 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.65 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.65 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.64 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.63 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.63 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.6 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.59 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.58 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.58 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.57 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.54 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.4 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.38 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.36 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.33 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.32 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.32 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.31 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.3 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.3 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.3 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.27 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.27 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.21 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.21 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.2 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.2 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.2 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.19 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.18 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.18 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.18 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.18 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.17 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.17 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.16 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.16 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.15 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.15 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.13 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.12 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.12 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.11 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.09 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.05 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.04 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.04 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.04 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.02 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.99 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.99 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.99 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.96 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.93 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.92 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.92 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.91 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.89 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.86 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.83 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.81 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.77 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.76 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.76 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.71 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.69 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.67 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.65 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.63 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.63 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.63 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.62 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.62 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.61 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.55 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.54 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.52 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.51 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.51 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.5 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.5 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.4 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.39 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.37 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.36 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.35 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.34 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.29 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.22 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.16 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.16 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.14 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.12 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.1 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.03 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.02 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.0 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.9 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.86 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.81 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.65 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.65 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.64 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.62 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.59 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.56 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.54 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.36 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.19 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.06 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.01 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.99 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.98 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.88 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.69 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.5 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.24 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.79 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.62 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.51 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.44 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.95 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.53 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.34 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.16 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.93 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.11 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.25 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 90.68 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.65 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 89.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 84.49 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 84.03 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 83.67 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 81.83 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.56 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=430.91 Aligned_cols=488 Identities=41% Similarity=0.673 Sum_probs=441.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHH
Q 039312 21 KPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGS 100 (579)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~ 100 (579)
++..|+...+.+..+.+|++++|++..++..|++..+|.+...+...+..|.+...+.++++++++|-++||++++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCC--CC-CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhh
Q 039312 101 IASLLGMLMMTLTAGIHQLRPSSC--GD-PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQ 177 (579)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (579)
++..+|..++.+....|.++++.| .+ ...|..++..+...++.++.+.++|.|+.+|+..++.+|||++.++.++..
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999999988999999887 22 335888888889999999999999999999999999999999888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHh
Q 039312 178 LESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRK 257 (579)
Q Consensus 178 r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 257 (579)
+.++|+|+|+..++|..++..+..+++++.||.+.|.++.++.++++++++...+.++.+++.+++...+.+|+..+.++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHH
Q 039312 258 RCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIA 337 (579)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 337 (579)
++...+.+.+.......+......++..+++|+++.+.+.+. +++...++|+.|+.+++|+.|..++.+|++...+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~ 348 (571)
T KOG1237|consen 272 RKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTII 348 (571)
T ss_pred HhccCCCcchhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHHHH
Confidence 887766553211011111122334678899999988875442 55666889999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHH
Q 039312 338 CFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417 (579)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~ 417 (579)
++.++.|+.+.++.|+..|++..+.++.+|++.++.+..+..++..|++|++.+|+.||..+++.+++.+.++++|+++.
T Consensus 349 ~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~s 428 (571)
T KOG1237|consen 349 YSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLS 428 (571)
T ss_pred HHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHH
Confidence 99999999999999999999998866999999999999999999999999999999999998777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHH
Q 039312 418 ILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASY 497 (579)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~ 497 (579)
.+++...+.++.+|++.+........+++++|+++||+++|++|.+..++..||.++++|++||+.+++++.+..++|++
T Consensus 429 i~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 429 ILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888866333457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc
Q 039312 498 VSSLVINIIHRVTK 511 (579)
Q Consensus 498 l~~~l~~~v~~~~~ 511 (579)
++..+..++...+.
T Consensus 509 lss~Lv~~v~~~t~ 522 (571)
T KOG1237|consen 509 LSSVLVSLVQFSTG 522 (571)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998877663
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=346.91 Aligned_cols=418 Identities=18% Similarity=0.284 Sum_probs=333.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcC----CchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh
Q 039312 18 SAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYN----LGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF 93 (579)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~----~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~ 93 (579)
.....+|||.++.++.+|++||++|||+...+..|+..+++ ++.+++..+.+.|....++++++|||+|||++|+|
T Consensus 13 ~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 13 EMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 33445689999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChh
Q 039312 94 RTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEK 173 (579)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 173 (579)
++++.|.++..+|.+.++... ..+...++++.+++++|.|.++|++.++++|++|++|+|
T Consensus 93 ~tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 999999999999999998763 013456899999999999999999999999999998865
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCC--CCChhhH-----
Q 039312 174 GRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKP--AGSVFSD----- 246 (579)
Q Consensus 174 ~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----- 246 (579)
|..+++.+|++.|+|+.++|.+.+++.+++||+..|.++++.+..+++.++..+++...... ...+...
T Consensus 153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 57889999999999999999999999999999999999999999998888888766544321 1111110
Q ss_pred ----HHHHHHHHH-HhcccccCCCCCCcccCCccccccccCcccchh-hh----hhcccCCCcccccCCCCCCCccccch
Q 039312 247 ----MAKVVVAAC-RKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCL-DR----AALITEPSHELQEQGTPKNGWRLCSL 316 (579)
Q Consensus 247 ----~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (579)
...++.... ..... . +..+.. .. ....+.. ....|+ +
T Consensus 229 ~~~~~~~~~~~~~~~~~l~------------~---------~~~~~~~~~~~i~~~~~~~~---------~~~~~~---~ 275 (498)
T COG3104 229 VLGGLVVMILAALLTLLLN------------Q---------NTFSGVLLVISILIAIIYFA---------EAFRSP---K 275 (498)
T ss_pred hHHHHHHHHHHHHHHHHHH------------H---------HHHHHHHHHHHHHHHHHHHH---------HHhccC---c
Confidence 000011110 00000 0 000000 00 0000000 001111 1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHh-hhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhh
Q 039312 317 QQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQA-IQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVAT 395 (579)
Q Consensus 317 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~ 395 (579)
.+ +++||++..++++++.++||++++|..+....++ ...+++..| +.+++++++++|++.++++.|+.+++.+|+.+
T Consensus 276 ~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~ 353 (498)
T COG3104 276 VF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353 (498)
T ss_pred cH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhc
Confidence 12 6789999999999999999999999999776665 556666344 88999999999999999999999999777666
Q ss_pred hhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 396 KIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQ 475 (579)
Q Consensus 396 k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~ 475 (579)
+. +.+++..++..|++++..+++.......+. +++...++.+|+++.|+++++||.+++|.+++++++.
T Consensus 354 ~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l 422 (498)
T COG3104 354 GN----KQPSTPIKFALGLILAGLGFLILLLAGIWF-------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKL 422 (498)
T ss_pred CC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhh-------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 53 347899999999999999998888764321 1234567899999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 476 MPESMRTVAGAAFFLSLSVASYVSSLVINI 505 (579)
Q Consensus 476 ~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~ 505 (579)
+|..+.+.++|+|.+.+..|+.++..+.+.
T Consensus 423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 423 APPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 999999999999999999999999888773
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=324.71 Aligned_cols=418 Identities=16% Similarity=0.211 Sum_probs=307.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
++|||.++.+++++++||+++|++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
++.++.+++.++.+ ....++++|+++|+|.|.++|+..++++|+||++++ +|.+.
T Consensus 90 ~~~~g~~~~~~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~ 144 (489)
T PRK10207 90 VLAIGYFMTGMSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGA 144 (489)
T ss_pred HHHHHHHHHHHhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcc
Confidence 99999999988651 123466889999999999999999999999986442 34668
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeec--CCCCChhhH--HHHHH------
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYI--KPAGSVFSD--MAKVV------ 251 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~v~------ 251 (579)
++++|++.|+|.+++|.+++++.++.||++.|+++.+..+++++.+...++...+. ++.+++.+. .....
T Consensus 145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~ 224 (489)
T PRK10207 145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVM 224 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776666665555554433222 222222211 10000
Q ss_pred HHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhH
Q 039312 252 VAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPV 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~ 331 (579)
....... .+.. .. .. +.......+ ....++.+. ...+ ..++++.+..+.+
T Consensus 225 ~~~~~~~-~~~~-~~-~~-~~~~~~~~i---~~~~f~~~~----------------------~~~~-~~~r~r~~~~~~l 274 (489)
T PRK10207 225 IFVCAWL-MHNV-EV-AN-LVLIVLSIV---VTIIFFREA----------------------FKLD-KTGRNKMFVAFVL 274 (489)
T ss_pred HHHHHHH-Hhhh-hH-HH-HHHHHHHHH---HHHHHHHHH----------------------hcCC-HHHHHHHHHHHHH
Confidence 0000000 0000 00 00 000000000 000000000 0001 1234555566667
Q ss_pred HHHHHHHHHhhhccchHHHHHhh-hcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHH
Q 039312 332 CVSGIACFISMDQQNTFGILQAI-QMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRI 410 (579)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i 410 (579)
++..+++|..+.|..+....+.. .++.+..| +.+++++++.+|++..++..|+.+++ .+|+.+|+.++++..++
T Consensus 275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G-~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~~k~ 349 (489)
T PRK10207 275 MLEAVVFYILYAQMPTSLNFFAINNVHHEILG-FSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMPMKF 349 (489)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHhccccccc-eEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcHHHH
Confidence 77788999999998776655554 45665544 66788999999999999999998776 55555555567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHH
Q 039312 411 KTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFL 490 (579)
Q Consensus 411 ~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~ 490 (579)
.+|+++.++++++.+..... .. +.....+.||+++.+++.++||.+.+|..++++++.+|++++|.++|++++
T Consensus 350 ~~G~~l~~~~~~~~~~~~~~---~~----~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 350 TLGMFLCSLGFLTAAAAGMW---FA----DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hc----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999998765433210 00 011135778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 039312 491 SLSVASYVSSLVINII 506 (579)
Q Consensus 491 ~~~ig~~l~~~l~~~v 506 (579)
..++|+.++..+....
T Consensus 423 ~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 423 TQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888655
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.85 Aligned_cols=424 Identities=14% Similarity=0.173 Sum_probs=311.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHh--cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNN--YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVG 99 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~ 99 (579)
.++||.++.+++.+++|++++|++..+++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46789999999999999999999999999999987 9999999999999999999999999999999966999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhh
Q 039312 100 SIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLE 179 (579)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 179 (579)
.++..++.+++.++. +...++++|.+.|+|.|+..|+..++++|+++++++ .+|+
T Consensus 86 ~~~~~~g~~~~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~ 140 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRD 140 (475)
T ss_pred HHHHHHHHHHHHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---cccc
Confidence 999999998888755 455678899999999999999999999999986442 2367
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhH----HHH------
Q 039312 180 SFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSD----MAK------ 249 (579)
Q Consensus 180 ~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------ 249 (579)
++++++|.+.|+|+++||.+++++.++.||++.|+++++..+++++.++..++.+.+.++++++.++ ..+
T Consensus 141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (475)
T TIGR00924 141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALL 220 (475)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHH
Confidence 7899999999999999999999999988999999998876666665555555443322211111110 000
Q ss_pred -HHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhh
Q 039312 250 -VVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAI 328 (579)
Q Consensus 250 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~ 328 (579)
......+......... ..... ..-...+...+.... ..+| ..++ +++++....
T Consensus 221 ~~~~~~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~-------~~~~----~~~~-~~~~~~~~~ 274 (475)
T TIGR00924 221 AALALVFFCAWLMHHVV---------IANIL-----LMTVTLAVIIFFFRL-------AFKP----RLDA-VARNKMYAY 274 (475)
T ss_pred HHHHHHHHHHHHHhccH---------HHHHH-----HHHHHHHHHHHHHHH-------HHhc----cCCH-HHHhHHHHH
Confidence 0000000000000000 00000 000000000000000 0000 0011 223344457
Q ss_pred hhHHHHHHHHHHhhhccchHHH-HHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCch
Q 039312 329 LPVCVSGIACFISMDQQNTFGI-LQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQ 407 (579)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~ 407 (579)
+++++..+++|..|.|+.+... ++...++.+.++ +.+|+++++++|++.+++..|+.+++ .+|+.+|..+++..
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~-~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~~~~ 349 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDPTTP 349 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccc-eEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCCCcH
Confidence 8888999999999999888554 444557776553 77899999999999999999998866 34444443346777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH
Q 039312 408 QRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA 487 (579)
Q Consensus 408 ~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi 487 (579)
.++.+|+++.+++++..++... .. +...+.++||+++++++.++||.+..|..++++++++|+++||+++|+
T Consensus 350 ~k~~~G~~l~~~~~~~~~~~~~----~~----~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~ 421 (475)
T TIGR00924 350 LKFTLGMLFCGASFLTFAASIW----FA----DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM 421 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hc----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 8899999999999988876531 11 112346899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 039312 488 FFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 488 ~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+.+...+|+.+++.+.+...+.
T Consensus 422 ~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 422 WFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=317.15 Aligned_cols=415 Identities=15% Similarity=0.230 Sum_probs=308.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+||+.++.+++.+++|++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999933999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++..... +...++++..+.++|.|...++..++++|+||+++ ++|.+++
T Consensus 86 ~~lg~lll~~~~~---------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~----~~R~sgf 140 (493)
T PRK15462 86 MAIGHVVLGASEI---------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGF 140 (493)
T ss_pred HHHHHHHHHHhhc---------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC----cccccee
Confidence 9999876654320 11234556666778889999999999999999654 2367889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCC-CCChhh--HHHH-----HHHH-
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKP-AGSVFS--DMAK-----VVVA- 253 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----v~~~- 253 (579)
+++|...|+|+.++|.+.+++.+.+||+..|.++++.++++++.++..++...+..+ ..++.. +... +...
T Consensus 141 ~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (493)
T PRK15462 141 SLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLL 220 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998999999999887777776666555444322110 111110 0000 0000
Q ss_pred ----HHHhcccccCCCCCCcccCCccccccccCcccchhhh-h--hcccCCCcccccCCCCCCCccccchhHHHHHHHHH
Q 039312 254 ----ACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDR-A--ALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLI 326 (579)
Q Consensus 254 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~ 326 (579)
............ ...-.... . ....... ....+.+|+|++.
T Consensus 221 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~er~r~~ 268 (493)
T PRK15462 221 VATPALITVLFWKEWS-----------------VYALIVATIIGLGVLAKIY---------------RKAENQKQRKELG 268 (493)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH---------------HhcCCHHHHhhHH
Confidence 000000000000 00000000 0 0000000 0001235688888
Q ss_pred hhhhHHHHHHHHHHhhhccchHHHHH-hhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCC
Q 039312 327 AILPVCVSGIACFISMDQQNTFGILQ-AIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLT 405 (579)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~ 405 (579)
..+++++..++||..|+|..+..... ..++|++..| +.+|+.+++++|++.++++.|+..++ ..|..++++.++
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g-~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~~s 343 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFG-YTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRTVR 343 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcc-eeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCCCC
Confidence 89999999999999999998854444 4778888765 88999999999999999999998887 444433334578
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHH
Q 039312 406 LQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAG 485 (579)
Q Consensus 406 ~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~ 485 (579)
...|+..|+++.+++++++.+.... . ++...++.+|++..|++.++||.+.+|..++.+.+.+|++.||.+|
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~----~----~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~m 415 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARW----S----AMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLT 415 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh----c----CCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence 9999999999999999888765421 0 1112378889999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhh
Q 039312 486 AAFFLSL-SVASYVSSLVINIIH 507 (579)
Q Consensus 486 gi~~~~~-~ig~~l~~~l~~~v~ 507 (579)
|++.+.. .+|+.++..+.....
T Consensus 416 g~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 416 GIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998854 799999888877653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=308.23 Aligned_cols=413 Identities=15% Similarity=0.230 Sum_probs=301.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
++++.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+....+..++++|+++||++|||++++++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999888888888889999999944999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++..++.++.+ +...++++++++|+|.|...|+..++++|++|+++ .++.+++
T Consensus 98 ~~ig~~l~~~~~~---------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~~~ 152 (500)
T PRK09584 98 LAIGYALVAWSGH---------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAF 152 (500)
T ss_pred HHHHHHHHHHhcc---------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhhcc
Confidence 9999888877531 23457788999999999999999999999998643 2245578
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeec--CCCCChhhHH------HHHHHHH
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYI--KPAGSVFSDM------AKVVVAA 254 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~v~~~~ 254 (579)
+++|.+.|+|++++|.+++++.+++||++.|+++++..+++++.+++..+..++. ++..++.+.. ..+....
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALI 232 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHH
Confidence 8999999999999999999999989999999998876666655554443322221 1221221110 0010000
Q ss_pred HH-hcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHH
Q 039312 255 CR-KRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCV 333 (579)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 333 (579)
.. ....+.++. .. ....+........... + .+. .+.+++++.+..+.+++
T Consensus 233 ~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~----------~---~~~-~~~~~~~~~~~~~~~~~ 283 (500)
T PRK09584 233 AIATWLLHNQEI----------AR-----MALGVVALGIVVIFGK----------E---AFA-MKGAARRKMIVAFILML 283 (500)
T ss_pred HHHHHHHhcchH----------HH-----HHHHHHHHHHHHHHHH----------H---Hhh-cCHHHHHHHHHHHHHHH
Confidence 00 000000000 00 0000000000000000 0 000 11234555556677788
Q ss_pred HHHHHHHhhhccchHHHHHhh-hcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHH
Q 039312 334 SGIACFISMDQQNTFGILQAI-QMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKT 412 (579)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~ 412 (579)
..++||..+.|+++....++. .++.+..| +.+++++++.+|++.++++.|+.+++ .+|..+| ++...++.+
T Consensus 284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g-~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~ 355 (500)
T PRK09584 284 EAIIFFVLYSQMPTSLNFFAIRNVEHSILG-IAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAI 355 (500)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhccccccc-eEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHH
Confidence 889999999999997776653 35555543 66789999999999999999999876 4554333 467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHH
Q 039312 413 GIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSL 492 (579)
Q Consensus 413 G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~ 492 (579)
|+++++++++..+....+ . ++...++.+|+++++++.+++|++.+|...+++.+.+|+++||.++|++.+..
T Consensus 356 G~~l~~l~f~~l~~~~~~----~----~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~ 427 (500)
T PRK09584 356 GMVLCSGAFLVLPLGAKF----A----NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTT 427 (500)
T ss_pred HHHHHHHHHHHHHHHHHh----c----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 999999999887765421 1 11234678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 039312 493 SVASYVSSLVINI 505 (579)
Q Consensus 493 ~ig~~l~~~l~~~ 505 (579)
.+|+.++..+...
T Consensus 428 a~g~~~~g~~~~~ 440 (500)
T PRK09584 428 AGAALIAGYVANL 440 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=284.84 Aligned_cols=335 Identities=24% Similarity=0.427 Sum_probs=273.8
Q ss_pred HHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 039312 40 LASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQL 119 (579)
Q Consensus 40 ~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (579)
++|||+...+..|+++.+|++..++..+...+....++.++++|+++|+++||++++.++.++..+|..++++.. .|..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999998888765 2210
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039312 120 RPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199 (579)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~ 199 (579)
. ........+++..+.++|.|+++|+..++.+||+++++ ++.+.++|+++|+++|+|+.+++.+
T Consensus 80 ~-------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i 143 (654)
T TIGR00926 80 G-------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTII 143 (654)
T ss_pred c-------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01234457788899999999999999999999998533 3457899999999999999999999
Q ss_pred Hhhhccc-------cchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccC
Q 039312 200 VVYIQTN-------VSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYD 272 (579)
Q Consensus 200 ~~~l~~~-------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
.+++.++ .+|..+|.++++.++++++++...++++++.++.+++..++.+++..+.+++.......
T Consensus 144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------- 216 (654)
T TIGR00926 144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------- 216 (654)
T ss_pred HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-------
Confidence 9998744 36999999999999999888887777777777777777777777776666542211100
Q ss_pred CccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHH
Q 039312 273 PPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQ 352 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (579)
...+|+|++.... ..+.+++.|++++.+++++..+++|..+.|..+....|
T Consensus 217 ----------~~~~~ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~q 267 (654)
T TIGR00926 217 ----------WPLHWLDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQ 267 (654)
T ss_pred ----------cchhHHHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 1134555442211 12357889999999999999999999999999998999
Q ss_pred hhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 353 AIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRR 431 (579)
Q Consensus 353 ~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~ 431 (579)
+..++.+.++ +.+++++++.++++.++++.|++++.++|..+|... .+++..++.+|++++++++++.+.++.++
T Consensus 268 a~~m~~~l~g-~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 268 ATRMDGDVGG-FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHhcCccCC-EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877654 678999999999999999999999888888877532 36889999999999999999888776544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-26 Score=237.12 Aligned_cols=366 Identities=32% Similarity=0.513 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCCh
Q 039312 93 FRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE 172 (579)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 172 (579)
+|++++|.+++++|.+++.++...+.. .+..+...+++++.+.++|.|+++|++.++++||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~- 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD- 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-
Confidence 488999999999999999888732221 123356789999999999999999999999999999754
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeec-CCCCChhhH-HHHH
Q 039312 173 KGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYI-KPAGSVFSD-MAKV 250 (579)
Q Consensus 173 ~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v 250 (579)
++++.++|+++|+++|+|+.+++.+.+++.+++||.+.|.++++.++++++.++..++++.+. ++.+++..+ ...+
T Consensus 67 --~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~ 144 (372)
T PF00854_consen 67 --DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLV 144 (372)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHH
T ss_pred --hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHH
Confidence 356789999999999999999999999999999999999999999999999998888888776 566666666 3333
Q ss_pred HHHHHHhcccccCCCCCCcccCCccc-cccccCcccchhhhhhcccCCCcccccCCCCCCCccc-cchhHHHHHHHHHhh
Q 039312 251 VVAACRKRCFSVEPGCEHNYYDPPLM-IKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRL-CSLQQVEQLKCLIAI 328 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~k~~~~~ 328 (579)
.....+++....+... ...+..... ++....+.....+ +....... ...|.. +..+++++.|...+.
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~~~ 213 (372)
T PF00854_consen 145 LVAAFKKRKLAVPKGS-SWLDWALFQYSERSIFGIIVFIR-AAVIFFPE---------IFFWALFCQVQRVEELKALIRF 213 (372)
T ss_dssp HHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCCCCCCHHH-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHHCH
T ss_pred HHHHHHHhhcccccch-HHHHHhhhhhhhhhhhhhhhhcc-chhhhhhh---------hhhcccCCccceeeeeeeeeec
Confidence 4444444433222110 000000000 0000000000001 00000000 001110 223456666777778
Q ss_pred hhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchH
Q 039312 329 LPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQ 408 (579)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~ 408 (579)
++.+.+.+.+...+.+.......|...++...++.+.+|+++++++|++.++++.|++|++.+|+.++ ++.++...
T Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~ 289 (372)
T PF00854_consen 214 LPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQ 289 (372)
T ss_dssp HHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HH
T ss_pred cccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhh
Confidence 88888888888888887777777777777666544779999999999999999999999999998882 23468899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHH
Q 039312 409 RIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAF 488 (579)
Q Consensus 409 ~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~ 488 (579)
++.+|++++.++++..+.++.+|......++ ..+.+|+++.+++..++|.+..+.+.+..+|.+|++..+.++|++
T Consensus 290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~ 365 (372)
T PF00854_consen 290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG----KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIW 365 (372)
T ss_dssp HHHHH-HHHHHHHHTTTHHHH---HH----T----T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccccC----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHH
Confidence 9999999999999988888876654443332 234467789999999999999999999888888888888888887
Q ss_pred HHHHH
Q 039312 489 FLSLS 493 (579)
Q Consensus 489 ~~~~~ 493 (579)
+....
T Consensus 366 ~~~~~ 370 (372)
T PF00854_consen 366 FALSA 370 (372)
T ss_dssp HHHH-
T ss_pred HHHhc
Confidence 76654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=215.37 Aligned_cols=354 Identities=13% Similarity=0.087 Sum_probs=232.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+.+|+++.++.+.++...+.+.+..+++.|+++++|++..+.+++.+.+.+++.+..++.|+++|| +|||++++++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHH
Confidence 346778888889999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.++. +++.+++++.+.+.+.+...+...+...|.+++ ++|++++
T Consensus 83 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 134 (395)
T PRK10054 83 FASGFIAIPLVN----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS------TSKTKIF 134 (395)
T ss_pred HHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------hHHHHHH
Confidence 888888777765 556677778888887777788888888888873 4467889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (579)
++.+...++|.+++|.+++++.. .+|+.+|++.++..+++++...+..++...+++++++ +. .
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~----------~---- 197 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--SV----------W---- 197 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--hh----------h----
Confidence 99999999999999999998875 6899999988776666544333322221111000000 00 0
Q ss_pred CCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhh-hhHHHHHHHHHHh
Q 039312 263 EPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAI-LPVCVSGIACFIS 341 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~ 341 (579)
+.. +...+ |.+... +..++....+. .
T Consensus 198 --------------------------~~~-------------------------~~~~~-~~~~~~~~~~~l~~~~~~-~ 224 (395)
T PRK10054 198 --------------------------SPS-------------------------VLLQD-KALLWFTCSGFLASFVSG-A 224 (395)
T ss_pred --------------------------hhh-------------------------hhccC-ceehHHHHHHHHHHHHHH-H
Confidence 000 00000 111111 11111111111 1
Q ss_pred hhccchHHHHHhhhcCCCCCCccccChhh---HHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 039312 342 MDQQNTFGILQAIQMNKSVGPHFKMPPAW---MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~ 418 (579)
+......+. ..... .+ .+... +...+.+..+...+..+++ .+|. ++...+..|+++.+
T Consensus 225 ~~~~~~~~~---~~~~~-~~----~~~~~~g~~~~~~~~~~~~~~~~~g~~----~~~~-------~~~~~l~~~~~~~~ 285 (395)
T PRK10054 225 FASCISQYV---MVVAD-SD----FAEKVVAVVLPVNAAMVVSLQYSVGRR----LNAA-------NIRPLMTAGTLCFV 285 (395)
T ss_pred hhhhHHHHH---HHhcc-cc----hHHHHHHHHHHhhhhheeeehhHHHHH----HccC-------CchhHHHHHHHHHH
Confidence 111111111 11111 11 22222 2223332222222332222 3332 33456666776666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHH
Q 039312 419 LCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYV 498 (579)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l 498 (579)
++.+...... .+++.+.+..++.++++....|.....+.+.+|++.|+++.+..+ ..++|..+
T Consensus 286 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~ 348 (395)
T PRK10054 286 IGLVGFIFSG----------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI 348 (395)
T ss_pred HHHHHHHHcc----------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH
Confidence 6665544321 133444556789999999999999999999999999999988765 56689999
Q ss_pred HHHHHHHhhcccc
Q 039312 499 SSLVINIIHRVTK 511 (579)
Q Consensus 499 ~~~l~~~v~~~~~ 511 (579)
||.+.+.+.+..+
T Consensus 349 Gp~~~G~l~~~~g 361 (395)
T PRK10054 349 NPLVSGVILTTLP 361 (395)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988763
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=211.20 Aligned_cols=349 Identities=13% Similarity=0.148 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGML 108 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~ 108 (579)
+.++...++..++.+.+.++++.|+++++|+|..+.|.+.+...+...+..+++|+++|| +|||++++++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999999999999999999999999999999999999 8999999999999999888
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHH
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS 188 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 188 (579)
.+.+.. +.+.+++.|+++|++.+...|...+++.|.+|+ ++|++++++.+..
T Consensus 92 ~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~ 143 (400)
T PRK11646 92 TMAIAH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP------HQRGRFFSLLMMQ 143 (400)
T ss_pred HHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHH
Confidence 887755 567788999999999998889889999999884 4567889999999
Q ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCC
Q 039312 189 FTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEH 268 (579)
Q Consensus 189 ~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (579)
.++|..+||.+++++. .+||++.|++.++..+++.++.....++... ++..++..+
T Consensus 144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~---------------------- 199 (400)
T PRK11646 144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVRE---------------------- 199 (400)
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhHH----------------------
Confidence 9999999999999998 6799999998776655443333322222100 000000000
Q ss_pred cccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchH
Q 039312 269 NYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTF 348 (579)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (579)
.|+ +...+ +.+... ......++..+.+....
T Consensus 200 -----------------------------------------~~~----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 230 (400)
T PRK11646 200 -----------------------------------------GMT----RVLRD-KRFVTY---VLTLTGYYMLAVQVMLM 230 (400)
T ss_pred -----------------------------------------HHH----HHHcC-chHHHH---HHHHHHHHHHHHHHHHh
Confidence 000 00001 111111 11111112111111111
Q ss_pred HHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 039312 349 GILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVE 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~ 428 (579)
.... +....+ .....+.+..+..+..+.......++ ..|+ ....+.+..++++.+++.+..+..+
T Consensus 231 ~p~~---~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~~~----~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
T PRK11646 231 LPIM---VNDIAG--SPSAVKWMYAIEACLSLTLLYPIARW----SEKR------FRLEHRLMAGLLIMSLSMFPIGMVS 295 (400)
T ss_pred hhhh---HHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHH----HHHh------cchhHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 111110 00112222333333222222222222 2221 1223456667777777765555443
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+.++++...++.+++.....|...+++.+.+|++.||+++|+.++..++|..+|+.+.+.+.+
T Consensus 296 -----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 296 -----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 233344455677888888889999999999999999999999999999999999999999987
Q ss_pred ccc
Q 039312 509 VTK 511 (579)
Q Consensus 509 ~~~ 511 (579)
..+
T Consensus 359 ~~~ 361 (400)
T PRK11646 359 LGK 361 (400)
T ss_pred HHh
Confidence 753
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=206.43 Aligned_cols=351 Identities=14% Similarity=0.051 Sum_probs=229.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.+.+..+.+..+...++.......++.|+.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 4566667777788788877788889999999999999999999999999999999999999999 899999999998888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+.++..... ....+...+++.|+++|++.+...+...+++.|.+++ ++|+++.++
T Consensus 93 ~~~~~~~~~~~~~~--------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~ 152 (399)
T PRK05122 93 LSGLLYLLAGLLAA--------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA------LHTGRVISW 152 (399)
T ss_pred HHHHHHHHhhhhhc--------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh------hhhccchhh
Confidence 87776655431100 0012466789999999999999999998988999874 345677888
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCC
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEP 264 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (579)
+..+.++|..+++.+++++.+..||+..+++.++..++.+... ...+ +.++.+++
T Consensus 153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~--------------------- 207 (399)
T PRK05122 153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRP---AVPPVKGE--------------------- 207 (399)
T ss_pred hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCC---CCCCCCcc---------------------
Confidence 8888899999999999999888999998877665443332221 1111 00000000
Q ss_pred CCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhh-hHHHHHHHHHHhhh
Q 039312 265 GCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAIL-PVCVSGIACFISMD 343 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~ 343 (579)
..++ .+..|...... ...+....+... .
T Consensus 208 -------------------------------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (399)
T PRK05122 208 -------------------------------------------RLPF-------RRVLGRVWPYGMGLALASIGFGTI-A 236 (399)
T ss_pred -------------------------------------------chhH-------HHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0000 00011111111 111111111111 1
Q ss_pred ccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 039312 344 QQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLV 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~ 423 (579)
.+...+. +..+. + ..........++.++..++.+++ .+|+. +.+.+..+.++.+++.+.
T Consensus 237 ~~~~~~~-~~~~~--~-------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~~~~~~~~~~~~~~~ 295 (399)
T PRK05122 237 TFITLYY-AARGW--D-------GAALALTLFGVAFVGARLLFGNL----INRLG-------GLRVAIVSLLVEILGLLL 295 (399)
T ss_pred HHHHHHH-HHccc--c-------cchHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHHHHHH
Confidence 1111111 11111 0 11222233444445555555554 33432 224555666666666555
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 424 AGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVI 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~ 503 (579)
..... +.+.+++..++.+++.....|.......+..|++.||++.|+++....+|..+++.+.
T Consensus 296 ~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 296 LWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 3444556678888888888888888888999999999999999999999999999988
Q ss_pred HHhhccc
Q 039312 504 NIIHRVT 510 (579)
Q Consensus 504 ~~v~~~~ 510 (579)
+.+.+..
T Consensus 359 g~l~~~~ 365 (399)
T PRK05122 359 GLVASWF 365 (399)
T ss_pred HHHHHHc
Confidence 8887654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=206.97 Aligned_cols=360 Identities=14% Similarity=0.056 Sum_probs=228.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
.+|..+..+++..+++....+...... +.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence 445556666667777766666554544 45567899999999999999999999999999999999 8999999999888
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.++. ++..+++.|++.|++.+...+...+++.|.+++ ++|++++
T Consensus 90 ~~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~ 141 (406)
T PRK11551 90 FGLFSLATAQAW----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP------RLRGTAV 141 (406)
T ss_pred HHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH------HHHHHHH
Confidence 888877777665 567788999999999999999999999999983 4578889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (579)
++++.+.++|..+++.+++.+.+..+|+..|++.++..++...+.....++..+..++.+.
T Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------- 202 (406)
T PRK11551 142 SLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA------------------- 202 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-------------------
Confidence 9988899999999999988888888999999887665444433333222221110000000
Q ss_pred CCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 039312 263 EPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISM 342 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 342 (579)
.+. .....+.. + . ..+..+........+.....++...
T Consensus 203 ~~~------------------~~~~~~~~-------------------~---~--~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (406)
T PRK11551 203 GKQ------------------RAPVLRAL-------------------F---G--EGRATATLLLWISYFFTLIVLYFLL 240 (406)
T ss_pred chh------------------hhhhHHHH-------------------h---h--hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000 0 0 0000111100111111111111111
Q ss_pred hccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 039312 343 DQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCML 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l 422 (579)
...+ .+ .+..+++. ...+.+.....+..++...+..++.+++.+| +.+..+.+...++++
T Consensus 241 ~~~p-~~-~~~~g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 241 NWLP-SL-LVGQGLSR-------SQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLA 300 (406)
T ss_pred HHHH-HH-HHhCCCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHH
Confidence 1111 11 11112111 1223444445555566666666664433222 333334444444443
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 039312 423 VAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLV 502 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l 502 (579)
...... +.+.+....++.+++.....+..+.+..+..|.+.|++++|+.+....+|..+++.+
T Consensus 301 ~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~ 363 (406)
T PRK11551 301 ALAAAP-----------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL 363 (406)
T ss_pred HHHhcC-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh
Confidence 333221 333444556677777777788889999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 039312 503 INIIHRVT 510 (579)
Q Consensus 503 ~~~v~~~~ 510 (579)
.+.+.+..
T Consensus 364 ~g~l~~~~ 371 (406)
T PRK11551 364 AGQLLALG 371 (406)
T ss_pred HhhhhccC
Confidence 99887653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=210.69 Aligned_cols=400 Identities=13% Similarity=0.068 Sum_probs=237.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+..+.+..++..+-.- +.....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++
T Consensus 7 ~~~~~~~~~~~~~ld~t-iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDAT-VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 33334444444444443 34444556678999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.+++.++. +.+.++++|+++|+|.++..|.....+.+.+++ .++|+++++++.
T Consensus 85 ~~~~~~a~----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-----~~~r~~~~g~~~ 137 (495)
T PRK14995 85 SLAAAFSP----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTE-----EKQRNMALGVWA 137 (495)
T ss_pred HHHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 99999876 677899999999999999888878778787753 245788899999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHH------HHHHHHHhccc
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAK------VVVAACRKRCF 260 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~ 260 (579)
...++|..+||.+++++.++.|||+.|++.....++.+++.....|+..+++.++.+...... ......++. .
T Consensus 138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~-~ 216 (495)
T PRK14995 138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTA-L 216 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhc-c
Confidence 999999999999999999999999999998776565554444443432211111111111100 000111110 0
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
+.. +.... -+.. -.....-.......+. + ..+|... .+...+ +.+.............+.
T Consensus 217 ~~~-------~~~~~--~~~~-~~~~~~~l~~f~~~e~----~---~~~p~~~--~~lf~~-~~~~~~~~~~~~~~~~~~ 276 (495)
T PRK14995 217 KGF-------LSLWV--TSLT-LLTGALLLGLFIRTQL----A---ASRPMID--MRLFTH-RIILSGVVMAMTAMITLV 276 (495)
T ss_pred ccC-------CchHH--HHHH-HHHHHHHHHHHHHHHh----c---CCCCCcC--HHHhCC-cccHHHHHHHHHHHHHHH
Confidence 000 00000 0000 0000000000000000 0 0111100 000000 111111111101100010
Q ss_pred hhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILC 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~ 420 (579)
.+......+.++..+.+. ...+.+.....+...+..++.+++ .+|+. +.+.+..|+++.+++
T Consensus 277 ~~~~~~~~~lq~v~g~s~-------~~ag~~~~~~~~~~~~~~~~~g~l----~~r~g-------~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 277 GFELLMAQELQFVHGLSP-------LEAGMFMLPVMVASGFSGPIAGIL----VSRLG-------LRLVATGGMALSALS 338 (495)
T ss_pred HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHH
Confidence 111111111111122211 123344444555666666776665 44542 224566677777766
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 039312 421 MLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSS 500 (579)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~ 500 (579)
.+...... ...+.+......++.+++.+...+.....+.+..|++.++.+.+++++...+|+.+|+
T Consensus 339 ~~~l~~~~--------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ 404 (495)
T PRK14995 339 FYGLAMTD--------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGI 404 (495)
T ss_pred HHHHHHhc--------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHH
Confidence 65544332 0123344556778889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 039312 501 LVINIIHR 508 (579)
Q Consensus 501 ~l~~~v~~ 508 (579)
.+.+.+.+
T Consensus 405 ai~g~i~~ 412 (495)
T PRK14995 405 AIFGLLLS 412 (495)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=204.39 Aligned_cols=349 Identities=12% Similarity=0.071 Sum_probs=223.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
|..++.+.+..++.....|.. ..+.+.+.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVP-VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHH-HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence 444555555555544444433 333456788999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+.++. +++.++++|+++|++.+...+...+++.|++|+ ++|++++++
T Consensus 86 ~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~g~ 137 (390)
T PRK03545 86 ASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA------GKKAQALSL 137 (390)
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------hhhhhHHHH
Confidence 9998888876 678899999999999998889989999999984 446788899
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCC
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEP 264 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (579)
+..+.++|..++|.+++.+.+..|||+.|++.++..++.....+...|+..+ ++.++..+ .
T Consensus 138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~----~------------- 198 (390)
T PRK03545 138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--EHSGSLKS----L------------- 198 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCcchHHH----H-------------
Confidence 8889999999999999999888899999998877655544433332222110 00000000 0
Q ss_pred CCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh-hhhHHHHHHHHHHhhh
Q 039312 265 GCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA-ILPVCVSGIACFISMD 343 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~ 343 (579)
. +...+ +.+.. ....+......+..+.
T Consensus 199 -----------------------~----------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T PRK03545 199 -----------------------P----------------------------LLFRR-PALVSLYLLTVVVVTAHFTAYS 226 (390)
T ss_pred -----------------------H----------------------------HHHhC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 11111 1111111111111111
Q ss_pred ccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 039312 344 QQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLV 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~ 423 (579)
.... +.....+++. ...+.+.....+..++..++.+++ .+|+. + +.+..+..+..++...
T Consensus 227 ~~~~-~l~~~~g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l----~dr~~-------~-~~~~~~~~~~~~~~~~ 286 (390)
T PRK03545 227 YIEP-FVQQVAGLSE-------NFATLLLLLFGGAGIIGSVLFSRL----GNRHP-------S-GFLLIAIALLLVCLLL 286 (390)
T ss_pred HHHH-HHHHhcCCCc-------cHHHHHHHHHHHHHHHHHHHHHHH----hhccc-------h-hHHHHHHHHHHHHHHH
Confidence 1111 1111111111 112233344444555555555554 33321 1 2344444444444433
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 424 AGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVI 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~ 503 (579)
..... .+.+.+++..++.+++.....+.....+.+..| +.|+.++|+++....+|..+|+.+.
T Consensus 287 l~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 287 LLPAA----------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred HHHHh----------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 134455666777888887777888888888888 4789999999999999999999999
Q ss_pred HHhhcccc
Q 039312 504 NIIHRVTK 511 (579)
Q Consensus 504 ~~v~~~~~ 511 (579)
+.+.+..+
T Consensus 350 G~~~~~~g 357 (390)
T PRK03545 350 NQVSLHLG 357 (390)
T ss_pred HHHHhccC
Confidence 99887653
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-21 Score=203.17 Aligned_cols=350 Identities=12% Similarity=0.093 Sum_probs=224.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++.+.+..++...+.....+.++.|+.+++|+|..+.+++.+.+.+...++.++.|+++|| +||||+++++.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHH
Confidence 555666666677777777777888889999999999999999999999999999999999999 8999999998887776
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+.+...+....+. ....++..++++|+++|++.+...+...+++.|.+|+ ++|+++++++
T Consensus 94 ~~~~~~~~~~~~~--------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~a~~~~ 153 (392)
T PRK12382 94 AGLAYLLAAILPV--------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP------KHSGKVMSWN 153 (392)
T ss_pred HHHHHHhhhcccc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc------cccchhhhHH
Confidence 6544333221111 0012677899999999999999888888888998884 3467788888
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCC
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPG 265 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (579)
..+.++|..++|.+++++.+.+||+..+.+..+..++.+ .... +.++.+++++. +
T Consensus 154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~---------------------~ 208 (392)
T PRK12382 154 GMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHAGE---------------------R 208 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCccc---------------------C
Confidence 888899999999999999888899987765543322221 1111 11110000000 0
Q ss_pred CCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhh-hhHHHHHHHHHHhhhc
Q 039312 266 CEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAI-LPVCVSGIACFISMDQ 344 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~ 344 (579)
.++ .+..|..... ....+....+.... .
T Consensus 209 -------------------------------------------~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~-~ 237 (392)
T PRK12382 209 -------------------------------------------PSL-------WSVVGLIWKPGLGLALQGVGFAVIG-T 237 (392)
T ss_pred -------------------------------------------chH-------HHHHHHHHHhHHHHHHHHHHHhHHH-H
Confidence 000 0001111110 01111111111111 1
Q ss_pred cchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 039312 345 QNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVA 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~ 424 (579)
+...+. +..+ . ...........+..++..++.+++ .+|+.+ .+.+..+..+.+++.+..
T Consensus 238 ~~~~~~-~~~~----~-----~~~~~~~~~~~~~~~~~~~~~g~l----~~r~g~-------~~~~~~~~~~~~~~~~~~ 296 (392)
T PRK12382 238 FVSLYF-ASKG----W-----AMAGFTLTAFGGAFVLMRVLFGWM----PDRFGG-------VKVAIVSLLVETVGLLLL 296 (392)
T ss_pred HHHHHH-HhcC----C-----chhHHHHHHHHHHHHHHHHHHHHH----HHhcCC-------CeehHHHHHHHHHHHHHH
Confidence 111111 1111 0 012222233444445555666555 444322 244555666666665554
Q ss_pred HHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 425 GSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVIN 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~ 504 (579)
.... +.+++.+..++.+++.....|.......+.+|++.||++.|+++....+|+.+++.+.+
T Consensus 297 ~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 297 WLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 33445556778888888888888888899999999999999999999999999999999
Q ss_pred Hhhccc
Q 039312 505 IIHRVT 510 (579)
Q Consensus 505 ~v~~~~ 510 (579)
.+.+..
T Consensus 360 ~l~~~~ 365 (392)
T PRK12382 360 MLATSF 365 (392)
T ss_pred HHHHHh
Confidence 887754
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=211.48 Aligned_cols=354 Identities=12% Similarity=0.037 Sum_probs=210.5
Q ss_pred HHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 039312 50 TVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPH 129 (579)
Q Consensus 50 ~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (579)
...+.+++|.+..+.+++.+.+.....++.+++|+++|| +|||++++.+.++..++.+++.++.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 345678999999999999999999999999999999999 8999999999988888888887765
Q ss_pred CCCCCchhHHHHH-HHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 039312 130 CPQPQGWQFCVLF-AALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVS 208 (579)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g 208 (579)
+.+.++ ..|++.|++.+...+...+++.++++ ++|+++.++.+.+.++|..++|.+++++.+.+|
T Consensus 106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 444454 45688899998766666777888875 236788899888999999999999999988899
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchh
Q 039312 209 WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCL 288 (579)
Q Consensus 209 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 288 (579)
||++|++.++..+++.+..++..+....++....+.+ ... .++.. . .+. +.....
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~------~---~~~---~~~~~~ 226 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-----------EGL--PPDGS------T---KKL---SKKSTA 226 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-----------ccC--CCCCc------c---ccc---cccchh
Confidence 9999999887666554444433322110000000000 000 00000 0 000 000000
Q ss_pred hhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccCh
Q 039312 289 DRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPP 368 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 368 (579)
++ ..++... +...+ +.+. .......+....+....+....+... .... ....
T Consensus 227 ~~-----------------~~~~~~~--~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s---~~~~ 278 (455)
T TIGR00892 227 EK-----------------INRFLDF--SLFTH-RGFL---VYLSGNVIMFLGFFAPIIFLVPYAKD--KGVD---EYEA 278 (455)
T ss_pred hh-----------------hhhhcch--HHhcC-chHH---HHHHHHHHHHHHccchHHHHHHHHHH--cCCC---HHHH
Confidence 00 0000000 00000 1111 11111111111111111111111111 1110 0122
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchH
Q 039312 369 AWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLL 448 (579)
Q Consensus 369 ~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (579)
+.+..+..+..++..|+..++.+ |...+ ..+...+..++++.+++.+...... +.+
T Consensus 279 g~~~~~~~~~~~~~~~~~g~l~d----~~~~~---~~~~~~~~~~~~~~~l~~ll~~~~~-----------------~~~ 334 (455)
T TIGR00892 279 AFLLSIIGFVDIFARPSCGLIAG----LKWIR---PHVQYLFSFALLFNGLTHLLCALAG-----------------DYT 334 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----ccccC---HHHHHHHHHHHHHHHHHHHHHHHhc-----------------hHH
Confidence 34444455555666666665533 21000 0112223333444334433333222 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 449 TLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 449 ~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
+++...++.+++.....+...+.+.+.+|++.+++.+|+++...++|+.+++.+.+.+.+..
T Consensus 335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 55666778888888888999999999999999999999999999999999999999887654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-21 Score=204.83 Aligned_cols=178 Identities=11% Similarity=0.058 Sum_probs=148.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.+.++.+.+..++..+..+.+...++.+. +++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 34567777777887777777777776665 5799999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+.++. +...++++|+++|++.+...|...+++.|.+|+ ++|+++++.
T Consensus 87 ~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 138 (471)
T PRK10504 87 LGSLFCALSG----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR------EQYMAAMTF 138 (471)
T ss_pred HHHHHHHHhC----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH------HHHHHHHHH
Confidence 8887776654 566788999999999999999999999999883 456788899
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
.+.+.++|..++|.+++++.+..||++.|++......++.+......+
T Consensus 139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999899999999887665555444444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=198.99 Aligned_cols=356 Identities=12% Similarity=0.063 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHH
Q 039312 31 ILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMM 110 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~ 110 (579)
.+...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666654 589999999999999999999999999999999 899999999988888877777
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (579)
.+....+ ..+.+.++++|++.|++.+...+...++++|.+|+ ++|++.+++.+.+.+
T Consensus 82 ~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 138 (365)
T TIGR00900 82 PFVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE------EQLTQANSLSQAVRS 138 (365)
T ss_pred HHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHhHHHHHHH
Confidence 6654111 12567789999999999999999999999999984 457888999999999
Q ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcc
Q 039312 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNY 270 (579)
Q Consensus 191 ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (579)
+|..++|.+++++.+..||++.|++.++..+++.+..+..+.+..++ ++.++.++.
T Consensus 139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------- 194 (365)
T TIGR00900 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNA----------------------- 194 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchh-----------------------
Confidence 99999999999998888999999887766555544433322111100 000000000
Q ss_pred cCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhh----ccc
Q 039312 271 YDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMD----QQN 346 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~ 346 (579)
..+.. ...++ ..-..+.+.. .......+...+. ...
T Consensus 195 ----------------~~~~~----------------~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 195 ----------------VLRDT----------------REGIK-----FVLKNPLLRT---LLLLALLFNLVFAPAIVALF 234 (365)
T ss_pred ----------------HHHHH----------------HhHHH-----HHHcCcHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 00000 00000 0000011111 1111111111111 111
Q ss_pred hHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 039312 347 TFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGS 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~ 426 (579)
..+..+..+.+. ...+.+.....++.++..++..++ .+|. .+.+.+..+.++.+++.+....
T Consensus 235 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 296 (365)
T TIGR00900 235 PYVQSKYLGRGS-------THYGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGL 296 (365)
T ss_pred HHHHHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHh
Confidence 111111111111 112334444555555555655544 3442 2224455555555555554444
Q ss_pred HHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039312 427 VEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINII 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v 506 (579)
.. + +.+.+.+..++.+++.....+...++..+..|++.|+++.|+.+....++..+++.+.+.+
T Consensus 297 ~~---------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 297 TP---------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred hc---------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1 2455666778889999999999999999999999999999999999999999999999988
Q ss_pred hcc
Q 039312 507 HRV 509 (579)
Q Consensus 507 ~~~ 509 (579)
.+.
T Consensus 361 ~~~ 363 (365)
T TIGR00900 361 ADH 363 (365)
T ss_pred HHH
Confidence 764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=206.96 Aligned_cols=356 Identities=11% Similarity=0.011 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
....+...++..++.......++.+ .++++.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHH
Confidence 3344444555555554444555555 45678899999999999999999999999999999 899999998888777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.++......+ ..+++.+++.|++.|++.+...+...+++.|.+++ ++|+++.++.+.
T Consensus 97 ~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 153 (417)
T PRK10489 97 IGLALNAFLP-----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR------ENLMQAGAITML 153 (417)
T ss_pred HHHHHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH------HHHHHHHHHHHH
Confidence 6654321000 11466788899999999888888888888898873 446777888888
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecC-CCCChhhHHHHHHHHHHHhcccccCCCC
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIK-PAGSVFSDMAKVVVAACRKRCFSVEPGC 266 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (579)
+.++|..+||.+++++.+..+|++.|++.++..+++.+..+.. ++...++ +++++..+.
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~------------------- 213 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSL------------------- 213 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHH-------------------
Confidence 8999999999999998887899999988776655554433322 2111000 000000000
Q ss_pred CCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 039312 267 EHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQN 346 (579)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 346 (579)
.+ .+ ...-..+.+ ... ++..... .......
T Consensus 214 ---------------------~~--------------------~~-----~~~~~~~~~-~~~--~~~~~~~-~~~~~~~ 243 (417)
T PRK10489 214 ---------------------LA--------------------GF-----RFLLASPVV-GGI--ALLGGLL-TMASAVR 243 (417)
T ss_pred ---------------------HH--------------------HH-----HHHHcChHH-HHH--HHHHHHH-HHHHhHH
Confidence 00 00 000000111 111 1111111 1111111
Q ss_pred hHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 039312 347 TFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGS 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~ 426 (579)
...... .....+. -....+.+.....++.++...+.+++ .+|. ++.+.+..+.++.+++++....
T Consensus 244 ~~~p~~---~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 244 VLYPAL---ADEVWQM-GAAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred HhhHHH---HHhccCC-ChhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHc
Confidence 111111 1111110 00112344444555555555555444 2221 2223455566666666554443
Q ss_pred HHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039312 427 VEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINII 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v 506 (579)
.. +++.+....++.+++.....+....++.+..|++.||+++|+++....+|..+|+.+.+.+
T Consensus 309 ~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 309 MP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred cc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 32 3444555667778888887788889999999999999999999999999999999999998
Q ss_pred hccc
Q 039312 507 HRVT 510 (579)
Q Consensus 507 ~~~~ 510 (579)
.+..
T Consensus 372 ~~~~ 375 (417)
T PRK10489 372 GAMM 375 (417)
T ss_pred HHHh
Confidence 8764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=191.29 Aligned_cols=360 Identities=14% Similarity=0.112 Sum_probs=245.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
+..|..++.+.+..|+...+=|.... +.+-+.+++|.|..++|..++.|..+..++.++...++|| +-||++++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 34466677777777777666665544 4466688999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
++.++.++++++. ++..+.++|++.|+..|.+++...+..++..|+ ++|+++
T Consensus 87 lFi~~n~l~alAp----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp------~~~~~A 138 (394)
T COG2814 87 LFIVSNLLSALAP----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP------GKRGRA 138 (394)
T ss_pred HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc------cchhhH
Confidence 9999999999998 788999999999999999999999999999995 557889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccc-eeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRR-CYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
.+....+..++..+|..++.++.+.+|||..|++.+...+++++..+...| +... +..+.+..+..
T Consensus 139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~-~~~~~~~~~~~------------ 205 (394)
T COG2814 139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEIS-GSLPGPLRTLL------------ 205 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCC-CCCCcchhHHH------------
Confidence 999999999999999999999999999999999988877777666666555 1100 00001100000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
+.+++ .+........++.....+.
T Consensus 206 -------------------------~~l~~-------------------------------p~v~~~l~~t~l~~~g~F~ 229 (394)
T COG2814 206 -------------------------RLLRR-------------------------------PGVLLGLLATFLFMTGHFA 229 (394)
T ss_pred -------------------------HHhcC-------------------------------chHHHHHHHHHHHHcchhh
Confidence 00000 0011111122222222233
Q ss_pred hhhccchHHHHHhhhcCCCCCCccc-cChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFK-MPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSIL 419 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~ 419 (579)
.|.+ ....+....+ +. ....++.....++.++...+.+++.|+ +..+.+.....+.++
T Consensus 230 ~ftY-------i~P~L~~v~g--~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------------~~~~~l~~~~~l~a~ 288 (394)
T COG2814 230 LYTY-------IRPFLESVAG--FSVSAVSLVLLAFGIAGFIGNLLGGRLADR------------GPRRALIAALLLLAL 288 (394)
T ss_pred hHHh-------HHHHHHHccC--CCHhHHHHHHHHHHHHHHHHHHHHhhhccc------------cchhHHHHHHHHHHH
Confidence 3322 2222222111 11 123345556777777888887776433 233455555566666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHH
Q 039312 420 CMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVS 499 (579)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~ 499 (579)
.++.+.+.. .+.+..+...++.+++.....+..+....+.+| +.++.+++++....++|..+|
T Consensus 289 ~~l~l~~~~----------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~G 351 (394)
T COG2814 289 ALLALTFTG----------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALG 351 (394)
T ss_pred HHHHHHHhc----------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHH
Confidence 666655543 233444444555555555555555555555444 559999999999999999999
Q ss_pred HHHHHHhhccccccCCcChH
Q 039312 500 SLVINIIHRVTKRTGNSPWL 519 (579)
Q Consensus 500 ~~l~~~v~~~~~~~~~~~w~ 519 (579)
..+++.+.+..+ .....|.
T Consensus 352 A~lGG~v~~~~g-~~~~~~~ 370 (394)
T COG2814 352 AALGGLVLDALG-YAATGWV 370 (394)
T ss_pred HHHHHHHHHhhc-hHHHHHH
Confidence 999999887732 2233455
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-21 Score=199.64 Aligned_cols=174 Identities=14% Similarity=0.163 Sum_probs=146.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHH
Q 039312 20 KKPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVG 99 (579)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~ 99 (579)
+.+.+|+.+..+.+..++..+..+.+.... +.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHH
Confidence 345667777777778888877777655554 56678999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhh
Q 039312 100 SIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLE 179 (579)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 179 (579)
.++..++.+++.++. ++..++++|++.|++.+...+...+++.|.+++ ++|+
T Consensus 84 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~~~ 135 (405)
T TIGR00891 84 IVLFSAGTLACGFAP----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK------HLRN 135 (405)
T ss_pred HHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh------hhhh
Confidence 999989888887765 567789999999999999999999999999984 4467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHHH
Q 039312 180 SFFNWWYFSFTVALVVVLTGVVYIQTNVS--WVLGFAIPTACLAFS 223 (579)
Q Consensus 180 ~~~~~~~~~~~ig~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~ 223 (579)
++.++++.+.++|..+++.+++.+.+..+ |++.|++.++..++.
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 78888888999999999999888877655 999998766544444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-20 Score=194.95 Aligned_cols=173 Identities=13% Similarity=0.151 Sum_probs=145.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHH
Q 039312 21 KPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGS 100 (579)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~ 100 (579)
.|..|+.+..+.+..++.....|.....++. +.+++|++..+.++..+.+..+..++.++.|+++|| +|||++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHH
Confidence 3456776666666665555566655555555 567899999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhh
Q 039312 101 IASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLES 180 (579)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 180 (579)
++..++.+++.++. +++.+++.|+++|++.|...|...+++.|++|+ ++|++
T Consensus 93 ~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~------~~~~~ 144 (394)
T PRK10213 93 VLLTLSCLLVSFAN----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP------RTVPK 144 (394)
T ss_pred HHHHHHHHHHHHHC----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH------hHHHH
Confidence 99999888887765 678899999999999999999999999999984 44677
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 181 FFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 181 ~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
+.++...+.++|..++|.+++++.+.+||++.|++.++..+++
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~ 187 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLC 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999899999999877554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-20 Score=202.18 Aligned_cols=168 Identities=14% Similarity=0.192 Sum_probs=139.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
.+++.+..+.+..++..+..+.+ ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 34555555555555555555444 445566778999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.++. +++.++++|++.|++.++..+...+++.|.+++ +.|++.+
T Consensus 95 ~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~ 146 (496)
T PRK03893 95 FSVGTLACGFAP----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK------HLRNKAS 146 (496)
T ss_pred HHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHH
Confidence 999988888766 677789999999999999999999999999983 4467788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACL 220 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~ 220 (579)
+.++.+.++|..++|.+.+++.+.++|++.|++.++..
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 147 GFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 88888899999999999999998899999998754433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=198.31 Aligned_cols=356 Identities=13% Similarity=0.069 Sum_probs=223.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhH-----HHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL-----LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGS 100 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~-----~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~ 100 (579)
|.........++...+++....+++.|.+ ++|++..+ .+.+.+.+.+...++.++.|+++|| +|||++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHH
Confidence 45566667777777887777788888875 58888655 4788889999999999999999999 89999999998
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhh
Q 039312 101 IASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLES 180 (579)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 180 (579)
++..++..++.... +++.+++.|++.|++.+ ..+....++.+++++ ++|++
T Consensus 92 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~------~~~~~ 142 (408)
T PRK09874 92 LGMGIVMVLMGLAQ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR------NKSGW 142 (408)
T ss_pred HHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH------hhhhH
Confidence 88888887777655 56778899999999865 457777788888873 34677
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 181 FFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 181 ~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
..++++.+.++|..++|.+++.+.+..+|+..|++.++..++..+..+...++..++.++++.. + . +
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-------~---- 209 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEML-H-M-------R---- 209 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh-H-H-------H----
Confidence 7888888899999999999999988889999999887765555444333322211100000000 0 0 0
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
+..+. ..+.+.. ..+......+..
T Consensus 210 -------------------------~~~~~----------------------------~~~~~~~---~~~~~~~~~~~~ 233 (408)
T PRK09874 210 -------------------------EVVTS----------------------------LKNPKLV---LSLFVTTLIIQV 233 (408)
T ss_pred -------------------------HHHHh----------------------------CcCCchH---HHHHHHHHHHHH
Confidence 00000 0000000 001111111111
Q ss_pred hhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILC 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~ 420 (579)
...........+.......... .....+.+..+..+..++..++.+++ .+|+. +.+.+..+..+..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 234 ATGSIAPILTLYVRELAGNVSN-IAFISGMIASVPGVAALLSAPRLGKL----GDRIG-------PEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc-------cchhHHHHHHHHHHH
Confidence 1111111111111111110000 00011222233444445555655555 33432 224455555555555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 039312 421 MLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSS 500 (579)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~ 500 (579)
.+...... +.+.+.+..++.+++.....|...+...+..|++.||...++++....+|..+|+
T Consensus 302 ~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 302 LIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred HHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence 44433332 3344555667788899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 039312 501 LVINIIHRVT 510 (579)
Q Consensus 501 ~l~~~v~~~~ 510 (579)
.+.+.+.+..
T Consensus 365 ~~~G~l~~~~ 374 (408)
T PRK09874 365 LMGAAISANY 374 (408)
T ss_pred HHHHHHHhhc
Confidence 9999887653
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=200.15 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=140.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
+++.+..+.+..+...+..+. ..+..+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence 345556566666666655554 3556677788999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++...+.++. +.+.++++|++.|++.|...+....++.|.+|+ ++|+++.+
T Consensus 94 ~~~~~~~~~~~----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~------~~r~~~~~ 145 (426)
T PRK12307 94 SVGTGLSGLAS----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK------HLKSKASA 145 (426)
T ss_pred HHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH------hHhhHhhh
Confidence 99998888876 677899999999999999999999999999984 34677888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTAC 219 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~ 219 (579)
++..+..+|..+++.+.+.+.+..||++.|++.++.
T Consensus 146 ~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 146 FLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 888889999999999999888888999999875543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=197.88 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=135.0
Q ss_pred HHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 039312 46 ISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG 125 (579)
Q Consensus 46 ~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (579)
.....+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++.++.
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 80 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG----------- 80 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence 3445566888999999999999999999999999999999999 8999999999999999988888766
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 126 DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
+++.++++|++.|++.+...+...+++.|.+|+ ++|++.+++.....++|..+++.+++++.+
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA------SERATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH------HHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999983 457888999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 039312 206 NVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 206 ~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
..+|++.|++.++..++..+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 144 HFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred hCCchHHHHHHHHHHHHHHHHhhh
Confidence 889999999877665554444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-20 Score=197.68 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLM 109 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~ 109 (579)
..++..++..+..+.+...++. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHH
Confidence 3344444444444455455544 456799999999999999999999999999999999 89999999999999999888
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+.++. +++.+++.|++.|++.|...+...+++.+++++ ++|++++++++.+.
T Consensus 105 ~~~~~----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~ 156 (434)
T PRK11663 105 FGFSS----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR------TERGGWWAIWNTAH 156 (434)
T ss_pred HHHHh----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH------HHHHHHHHHHHHHH
Confidence 88776 667788899999999999889999999999983 45788899999899
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
++|..+++.+.+++.+.+|||+.|++.++..++.
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999988899999998877654433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-20 Score=194.55 Aligned_cols=356 Identities=14% Similarity=0.057 Sum_probs=217.0
Q ss_pred hhHHHHHHHHHHHHH---HHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKL---ASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~---~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+..+..+.+.+.+.. +...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||++++++.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~ 87 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAF 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 333444444444433 3333334443 4567899999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++..+. +++.+++.|++.|++.+...+...+.+.|.+++ +.|.+..
T Consensus 88 ~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~~~~~~ 139 (406)
T PRK15402 88 FILTCLAILLAQ----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE------ADAIKIT 139 (406)
T ss_pred HHHHHHHHHHHc----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh------hHHHHHH
Confidence 888888777765 566788999999999998888888999999884 2345566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (579)
++.+....+|..++|.+++++.+..+|++.|++.++..+++.+..+...|+..+++++..+..+.
T Consensus 140 ~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 204 (406)
T PRK15402 140 ALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKEL--------------- 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHH---------------
Confidence 77666778899999999999888889999998877765555444333222211100000000000
Q ss_pred CCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 039312 263 EPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISM 342 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 342 (579)
.+..+ ....+ +.+... .+........+
T Consensus 205 -------------------------~~~~~------------------------~~~~~-~~~~~~---~~~~~~~~~~~ 231 (406)
T PRK15402 205 -------------------------GRDYK------------------------LVLKN-RRFVAG---ALALGLVSLPL 231 (406)
T ss_pred -------------------------HHHHH------------------------HHHcC-cHHHHH---HHHHHHHHHHH
Confidence 00000 00000 111111 11111111111
Q ss_pred hccch---HHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 039312 343 DQQNT---FGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSIL 419 (579)
Q Consensus 343 ~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~ 419 (579)
..+.+ .+..+..+.+. ...+.......++.++..++.+++ .+|. .+.+.+..+.++.++
T Consensus 232 ~~~~~~~p~~~~~~~g~~~-------~~~g~~~~~~~~~~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 232 LAWIALSPVILISGEQLSS-------YEYGLLQVPVFGALIAGNLTLARL----TSRR-------PLRSLIRMGLWPMVA 293 (406)
T ss_pred HHHHHHhHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHH
Confidence 11111 11111111110 111222222333444455555544 3332 233556667776666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHH
Q 039312 420 CMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVS 499 (579)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~ 499 (579)
+.+....... ..+..+++++...++.+++.....+..+....... ++.||...++.++.+.+++.+|
T Consensus 294 g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g 360 (406)
T PRK15402 294 GLLLAALATV------------ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVG 360 (406)
T ss_pred HHHHHHHHHH------------cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHH
Confidence 6665554321 00124556677788899999888887777665444 4889999999999999999999
Q ss_pred HHHHHHhhccc
Q 039312 500 SLVINIIHRVT 510 (579)
Q Consensus 500 ~~l~~~v~~~~ 510 (579)
+.+.+.+.+..
T Consensus 361 ~~~~~~l~~~~ 371 (406)
T PRK15402 361 IELSKHAYLGG 371 (406)
T ss_pred HHHHHhcccCC
Confidence 99999887654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-20 Score=203.42 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=129.3
Q ss_pred hHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 039312 45 LISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC 124 (579)
Q Consensus 45 ~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (579)
+...+.+.+.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++..++.+++.++.
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 44556677788999999999999999999999999999999999 8999999999999999888888776
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 125 GDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ 204 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~ 204 (579)
+++.++++|++.|+|.|+..|...+++.|.+|+ +.|+..++++.....+|.++++.++.++.
T Consensus 254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~------~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ------EKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999983 45677888888888888888887665543
Q ss_pred cc-------------cchhHHHHHHHHHHHHHHHHHHh
Q 039312 205 TN-------------VSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 205 ~~-------------~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
.. .+||+.|++.++..++++++.++
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22 36899888877765555444433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-20 Score=196.45 Aligned_cols=176 Identities=12% Similarity=0.075 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
+|+.+..+.+..+++......+ .+..+.+++++|++..+.+++.+++.++..++.++.|+++|| +|||+++..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHH
Confidence 4555555555555554444444 445568899999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++.+++.++. +...++++|++.|++.|+..|....++.|++|+ ++|++..+
T Consensus 84 ~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~rg~~~~ 135 (412)
T TIGR02332 84 GIASTATMFAT----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA------YFRARANA 135 (412)
T ss_pred HHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH------HHHHHHHH
Confidence 99999988876 567799999999999999999988999999993 45678888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc------ccchhHHHHHHHHHHHHHHHHHHh
Q 039312 184 WWYFSFTVALVVVLTGVVYIQT------NVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+++.+.++|.++++.+++++.+ ..|||+.|++.++..++...+.++
T Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 136 LFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999888753 369999999977665544333333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-20 Score=202.00 Aligned_cols=399 Identities=12% Similarity=0.112 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHH
Q 039312 31 ILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMM 110 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~ 110 (579)
+.+..++..+... +.....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.+++
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDST-IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 44455566778899999999999999999999999999999999 899999999999999999888
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (579)
..+. ++..++++|+++|++.+...+...+++.|.+|+ ++|++++++++....
T Consensus 85 ~~~~----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~ 136 (485)
T TIGR00711 85 GVAP----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP------EKRGRAMAIWGLTVL 136 (485)
T ss_pred hCcC----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHH
Confidence 7765 567789999999999999999999999999983 456888999888999
Q ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHH---HHHhcccccCCCCC
Q 039312 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVA---ACRKRCFSVEPGCE 267 (579)
Q Consensus 191 ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~ 267 (579)
+|..++|.+++++.+++||++.|++.+...+++++...+..++..+++ .++.+........ ...........+
T Consensus 137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~-- 212 (485)
T TIGR00711 137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPE-- 212 (485)
T ss_pred HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCC--
Confidence 999999999999999999999999877665555444433333221111 1111111100000 000000000000
Q ss_pred CcccCCc-cccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 039312 268 HNYYDPP-LMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQN 346 (579)
Q Consensus 268 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 346 (579)
..+..+ ...................... ..+|.. ..+...+.+.....+..+.....++.... ..
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (485)
T TIGR00711 213 -RGWFDSNEILILSITGLVAIIAFVVWELT----------DDNPLV--DLRLFKYRNFTIGCVYMSLLGLGLYGSFY-LL 278 (485)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHHc----------CCCCcc--CHHHHcCCChHHHHHHHHHHHHHHHHHHH-HH
Confidence 000000 0000000000000000000000 000100 00000111111111111111111111110 01
Q ss_pred hHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 039312 347 TFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGS 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~ 426 (579)
..+..+..+.+. ...+.+.....++.++..++..++ .+|. ++.+.+..|.++.+++.+....
T Consensus 279 p~~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 279 PLYLQQVLGYTA-------LQAGLHILPVGLAPMLSSPIAGRM----GDKI-------DPRKLVTIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------CcHHHHHHHHHHHHHHHHHHhc
Confidence 111111111111 123344445556666666776655 3443 2335566677777666655442
Q ss_pred HHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039312 427 VEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINII 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v 506 (579)
.. ....+.+.++...++.+++.+...+.......+..|++.||.++|+.++...+|+.+|+.+.+.+
T Consensus 341 ~~-------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 341 TF-------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred cC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01234455566678889999888888888888899999999999999999999999999998876
Q ss_pred hc
Q 039312 507 HR 508 (579)
Q Consensus 507 ~~ 508 (579)
.+
T Consensus 408 ~~ 409 (485)
T TIGR00711 408 LT 409 (485)
T ss_pred HH
Confidence 54
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=198.69 Aligned_cols=348 Identities=17% Similarity=0.172 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMT 111 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~ 111 (579)
++..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence 344555566666566666658889999999999999999999999999999999999 8999999999999999855555
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q 039312 112 LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTV 191 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 191 (579)
++. +.+.++++|++.|++.+...+...+++.|.+++ ++|++.+++.+.+.++
T Consensus 81 ~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~ 132 (352)
T PF07690_consen 81 FAS----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP------EERGRAFGILSAGFSL 132 (352)
T ss_dssp HHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT------CCHHHHHHHHHHHHHH
T ss_pred hhh----------------------hHHHHhhhccccccccccccccccccccccchh------hhhhhccccccchhhh
Confidence 543 455799999999999999999999999999995 3467788999999999
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCccc
Q 039312 192 ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYY 271 (579)
Q Consensus 192 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 271 (579)
|..++|.+++++.+..+|++.|++.++..++..++.....++...+++..++.++
T Consensus 133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~------------------------- 187 (352)
T PF07690_consen 133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES------------------------- 187 (352)
T ss_dssp HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT-------------------------
T ss_pred hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc-------------------------
Confidence 9999999999999888999999998887776655433332221111110000000
Q ss_pred CCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHH
Q 039312 272 DPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGIL 351 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (579)
+ ++. ..+|+... +...+.+.+. .++.........+.........
T Consensus 188 ------------~----~~~----------------~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T PF07690_consen 188 ------------E----SKK----------------PKPLKPGF-KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPL 231 (352)
T ss_dssp ------------T------H----------------HHCCCH-C-THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------c----ccc----------------cccccccc-ccccccchhh---hhhhhhhHHHHHHHHhhcccch
Confidence 0 000 00010000 0111111111 1111111111111111111111
Q ss_pred ---HhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 039312 352 ---QAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVE 428 (579)
Q Consensus 352 ---~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~ 428 (579)
+..+.+ + ....+.+..+..+..++..++.+++ .+|+. ..+..........++.+......
T Consensus 232 ~l~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
T PF07690_consen 232 YLQEVLGFS---G---PSQAGLLFSIFGIVGIIGSLLAGRL----SDRFG-------RRRRLLIAILLLILGALGLLLLP 294 (352)
T ss_dssp HCCHHHHCC---T---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHTT-------CHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hhhhccCCC---H---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 0 0112233445555555556666655 44432 22334443444334433333222
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 039312 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSS 500 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~ 500 (579)
. ..+..+.....++.+++.....+....+..+.+|++.||++.|+.+...++|+.++|
T Consensus 295 ~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 295 F--------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp H--------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1 013345555778889999999999999999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-20 Score=192.56 Aligned_cols=340 Identities=9% Similarity=-0.009 Sum_probs=212.8
Q ss_pred HHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 039312 42 SMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRP 121 (579)
Q Consensus 42 ~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (579)
.|. ...+.+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.++.
T Consensus 19 ~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH-------
Confidence 443 3455678889999999999999999999999999999999999 8999999999999999998888877
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039312 122 SSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV 201 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~ 201 (579)
+++.++++|.+.|++.+...+.....+.+++++ +|+++.+++..+.++|..+++.+.+
T Consensus 90 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 90 ---------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred ---------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHH
Confidence 677899999999999998887778888888863 2567788888888899887777777
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCcccccccc
Q 039312 202 YIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKR 281 (579)
Q Consensus 202 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (579)
.+.+..|||+.|++.++..++..+..++..++.++++.+. + . +..
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~---~~~--------------- 192 (377)
T TIGR00890 148 SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT----------------N-I---EVS--------------- 192 (377)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc----------------C-c---ccc---------------
Confidence 7767789999999877765554443333222100000000 0 0 000
Q ss_pred CcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCC
Q 039312 282 TNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVG 361 (579)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
.+..++.+ ...+ +..... .......................... ..
T Consensus 193 ~~~~~~~~----------------------------~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 238 (377)
T TIGR00890 193 VKDYTVWE----------------------------MLRT-PQFWVL---YLSFFLNAVSGLLLIGLYKPYGQSLG--LS 238 (377)
T ss_pred hhhhhHHH----------------------------HHcC-ccHHHH---HHHHHHHhHHHHHHHHHHHHHHHHcC--CC
Confidence 00000000 0000 011111 11111111111111111111111111 10
Q ss_pred CccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039312 362 PHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSF 441 (579)
Q Consensus 362 g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 441 (579)
......+..+..+..++..++..++.+++.+| +.+..+.++.+++.+......
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~------------- 291 (377)
T TIGR00890 239 ---DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP------------- 291 (377)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc-------------
Confidence 01123445556666666667776664433222 345556666666655444332
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 442 VSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 442 ~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
....+.++...++.+++.+...+....+..|..|++.|+++.|+.+....+|+.+++.+.+.+.+..
T Consensus 292 --~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 292 --MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred --cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0112222333445566666666667788889999999999999999999999999999999887654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=189.03 Aligned_cols=171 Identities=18% Similarity=0.161 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHH-HHHHHHHHHHHH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLV-GSIASLLGMLMM 110 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~-~~~~~~~~~~~~ 110 (579)
++..++..++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++|| +||||.+++ +.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence 345677778888888999999999999999999999999999999999999999999 899987665 444445555666
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (579)
.++. +++.+++.|+++|.+.+...|...++..|..+++ ++ .+....+..+.+.+
T Consensus 82 ~~~~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 82 AWNR----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRT---GR-EAVMFSSVMRAQIS 135 (375)
T ss_pred Hhcc----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc---ch-hhHHHHHHHHHHHh
Confidence 6554 5667788888888887777887777777876531 11 12223566666789
Q ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 191 ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+|..++|.+++++.+..||++.|++.++..++..+..++
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988889999999987765555444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-19 Score=189.65 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=139.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
.++.+..+++..+......+ ......+++.+++|++..+.+++.+...++..++.++.|+++|| +|||++++.+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHH
Confidence 34444445555555544444 34445566778899999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++.+++.+.. +...+++.+++.|++.+...+...+++.|.+|+ +.|++.++
T Consensus 93 ~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~ 144 (398)
T TIGR00895 93 SVFTLLCALAT----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK------RFRGTAVG 144 (398)
T ss_pred HHHHHHHHHcc----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH------HhhchhHh
Confidence 88887777655 566788999999999999999999999999983 45678888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 225 (579)
+...+.++|..+++.+++++.+..||+..|++.++..++..+
T Consensus 145 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 145 LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred hHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 888899999999999999998888999999887544443333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=196.58 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=125.2
Q ss_pred HHhHHhcCCc--------hhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039312 51 VYLQNNYNLG--------GVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPS 122 (579)
Q Consensus 51 ~y~~~~l~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (579)
..+..+++++ ..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.+++.+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~------- 123 (481)
T TIGR00879 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF------- 123 (481)
T ss_pred hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3444555555 8999999999999999999999999999 89999999999999999888876541
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH--
Q 039312 123 SCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV-- 200 (579)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~-- 200 (579)
..+.+.++++|+++|+|.+...+...++++|.+++ ++|++++++++.+.++|..+++.++
T Consensus 124 ------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 124 ------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK------ALRGALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred ------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh------hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12456789999999999999999999999999984 4467788888889999999999998
Q ss_pred -hhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 201 -VYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 201 -~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
..+....+||+.|++.++..++.++..+
T Consensus 186 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLF 214 (481)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 6666778999999996665554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-20 Score=193.86 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMT 111 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~ 111 (579)
+++.+..+..++.+.+.+ +.+.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+..++.++.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 15 VLIGLNMRPLLTSVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred HHHHHHcchhhhccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHH
Confidence 334444444445555544 55678999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q 039312 112 LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTV 191 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 191 (579)
+++ ++..++++|+++|+|.+...+....++.+++++ +|+++.+.+..+.++
T Consensus 93 ~a~----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~ 143 (393)
T PRK09705 93 LYP----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMG 143 (393)
T ss_pred HCc----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHH
Confidence 887 566789999999999999999989999998862 256778888888899
Q ss_pred HHHHHHHHHhhhcccc-chhHHHHHHHHHHHHH
Q 039312 192 ALVVVLTGVVYIQTNV-SWVLGFAIPTACLAFS 223 (579)
Q Consensus 192 g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~ 223 (579)
|..+++.+++++.++. +||..+.+.++..++.
T Consensus 144 g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 144 GGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999887764 8998876655443333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=192.27 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=120.5
Q ss_pred HHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 039312 46 ISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG 125 (579)
Q Consensus 46 ~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (579)
...+.+.+.+++|+|..+.+++.+.+.+++.++.++.|+++|| +|||++++.+......+. ......
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~-~~~~~~----------- 76 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAA-GRLLDP----------- 76 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH-HHHHHh-----------
Confidence 3445566688999999999999999999999999999999999 799987765544443333 222221
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 126 DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
.++..++++|+++|+|.+.. +.....++|++|+ ++|+++.++.+.+.++|..+++.+++++.+
T Consensus 77 ----------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 77 ----------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE------ERRDLVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred ----------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15678999999999999864 4555556898883 457888999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 206 NVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 206 ~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
.+|||+.|++.++..++..+++++.
T Consensus 140 ~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 140 AGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998666555444444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-20 Score=197.54 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=119.7
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCCCCCCCCch
Q 039312 58 NLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGI-HQLRPSSCGDPPHCPQPQGW 136 (579)
Q Consensus 58 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 136 (579)
|.+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.+.++++... ..... .+..
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~-----------~~~~ 118 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP-----------DNTG 118 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccc-----------cchh
Confidence 8899999999999999999999999999999 899999999999988888777654200 00000 1112
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc--------cccc
Q 039312 137 QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ--------TNVS 208 (579)
Q Consensus 137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~--------~~~g 208 (579)
....++++|+++|++.|+..|...++++|++|+ ++|+++++....+..+|..+++.++..+. +.+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 456788999999999999999999999999994 34677888888888999988887665432 3568
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039312 209 WVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 209 ~~~~f~i~~~~~~~~~~~~ 227 (579)
||+.|++.++..++.++..
T Consensus 193 Wr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998776655554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-19 Score=195.89 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhH-HHH-----HHHHHHHHHHHhhhhhHHHhhcccChhHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL-LVN-----IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVG 99 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~-~~~-----i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~ 99 (579)
+.+....+..+++.+-+ ++..+..+++.+.++.+..+ ..+ +.++..++..++.++.|+++|| +|||+++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDF-GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence 44444555666665543 45666777888888643322 122 2456667888999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhh
Q 039312 100 SIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLE 179 (579)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 179 (579)
++++.++.++++++.+...+ ..+....++++|+++|+|.|+..+...++++|++|+ ++|+
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~--------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~------~~Rg 153 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATI--------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD------RKRG 153 (490)
T ss_pred HHHHHHHHHHHHhcccHHHH--------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC------CCCc
Confidence 99999999999987622110 001123589999999999999999999999999985 2345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc--------cccchhHHHHHHHHHHH
Q 039312 180 SFFNWWYFSFTVALVVVLTGVVYIQ--------TNVSWVLGFAIPTACLA 221 (579)
Q Consensus 180 ~~~~~~~~~~~ig~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~ 221 (579)
...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 154 ~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 154 FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 6667766667777777765544332 25799999998765444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=191.97 Aligned_cols=174 Identities=16% Similarity=0.232 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcC---CchhHHHHHHHHHHHH---HHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYN---LGGVLLVNIVTIWSGS---NNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~---~s~~~~~~i~~~~~~~---~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
+..+.+..+++.+-++ +..++.+++.++++ .+..+.+.+...+... ..++.+++|+++|| +|||+++.++.+
T Consensus 24 ~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3334444555555544 35677788888874 5565544444444444 44889999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
++.++.++++++.+... ....+...+++.|+++|+|.|+..|...++++|++|+ ++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~------~~rg~~ 161 (432)
T PRK10406 102 MMCFGSLVIACLPGYET--------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE------GRKGFY 161 (432)
T ss_pred HHHHHHHHHhhcCCchh--------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC------CcccHH
Confidence 99999999887652110 0012345789999999999999999999999999985 234566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--------cccchhHHHHHHHHHHHHH
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQ--------TNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~~ 223 (579)
.+..+.+.+.|..+++.+...+. ..+|||.+|++.++..++.
T Consensus 162 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 162 ASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 77777777888887776654433 2579999999877654433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=184.91 Aligned_cols=324 Identities=18% Similarity=0.214 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLM 109 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~ 109 (579)
.+.+..++.....+......+.|. +++|.+..+.+++.+...++..++.++.|+++|| +|||+.+.++.++..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHH
Confidence 345566777777777777776665 5679999999999999999999999999999999 89999999999999999988
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+.+.. +...++++|++.|++.+...+...+++.|.+++ ++|++.+++.+...
T Consensus 81 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 132 (352)
T cd06174 81 LAFAS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP------KERGRALGLFSAGF 132 (352)
T ss_pred HHHhc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc------cchhhhhhHHHHHH
Confidence 88765 667899999999999999999999999999985 34677889988899
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCc
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHN 269 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (579)
++|..++|.+++.+.+..+|+..|++.++..++..+...+..+
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 175 (352)
T cd06174 133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999988888999998887766655444332210
Q ss_pred ccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHH
Q 039312 270 YYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFG 349 (579)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (579)
..................+......+
T Consensus 176 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T cd06174 176 ------------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLY 201 (352)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00000000000110011111111111
Q ss_pred HHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchH-HHHHHHHHHHHHHHHHHHHH
Q 039312 350 ILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQ-RIKTGIVMSILCMLVAGSVE 428 (579)
Q Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~-~i~~G~~l~~~~~l~~~~~~ 428 (579)
..+..+.+. ...+.+.....+..++..++..++ .+|..+| + .+..+.++..++.+......
T Consensus 202 ~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 202 LQEVLGLSA-------AEAGLLLSLFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHhc
Confidence 111101111 223455556666667777777665 4444322 3 66777777777776666543
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+.+.+....++.+++.....+....+..+..|++.|++.+|+.+...++++.+++.+.+.+.+
T Consensus 264 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 264 -----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred -----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677788999999999999999999999999999999999999999999999999998876
Q ss_pred c
Q 039312 509 V 509 (579)
Q Consensus 509 ~ 509 (579)
.
T Consensus 327 ~ 327 (352)
T cd06174 327 T 327 (352)
T ss_pred c
Confidence 4
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=195.31 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=116.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchh
Q 039312 58 NLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQ 137 (579)
Q Consensus 58 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (579)
+.+..+.+++.+.+.++..++.++.|+++|| +|||+++.+++++..++.+++.++.+. ....+
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~ 114 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGS----------------SPKSV 114 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCc----------------ccchH
Confidence 4566778899999999999999999999999 899999999999999998887775410 00113
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc------------
Q 039312 138 FCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT------------ 205 (579)
Q Consensus 138 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~------------ 205 (579)
...++++|+++|++.|+..+..+.++.|.+|+ +.|+++.++.+....+|..+++.++.++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATK------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 56899999999999999999999999999994 456788888888888988888877654421
Q ss_pred -----------ccchhHHHHHHHHHHHHHHHH
Q 039312 206 -----------NVSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 206 -----------~~g~~~~f~i~~~~~~~~~~~ 226 (579)
.++||+.|.+.++..++.++.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 247999998877655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=188.27 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++...+..++.....+.....++ .+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence 4566667777777777776666665 4577899999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+.+++.++. +++.+++.|++.|++.+...+...+++.|.+++ ++|++.++.+
T Consensus 81 ~~~l~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 132 (382)
T PRK10091 81 GNAMFTLSS----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP------GKVTAAVAGM 132 (382)
T ss_pred HHHHHHHhC----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh------HHhhHHHHHH
Confidence 998888876 677899999999999999888888888898874 3356678887
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
..+..+|..++|.+++++.+..|||+.|++.++..++..+..
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999888899999998877655444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-19 Score=186.95 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=133.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.|.++.+++..++..++...+.+.++.|.. ++|.|..+.|++.+.+.++..++.++.|+++|| +|||+++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 466788888888888888888888887765 689999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++...+.++. +++.++++|++.|++.+...|...+.+.+..++ ++|++.+++
T Consensus 83 ~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 134 (381)
T PRK03633 83 AGCAGLGLMV----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS------RNRGRLLAA 134 (381)
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 9888887765 677889999999999999888877777777763 346778889
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchh
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWV 210 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~ 210 (579)
++.+.++|..++|.+++++.+...+.
T Consensus 135 ~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 135 YMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHHHhcccccccch
Confidence 88899999999999999887654333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-19 Score=184.91 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=143.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++.++.+.+..+...++.....+.+ +.+.+++|.+..+.+++.+.+..+..++.++.|+++|| +|||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHH
Confidence 4445555555555555554444444 55678899999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++..+. +++.++++|++.|++.+...+...+++.|.+|+ ++|++.+++
T Consensus 82 ~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 133 (385)
T TIGR00710 82 LSSLGLALSN----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG------EELSRIYSI 133 (385)
T ss_pred HHHHHHHHHc----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc------HHHHHHHHH
Confidence 8888887765 567789999999999999999999999999984 446788899
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
.+...++|..+++.+++++.+..+|+..|++.++..++..+..+.
T Consensus 134 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 134 LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988889999998877665555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=187.34 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHH---HHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISN---ITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
|.=+.++...++...++|-+.-+ ..+++.++.++|..|.|.+.+.+.+.+.++-.+.|.++|| .+.|+.+-+++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHH
Confidence 34456777778888888877644 4478888999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..+..++++++. +...+.+...+.|+..|.-.|.....++.+|++ ++|++..
T Consensus 104 sai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr------~eRG~~~ 155 (448)
T COG2271 104 SAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR------KERGTWW 155 (448)
T ss_pred HHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc------cccCceE
Confidence 999999999987 667788888999999999999999999999994 5578889
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 183 NWWYFSFTVALVVVLTGV--VYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~--~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+.++.+.|+|+++.|++. +++..+.+||.+|+++++..++..+..
T Consensus 156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~ 202 (448)
T COG2271 156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL 202 (448)
T ss_pred EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 888888899999999988655443333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-19 Score=185.37 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=138.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
.+|.++...+...+..+......+.+ +++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||++++++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence 45667767777766666655444444 45568899999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++...+..+. ++..+++.|++.|++.+...+....+..|.+++ ++++++.+
T Consensus 84 ~~~~~~~~~~~----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 135 (394)
T PRK11652 84 ILGTLVALFAH----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG------TQLRHANS 135 (394)
T ss_pred HHHHHHHHHHc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH------HHHHHHHH
Confidence 88888777765 567789999999999988777777788887773 34566777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
++..+..+|..++|.+++++.+..||++.|++.++..++.
T Consensus 136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 7788889999999999999988889999999876654443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-19 Score=186.93 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=139.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+++|..+.+.+..++.....+.+-..+ +.+.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 445666766666666666655444444 45678899999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.++. ++..++++|+++|++.|...+...+++.|.+|+ +.|++..
T Consensus 82 ~~i~~~l~~~~~----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~------~~r~~~~ 133 (394)
T PRK03699 82 MILAVAGLMFSH----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG------KQRGSRL 133 (394)
T ss_pred HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc------chHHHHH
Confidence 888888887765 667789999999999999888889999999974 2356667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHHHHHH
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQ-TNVSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~-~~~g~~~~f~i~~~~~~~~~~~ 226 (579)
+..+...++|+.++|.+.+++. +..|||+.|++.++..++..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7766677889999998888765 4579999998877655544333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-19 Score=188.26 Aligned_cols=175 Identities=11% Similarity=0.120 Sum_probs=121.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhc--CCchhHHHHHHH-----HHHHHHHHhhhhhHHHhhcccChhHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNY--NLGGVLLVNIVT-----IWSGSNNITSLLGAFVSDAYLGRFRTLL 97 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l--~~s~~~~~~i~~-----~~~~~~~~~~~~~G~laDr~~Gr~~~l~ 97 (579)
++.+...++..+++..-........+.++.+++ +.++. .+++.+ +..++..++.++.|+++|| +|||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHH
Confidence 455555555666665555443334444566555 66665 344432 2334456777888999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhh
Q 039312 98 VGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQ 177 (579)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (579)
++.+++.++.++++++++... ...+....+++.|+++|++.|+..|....++.|++|++ +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~ 158 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFST--------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------K 158 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHH--------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------C
Confidence 999999999999888762211 00012335888999999999999999999999999952 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhc--------cccchhHHHHHHHHHHH
Q 039312 178 LESFFNWWYFSFTVALVVVLTGVVYIQ--------TNVSWVLGFAIPTACLA 221 (579)
Q Consensus 178 r~~~~~~~~~~~~ig~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~ 221 (579)
|+...+....+..+|..++..+..++. ..+|||.+|++.++..+
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 456666666677788877776655543 25799999998766543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=192.68 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=126.6
Q ss_pred hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCc
Q 039312 56 NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQG 135 (579)
Q Consensus 56 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (579)
+++++..+.+.+.+.+.+++.++.+++|+++|| +|||+++.++.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 89999999999888888877655430
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-chhHHHH
Q 039312 136 WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV-SWVLGFA 214 (579)
Q Consensus 136 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~-g~~~~f~ 214 (579)
.+...+++.|+++|++.+...|....+++|++|+ ++|+++.++.+.+.++|.++++.+.+++.+.. ||+..|+
T Consensus 129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~ 202 (465)
T TIGR00894 129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY 202 (465)
T ss_pred cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence 1355689999999999999999999999999993 45788899999899999999999999998874 9999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 039312 215 IPTACLAFSITLFLLG 230 (579)
Q Consensus 215 i~~~~~~~~~~~~~~~ 230 (579)
+.++..++..++++..
T Consensus 203 i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 203 VFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9877655554444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=199.04 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=122.8
Q ss_pred HHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 039312 49 ITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPP 128 (579)
Q Consensus 49 ~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (579)
..+.+.+++|++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++..++...+++...
T Consensus 51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~------------- 116 (467)
T PRK09556 51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLG------------- 116 (467)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3466788999999999999999999999999999999999 89999999988888877766665320
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 039312 129 HCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV- 207 (579)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~- 207 (579)
....+...+++.|++.|++.+...|...++++|++|+ ++|+++++++..+.++|.++++.+..++....
T Consensus 117 ----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 117 ----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR------RKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred ----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc------cceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 0012677899999999999999999999999999995 33567788888788999999988877665432
Q ss_pred --chhHHHHHHHHHHHHHHH
Q 039312 208 --SWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 208 --g~~~~f~i~~~~~~~~~~ 225 (579)
+|+..|.+.++..++..+
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i 206 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGF 206 (467)
T ss_pred cCcchhHHHHHHHHHHHHHH
Confidence 588888876665444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-19 Score=184.81 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHH-HHHHhhhhhHHHhhcccChhHHHH-HHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSG-SNNITSLLGAFVSDAYLGRFRTLL-VGSIASL 104 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~l~-~~~~~~~ 104 (579)
..+..+...++.+++...+.+.++.|+.+++|++..+.|++.+.+.. +..++++++|+ +|| +||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHH
Confidence 34555666888888888888999999999999999999999876655 45555666666 999 79998765 4445555
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++..++.++. +++.+++.+.+.+...+...|...++..|..++ +++ ......++
T Consensus 94 ~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 147 (393)
T PRK15011 94 LACTLFAWNR----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADK---TGR-EAVMFSSF 147 (393)
T ss_pred HHHHHHHHhh----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh---ccc-hHHHHHHH
Confidence 5555555554 444554444444434446677777777775542 111 12233456
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
.+.+.++|.+++|.+++++.++.|||..|++.++..++..+..+.
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 777889999999999999998889999999887665555444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=192.58 Aligned_cols=173 Identities=12% Similarity=-0.006 Sum_probs=128.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++.+.......++.....+.+.. +.+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 34444454455555555555443 3456788999999999999999999999999999999999 899999999998888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++.++. +...++++|+++|++.+...+ ....+++++|+ +.|+++.+.
T Consensus 113 ~~~~~~~~~~----------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~------~~rg~a~g~ 163 (476)
T PLN00028 113 PAVFCMSLVS----------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG------KIVGTANGI 163 (476)
T ss_pred HHHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh------hheeHHHHH
Confidence 8888777765 566788899999999887543 45678899984 346777887
Q ss_pred HHHHHHHHHHHHHHHHhhhc----c-----ccchhHHHHHHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQ----T-----NVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~----~-----~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
.+...++|..+++.+.+.+. + ..|||+.|++.++..++..+..+
T Consensus 164 ~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 164 AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 77666777777766554432 1 25899999988776554444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=190.43 Aligned_cols=153 Identities=16% Similarity=0.046 Sum_probs=120.2
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
....+|+.++ |++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++.+.+.+...
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~----------- 115 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPW----------- 115 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence 3455677777 9999999999999999999999999999999 89999999999988888887776530
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHH-HHHHHHhhhcc
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALV-VVLTGVVYIQT 205 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-i~~~~~~~l~~ 205 (579)
...+...+++.|++.|++.|...|.....+.+++|+ ++|++++++++.+.++|+. .+|+.+..+..
T Consensus 116 -------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 116 -------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred -------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 112466788889999999999888888888999884 4467888888888888875 45554333333
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 039312 206 NVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 206 ~~g~~~~f~i~~~~~~~~~~ 225 (579)
..|||+.|++.++..++..+
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 35899999987765554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-19 Score=188.20 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=120.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHH-HHHHHH-----HHHhhhhhHHHhhcccChhHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIV-TIWSGS-----NNITSLLGAFVSDAYLGRFRTLLV 98 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~-~~~~~~-----~~~~~~~~G~laDr~~Gr~~~l~~ 98 (579)
++....+++..+++.+-... ..+..+.+.++++.+..+.+... +....+ ..++.++.|+++|| +|||++++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHH
Confidence 44444455555555555444 44555678888998887765443 222222 23578899999999 899999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQL 178 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (579)
+.++..++.+++.++.+...+ ..+....++++|+++|++.|...+....+++|++|+ ++|
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------~~r 151 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATI--------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP------GRK 151 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHH--------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc------ccc
Confidence 999999999998887521100 000012478999999999999999999999999995 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh--------ccccchhHHHHHHHH
Q 039312 179 ESFFNWWYFSFTVALVVVLTGVVYI--------QTNVSWVLGFAIPTA 218 (579)
Q Consensus 179 ~~~~~~~~~~~~ig~~i~~~~~~~l--------~~~~g~~~~f~i~~~ 218 (579)
++..+++....++|..+++.+++.+ .+.+|||+.|++.++
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 6777777667777777777666554 246799999987543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=183.60 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
..+..+...++..++...+...++. +.+++|.+..+.+++.+.+.+...++.+++|+++|| +|||++++++.++..++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHH
Confidence 3444555666666655444444444 467899999999999999999999999999999999 89999999999999888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.+.+.+.. + .++.|+++|++.+...|+..+++.|.+|+ ++|+++.++..
T Consensus 82 ~~~~~~~~----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~------~~~~~a~~~~~ 130 (393)
T PRK11195 82 CLLMLFGI----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG------EKLVKANGWME 130 (393)
T ss_pred HHHHHHHH----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHH
Confidence 87766644 2 26789999999999999999999999994 45788899988
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
...++|..+||.+++++.+. .|+..+.+.+...+++
T Consensus 131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 88999999999999999774 4777776665544444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=183.65 Aligned_cols=149 Identities=16% Similarity=0.122 Sum_probs=127.5
Q ss_pred HhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 039312 52 YLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCP 131 (579)
Q Consensus 52 y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (579)
.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||++++.+.++..++.+++.++.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~----------------- 102 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT----------------- 102 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence 3677899999999999999999999999999999999 8999999999999999988888765
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhH
Q 039312 132 QPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVL 211 (579)
Q Consensus 132 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~ 211 (579)
++..++++|+++|++.+...+...+.+.|.+++ +++.+.++++..+.++|..++|.+++++.+..||++
T Consensus 103 -----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~ 171 (413)
T PRK15403 103 -----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV 171 (413)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 677899999999999987666667888898884 345677888888899999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 039312 212 GFAIPTACLAFSITLFLL 229 (579)
Q Consensus 212 ~f~i~~~~~~~~~~~~~~ 229 (579)
.|++.++..+++++..++
T Consensus 172 ~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999887766655544333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=184.10 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=131.7
Q ss_pred HHHHHHHHhHHHHHHH--hHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHh
Q 039312 37 FEKLASMSLISNITVY--LQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTA 114 (579)
Q Consensus 37 ~~~~~~~~~~~~~~~y--~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~ 114 (579)
...+++++...+.|.+ +.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++..++..++.++.
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444455544 678999999999999999999999999999999999 8999999999888888888777765
Q ss_pred hhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 039312 115 GIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 194 (579)
+.+.+++.|+++|++.+...+...+++.|.+++ +++.+.++......++|..
T Consensus 93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 144 (401)
T PRK11043 93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA------QKANRVFATIMPLVALSPA 144 (401)
T ss_pred ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHH
Confidence 567788999999999888777778889999884 2345567777777889999
Q ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 195 VVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 195 i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
++|.+++++.+..||++.|++.++..++..+..+
T Consensus 145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999998889999999887766555544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=186.63 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=129.7
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
....+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 344567888999999999999999999999999999999999 8999999999999999998888876
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH-HHHhhhcc
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL-TGVVYIQT 205 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~-~~~~~l~~ 205 (579)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++++.+.+.++|..+++ .+++.+.+
T Consensus 82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAE 145 (379)
T ss_pred ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH------hhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence 667789999999999999999999999999984 3466778888888899999999 46666777
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 039312 206 NVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 206 ~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
..+|++.|++.++..++..++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHHHh
Confidence 78999999887765554433333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-18 Score=178.47 Aligned_cols=345 Identities=12% Similarity=0.030 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH-HHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA-SLLGM 107 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~-~~~~~ 107 (579)
+.+.+..++...++....++++.|++ ++|+|..+.+++.+.+.+...++.++.|.++|| +||++.....+.+ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence 44445555655665556678888874 689999999999999999999999999999999 7985433211111 11111
Q ss_pred H-HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 108 L-MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
+ .+..+. +++.+++.|.+++.+.+...|...++..+ .+ ++|++.++..+
T Consensus 85 ~~~~~~~~----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~ 134 (382)
T TIGR00902 85 AAFSAGAH----------------------NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVR 134 (382)
T ss_pred HHHHHhhh----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHH
Confidence 1 112222 56778889999999888888887777544 22 23566788888
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCC
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGC 266 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (579)
...++|.+++|.+++++.+.+||+..|++.....++.++ .+...++. ++++++ ++ ++..
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~----------------~~~~ 193 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI-PE----------------DESQ 193 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-cc----------------cccc
Confidence 899999999999999999999999998876554332222 22222210 010000 00 0000
Q ss_pred CCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 039312 267 EHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQN 346 (579)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 346 (579)
+..++. +...+ |++... .+...+....+.+..
T Consensus 194 ----------------~~~~~~----------------------------~~l~~-~~~~~~---l~~~~l~~~~~~~~~ 225 (382)
T TIGR00902 194 ----------------GDSAFI----------------------------ALLKN-PMNLRF---LAAVCLIQGAHAAYY 225 (382)
T ss_pred ----------------cchhHH----------------------------HHHcC-hHHHHH---HHHHHHHHHHHHHHH
Confidence 000000 00011 111111 111122222222222
Q ss_pred hHHHHHhhhcCCCCCCccccChh---hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 039312 347 TFGILQAIQMNKSVGPHFKMPPA---WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLV 423 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~ 423 (579)
+........ .| .+.. ....+..+..++..++.+++ .+|+ +..+.+..|.++.++..+.
T Consensus 226 ~~~~~~l~~----~g----~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 226 GFSAIYWQA----AG----ISASATGLLWGIGVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHHH----CC----CCHhHHHHHHHHHHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHHHHHHH
Confidence 222111111 11 2232 33333444444444444333 5553 4557778888888888777
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHH-HHHHHHHHHHHHH
Q 039312 424 AGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFF-LSLSVASYVSSLV 502 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~l 502 (579)
.+..+ +++.++...++.+++.++..+....++.+. |++.|++++++++ ...++|..+++.+
T Consensus 287 ~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 287 IGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 555666667999999999999999999988 9999999999975 6788999999999
Q ss_pred HHHhhcccc
Q 039312 503 INIIHRVTK 511 (579)
Q Consensus 503 ~~~v~~~~~ 511 (579)
.+.+.+..+
T Consensus 349 ~G~l~~~~g 357 (382)
T TIGR00902 349 AGFIYPTLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999988763
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-18 Score=177.95 Aligned_cols=169 Identities=9% Similarity=0.106 Sum_probs=135.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+.||.+....+.+++...+.+....++++++ +++|++..+.+++.+.+.++..++.++.|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 4567788888888888888777777888887 5789999999999999999999999999999999 8999999999988
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.... . ...++..+++.|++.|+|.+...+...+.+.+.+++ ++|+++.
T Consensus 88 ~~~~~~~~~~~~-~-----------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~------~~~g~~~ 143 (402)
T TIGR00897 88 WCVGHAAFIVFG-L-----------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ------DNLSSAV 143 (402)
T ss_pred HHHHHHHHHHHh-c-----------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH------HHHHHHH
Confidence 888876553221 0 011456778899999999888777777778888874 4467888
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhccccchhHHHHHHH
Q 039312 183 NWWYFSFTVAL-VVVLTGVVYIQTNVSWVLGFAIPT 217 (579)
Q Consensus 183 ~~~~~~~~ig~-~i~~~~~~~l~~~~g~~~~f~i~~ 217 (579)
++++.+.++|. .++|.+++++.+..||+..++...
T Consensus 144 g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 144 GWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 88888889996 578998888888788665555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=187.01 Aligned_cols=369 Identities=11% Similarity=-0.007 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+..+.+....++..++++....+++.|+++++|+|..+.+.+.+.+.++..+++++.|+++|| +|||++++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 456666677778888888889999999999999999999999999999999999999999999 8999999887665554
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+......+. .. .....+..+.++..+...+...+.+.++.++ ..+.++..++..
T Consensus 89 ~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~g~~ 146 (420)
T PRK09528 89 LFGPFFIYVFAPL-----------------LQ-YNILLGAIVGGIYLGFGFLAGAGAIEAYIER----VSRRSGFEYGRA 146 (420)
T ss_pred HHHHHHHHHHHHH-----------------HH-HHHHHHHHHHHHHhhhhhccchhhhhhHHHH----HHhhccccchhh
Confidence 4432221110000 00 0011222222333333222222233333221 112234556777
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCC
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPG 265 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (579)
+...++|.+++|.+++++.+ .+|+..|++.++..++++++.+..+++..+++...+ +. .+.+
T Consensus 147 ~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~ 208 (420)
T PRK09528 147 RMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN---------------AL--GANA 208 (420)
T ss_pred HHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc---------------ch--hccc
Confidence 77789999999999998876 489999988776666555554443322111000000 00 0000
Q ss_pred CCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 039312 266 CEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQ 345 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 345 (579)
+..++.+... ... .+.+.............+..+.+.
T Consensus 209 -----------------~~~~~~~~~~-------------------------~l~-~~~~~~l~l~~~~~~~~~~~~~~~ 245 (420)
T PRK09528 209 -----------------SAVSLKDALA-------------------------LLK-LPKFWFLVLYVIGVACFYDVFDQQ 245 (420)
T ss_pred -----------------ccccHHHHHH-------------------------Hcc-CCCeEeehHHHHHHHHHHHHHHHH
Confidence 0000000000 000 011111111111111112222222
Q ss_pred chHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 039312 346 NTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAG 425 (579)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~ 425 (579)
...+..+... +...+. ...+.+..+..+...+..++..++ .+|+.+| +.+..+.++..++.+..+
T Consensus 246 ~~~~~~~~~~-~~~~~~---~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 246 FPNFFASFFA-TPEQGT---RVFGYLNSFQVFLEALIMFFAPFI----INRIGAK-------NALLLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHHHHHHh-ccCcch---HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcc-------hhhHHHHHHHHHHHHHHH
Confidence 2222111111 111100 112344444555555666666655 4444322 446666666666665555
Q ss_pred HHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039312 426 SVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA-FFLSLSVASYVSSLVIN 504 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~l~~ 504 (579)
+.+ ++++++...++.+++.....+....++.+..|.+.|++..++ +++...+|..+++.+.+
T Consensus 311 ~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G 373 (420)
T PRK09528 311 FAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAG 373 (420)
T ss_pred hcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHH
Confidence 443 345566667777887777778888999999999999987765 67788899999999999
Q ss_pred Hhhccc
Q 039312 505 IIHRVT 510 (579)
Q Consensus 505 ~v~~~~ 510 (579)
.+.+..
T Consensus 374 ~l~~~~ 379 (420)
T PRK09528 374 NLYDSI 379 (420)
T ss_pred HHHHhh
Confidence 988764
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=191.24 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=159.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
..++.+.+++++.++++.--|.+-. ...=.++.+|.+....|++.+.+.+...+..|+.|+++|| +-|++++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHH
Confidence 4456677788899999999987655 4456688899999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
+.++.++.+++. .++++.++|.+.|+|.+.+.|..+++++|.|++ .+|++.+
T Consensus 108 W~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~------~~Rs~~~ 159 (493)
T KOG1330|consen 108 WTLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD------DKRSRVL 159 (493)
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc------hhhhHHH
Confidence 999999999987 788899999999999999999999999999996 6688999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
+++|+++++|..+|..+++.+.+..+ ||+.|...+++.++..++.+++.+
T Consensus 160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999999887666 999999988877766665555544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-18 Score=176.81 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
+...++..+....+.......+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l-p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGL-PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHH
Confidence 4445555555555555444444 55577899999999999999999999999999999999 899999999999988888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.++..+. +...++++|+++|++.+...+...+++.|.+++ ++|++..++.+.
T Consensus 83 ~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~ 134 (392)
T PRK10473 83 LLCSLAE----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD------RRRAKVLSLLNG 134 (392)
T ss_pred HHHHHhC----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH------HHHHHHHHHHHH
Confidence 8877655 556788899999999999888889999999983 456788888888
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
..++|..++|.+++++.+..||++.|++.++..++..++.
T Consensus 135 ~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 135 ITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888777899999988776555444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=188.98 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=123.2
Q ss_pred HHhHHhcCCc---hhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 039312 51 VYLQNNYNLG---GVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDP 127 (579)
Q Consensus 51 ~y~~~~l~~s---~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (579)
+-+.++++++ ..+.+++.+++.++..++.++.|+++|| +|||++++++.++..++.+++.++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 4466789998 8999999999999999999999999999 8999999999999999888888766
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039312 128 PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV 207 (579)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~ 207 (579)
+++.++++|++.|++.++..+...+++.|.+|+ +.|+...++...+..+|.++++.++..+.
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--- 240 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK------KQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 677899999999999999999999999999984 33566677777788899999988876664
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 039312 208 SWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 208 g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+||+.|++.++..++..+..+
T Consensus 241 ~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 241 DWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 399999887776555544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-18 Score=178.79 Aligned_cols=387 Identities=11% Similarity=0.067 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccCh-hHHHHHHHHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGR-FRTLLVGSIASLLGMLMMT 111 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~l~~~~~~~~~~~~~~~ 111 (579)
+..++..+++-...+++++|+++++|++..+.|++.+.+.++..++++++|+++|| +|| |+++.++.++..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566899999999999999999999999999999999999999999 765 7787777777766666666
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCC--ChhhhhhhhhhHHHHHHHH
Q 039312 112 LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTT--TEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~ 189 (579)
+.. ++..+++.|++.+++.+...+...++..+...+. +..+...|.+.++
T Consensus 88 ~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------ 139 (418)
T TIGR00889 88 QVT----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------ 139 (418)
T ss_pred Hhc----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------
Confidence 554 4566778888888887766666555432222100 0000011223333
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCC-ChhhHHHHHHHHHHHhcccccCCCCCC
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAG-SVFSDMAKVVVAACRKRCFSVEPGCEH 268 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (579)
.+|.+++|.+++.+.....|. +|++.++..++..+..+ ..++..++++++ ....+.
T Consensus 140 ~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~--------------------- 196 (418)
T TIGR00889 140 TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKVM--------------------- 196 (418)
T ss_pred hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHHH---------------------
Confidence 478999999988885433354 45555554444433322 222211100000 000000
Q ss_pred cccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhh-hhHHHHHHHHHHhhhccch
Q 039312 269 NYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAI-LPVCVSGIACFISMDQQNT 347 (579)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~ 347 (579)
...++.+ ..++ +++... +..++........+ ....
T Consensus 197 --------------~~~~~~~----------------------------~~k~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 232 (418)
T TIGR00889 197 --------------LGLDAFI----------------------------LFKN-KRMAIFFFFSMLLGAPLQITN-IFGN 232 (418)
T ss_pred --------------hhhhHHH----------------------------HhcC-CCeeeHHHHHHHHHhHHHHHH-HhHH
Confidence 0000000 0000 111011 11111111111111 1111
Q ss_pred HHHHHhhhcCCCCC-Cccc-cChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 039312 348 FGILQAIQMNKSVG-PHFK-MPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAG 425 (579)
Q Consensus 348 ~~~~~~~~~~~~~~-g~~~-~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~ 425 (579)
.+ .+..+.+...+ + +. ...+....+..+..++...+.+++ .+|+ ++.+.+..+.++.+++.....
T Consensus 233 ~~-~~~~g~~~~~~~~-~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~-------g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 233 GF-LHEFGRNPEFADS-FVVKNASIWMSLSQFSEIFFILTIPFF----LKRF-------GIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HH-HHHhcccccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111100 0 00 112334444555555555555555 4443 233667777777777665554
Q ss_pred HHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 039312 426 SVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFF-LSLSVASYVSSLVIN 504 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~l~~ 504 (579)
... .....++.++...++.++++....+....++.+.+|++.|++++|+.+ ...++|..+|+.+.+
T Consensus 300 ~~~-------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G 366 (418)
T TIGR00889 300 YGD-------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG 366 (418)
T ss_pred HcC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 422 001123345556788899999999999999999999999999999996 678899999999999
Q ss_pred HhhccccccCCcChH------HHHHHHHHHHhhcccccccccc
Q 039312 505 IIHRVTKRTGNSPWL------GAVNFVYFSFFASHFVVNTTVA 541 (579)
Q Consensus 505 ~v~~~~~~~~~~~w~------~~l~~l~~~~~~~~~~~~~~~~ 541 (579)
.+.+..+..+..+|. +++.++..+...+.++++++.-
T Consensus 367 ~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 367 VMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 988875432222343 3333444444444455554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-18 Score=180.49 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
++....+..+..+.+...+........+ +.+++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 3344555555555566666665555555 45599999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
++.++.+++.... . ..++..++++|+++|+|.|...+...+++.|..++ ++ +...
T Consensus 100 ~~~~~~~l~~~~~-~------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~---~~---~~~~ 154 (438)
T PRK10133 100 LYALGAALFWPAA-E------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE---SS---GHFR 154 (438)
T ss_pred HHHHHHHHHHHHH-h------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh---hh---HHHH
Confidence 9999998764221 0 01677899999999999999999999999986542 11 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 039312 182 FNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l 203 (579)
.+.+.....+|..+++.+++.+
T Consensus 155 ~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 155 LNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666778888888776543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=180.05 Aligned_cols=357 Identities=13% Similarity=0.064 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLM 109 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~ 109 (579)
.+....++-+++...-..-++ ++..++.-|+...+++..+..+...+..+++|.++|| +.|||+++.+-++..+....
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~ 91 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALL 91 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHH
Confidence 333444444444433333333 3344567789999999999999999999999999999 89999999998887766655
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+.+.... +..+.+.+++.-++.|++.+...|+..+++.+..|+ ++..++.++.....
T Consensus 92 L~~l~~~-----------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~------~~L~~A~al~s~~~ 148 (524)
T PF05977_consen 92 LAVLAFF-----------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK------EDLPAANALNSISF 148 (524)
T ss_pred HHHHHHh-----------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHH
Confidence 5543311 123677888888999999999999999999999994 44667788888899
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCc
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHN 269 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (579)
|+.-.+||.++|.+....|-.+.|++.++..++.+..+...+++...+ ..+.+...+.+..
T Consensus 149 niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~---------------- 209 (524)
T PF05977_consen 149 NIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALRE---------------- 209 (524)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHH----------------
Confidence 999999999999998888988999998887766655444433321111 1010000000000
Q ss_pred ccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHH
Q 039312 270 YYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFG 349 (579)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (579)
-.++ +.+.+.+...+. ...++...........
T Consensus 210 --------------G~ry-------------------------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLl 241 (524)
T PF05977_consen 210 --------------GLRY-------------------------------VRSSPPLRSVLL---RSFLFNLFASAVWALL 241 (524)
T ss_pred --------------HHHH-------------------------------HhcchHHHHHHH---HHHHHHHhhhHHHHhh
Confidence 0000 000111111111 1111111111111111
Q ss_pred HHHhh-hcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 039312 350 ILQAI-QMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVE 428 (579)
Q Consensus 350 ~~~~~-~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~ 428 (579)
+.... .++... ...+.+.....++.+++..+..++ .+| .+..+.+..+.++.+++++..++..
T Consensus 242 Pl~a~~~l~~~a-----~~yGll~a~~gvGai~Gal~~~~l----~~~-------~~~~~lv~~~~~~~a~~~~~lal~~ 305 (524)
T PF05977_consen 242 PLFARDVLGGGA-----SGYGLLLAAFGVGAILGALLLPRL----RRR-------LSSRRLVLLASLLFALALLLLALSP 305 (524)
T ss_pred hHHHHHHhCCcH-----HHHHHHHHHHHHHHHHHHHHHHHh----hcc-------cCcchhhHHHHHHHHHHHHHHhcch
Confidence 22211 111111 112344445555555555544332 222 2344556677777777777666654
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+.+..++.+++.|++........++.+.+..|+++||+.++++.+....+..+|..+.|.+.+
T Consensus 306 -----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 306 -----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778889999999999999999999999999999999999999999999999998877
Q ss_pred ccc
Q 039312 509 VTK 511 (579)
Q Consensus 509 ~~~ 511 (579)
..+
T Consensus 369 ~~g 371 (524)
T PF05977_consen 369 HFG 371 (524)
T ss_pred HhC
Confidence 653
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=175.82 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHH-hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQN-NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
|.++...+. +...+..-.+...+...+.+ ++|+|..|.+++.+++.+.+.++.++.|++.|| +|.|+++.++.++..
T Consensus 34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 555554444 34444444445555566554 799999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
+.++++.++... ...++..+++.|++.|++ |...+.....+.++||+ ++|+++.++
T Consensus 112 i~~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~------~~rG~A~Gi 167 (462)
T PRK15034 112 IPCVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK------AKQGSALGI 167 (462)
T ss_pred HHHHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH------hHhHHHHHH
Confidence 888888875200 011678899999999998 66778889999999994 446778888
Q ss_pred HHHHHHHHHHHHHHHHhhhc-----c-------------ccchhHHHHHHHHHHHHHHHHHHh
Q 039312 185 WYFSFTVALVVVLTGVVYIQ-----T-------------NVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~-----~-------------~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+....|+|..+++.+.+.+. . ..+|+.++++-.+..+++.++.++
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666777766655544322 1 234676666655554444444433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=184.57 Aligned_cols=414 Identities=12% Similarity=0.098 Sum_probs=237.2
Q ss_pred HhHHHHHHHhHHhc-----CCch--hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhh
Q 039312 44 SLISNITVYLQNNY-----NLGG--VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGI 116 (579)
Q Consensus 44 ~~~~~~~~y~~~~l-----~~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~ 116 (579)
+....+..+++... ..+. .+.+++.+.+.+++.++.+++|+++|+ +|||++++++.+++.+|.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 45555555555422 1122 345899999999999999999999999 8999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 039312 117 HQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVV 196 (579)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 196 (579)
+...++++|++.|+|.|+.....+.+++|..|+ +.|+...+.++...++|..++
T Consensus 141 --------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 141 --------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred --------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999884 567888888888999999999
Q ss_pred HHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--ccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCC
Q 039312 197 LTGVVYIQTN-VSWVLGFAIPTACLAFSITLFLL--GRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDP 273 (579)
Q Consensus 197 ~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (579)
..++....+. ++||..+.+..+..++..+.+++ ..|++.-+..+..+..+.. ...+... .++.
T Consensus 195 ~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l----~~l~g~~---~~~~------- 260 (513)
T KOG0254|consen 195 YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSL----KRLRGLS---PEDV------- 260 (513)
T ss_pred HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHH----HHHhCCC---Ccch-------
Confidence 6665554432 48998888776655544444333 2344333322222222211 1111100 0000
Q ss_pred ccccccccCcccchhh--hhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHH
Q 039312 274 PLMIKLKRTNRFKCLD--RAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGIL 351 (579)
Q Consensus 274 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (579)
.++...+. ...... ....+..|+.+.. ....|+....+.+..++..........++..+.
T Consensus 261 --------~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if 322 (513)
T KOG0254|consen 261 --------EVELELLKIKLLVEAE--------VAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF 322 (513)
T ss_pred --------HHHHHHHHHHHHHhhh--------cccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH
Confidence 00000000 000000 0000001221111 112233322222222222211111111111222
Q ss_pred HhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 352 QAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRR 431 (579)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~ 431 (579)
+..+.+.+. .........++.++.++...++|++ .| +..+..|.+.+.+++++.+......
T Consensus 323 ~~~g~~~~~----~~~~~~~~~v~~~~t~~~~~lvd~~----gR-----------r~lll~s~~~m~~~~~~~~~~~~~~ 383 (513)
T KOG0254|consen 323 KSAGLKSDT----FLASIILGVVNFLGTLVATYLVDRF----GR-----------RKLLLFGAAGMSICLVILAVVGVFA 383 (513)
T ss_pred HhcCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHh----cc-----------HHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 222221110 0122333444444444443443332 32 2778888888888888877654321
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 432 RELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
.+.. +......++.++..+++.........|..|.+..|..|.+.|+.+.++....+++.+++-....+......+
T Consensus 384 ~~~~----~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~ 459 (513)
T KOG0254|consen 384 LYYP----NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG 459 (513)
T ss_pred ccCC----CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1000 011233455556667777777888889999999999999999999999999999988887666555443321
Q ss_pred ccCCcChHHHHHHHHHH-Hhhcccccccccc
Q 039312 512 RTGNSPWLGAVNFVYFS-FFASHFVVNTTVA 541 (579)
Q Consensus 512 ~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~ 541 (579)
..+...++..++.+... ++.....+.+...
T Consensus 460 ~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 460 IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 01111222444444333 4555555555544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-18 Score=181.43 Aligned_cols=342 Identities=13% Similarity=0.144 Sum_probs=221.5
Q ss_pred hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCc
Q 039312 56 NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQG 135 (579)
Q Consensus 56 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (579)
++.++..+.+++.+++..+..++++++|+++|| +|-|+++.++.++..+++++..++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 688999999999999999999999999999999 89999999999999999999998872
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHH
Q 039312 136 WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTN-VSWVLGFA 214 (579)
Q Consensus 136 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~-~g~~~~f~ 214 (579)
.+.+.+++.|+++|++.|...|++..+.+.+.|+ .+|+++.+..+.+..+|.+++..+.|++-++ .||+.+|+
T Consensus 126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY 199 (466)
T KOG2532|consen 126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY 199 (466)
T ss_pred hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence 2344789999999999999999999999999994 4467888888888899999999999999888 99999999
Q ss_pred HHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcc
Q 039312 215 IPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALI 294 (579)
Q Consensus 215 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (579)
+.+...++..++++....+...+.+.-++ +|.+++++.+..
T Consensus 200 ~~g~~g~i~~~~w~~~~~d~P~~h~~is~---------------------------------------~El~~I~~~k~~ 240 (466)
T KOG2532|consen 200 VFGIVGLIWFILWFLFYSDSPSKHPNISE---------------------------------------KELKYIEKGKSE 240 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCH---------------------------------------HHHHHHHhcccc
Confidence 99887777666665554332222222111 111112111111
Q ss_pred cCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHH-------HHHHHhhhccchHHHHHhhhcCCCCCCccccC
Q 039312 295 TEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSG-------IACFISMDQQNTFGILQAIQMNKSVGPHFKMP 367 (579)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (579)
... +.+ ...||+ .+++..++++.. ..++.+.++.++ +..+.++++.. .
T Consensus 241 ~~~-----~~~-~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~Pt-Y~~~VL~f~v~-------~ 295 (466)
T KOG2532|consen 241 AHV-----KKK-PPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPT-YLKEVLGFDVR-------E 295 (466)
T ss_pred ccc-----CCC-CCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhCCChh-------h
Confidence 000 000 245663 223333333222 222222222222 22333444432 3
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKT--GIVMSILCMLVAGSVEKRRRELALKHDSFVSPM 445 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~--G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
.+.+.+++.+...+...+.+.+.|.+.+| .-. ....+++.- +....++.++..++... -
T Consensus 296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~---------------~ 356 (466)
T KOG2532|consen 296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD---------------E 356 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC---------------C
Confidence 55777788888888888888887776665 211 233345543 44444444444444320 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
..+..++.+.+.....++..+..+.-..+.+| ++-+..+|+.++...++++++|.+++.+..
T Consensus 357 ~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 357 HRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred cchHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 11222222222222222333333333333365 558999999999999999999999988764
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-17 Score=171.05 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=130.9
Q ss_pred hHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 039312 45 LISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC 124 (579)
Q Consensus 45 ~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (579)
..+.++.+ .+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++..++..++.+..
T Consensus 10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34555555 45799999999999999999999999999999999 8999999999999999988888765
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 125 GDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ 204 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~ 204 (579)
+.+.+++.|++.|++.+...+...+++.|.+++ ++|++.+++.+...++|..++|.+++++.
T Consensus 78 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 78 ------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK------EEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999884 45678888988899999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 039312 205 TNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 205 ~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+..+|++.|++.++..++..+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHH
Confidence 88899999988776655554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=174.92 Aligned_cols=179 Identities=10% Similarity=-0.098 Sum_probs=131.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.+|.+....++...+.....++++.|+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 456777778888888888888999999999999999999999999999999999999999999 8999999887766655
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+......+.. .......+.+.+++.|++.+...+....+..|.-++ +...++..
T Consensus 81 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~ 138 (396)
T TIGR00882 81 LFAPFFIYVFGPLL--------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKA 138 (396)
T ss_pred HHHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchh
Confidence 44432211100000 000223456667888888888888877766553221 12345666
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+...++|.+++|.+++.+.+ .+|+..|++.+...++..++.+
T Consensus 139 ~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 139 RMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 67789999999999998865 5999999988776555544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-17 Score=169.08 Aligned_cols=340 Identities=15% Similarity=0.049 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh----HHHHHHHHHHHHHHHHH
Q 039312 35 ETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF----RTLLVGSIASLLGMLMM 110 (579)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~----~~l~~~~~~~~~~~~~~ 110 (579)
.++..++...+.++++.|++ ++|.|..+.|++.+++.+...++.+++|.++|| +||+ +.+.++..+. ...+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH---HHHH
Confidence 34444555666778888885 589999999999999999999999999999999 8984 3332222111 1111
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (579)
.... .+.+.+++.|++.|++.+...|...++..+..+ +|++.++..+...+
T Consensus 88 ~~~~---------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--------~~~~a~~~~~~~~~ 138 (382)
T PRK11128 88 WFGA---------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--------QIGLDYGKVRLWGS 138 (382)
T ss_pred HHhc---------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--------hccCCcchHHHHHH
Confidence 1111 157778889999999999999988887777522 23455666777789
Q ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcc
Q 039312 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNY 270 (579)
Q Consensus 191 ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (579)
+|.+++|.+++++.+++||+..|++.++..++..+... ..++ .++++++. +. ..+
T Consensus 139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-------------~~---~~~----- 193 (382)
T PRK11128 139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGESR-------------QQ---ESA----- 193 (382)
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCccccc-------------cc---ccc-----
Confidence 99999999999999989999999877654444333222 2221 11110000 00 000
Q ss_pred cCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHH
Q 039312 271 YDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGI 350 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (579)
. ...| .+.-..|.++... ....+....+....+...
T Consensus 194 ------------~------------------------~~~~-----~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~ 229 (382)
T PRK11128 194 ------------G------------------------WPAW-----KALLKEPTVWRFL---LCVSLLQGSHAAYYGFSA 229 (382)
T ss_pred ------------c------------------------cchH-----HHHHcChhHHHHH---HHHHHHHHHhHhHHHHHH
Confidence 0 0000 0000011111111 111111111111111111
Q ss_pred HHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 351 LQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR 430 (579)
Q Consensus 351 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~ 430 (579)
........+. ...+.+..++.+..++..++.+++ .+|+ +..+.+..+.++.+++++..+..+
T Consensus 230 ~~~~~~g~s~-----~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~~~~-- 291 (382)
T PRK11128 230 IYWQAAGYSA-----STIGYLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMGSTT-- 291 (382)
T ss_pred HHHHHCCCCH-----hHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 1111111100 112233334444444444444444 5553 344557777777777766555443
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 039312 431 RRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFF-LSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~l~~~v~~~ 509 (579)
+.+++++..++.+++..+..+....+..+. |++.+++.+++.+ ..+++|..+|+.+.+.+.+.
T Consensus 292 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 292 ---------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677888999999999999998887 5555788899875 66678889999999998877
Q ss_pred cc
Q 039312 510 TK 511 (579)
Q Consensus 510 ~~ 511 (579)
.+
T Consensus 356 ~g 357 (382)
T PRK11128 356 LG 357 (382)
T ss_pred cc
Confidence 53
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=178.33 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=124.5
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
....+++++ +|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.+....
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA---------- 114 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc----------
Confidence 344567765 59999999999999999999999999999999 899999999988888887776554210
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc-c
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ-T 205 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~-~ 205 (579)
..+...+++.|++.|++.|...+.....+.|++|+ ++|+++.++++.+.++|..+++.+.+... .
T Consensus 115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 11456678889999999999988888999999984 34678899988899999999988776543 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 039312 206 NVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 206 ~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
..+||..|++.++..++..+..++
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999877765554433333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-17 Score=196.61 Aligned_cols=356 Identities=12% Similarity=0.064 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCch--hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGG--VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
+.....+++.++.++...+....+..++...++.+. ...+++.+++.++..++.+++|+++|| +|||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHH
Confidence 455555666666666666666666666666666654 346888999999999999999999999 89999999988776
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
+++.+++.++... .+++.++++|+++|++.+...++..++++|.+++ ++|+++++
T Consensus 88 ~~~~~~~~~~~~~-------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~ 142 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK------ENLSRANG 142 (1146)
T ss_pred HHHHHHHHHHHHH-------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc------ccchhhhh
Confidence 6666555543211 1567899999999999999999999999999985 34678899
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc--------c-chhHHHHHHHHHH-HHHHHHHHhccceeeecCCCCChhhHHHHHHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTN--------V-SWVLGFAIPTACL-AFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVA 253 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~--------~-g~~~~f~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 253 (579)
++..+.++|.++|+.+++++... + +|.+.+.+.++.. ++++++.+ ..++.....+....
T Consensus 143 ~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------- 211 (1146)
T PRK08633 143 LLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAY-RLPKVPAAAPEVFD---------- 211 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHh-cCcCCCCCCccccc----------
Confidence 99999999999999999988764 2 3333333332222 22222222 22221110000000
Q ss_pred HHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh---hhh
Q 039312 254 ACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILP 330 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~ 330 (579)
+ ... ... ....+..+.+++ ...
T Consensus 212 ----~-----~~~----------------~~~------------------------------~~~~~~~~~l~~~~~~~~ 236 (1146)
T PRK08633 212 ----K-----KKY----------------LFP------------------------------KLLWRNLKLLRSDRVLWL 236 (1146)
T ss_pred ----c-----ccc----------------ccH------------------------------HHHHHHHHHHhcCcHHHH
Confidence 0 000 000 000000111110 011
Q ss_pred HHHHHHHHHHhhhccchHHH---HHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCch
Q 039312 331 VCVSGIACFISMDQQNTFGI---LQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQ 407 (579)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~ 407 (579)
..+...+++........... ....+.+.. ...+.+.....++.++..++.+++ .+|. ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------~~~g~~~~~~~ig~~~g~~~~g~l----~~r~-------~~~ 299 (1146)
T PRK08633 237 AIIGLSYFWFISQLAQANFPAYAKEVLGLDNT------FQVQYLLAASAIGIGIGSLLAGRL----SGRH-------IEL 299 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHH----hCCc-------eEc
Confidence 11111111111111111111 111111110 012344445555555666665554 4443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH
Q 039312 408 QRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA 487 (579)
Q Consensus 408 ~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi 487 (579)
..+.++.++++++.++..... +.+++++..++.+++.++..+..++++.+.+|.+.||+++|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 362 (1146)
T PRK08633 300 GLVPLGALGLALSLFLLPTAP-----------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAA 362 (1146)
T ss_pred cchhHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHH
Confidence 445556666666655555432 445566677888899999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039312 488 FFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 488 ~~~~~~ig~~l~~~l~~~v~ 507 (579)
.++...+|..+++.+.+++.
T Consensus 363 ~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 363 NNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777766554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-17 Score=175.81 Aligned_cols=356 Identities=12% Similarity=0.159 Sum_probs=212.7
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc---cChhH-HHHHHHHHHHHHHHHHH
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY---LGRFR-TLLVGSIASLLGMLMMT 111 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~l~~~~~~~~~~~~~~~ 111 (579)
+..++....+..+++.|+++.+|+++.++|.+.++..+...+..|+.|+++||. +|||| .++++.+...++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 444556666778899999999999999999999999999999999999999972 68855 56667777777777666
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q 039312 112 LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTV 191 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 191 (579)
...+.+ .......+++.+++.+++.+...+...++.+|..++ + ++|.+..++.....++
T Consensus 89 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~---~~R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 89 TTPDFS----------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--P---RERESLSTFRRFGATL 147 (437)
T ss_pred hCCCCC----------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--H---HHHHHHHHHHHHHHHH
Confidence 543111 012345667777888888888887778888887754 2 3356677776667777
Q ss_pred HHHHHHHHHhhhc-------cccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCC
Q 039312 192 ALVVVLTGVVYIQ-------TNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEP 264 (579)
Q Consensus 192 g~~i~~~~~~~l~-------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (579)
|..+++.+.+.+. +..+|+..+++.++..++..+..+...++..++.+.+++
T Consensus 148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~--------------------- 206 (437)
T TIGR00792 148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE--------------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc---------------------
Confidence 7776655544332 246899988887766555544433333321100000000
Q ss_pred CCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 039312 265 GCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQ 344 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 344 (579)
++.+..+. + +..-..|.+... .....+.+..+..
T Consensus 207 ------------------~~~~~~~~--------------------~-----~~l~~~~~~~~~---~~~~~~~~~~~~~ 240 (437)
T TIGR00792 207 ------------------KKLSLKQI--------------------F-----KALFKNDQLLIL---CLAYLFYNLAFNI 240 (437)
T ss_pred ------------------cCCCHHHH--------------------H-----HHHhCCHHHHHH---HHHHHHHHHHHHH
Confidence 00000000 0 000001111111 1111111111111
Q ss_pred cchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 039312 345 QNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVA 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~ 424 (579)
........ .....+. ....+.+..+..+..++..++..++ .+|++ +.+.+..|.++.+++.+..
T Consensus 241 ~~~~~~~~---~~~~~~~--~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g-------~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 241 KNGVQVYY---FTYVLGD--PELFSYMGSIAIVAGLIGVLLFPRL----VKKFG-------RKILFAGGILLMVLGYLIF 304 (437)
T ss_pred Hcchhhee---EeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHH
Confidence 11111111 1110110 0112234445566666667776655 45542 2255666777766666554
Q ss_pred HHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------hhhHHHHHHHHHHHHHHHHH
Q 039312 425 GSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP-------ESMRTVAGAAFFLSLSVASY 497 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~ 497 (579)
.+.. .+.+.+++..++.+++.....+..+++..+..| ++.+|.+.|++++...+|..
T Consensus 305 ~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~ 368 (437)
T TIGR00792 305 FFAG----------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA 368 (437)
T ss_pred HHcc----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence 4322 123444556677888888888999999888765 56689999999999999999
Q ss_pred HHHHHHHHhhcccc
Q 039312 498 VSSLVINIIHRVTK 511 (579)
Q Consensus 498 l~~~l~~~v~~~~~ 511 (579)
+++.+.+.+.+..+
T Consensus 369 lg~~i~g~ll~~~G 382 (437)
T TIGR00792 369 LAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998876654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-18 Score=177.07 Aligned_cols=386 Identities=12% Similarity=0.092 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHH
Q 039312 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFA 143 (579)
Q Consensus 64 ~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (579)
.+.+++++.++++++++++|+++|| +|||..++++.++..++.+++.++...+ ...++++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~-------------------~~e~li~ 121 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP-------------------SFEMLIL 121 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHH
Confidence 3566888999999999999999999 8999999999999999998888776332 5678999
Q ss_pred HHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH-h-hhccccchhHHHHHHHHHHH
Q 039312 144 ALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV-V-YIQTNVSWVLGFAIPTACLA 221 (579)
Q Consensus 144 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~-~-~l~~~~g~~~~f~i~~~~~~ 221 (579)
+|++.|+..|......+.++.|..|+ +.|+..-.....+.++|..++..++ . .+.+.-.|.+.+.+.++..+
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~sP~------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~ 195 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEISPK------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL 195 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcChh------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999995 5566666667778888888886654 2 24455569999888888766
Q ss_pred HHHHHHHhc--cceeeec-CCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCC
Q 039312 222 FSITLFLLG--RRCYIYI-KPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPS 298 (579)
Q Consensus 222 ~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (579)
+.++.+.+. .|+|.-. +.+++++.+.. + .|++.++.+.. . ++....++.+.
T Consensus 196 ~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl-------~------------~y~G~~~~~~~-~-e~~~~e~~~~~----- 249 (485)
T KOG0569|consen 196 LQLALLPFLPESPKYLLIKKGDEEEARKAL-------K------------FYRGKEDVEAE-I-EEMLREIEEEE----- 249 (485)
T ss_pred HHHHHHhcCCCCcchHHHHcCCHHHHHHHH-------H------------HHhCCCcchhH-H-HHHHHHHHHhc-----
Confidence 665555443 4555433 23333322211 0 11111100000 0 00000000000
Q ss_pred cccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHH--HHhhhcCCCCCC---ccccChhhHHh
Q 039312 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGI--LQAIQMNKSVGP---HFKMPPAWMNI 373 (579)
Q Consensus 299 ~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g---~~~~~~~~~~~ 373 (579)
........+.... +....|+-...... + ...+|+.+.+. .+...+-.+.|- .-...+..++.
T Consensus 250 ----~~~~~~~sl~~~~--~~~~lR~~~~i~~~----v---~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 250 ----LEKKKQISLRQLL--KNPTLRRPLLIGIV----V---SFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred ----cccccCCcHHHHh--cCcchhHHHHHHHH----H---HHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0000011110000 00011111111111 1 12223222111 111111111110 00011223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHH
Q 039312 374 TSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQ 453 (579)
Q Consensus 374 i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 453 (579)
++.+..++...+ .+|.+|| ..+..+..++.++.+............. .-.++..++..
T Consensus 317 v~~~~t~~~~~l--------id~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~y~~i~~~ 374 (485)
T KOG0569|consen 317 VNLLSTLVSPFL--------IDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSFG-------SWLSYLCIAAI 374 (485)
T ss_pred HHHHHHHHHHHH--------HHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHH
Confidence 444444444444 4443322 5666666666666555544432211110 00112223334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcChH----HHHHHHHHHH
Q 039312 454 YALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL----GAVNFVYFSF 529 (579)
Q Consensus 454 ~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~w~----~~l~~l~~~~ 529 (579)
+.+....+....|..|-+.+|.+|.+.|+.++++....+++.+++.....+.+++..+ .|. .+.+.+..++
T Consensus 375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----~~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----PYVFILFVIPLAIFLIY 449 (485)
T ss_pred HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHHH
Confidence 4455556666789999999999999999999999999999999999999998888775 233 3444444455
Q ss_pred hhcccccccccc
Q 039312 530 FASHFVVNTTVA 541 (579)
Q Consensus 530 ~~~~~~~~~~~~ 541 (579)
+.+...++|+++
T Consensus 450 ~~~~lPETkgr~ 461 (485)
T KOG0569|consen 450 LYRYLPETKGRT 461 (485)
T ss_pred HHHhCcccCCCC
Confidence 555566666544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=174.44 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
+.+...+..++.....+...+.++.++++++|+|..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 34555666666666677777777767999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.+++.++. .+++.++++|+++|++.+.. +...++++|.+++ ++|++..+++.
T Consensus 81 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~------~~r~~~~~~~~ 132 (366)
T TIGR00886 81 CLWAGLAV---------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK------KIQGTALGLAA 132 (366)
T ss_pred HHHHHHHh---------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH------hhhhHHHHHHH
Confidence 88877754 04566888999999996654 5567889999984 34566777777
Q ss_pred HHHHHHHHHHHHHHhhhcc----------ccchhHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQT----------NVSWVLGFAI 215 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~----------~~g~~~~f~i 215 (579)
...++|..+++.+++.+.. ..+|++.|++
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 6677777777776655443 2479999843
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-17 Score=170.43 Aligned_cols=330 Identities=10% Similarity=0.053 Sum_probs=204.1
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (579)
.....+.+.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+.+ .+.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~--------- 85 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP--------- 85 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc---------
Confidence 333445566788999999999999999999999999999999999 899999999988877777665 333
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039312 124 CGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l 203 (579)
+...+++.|++.|++.+...+..+..+.|.+++ +|+++.++++.+.++|..+++.+++.+
T Consensus 86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998888888888887762 356778888888999999999998888
Q ss_pred cccc--chhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCcccccccc
Q 039312 204 QTNV--SWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKR 281 (579)
Q Consensus 204 ~~~~--g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (579)
.+.. +||..|.+.++..++....+. ++.+++++.+++ ...
T Consensus 146 ~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------~~~---------------- 187 (355)
T TIGR00896 146 AQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQT-------------------TTR---------------- 187 (355)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCC-------------------CCC----------------
Confidence 7654 399888766544333322211 111110000000 000
Q ss_pred CcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhh-hHHHHHHHHHHhhhccchHHHHHhhhcCCCC
Q 039312 282 TNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAIL-PVCVSGIACFISMDQQNTFGILQAIQMNKSV 360 (579)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
..+++. ..+ +...... ...+....++......+ .+. +..+.+.
T Consensus 188 --------------------------~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lp-~~~-~~~g~~~-- 231 (355)
T TIGR00896 188 --------------------------LTPVRI-----WRS-PLAWQVTVFFGLQSGLYYSLIGWLP-AIL-ISHGASA-- 231 (355)
T ss_pred --------------------------CCCchh-----hcC-HhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHcCCCH--
Confidence 000000 001 1111111 11111111111111111 111 1111111
Q ss_pred CCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039312 361 GPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDS 440 (579)
Q Consensus 361 ~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~ 440 (579)
...+.+..+..++.++..++.+++ .+|+.++ ...+..+.++.+++.+......
T Consensus 232 -----~~~g~~~~~~~~~~i~~~~~~g~l----~dr~~~~------~~~~~~~~~~~~~~~~~~~~~~------------ 284 (355)
T TIGR00896 232 -----ATAGSLLALMQLAQAASALLIPAL----ARRVKDQ------RGIVAVLAVLQLVGLCGLLFAP------------ 284 (355)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhHHHH----Hhhhccc------hHHHHHHHHHHHHHHHHHHHhh------------
Confidence 123345555566666777776665 4443221 2445566666666665554432
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 441 FVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQM-PESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 441 ~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~-P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
....++ ..++.+++.+...|...+...+.. +++.++...++.+....+++.++|.+.+.+.+.++
T Consensus 285 ----~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 ----MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ----hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 345678888888888878776554 46778999999888888899999999999887764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=196.68 Aligned_cols=332 Identities=11% Similarity=-0.002 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH---HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhH
Q 039312 62 VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI---ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQF 138 (579)
Q Consensus 62 ~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (579)
...++..+++.+...++.+++|+++|| +|||+++..... +.++..++..... ++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~----------------------s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLN----------------------SV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hH
Confidence 346777888999999999999999999 899997643222 2222212222222 57
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Q 039312 139 CVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTA 218 (579)
Q Consensus 139 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~ 218 (579)
+.++++|+++|++.++..|+..+++.+++++ +++.++.++...+.++|.++||++++++....||++.|...++
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNK------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7899999999999999999999999999995 4467889999999999999999999999988899988855444
Q ss_pred HHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCC
Q 039312 219 CLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPS 298 (579)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (579)
..++++++.+.. ++....++..+..... .+
T Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------------------------------~~--------- 212 (1140)
T PRK06814 183 IAVLGWLASLFI-PKTGNAAPDLKIDRNI----------------------------------------IR--------- 212 (1140)
T ss_pred HHHHHHHHHhhC-CCCCCCCCCCeeccch----------------------------------------HH---------
Confidence 444443333322 2111100000000000 00
Q ss_pred cccccCCCCCCCccccchhHHHHHHHHHh---hhhHHHHHHHHHHhhhccch---HHHHHhhhcCCCCCCccccChhhHH
Q 039312 299 HELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILPVCVSGIACFISMDQQNT---FGILQAIQMNKSVGPHFKMPPAWMN 372 (579)
Q Consensus 299 ~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ 372 (579)
+..+..+...+ .....+....++..+....+ .+..+..+.+. ...+.+.
T Consensus 213 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~-------~~~g~~~ 267 (1140)
T PRK06814 213 ------------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDE-------NVATLFL 267 (1140)
T ss_pred ------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch-------HHHHHHH
Confidence 00000010000 11111111111111111111 11111111111 1234555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcC--CCCCccchHH
Q 039312 373 ITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRE-LALKHD--SFVSPMSLLT 449 (579)
Q Consensus 373 ~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~ 449 (579)
....++.+++..+..++ .++.. ....+..+.++.+++.+.+.+...+... ...... .-....+.|.
T Consensus 268 ~~~~~g~~ig~~~~g~l----~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKL----SEGRI-------TLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred HHHHHHHHHHHHHHHHH----hCCce-------eeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 66666777777776655 33321 1122333333333333222221000000 000000 0000123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 450 LLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 450 li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+++.+++.+++.++..+...+++.+.+|++.||+++|+.++.+.++..+++.+.+.+.+
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999999999999999999999999999999999999887764
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=166.74 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=110.9
Q ss_pred HHHHHhHHhcC--CchhHHHHHHHH--HH---HHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 039312 48 NITVYLQNNYN--LGGVLLVNIVTI--WS---GSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLR 120 (579)
Q Consensus 48 ~~~~y~~~~l~--~s~~~~~~i~~~--~~---~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (579)
+...++.+++. .+..+.+.+.+. +. +...++.++.|+++|| +|||++++++.++..++..++.++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 45566665544 334444444433 22 2234678999999999 89999999999999999888887652211
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039312 121 PSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~ 200 (579)
...+....++++|+++|++.+...+...+++.|.+++ ++|+...+..+.+..+|..+++.++
T Consensus 91 ------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~G~~i~~~~~ 152 (394)
T TIGR00883 91 ------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP------GKRGFYGSFQQVGAPVGLLLAALTV 152 (394)
T ss_pred ------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0001234688999999999999999999999999984 3456677777778888988888876
Q ss_pred hhhc--------cccchhHHHHHHHHHHHHHH
Q 039312 201 VYIQ--------TNVSWVLGFAIPTACLAFSI 224 (579)
Q Consensus 201 ~~l~--------~~~g~~~~f~i~~~~~~~~~ 224 (579)
..+. +.++||+.|++.++..+++.
T Consensus 153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 5543 35689999988766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-16 Score=164.82 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHH
Q 039312 34 NETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLT 113 (579)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~ 113 (579)
..+...+.. ++...+.+.+++++|++..+.+++.+.+..+..++.+++|++.|| +|||++++++.++..++..++..+
T Consensus 11 ~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~ 88 (410)
T TIGR00885 11 LFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPA 88 (410)
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 455555577799999999999999999999999999999999999 899999999999999998776544
Q ss_pred hhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 039312 114 AGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVAL 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 193 (579)
.. ..+++.++++|++.|+|.|...+...+++.+..++ +++++..+..+...++|.
T Consensus 89 ~~-------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lG~ 143 (410)
T TIGR00885 89 AE-------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE------STATRRLNLAQSFNPFGS 143 (410)
T ss_pred Hh-------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH------hHHHHHHHHHHHHHHHHH
Confidence 31 12577889999999999999999999999888774 224455677777788999
Q ss_pred HHHHHHHhhhcc--------------------------ccchhHHHHHHHHHHHHH
Q 039312 194 VVVLTGVVYIQT--------------------------NVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 194 ~i~~~~~~~l~~--------------------------~~g~~~~f~i~~~~~~~~ 223 (579)
.++|.+++.+.. ..+||++|++.++..++.
T Consensus 144 ~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~ 199 (410)
T TIGR00885 144 IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV 199 (410)
T ss_pred HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888776632 136999998776654443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-15 Score=164.80 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-----ChhHH-HHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-----GRFRT-LLV 98 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-----Gr~~~-l~~ 98 (579)
+|.....+++.+......+.....++.++. +.|.+..+.+... ..... +++.++.|.++|| + ||||. +++
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 445666667777777777766677777765 5699999998862 22233 4688999999999 8 99986 556
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQL 178 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (579)
+.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+ ++|
T Consensus 87 ~~i~~~~~~~~~a~~~--~-----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~------~~r 141 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE--P-----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA------EER 141 (491)
T ss_pred HHHHHHHHHHHHHHcC--C-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------hhh
Confidence 6666666666666643 1 12566788889999999999999999999999984 346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcc-ccchhHHHHHHHHHHHHHHHHHH
Q 039312 179 ESFFNWWYFSFTVALVVVLTGVVYIQT-NVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 179 ~~~~~~~~~~~~ig~~i~~~~~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+++.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 777888888899999999999998888 57999999988776555544333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-16 Score=162.45 Aligned_cols=158 Identities=11% Similarity=0.107 Sum_probs=116.9
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc----cChhHHH-HHHHHHHHHHHHHHHHHhhhcc
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY----LGRFRTL-LVGSIASLLGMLMMTLTAGIHQ 118 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~~l-~~~~~~~~~~~~~~~~~~~~~~ 118 (579)
++.....+.+.+++|+|..+.++.... .....+ .++.|.++||+ +||||.+ +.+.++..+....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 344555666677899999999999655 344444 88999999993 2999975 455666666655555432
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 039312 119 LRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLT 198 (579)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~ 198 (579)
+..+.+.++...++.+++.+...+...+++.|++|+ ++|+.+.++...+.++|.++++.
T Consensus 79 ---------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~r~~~~~~~~~~~~~G~~~~~~ 137 (356)
T TIGR00901 79 ---------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD------EELGYGSTIYIVGYRAGMLLSGS 137 (356)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhchHHHHHHHHHHHHHHHHHH
Confidence 112455566666777888888899999999999984 44677888888899999999999
Q ss_pred HHhhhccccc--------hhHHHHHHHHHHHHHHHHHH
Q 039312 199 GVVYIQTNVS--------WVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 199 ~~~~l~~~~g--------~~~~f~i~~~~~~~~~~~~~ 228 (579)
+++++....| ||..|++.++..+++++..+
T Consensus 138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9988877777 99999988876665544433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-15 Score=160.16 Aligned_cols=413 Identities=12% Similarity=0.052 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhc---ccChhHHHHHH-HHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDA---YLGRFRTLLVG-SIAS 103 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr---~~Gr~~~l~~~-~~~~ 103 (579)
+..+..+.+...+++-....++++|+ +.+|.+....+.+..+..+...+.+++.|+++|| ++||||.++++ .+..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33344444555666665667777765 6899999999999999999999999999999994 38999998875 5555
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++..++..+.+...+..+. ..........+.+.++..+..++.....+...++++|..|+++ +++..+++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~-----~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~ 155 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDN-----LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANA 155 (477)
T ss_pred HHHHHHHHhCchhhhhcccc-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHH
Confidence 55666666554221110000 0000001122344555555667777788888999999999633 12346788
Q ss_pred HHHHHHHHHHHHHHHHHhhh--ccc-------------cchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYI--QTN-------------VSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMA 248 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l--~~~-------------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (579)
+...+.++|..+|+.++++. .+. .+.+..|++.++..+++.++..+..++....++++.+.+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--- 232 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---
Confidence 88889999999999988764 111 156889999888777776666555444221111000000
Q ss_pred HHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHH-HHHHHh
Q 039312 249 KVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQ-LKCLIA 327 (579)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~k~~~~ 327 (579)
++.+.++. +. ...++++.+ ...+ -|.+.+
T Consensus 233 --------------------~~~~~~~~------~~-----------------------~~~~~~i~~-~~~~mP~~m~~ 262 (477)
T TIGR01301 233 --------------------EAAPPSKH------GE-----------------------EAFFGELFG-AFKYLPRPVWI 262 (477)
T ss_pred --------------------hccccccc------ch-----------------------hhhHHHHHH-HHHHCCHHHHH
Confidence 00000000 00 000000000 0001 123333
Q ss_pred hhhHHHHHHHHHHhhhccchHHHHHhh-hcCCCCCCccccChh-hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCC
Q 039312 328 ILPVCVSGIACFISMDQQNTFGILQAI-QMNKSVGPHFKMPPA-WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLT 405 (579)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~ 405 (579)
++....+...-|..+....+.++-+.. +-+.... -....+ -++....+...+...++..+..++.+|++++
T Consensus 263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~----- 335 (477)
T TIGR01301 263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG----- 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 444444444444455444444433221 1111110 000011 1112212121222223333334445554321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-CCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh--h
Q 039312 406 LQQRIKTGIVMSILCMLVAGSVEKRRRELALKHD--S-FVSPMS-LLTLLPQYALSGLTEAFAAVAIMEFFTNQMPE--S 479 (579)
Q Consensus 406 ~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~--~ 479 (579)
......+.++.++++++..+......+....++ . -..+.. .+..+..+.+.|++....+...++++.+..|+ +
T Consensus 336 -k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~ 414 (477)
T TIGR01301 336 -KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGA 414 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCC
Confidence 244577888888888777765420000000000 0 011112 35667788999999999999999999999995 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 480 MRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 480 ~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
..|.++|+.|++.-+.+.+.....+.+....+
T Consensus 415 ~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 415 GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55999999999999999999988777655544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=160.01 Aligned_cols=365 Identities=11% Similarity=0.042 Sum_probs=233.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
+.++|+++...+.. ...+....+...+.+++.+++|+|+.|.+++.+.-.+...+..++-|.+.|| +|.|++..++.+
T Consensus 10 ~~~~~~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 44567777555543 4445556677788889999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..+-.+.+.++... .+++.+++.+++.|++.|-+ +...+.++.+||+ +..+.+
T Consensus 88 l~~IP~~~~~~a~~~-------------------~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~------~~qG~A 141 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------PSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPK------EKQGLA 141 (417)
T ss_pred HHHHHHHHHHHHccC-------------------CchHHHHHHHHHHhccccee-hcccccccccCCh------hhhhHH
Confidence 999988888887622 24577899999999997665 5567889999995 335777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc---hhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhc
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVS---WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKR 258 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 258 (579)
.+++- +.|+|.++...+++++....| |+....+..+.+++..+.+++..+...+.++..++...
T Consensus 142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------------ 208 (417)
T COG2223 142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------------ 208 (417)
T ss_pred HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch------------
Confidence 88877 899999999999999888888 99888877777666555555443321111111100000
Q ss_pred ccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039312 259 CFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIAC 338 (579)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 338 (579)
++.|...+..-.|..+..|
T Consensus 209 -------------------------------------------------------------~~~~~v~~~~~~W~lsllY 227 (417)
T COG2223 209 -------------------------------------------------------------AQLKAVFSNKDTWLLSLLY 227 (417)
T ss_pred -------------------------------------------------------------hHHHHHhcCcchHHHHHHH
Confidence 0011111111122233333
Q ss_pred HHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 039312 339 FISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418 (579)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~ 418 (579)
...|....+.....+.....+.+. .....+.+....++...+.=|+.+++.|++..+ +...+....++
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~-~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~ 295 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGL-SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMA 295 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHH
Confidence 333333333222222222222221 113344555666666667777777775544333 44555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHH
Q 039312 419 LCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYV 498 (579)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l 498 (579)
++......... ......+.+..+..++..+++.++-+...+-.+..+.|+ +-|...|+.....++|++.
T Consensus 296 ~~~~~l~~~~~----------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 296 LAAALLSLFLT----------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHcccc----------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence 55544444320 000012223333334444555555555556666666665 5788899999999999999
Q ss_pred HHHHHHHhhcccc
Q 039312 499 SSLVINIIHRVTK 511 (579)
Q Consensus 499 ~~~l~~~v~~~~~ 511 (579)
-|...+...+.++
T Consensus 365 lp~~~g~~~~~tg 377 (417)
T COG2223 365 LPLAFGVSLDLTG 377 (417)
T ss_pred hhHHHHHHHHhcc
Confidence 9999998888775
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=156.85 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=139.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhH-HHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVL-LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~-~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
+.|+.+.+.+++..+.+-..- ...++.+|+.+++|++..+ .|.+.+++..++.++.+++|+++|| +|.|+++.++++
T Consensus 23 ~~W~~~~~~lC~fGF~~e~R~-n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l 100 (511)
T TIGR00806 23 KSWRVLVLYLCFYGFMAQFRP-GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQAL 100 (511)
T ss_pred cchhHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHH
Confidence 445544444443333222222 3356778999999999999 9999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
.+.+..+++.++. +...+.+.|++.|++.|+.. +...++..++|+ ++|+++
T Consensus 101 ~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~------kER~ra 151 (511)
T TIGR00806 101 SFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP------SRYQRA 151 (511)
T ss_pred HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH------HHHHHH
Confidence 9999999999987 67789999999999999999 889999999993 557888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHH---HHHHHHHHHHHHHHh
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFA---IPTACLAFSITLFLL 229 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~---i~~~~~~~~~~~~~~ 229 (579)
.++...+.++|.++++++++++ ..+||+.-+. ++.....+++++.++
T Consensus 152 tsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999994 4578886443 444444555444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-14 Score=150.86 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-----ChhH-HHHHHHHHHHH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-----GRFR-TLLVGSIASLL 105 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-----Gr~~-~l~~~~~~~~~ 105 (579)
+.+.+.+.+.+.-...-++.|+++ .|+|..+.|++...... .+..++.|+++|| + |||| .++++.++..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 445556666665566677788764 59999999999666554 6889999999999 7 8876 67777777777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+.+.. ...+.+.+++..++.+++.+...+...+++.|++|+ ++|+++.++.
T Consensus 81 ~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~------~~r~~~~~~~ 135 (402)
T PRK11902 81 SIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP------EERGAGAAVK 135 (402)
T ss_pred HHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------hhhhHHHHHH
Confidence 777666542 012455566666677888888999999999999884 3467777777
Q ss_pred HHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTN-VSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~ 225 (579)
..+.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 136 ~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 136 VLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 778899999999988888775 5999999987776554433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=151.32 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=218.7
Q ss_pred HHhHHHHHHHhHHhcC----CchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 43 MSLISNITVYLQNNYN----LGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQ 118 (579)
Q Consensus 43 ~~~~~~~~~y~~~~l~----~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (579)
|....++.-.+....+ .+..-+|.+-+.|+++..++++.+|.+||| +|||.++++|++...+...+.+.+.
T Consensus 45 ~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~---- 119 (451)
T KOG2615|consen 45 YPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR---- 119 (451)
T ss_pred hHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444455444444333 344568999999999999999999999999 7999999999999999888888877
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 039312 119 LRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLT 198 (579)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~ 198 (579)
++..+.++|++.|+.-|-.. .+.++++|.+++ +.|+.+++....+..+|..+||.
T Consensus 120 ------------------~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~se------k~r~l~ms~v~~a~~lGfilGPm 174 (451)
T KOG2615|consen 120 ------------------NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSE------KYRPLGMSLVGTAFGLGFILGPM 174 (451)
T ss_pred ------------------HHHHHHHHHHhhhhccCchH-HHHHHHHhhcCh------hhccceeeeeehhhhcchhhcch
Confidence 66667888999999988765 448999999996 34567788888889999999999
Q ss_pred HHhhhcc---ccchhHHHHH-HHHHHHHH---HHHHHhccceeeecCCCC---ChhhHHHHHHHHHHHhcccccCCCCCC
Q 039312 199 GVVYIQT---NVSWVLGFAI-PTACLAFS---ITLFLLGRRCYIYIKPAG---SVFSDMAKVVVAACRKRCFSVEPGCEH 268 (579)
Q Consensus 199 ~~~~l~~---~~g~~~~f~i-~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (579)
+++++.. ..|- .+|.. +....+++ +..+.+..|+..+.+.+. ++..+..
T Consensus 175 IGgyla~f~~~~g~-~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~-------------------- 233 (451)
T KOG2615|consen 175 IGGYLAQFSSISGS-YPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAA-------------------- 233 (451)
T ss_pred hhhHHHhhHhhhcc-CchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhh--------------------
Confidence 9999876 2222 22333 22222222 222333334432221111 1110000
Q ss_pred cccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchH
Q 039312 269 NYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTF 348 (579)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (579)
. ++ ......+++++...+- ..|-. +..+.++ ...+.++.|....+.
T Consensus 234 ----~---~~-~~~~~~~~~~~v~~lr------------n~p~~----~~i~~~~----------i~~l~~~ly~~l~s~ 279 (451)
T KOG2615|consen 234 ----D---DR-LALLKFARIFKVAALR------------NPPLL----DFISVLR----------IFGLHYFLYLELFSG 279 (451)
T ss_pred ----h---hh-hhhcchhhhhhhhhhc------------Ccccc----chHHHHH----------HHHHHHHHHHHHHHH
Confidence 0 00 0001111222211110 00000 0011111 111112233332322
Q ss_pred HHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 039312 349 GILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVE 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~ 428 (579)
+-.....++. + .++..+...+-+-....+...++...+ +|..+|..+ .....+..++.++.-.++..+...
T Consensus 280 ~~~t~~~l~~--~-rfg~ss~~~G~vl~~tGl~m~~~ql~~-~~~l~~~~~-----~~~a~l~~~l~~~vP~~llls~~~ 350 (451)
T KOG2615|consen 280 LENTVLFLTH--G-RFGYSSMQQGKVLSTTGLLMLVIQLAL-VPILPRYKG-----NIKAVLLFSLLLIVPAFLLLSLAR 350 (451)
T ss_pred HHhhHHHhhc--C-ccCCChhhheeeeehhhHHHHHHHHhc-ccccccccc-----chhhHHHHHHHHHHHHHHHHhccc
Confidence 2222222211 1 133555544444444445554544333 343444211 123334444444433333333332
Q ss_pred HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 429 KRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
...++.....+.+++.....+.....+.+..|.+.||+.+|+.....+++.++||++.+.+..
T Consensus 351 -----------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 351 -----------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred -----------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 223566677889999999999999999999999999999999999999999999999988776
Q ss_pred cccccCCcChH--HHHHHHHHHHhhcccccc
Q 039312 509 VTKRTGNSPWL--GAVNFVYFSFFASHFVVN 537 (579)
Q Consensus 509 ~~~~~~~~~w~--~~l~~l~~~~~~~~~~~~ 537 (579)
+.... ...|. ..+.++. ....++++.+
T Consensus 414 Ws~~~-~~a~~~~~~L~~~~-~~l~qr~s~p 442 (451)
T KOG2615|consen 414 WSQGA-QPAYIAWGALLLIP-MMLLQRLSIP 442 (451)
T ss_pred EecCC-CceeeehHHHHHHH-HHHHHhhcCC
Confidence 65321 12344 2222222 4445555554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-15 Score=160.11 Aligned_cols=364 Identities=11% Similarity=0.051 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhh----cccChhH-HHHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSD----AYLGRFR-TLLVGSIASLLGM 107 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~-~l~~~~~~~~~~~ 107 (579)
+..+..++.+..+..+++.|+++.+|+++..+|.+..+.-+...+..|+.|+++| | +|||| -++++.+...++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence 3445566777777889999999999999999999999999999999999999999 5 69854 4556666666666
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.++.... .. ++......+++..++.+++.........++.+|..++ + ++|.+..++.+.
T Consensus 92 ~llf~~p---~~-------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~--~---~eR~~l~~~~~~ 150 (473)
T PRK10429 92 FLLFSAH---LF-------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD--K---REREQLVPYPRF 150 (473)
T ss_pred HHHHcCC---CC-------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC--H---HHHHHHHHHHHH
Confidence 5554322 10 0112344555566667788888888888999998765 2 345666776666
Q ss_pred HHHHHHHHHHHHHhhh----cc---ccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 188 SFTVALVVVLTGVVYI----QT---NVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l----~~---~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
..++|+.+.+.+...+ .. ..+|+....+.++..+++.+..+...++... ++..++
T Consensus 151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~----------------- 212 (473)
T PRK10429 151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS----------------- 212 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc-----------------
Confidence 6677766655443322 11 1246655555554444333333322222100 000000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
+++ + +.+++........+ |.+.. ++....+++.
T Consensus 213 --~~~-----------------~------------------------~~~~~~~~~~~~~n-~~~~~---ll~~~~~~~~ 245 (473)
T PRK10429 213 --AEG-----------------S------------------------HLTLKDIVALIYKN-DQLSC---LLGMALAYNI 245 (473)
T ss_pred --ccc-----------------c------------------------CCCHHHHHHHHhcC-HHHHH---HHHHHHHHHH
Confidence 000 0 00000000000011 22111 1111222221
Q ss_pred hhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILC 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~ 420 (579)
......+...+..... .+. ......+..+..+..++..++..++ .+|+++| +.+..++++.+++
T Consensus 246 ~~~~~~~~~~y~~~y~---~~~--~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~gkk-------~~~~~~~~~~~~~ 309 (473)
T PRK10429 246 ASNIINGFAIYYFTYV---IGD--ADLFPYYLSYAGAANLVTLILFPRL----VKSLSRR-------ILWAGASIFPVLS 309 (473)
T ss_pred HHHHHhhheeeEEEEE---CCC--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCcH-------HHHHHHHHHHHHH
Confidence 1111111111111110 110 0011223334445556666666555 5554332 4455555555544
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------hhhHHHHHHHHHHHHH
Q 039312 421 MLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP-------ESMRTVAGAAFFLSLS 493 (579)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ 493 (579)
.+....... ..+.+.+.+++..++.+++.+...+..+++..|..+ ++..|...|++++..-
T Consensus 310 ~~~~~~~~~------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 310 CGVLLLMGL------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred HHHHHHHhc------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 443332110 001234455566677889999999999999998866 4446778899999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 039312 494 VASYVSSLVINIIHRVTK 511 (579)
Q Consensus 494 ig~~l~~~l~~~v~~~~~ 511 (579)
+|..+++.+.+.+.+..+
T Consensus 378 ~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 378 GGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999988876554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-15 Score=157.39 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc---cChhHH-HHHHHHHHHHHHHH
Q 039312 34 NETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY---LGRFRT-LLVGSIASLLGMLM 109 (579)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~-l~~~~~~~~~~~~~ 109 (579)
..+..+..+..+..+++.|+++.+|++..++|.+..+..+...+..|+.|+++||. +||||- ++++.+...++..+
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 34555666666778899999999999999999999999999999999999999982 577555 55666666666655
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+...+ .+ ........+++..++.+.+..+......++.+|..++ + ++|.+..++.....
T Consensus 97 ~f~~p---~~-------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~---~eR~~l~~~r~~~~ 155 (444)
T PRK09669 97 TFYTP---DF-------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--P---RERHSLQSWRFALS 155 (444)
T ss_pred HHhCC---CC-------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--H---HHHHHHHHHHHHHH
Confidence 44432 10 0112445566666667777767777778889998765 3 33556666666667
Q ss_pred HHHHHHHHHHHh----hhcc---ccchhHHHHHHHHHHHHHHH
Q 039312 190 TVALVVVLTGVV----YIQT---NVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 190 ~ig~~i~~~~~~----~l~~---~~g~~~~f~i~~~~~~~~~~ 225 (579)
++|..+++.+.. ++.. ..||+..+.+.++..++..+
T Consensus 156 ~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 156 FIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 777777665433 2321 24677777666655444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-14 Score=148.42 Aligned_cols=357 Identities=14% Similarity=0.144 Sum_probs=192.6
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhh
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~ 115 (579)
++.-+.+-...++++.|+++ .|+|..|.|.+.+...+...+++++.|+++||...+||.+.+..++..+...+.....
T Consensus 12 f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~- 89 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS- 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 33334444456788888875 6899999999999999999999999999999943466777665555554443333333
Q ss_pred hcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 039312 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i 195 (579)
+++.+++..++..+......|...++.-+...+ ++ .-|+-.+..+++|.++
T Consensus 90 ---------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~------~~YG~iRlwGSiGf~~ 140 (400)
T PF03825_consen 90 ---------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RG------KDYGRIRLWGSIGFIV 140 (400)
T ss_pred ---------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--cc------CCCCcchhhhhHHHHH
Confidence 455566666667777777677766666565543 11 1255555556677777
Q ss_pred HHHH-Hhhhccccc---hhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCccc
Q 039312 196 VLTG-VVYIQTNVS---WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYY 271 (579)
Q Consensus 196 ~~~~-~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 271 (579)
+.+. ++++....+ ....+++.+...++.. .+.+..|+.+.++..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~~~~~~~~~~~~-------------------------- 193 (400)
T PF03825_consen 141 AALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKTPPKRSAKESVK-------------------------- 193 (400)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCCccccccCCCcc--------------------------
Confidence 6443 222322222 2334555444332222 22222232211000000000
Q ss_pred CCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHH
Q 039312 272 DPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGIL 351 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (579)
+....+ .|+. ..+.+.....+..++..+... .++...+.+.
T Consensus 194 ------------~~~~~~--------------------~~~l-----lk~~~~~~Fll~~~l~~~~~~-~~~~f~~~yl- 234 (400)
T PF03825_consen 194 ------------KLLGLD--------------------ALKL-----LKNPRFLVFLLAAFLIGISHA-AYYTFFSIYL- 234 (400)
T ss_pred ------------cccchH--------------------HHHH-----hcCccHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 000000 0000 001111111111111111111 1111111111
Q ss_pred Hhhh-cCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 352 QAIQ-MNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR 430 (579)
Q Consensus 352 ~~~~-~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~ 430 (579)
+..+ ... ...+....+..+.-++.-.+.+ ++.+|+ +..+.+.++++..++-..+.+....
T Consensus 235 ~~~gg~~~-------~~~g~~~~l~~~aEi~~f~~~~----~~~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~~- 295 (400)
T PF03825_consen 235 QELGGYSG-------STIGILWALGVVAEIPFFFFSG----RFLKRF-------GIKWLLLLALVAYAVRWLLYAYFSD- 295 (400)
T ss_pred HHcccchh-------hHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 1111 100 1122223333333333333333 335553 5668888888888888877776520
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 039312 431 RRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFF-LSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~l~~~v~~~ 509 (579)
+....+..+.....+.|+..++...+...|+.+.+|++.|++++++++ +..++|+.+|..+.|.+.+.
T Consensus 296 -----------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 296 -----------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred -----------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 000111122233457999999999999999999999999999999975 46789999999999999887
Q ss_pred ccccCCcChH
Q 039312 510 TKRTGNSPWL 519 (579)
Q Consensus 510 ~~~~~~~~w~ 519 (579)
.+..+-..|.
T Consensus 365 ~g~~~~~~~~ 374 (400)
T PF03825_consen 365 FGARGMFDWS 374 (400)
T ss_pred hcchhhhhHH
Confidence 6544333343
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-14 Score=152.41 Aligned_cols=352 Identities=8% Similarity=0.056 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc---cChhHHH-HHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY---LGRFRTL-LVGSIASLLGML 108 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~l-~~~~~~~~~~~~ 108 (579)
+..+..+..+..+..+++.|+++.+|++..++|.+.+...+...+..++.|+++||. +||||.+ .++.+...+...
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 355566777777778888999999999999999999999999999999999999992 3777755 455554444444
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH-
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF- 187 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 187 (579)
++.... ... ........+++..++.+++.+...+...++..+...+ +++ |.+..++...
T Consensus 95 ~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~---r~~~~~~r~~~ 154 (448)
T PRK09848 95 LVFWVP--TDW-------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ--PQS---RARLGAARGIA 154 (448)
T ss_pred HHHhCc--CCC-------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC--HHH---HHHHHHHHHHH
Confidence 432211 000 0111334445555677888888888778877776665 222 3344333322
Q ss_pred ----HHHHHHHHHHHHHhhhcccc--chhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccc
Q 039312 188 ----SFTVALVVVLTGVVYIQTNV--SWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFS 261 (579)
Q Consensus 188 ----~~~ig~~i~~~~~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (579)
..+++..++|.+.+...... +|.....+.++..++...+.....++...+ +.+++ .
T Consensus 155 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~-~~~~~--~--------------- 216 (448)
T PRK09848 155 ASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR-IVAQP--S--------------- 216 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC-CccCC--C---------------
Confidence 24566666776665432211 121111111111111111111111111000 00000 0
Q ss_pred cCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh---hhhHHHHHHHH
Q 039312 262 VEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILPVCVSGIAC 338 (579)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~ 338 (579)
. .++.|.+++ ...+.+...+.
T Consensus 217 -------------------------~-------------------------------~~~~~~l~~n~~f~~~~~~~~~~ 240 (448)
T PRK09848 217 -------------------------L-------------------------------KISLQTLKRNRPLFMLCIGALCV 240 (448)
T ss_pred -------------------------H-------------------------------HHHHHHHhCCchHHHHHHHHHHH
Confidence 0 000111111 11111111112
Q ss_pred HHhhhccchHHHHHhhhcCCCCCCccccCh--hhHHhHH-HHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHH
Q 039312 339 FISMDQQNTFGILQAIQMNKSVGPHFKMPP--AWMNITS-MLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIV 415 (579)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~i~-~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~ 415 (579)
+..+........+ ......+ .++ ..+...+ .+..++..++..++ .+|+ +..+.+.+|.+
T Consensus 241 ~~~~~~~~~~~~~---~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~r~-------g~~~~~~~g~~ 302 (448)
T PRK09848 241 LISTFAVSASSLF---YVRYVLN----DTGLFTVLVLVQNLVGTVASAPLVPGM----VARI-------GKKNTFLIGAL 302 (448)
T ss_pred HHHHHHHhhhhee---eEeeecC----ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHHHHH
Confidence 2222221111111 1111111 111 1111222 33445555665544 4553 33366777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChh-------hHHHHHHHH
Q 039312 416 MSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPES-------MRTVAGAAF 488 (579)
Q Consensus 416 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~-------~rg~~~gi~ 488 (579)
+.+++.+...+.. ..+.+++++..++.++++.+..+..++...+..|.+ .+|.+.|++
T Consensus 303 ~~~i~~~~~~~~~---------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 303 LGTCGYLLFFWVS---------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHHHHHHHHHcC---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 7777665544321 123455566678889999999999999999888754 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 039312 489 FLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 489 ~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
++.+.+|..+++.+.+.+.+..+
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999888766554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=138.83 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=119.4
Q ss_pred HHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 039312 41 ASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLR 120 (579)
Q Consensus 41 ~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (579)
.....+-.+.+.+++.++++..|++++..++..++.+..++.|++.+| +|+|+.+++|+.++.+|..+++=++
T Consensus 27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa------ 99 (422)
T COG0738 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAA------ 99 (422)
T ss_pred HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhh------
Confidence 334566778899999999999999999999999999999999999999 8999999999999999998887544
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039312 121 PSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~ 200 (579)
...++..++++.++.+.|.|...++..++++...+++...+| ++..+....+|+.++|+++
T Consensus 100 -------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r------lnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 100 -------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR------LNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred -------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH------HHHHHHhhhhHHHHHHHHH
Confidence 233788899999999999999999999999999997544443 5555556789999999999
Q ss_pred hhhcc
Q 039312 201 VYIQT 205 (579)
Q Consensus 201 ~~l~~ 205 (579)
+++..
T Consensus 161 ~~lil 165 (422)
T COG0738 161 SSLIL 165 (422)
T ss_pred HHHHH
Confidence 88765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=153.10 Aligned_cols=379 Identities=12% Similarity=0.077 Sum_probs=217.3
Q ss_pred chhH-HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccC-----hhHHHHH
Q 039312 25 WRAI-KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLG-----RFRTLLV 98 (579)
Q Consensus 25 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~l~~ 98 (579)
++.. ..+....+.+.+. +.+...+.+++++++|++..+.+...+...+...+-++ +|.++|| ++ ||+.+++
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHH
Confidence 3433 3444577888888 77778888999999999999999999988888888766 9999999 77 6776766
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQL 178 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (579)
+.++.. ...+..++. . +.......+.+++.+++.+......-++..|..+ +++ +.+
T Consensus 101 ~~~l~~-~~~~~~l~~-~------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~ 156 (468)
T TIGR00788 101 SGLLGS-AILYGLLPG-K------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAG 156 (468)
T ss_pred HHHHHH-HHHHHhccc-c------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcC
Confidence 665542 112222221 0 1123334446778899999999999999999988 322 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhc
Q 039312 179 ESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKR 258 (579)
Q Consensus 179 ~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 258 (579)
+...++.+...++|..+++.++|.+.+.++|+..|++.++..++..+...+..++.....++..+..... .
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~---------~ 227 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN---------M 227 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh---------h
Confidence 4556666667889999999999999998899999998877666554333333221100011100000000 0
Q ss_pred ccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh---hhhHHHHH
Q 039312 259 CFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILPVCVSG 335 (579)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~ 335 (579)
. . ......+.. .+...+.+..++ .....++.
T Consensus 228 ~------------------~----~~~~~~~~~------------------------~~~~~~l~~~l~~~~i~~~l~fi 261 (468)
T TIGR00788 228 A------------------L----LTLGVLANV------------------------KVQILGLRGAIQLLEIAKPLIFI 261 (468)
T ss_pred h------------------h----hhhhHHHHH------------------------HHHHHHHHHHHhcHHHHHHHHHH
Confidence 0 0 000000000 000001111111 11111111
Q ss_pred HHHHHhhhccc-hHHHHHhhhcCCCCCCccccChh---hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHH
Q 039312 336 IACFISMDQQN-TFGILQAIQMNKSVGPHFKMPPA---WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIK 411 (579)
Q Consensus 336 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~---~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~ 411 (579)
.+.+....... ..+..+. ...| .++. ....+..++.++...+.+++ .+| .+..+.+.
T Consensus 262 fl~~~~~~~~~~~~f~~~~----~~lG----~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~l~ 322 (468)
T TIGR00788 262 FLSYANLPGASGSVFCATT----QCLP----GGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLLFG 322 (468)
T ss_pred HHHHhhcCCCCceeEEEEc----ccCC----CCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHHHH
Confidence 11011111111 1000000 0111 2333 33344445555555555444 333 35556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 039312 412 TGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLS 491 (579)
Q Consensus 412 ~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~ 491 (579)
++.++.+++.+...... .+-+. .. ..+ +.+++....++.+++.++...+...++.+.+|++.+|+..|+.+..
T Consensus 323 ~~~~l~~~~~~~~~~l~-~~~~~--~~---gi~-~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 323 VTTLLYTLSSLFDLILV-KRWNL--AF---GIS-DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred HHHHHHHHHHhCceeee-ecccc--cc---CCC-CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence 77777766654322110 00000 00 001 1233444567778888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 039312 492 LSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 492 ~~ig~~l~~~l~~~v~~~~~ 511 (579)
.++|..+++.+++.+.+..+
T Consensus 396 ~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 396 LHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999998888877654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-14 Score=152.91 Aligned_cols=356 Identities=11% Similarity=0.059 Sum_probs=219.8
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhh----cccChhHHHH-HHHHHHHHHHHHH
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSD----AYLGRFRTLL-VGSIASLLGMLMM 110 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~~l~-~~~~~~~~~~~~~ 110 (579)
+...+.+.....++..|+++.+|+++...+.+..+..+..++..|+.|+++| | +||||-.+ +|.+...++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4445555556678899999999999999999999999999999999999999 7 89877655 6677777777777
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (579)
.... |.- .........+++..++..++.........++.+|..++. ++|.+..++......
T Consensus 90 f~~~--p~~------------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~-----~~R~~l~~~~~~~~~ 150 (428)
T PF13347_consen 90 FSPP--PAG------------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDP-----DERTRLSSWRMIFSM 150 (428)
T ss_pred hccc--cch------------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccH-----hhhhhHHHHHHHHHH
Confidence 6542 100 001123445577777788999999888899999998862 235566666555666
Q ss_pred HHHHHHHHHHhhh----ccc---cchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccC
Q 039312 191 VALVVVLTGVVYI----QTN---VSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVE 263 (579)
Q Consensus 191 ig~~i~~~~~~~l----~~~---~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (579)
+|..+...+.+.+ .+. .+|++..++.++..+++.++..+..|+... +..+++
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~-~~~~~~-------------------- 209 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV-EVTEQE-------------------- 209 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc-cccccc--------------------
Confidence 6665444444433 322 168877777666555554444444333000 000000
Q ss_pred CCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 039312 264 PGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMD 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 343 (579)
+..++.+ .++.+ .++ |.+.. +++...+.+....
T Consensus 210 -------------------~~~~~~~--------------------~~~~~----~~n-r~~~~---l~~~~~~~~~~~~ 242 (428)
T PF13347_consen 210 -------------------KKISLRD--------------------SLRSL----FRN-RPFRI---LLLAFFLQWLAFA 242 (428)
T ss_pred -------------------ccccccc--------------------chhhh----ccc-chHHH---HHHHHHHHHhhhh
Confidence 0000000 00000 001 11111 1122222222222
Q ss_pred ccchHHHHHhhh-cCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 039312 344 QQNTFGILQAIQ-MNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCML 422 (579)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l 422 (579)
...+...+.... +..+ . ....+..+..+..++..|+..++ .+|+++| +.+..+.++.+++.+
T Consensus 243 ~~~~~~~y~~~~vl~~~-~-----~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 243 LMNTFLPYYFTYVLGNE-G-----LISIFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFL 305 (428)
T ss_pred hhhhHHHHHHHHHhcCc-h-----hhHHHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHH
Confidence 222222222111 1111 0 12344455666667777777665 6665433 567777777777777
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh-------hhHHHHHHHHHHHHHHH
Q 039312 423 VAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPE-------SMRTVAGAAFFLSLSVA 495 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~-------~~rg~~~gi~~~~~~ig 495 (579)
...+... .+.+++.+..++.+++....++..+++..|..+. +..|...|++++..-++
T Consensus 306 ~~~~~~~---------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 306 LLFFLGP---------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred HHHHHHh---------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 6665531 2566778888999999999999999999988763 45699999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 039312 496 SYVSSLVINIIHRVTK 511 (579)
Q Consensus 496 ~~l~~~l~~~v~~~~~ 511 (579)
..+++.+.+.+.+..+
T Consensus 371 ~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999988776654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-13 Score=140.08 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHH--HHHHHHHHHhhhhh-HHHhhcccChhHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIV--TIWSGSNNITSLLG-AFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~--~~~~~~~~~~~~~~-G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
+..+....+.+.+.+..+...++.|++ +.|+|..+.|... ........+..++. ++.+|| +||||.+++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 344556777777777777788877776 5699999999973 44456665666655 668999 899999766653322
Q ss_pred H-HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 105 L-GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 105 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
. ....+.... +. ......+.....+.++..+...+...++..|..++ +.++...+
T Consensus 81 ~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~------~~~~~~~~ 136 (390)
T TIGR02718 81 SACLASLALVG--PD----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG------RTLAKGNA 136 (390)
T ss_pred HHHHHHHHcCC--cc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhhHHHH
Confidence 2 122222111 10 01122333444445556666666655555555442 23344445
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
....+..+|..+++...+++.+..||+.+|++.++..++..+..++
T Consensus 137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555668899999888888888899999999888766655444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=147.03 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=122.6
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 039312 54 QNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQP 133 (579)
Q Consensus 54 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (579)
.+++|+...+.+.+.++|.++++++.+++|.+.|| +.-.+.+....+.+.+-.++.....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~------------------- 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH------------------- 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 46788999999999999999999999999999999 7977777766666655554544444
Q ss_pred CchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh------cccc
Q 039312 134 QGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI------QTNV 207 (579)
Q Consensus 134 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l------~~~~ 207 (579)
+++.+.+.|+++|+..++.+|+...+++.+|.+ ++|+.-+++++...++|.++|.++...+ ....
T Consensus 133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 677899999999999999999999999999995 4456678888888899999998888775 2346
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccce
Q 039312 208 SWVLGFAIPTACLAFSITLFLLGRRC 233 (579)
Q Consensus 208 g~~~~f~i~~~~~~~~~~~~~~~~~~ 233 (579)
|||+.|++.++..++..++.++..|.
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecC
Confidence 89999999988766665555554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-13 Score=147.74 Aligned_cols=141 Identities=17% Similarity=0.122 Sum_probs=121.6
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 039312 54 QNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQP 133 (579)
Q Consensus 54 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (579)
.+..+.+........+++.++..+++++.|.++|| +|||+++++++++..++.++.+++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~------------------- 169 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP------------------- 169 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence 35677888899999999999999999999999999 8999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Q 039312 134 QGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGF 213 (579)
Q Consensus 134 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f 213 (579)
++..+.+.|++.|++.++...+...+++|.+++ +.|+.+.++ ......++.+++..++++.. +||+.+
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~ 237 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF 237 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCc------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence 788899999999999999999999999999995 335556666 55667788888888888876 799999
Q ss_pred HHHHHHHHHHHHH
Q 039312 214 AIPTACLAFSITL 226 (579)
Q Consensus 214 ~i~~~~~~~~~~~ 226 (579)
++..+...+.++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 238 WIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766655444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-13 Score=137.75 Aligned_cols=365 Identities=13% Similarity=0.064 Sum_probs=205.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+..+......+..-+++-...++.+.+++++.|+|..+.|.+.++..+...+.+++.|.++|| +|.||-++....+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence 455555555556556666667899999999999999999999999999999999999999999 8977765544333322
Q ss_pred --HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 106 --GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 106 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
+-...... .|.++. + +.++.++.++..+.......+. .|.+.+ +-+++.+-=|+
T Consensus 86 l~~pff~~v~--~pll~~---------------n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~e---r~sr~~~feYG 141 (412)
T PF01306_consen 86 LFGPFFIYVF--GPLLQS---------------N---FWLGAIIGGIYLGLVFNAGVPL-SEAYAE---RVSRRNGFEYG 141 (412)
T ss_dssp TCHHHHHHTH--HHHHHT---------------T----HHHHHHTTTTTTTTTTTHHHH-HHHHHH---HHHHHHSS-HH
T ss_pred HHHHHHHHHH--HHHHHH---------------H---HHHHHHHHHHHHHHHHcccchH-HHHHHH---HHHHHhcCCcc
Confidence 22222111 111000 1 2333333344444433333332 255542 11111222244
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccC
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVE 263 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (579)
-.+..+++|.+++..++|.+.+ .+.+..|++.....++..++.+..++...++.+..+. .
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~--------------~----- 201 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA--------------L----- 201 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT--------------S-----
T ss_pred hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc--------------c-----
Confidence 4666788999999999998876 4667788876655444444444333321111000000 0
Q ss_pred CCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHH---HHHHHHhhhhHHHHHHHHHH
Q 039312 264 PGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVE---QLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~k~~~~~~~~~~~~~~~~~ 340 (579)
+.++++. +.+..- ..|+++....+.......+.
T Consensus 202 -----------------------------------------~~~~~~~---~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 202 -----------------------------------------GAKKDKV---SLKDVLSLFKMRNFWFFVLFVIGVAAIYD 237 (412)
T ss_dssp -----------------------------------------SS---------HHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccCCCCC---cHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 0000000 000000 11233333333333334444
Q ss_pred hhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILC 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~ 420 (579)
.+.|....+... ..+.. +.....++..+.+..++=.+++ .+..++.+|. +..+.+.++..++.+-
T Consensus 238 vfdqqf~~y~~~--~f~~~-----~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~ri-------g~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 238 VFDQQFPIYFAS--FFQSA-----GQGNQMYGYLWSVQVFLEALMM-FFSPWLINRI-------GAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHHHHHH--TSSSH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--Hhccc-----ccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhc-------ChHhHHHHHHHHHHHH
Confidence 555444333211 11110 0223344445554433333332 2223446664 4556777777777777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH-HHHHHHHHHHHH
Q 039312 421 MLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA-FFLSLSVASYVS 499 (579)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~ 499 (579)
.+..++.. +++++++.=.+.++-..+......-|+.+.+|++..++...+ +.+..++|..+.
T Consensus 303 i~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 303 IIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp HHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77767664 566777777889998889999999999999999999998888 479999999999
Q ss_pred HHHHHHhhcccc
Q 039312 500 SLVINIIHRVTK 511 (579)
Q Consensus 500 ~~l~~~v~~~~~ 511 (579)
+.+.|.+.|..+
T Consensus 366 s~~~G~lyd~~G 377 (412)
T PF01306_consen 366 SPLAGYLYDRIG 377 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHhhHhhcC
Confidence 999999998775
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-14 Score=150.02 Aligned_cols=399 Identities=12% Similarity=0.045 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHhHH---HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLIS---NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~---~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.+.+..++.++..+++.. .+-..++++++.+..+.+|+.++...+..+..++.+.+.|| +|.|.+.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence 4455555555566665543 23455688999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHH-HHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAA-LTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
|.++..++. +.+.+++. =++.|+|.|..+......++.+|+ ++|+.+.+.
T Consensus 124 g~~lssF~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-------kkR~lA~Gi 174 (509)
T KOG2504|consen 124 GLLLSSFAT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-------KKRALATGI 174 (509)
T ss_pred HHHHHHHHh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-------HHHHHHHhh
Confidence 999999988 44444444 345799999999888888888887 345666666
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCC-ChhhHHHHHHHHHHHhcccccC
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAG-SVFSDMAKVVVAACRKRCFSVE 263 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~ 263 (579)
-..+..+|..+-|.+..++.+.+|||..+++-+...+-.+......+|......+.+ ++.++ .....
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~---------~~~~~--- 242 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN---------SAASV--- 242 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc---------ccccc---
Confidence 666778888888888888989999999998877666555454455554322221110 00000 00000
Q ss_pred CCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchh-HHH--HHHHHHh--hhhHHHHHHHH
Q 039312 264 PGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQ-QVE--QLKCLIA--ILPVCVSGIAC 338 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~k~~~~--~~~~~~~~~~~ 338 (579)
+..+...............+ ........ .....+.|+....+ ... |. .+++ ...+++....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~-~ll~~~~fl~~~~~~~~ 309 (509)
T KOG2504|consen 243 ESTPKPVELRISERDSGLKK-LSLSNLAT-----------LKRGPDKWRNSPLQAFLSMLDL-SLLKDPKFLLLALSNLF 309 (509)
T ss_pred cccccccccccccCCCCCCc-ccccchhh-----------hhhCCccccccchhhhhhhhhH-HHHcCchHHHHHHHHHH
Confidence 00000000000000000000 00000000 00000011000000 000 00 1111 11111111111
Q ss_pred HHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 039312 339 FISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSI 418 (579)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~ 418 (579)
..+-...+. +......+ +.+ .-+...+.+..+..+..+++-++.+.+.+... .+.......+++..+
T Consensus 310 ~~~g~~~p~--~~l~~~~~-~~g-~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 310 AYLGFNVPF--VYLPSYAK-SLG-LSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAG 376 (509)
T ss_pred HHHHHHHHH--HHHHHHHh-hcC-CChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHH
Confidence 111111111 11111111 111 01111223333333444444444444422111 234455666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHH
Q 039312 419 LCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYV 498 (579)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l 498 (579)
++.++..+.. +.+.++...++.|++.+...........+..+.+.-+.+.|+..+.++++..+
T Consensus 377 l~~~~~p~~~-----------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~ 439 (509)
T KOG2504|consen 377 LARLFLPFAT-----------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV 439 (509)
T ss_pred HHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc
Confidence 7766655553 55677777888899988888888889999999999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 039312 499 SSLVINIIHRVTKR 512 (579)
Q Consensus 499 ~~~l~~~v~~~~~~ 512 (579)
|+.+.+.+.|.+++
T Consensus 440 gpPiag~~~d~tg~ 453 (509)
T KOG2504|consen 440 GPPIAGLLYDITGN 453 (509)
T ss_pred CcccceeeeeccCC
Confidence 99999998888764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-13 Score=141.96 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=113.0
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
.....++.+++|-+ ....|+.+...++..++.++.|.++|. ||||..++.+.++.++|.+.++.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 55668888999875 667888899999999999999999999 8999999999999999999999887
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTN 206 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~ 206 (579)
+...++++-.+.|+|.|.... ....++|..|. +.|..++.......-+....++.++..+..+
T Consensus 130 ----------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~ 192 (599)
T PF06609_consen 130 ----------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPN------KWRGLGLAIASIPFIITTWISPLIAQLFAAH 192 (599)
T ss_pred ----------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhccc------chhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence 566689999999999877654 45568999984 2233334333333333333455555555556
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 039312 207 VSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 207 ~g~~~~f~i~~~~~~~~~~~ 226 (579)
.+|||.|++.++...+++++
T Consensus 193 ~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 193 SGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred CCcchHHHHHHHHHHHHHHH
Confidence 68999999988866655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=144.65 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=132.1
Q ss_pred hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCc
Q 039312 56 NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQG 135 (579)
Q Consensus 56 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (579)
.++-+..+.|++++++.+.+.+..++.|.+.|| +|+|-.+++|+++....++++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 456688899999999999999999999999999 8999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHH
Q 039312 136 WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAI 215 (579)
Q Consensus 136 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i 215 (579)
++..++++|.++|+|.++...+..++++|.||++ .+|++.++..--...+|-.+||.++|.+-+..|.+.+|++
T Consensus 158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d-----~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED-----NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc-----hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 6778999999999999999999999999999974 3467788887778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 039312 216 PTACLAFSITLFLLGR 231 (579)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (579)
.++..++-..+-++..
T Consensus 232 L~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 232 LAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHHHHHHhee
Confidence 9887777655555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-12 Score=135.48 Aligned_cols=171 Identities=11% Similarity=0.129 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhc---ccChhHHHH-HHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDA---YLGRFRTLL-VGSIASLLGML 108 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr---~~Gr~~~l~-~~~~~~~~~~~ 108 (579)
+..+..++.+..+..++..|+++.+|+++..+|.++.+.-+.-++.-|+.|+++|| ++||||-.+ ++.+...++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 34555566666677889999999999999999999999999999999999999997 379887655 45566766666
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHH
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS 188 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 188 (579)
++...+ .. ........+++.-++..++..+....-.++.++..++ + ++|.+..++....
T Consensus 96 llf~~p---~~-------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~---~eRt~l~s~r~~~ 154 (460)
T PRK11462 96 LAYSTP---DL-------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--P---TQRISLQSWRFVL 154 (460)
T ss_pred HHHhCC---CC-------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--H---HHHHHHHHHHHHH
Confidence 655432 10 0112344566666677888888888888999998876 3 4467778877777
Q ss_pred HHHHHHHHHHHHhhhccc-------cchhHHHHHHHHHHHHHH
Q 039312 189 FTVALVVVLTGVVYIQTN-------VSWVLGFAIPTACLAFSI 224 (579)
Q Consensus 189 ~~ig~~i~~~~~~~l~~~-------~g~~~~f~i~~~~~~~~~ 224 (579)
.++|..+++.+...+... .+|.....+.++..+++.
T Consensus 155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 888877776664433221 246655555444433333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-14 Score=155.10 Aligned_cols=198 Identities=14% Similarity=0.193 Sum_probs=148.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++.+.+.+....+....+.+......+.+.++++++..+.|++.+.+.++..++.++.|+++|| +||||.+.++++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHH
Confidence 4555455554555555666777777788899999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhc-ccC---------------CCCCCC-----------CCCCCCCC--chhHHHHHHHHHHHHHhccCC
Q 039312 105 LGMLMMTLTAGIH-QLR---------------PSSCGD-----------PPHCPQPQ--GWQFCVLFAALTLLSIGAGGI 155 (579)
Q Consensus 105 ~~~~~~~~~~~~~-~~~---------------~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~l~g~g~g~~ 155 (579)
+|.+++++.+.+. .+. ...|.. ...|.... ...+..++++|+++|+|.+..
T Consensus 110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~ 189 (633)
T TIGR00805 110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI 189 (633)
T ss_pred HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence 9999988764211 010 111210 01122211 113567889999999999999
Q ss_pred ccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc----------------------chhHHH
Q 039312 156 RPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV----------------------SWVLGF 213 (579)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~----------------------g~~~~f 213 (579)
.+...+++.|.+|+ +.|+..+++++.+..+|.++|+++++++.+.+ +|+..|
T Consensus 190 ~~~~~~~i~d~~~~------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F 263 (633)
T TIGR00805 190 FPLGISYIDDFAKS------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF 263 (633)
T ss_pred hhcCchhhhccCCc------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence 99999999999985 34677889999999999999999998876432 278888
Q ss_pred HHHHHHHHHHHHHHHh
Q 039312 214 AIPTACLAFSITLFLL 229 (579)
Q Consensus 214 ~i~~~~~~~~~~~~~~ 229 (579)
++.+++.++..+.+++
T Consensus 264 li~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 264 LICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8877766554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-19 Score=189.26 Aligned_cols=152 Identities=12% Similarity=0.194 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHH
Q 039312 62 VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVL 141 (579)
Q Consensus 62 ~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (579)
.+.++..+...++..++.+++|+++|| +|||++++++.++..++.++..++.. ..++..+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~ 105 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS-------------------YNNFWML 105 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc-------------------ccccccc
Confidence 356888999999999999999999999 89999999999999999998888751 1246679
Q ss_pred HHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc---ccchhHHHHHHHH
Q 039312 142 FAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT---NVSWVLGFAIPTA 218 (579)
Q Consensus 142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~---~~g~~~~f~i~~~ 218 (579)
.++|++.|++.|+..+..+.++.|..|+ +.|+....+......+|..++..++..+.. ..+||..++++.+
T Consensus 106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 179 (451)
T PF00083_consen 106 LIGRFLIGFGIGGAYVVSPIYISEIAPP------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI 179 (451)
T ss_pred cccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999885 335556666666777888777766544432 2459999888776
Q ss_pred HHHHHHHHHH--hccceeeecCC
Q 039312 219 CLAFSITLFL--LGRRCYIYIKP 239 (579)
Q Consensus 219 ~~~~~~~~~~--~~~~~~~~~~~ 239 (579)
..++.++... ...|+|...+.
T Consensus 180 ~~l~~~~~~~~~pESP~wL~~~~ 202 (451)
T PF00083_consen 180 PSLLVLLLRFFLPESPRWLLSKG 202 (451)
T ss_pred ccccccccccccccccceecccc
Confidence 5544333322 22455554433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-11 Score=129.98 Aligned_cols=170 Identities=14% Similarity=0.026 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
|..+...+++..+. ...|+.. .....+++++|+|..+.+++.++.. ...++.+++|+++|| +|||++++++.+++.
T Consensus 27 w~~lva~~~~~~~~-g~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~ 102 (591)
T PTZ00207 27 FALLVLGAFCSICT-SFMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFC 102 (591)
T ss_pred HHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence 33333344444433 3334444 3445678999999999999887644 344567788999999 899999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
+++++++++.. ..+ ..+.+.+++.|++.|+|.+.+.+.....+.++|| +.|+.+.++
T Consensus 103 iG~ll~ala~~-~~i---------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-------~~RG~a~Gi 159 (591)
T PTZ00207 103 LGTLLFALTFQ-EVI---------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-------SNRGAVVAI 159 (591)
T ss_pred HHHHHHHHHhc-ccc---------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-------hhhHHHHHH
Confidence 99999998631 000 1267888999999999999988888889999998 346788999
Q ss_pred HHHHHHHHHHH-HHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVV-VLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 185 ~~~~~~ig~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
...+..+|+++ ++...+++.+ +|+..|++.++..++.
T Consensus 160 ~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 160 MKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 88899999975 5555555543 5776676665544433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=138.88 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=103.1
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhH
Q 039312 59 LGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQF 138 (579)
Q Consensus 59 ~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (579)
++....+.++.+..++..+++++-||++|+ +|||+++...+++.+++++.++++. |+++...-.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~m 144 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV---------------GTTSPLGVM 144 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC---------------CCCCCcchh
Confidence 667788999999999999999999999999 8999999999999999998666543 111111246
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----------cc
Q 039312 139 CVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT-----------NV 207 (579)
Q Consensus 139 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~-----------~~ 207 (579)
..+.+.|.++|+|.|+-+|...+..+|....+++. ...+..++...++.-.|++++-++.+.+.. ..
T Consensus 145 ~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG--a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~ 222 (538)
T KOG0252|consen 145 MTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG--AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDG 222 (538)
T ss_pred hHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc--ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHH
Confidence 77999999999999999999999888866642211 112333444445555666666555544321 12
Q ss_pred chhHHHHHHHHHH
Q 039312 208 SWVLGFAIPTACL 220 (579)
Q Consensus 208 g~~~~f~i~~~~~ 220 (579)
=||..|.+.++..
T Consensus 223 vWRl~~glg~vpa 235 (538)
T KOG0252|consen 223 VWRIIFGLGAVPA 235 (538)
T ss_pred HHHHHHHHHHHHH
Confidence 3998887765443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-11 Score=117.47 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTL 112 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~ 112 (579)
++.+=.|-..-++- .+..-+.+++|+|.+++|.+.+.=.++..+..+++.+++.| +|-.+.+..++++.++|..+=..
T Consensus 19 lia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~ 96 (395)
T COG2807 19 LIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSL 96 (395)
T ss_pred HHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhc
Confidence 33333455554443 34466788999999999999999999999999999999999 89999999999988888876554
Q ss_pred HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHH
Q 039312 113 TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVA 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 192 (579)
. +...++.+-.+.|.|.+......|.++.+-||+ +.+..++.|..+.++|
T Consensus 97 ~-----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~ 146 (395)
T COG2807 97 G-----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAG 146 (395)
T ss_pred c-----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHH
Confidence 3 234688888999999999999999999999993 3466788888899999
Q ss_pred HHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 039312 193 LVVVLTGVVYIQTNV-SWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 193 ~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+++++.+...+.++. ||+..+.+=+...+++++.++.
T Consensus 147 aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 147 AALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988887766 7998887766666666665543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-10 Score=121.71 Aligned_cols=360 Identities=12% Similarity=0.141 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc---cChhHHH-HHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY---LGRFRTL-LVGSIASLLGML 108 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~l-~~~~~~~~~~~~ 108 (579)
...+..++.+--+..++..|+++..|+++..+|.++.+.=+.-++.-|+.|.++||. +||+|-. +++.+-..+.+.
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 345555667777788999999999999999999999999999999999999999963 6877664 455566777777
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHH
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS 188 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 188 (579)
++..++++ ..+.+....++.-++.+++...+...-.++.++..++ + ++|.+..++....
T Consensus 99 l~F~~p~~----------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~---~ER~~l~s~R~~~ 157 (467)
T COG2211 99 LLFITPDF----------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--P---QERASLTSWRMVF 157 (467)
T ss_pred HHHcCCCc----------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--H---HHHHHHHHHHHHH
Confidence 77765411 0122455566777788999999988889999998776 4 4467788887778
Q ss_pred HHHHHHHHHHHHhhhc----c---ccchhHHHHHHHHHHHHHHHHHHhccce-eeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 189 FTVALVVVLTGVVYIQ----T---NVSWVLGFAIPTACLAFSITLFLLGRRC-YIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 189 ~~ig~~i~~~~~~~l~----~---~~g~~~~f~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
.++|..+...+.+.+. + ..||+..-.+.++..++.++..++..++ ..+..+.++.
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~----------------- 220 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG----------------- 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc-----------------
Confidence 8888666655544332 2 3466665555554444444433333222 1111111000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
...++.+.... .-..|. .+.++....+.+.
T Consensus 221 ----------------------~~~~~~~~~~~-------------------------~~~Nrp---~~~~l~~~l~~~~ 250 (467)
T COG2211 221 ----------------------VKLKLKDSFLL-------------------------IFKNRP---LLLLLLMNLLLFI 250 (467)
T ss_pred ----------------------ccccHHHHHHH-------------------------HHccch---HHHHHHHHHHHHH
Confidence 00000000000 000111 1111222233333
Q ss_pred hhhccchHHHHHh-hhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQA-IQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSIL 419 (579)
Q Consensus 341 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~ 419 (579)
.++...+..++.. ..++.. +..+...........++..++.-++ .+|+++ .+....|.++.++
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~-----~l~~~~~~~~~~~~~l~~~~~~p~L----~~~~gk-------k~~~~~~~~~~~i 314 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDP-----ELFAYLLLLASGAGLLIGLILWPRL----VKKFGK-------KKLFLIGLLLLAV 314 (467)
T ss_pred HHHHHhhhhheeEEEEcCCh-----HHHHHHHHHHHHHHHHHHHHhHHHH----HHHhch-------HHHHHHHHHHHHH
Confidence 3333333322221 112211 1222233333333334434554333 555433 3677778888877
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------hhhHHHHHHHHHHHH
Q 039312 420 CMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP-------ESMRTVAGAAFFLSL 492 (579)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~rg~~~gi~~~~~ 492 (579)
+.+...+.. ..+.+..++..++.+++.....+..|+.+.+... ++..|..-|++++..
T Consensus 315 ~~~~~~f~~---------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~ 379 (467)
T COG2211 315 GYLLLYFTP---------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379 (467)
T ss_pred HHHHHHhhc---------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence 776666553 1234455666688899999999999999886543 455677888888888
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 039312 493 SVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 493 ~ig~~l~~~l~~~v~~~~~ 511 (579)
=+|..++..+.+++....+
T Consensus 380 K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 380 KLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 8899998888888766554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=133.04 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
+++..+..+.........++....+++.|+++++|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHH
Confidence 34444444444444444555556788899999999999999998888778888899999999999 89999887776555
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.+....+.... +...+++.+++.+++.|...+...+...|.+|+ .++++.+
T Consensus 293 ~~~~~~~~~~~----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~g~~~~ 343 (393)
T PRK15011 293 VCFYAGMLMAH----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------QAGSATT 343 (393)
T ss_pred HHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CcchHHH
Confidence 54433333322 344556677777776666666666777787773 2456777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
.++...++|..++|.+++++.+..||+..|++..+..++++++.+.
T Consensus 344 ~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 344 LYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 7777889999999999999999889999998877776666555544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=132.88 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=126.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++.+...+...++..+.+|++..+++.|+++.+|++..+.+.......++..++.+++|+++|| +|||++++++.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~ 327 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3444444445556678889999999999998999999888888888888899999999999999 899999888776544
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+..... ..+...+++++++.+++.+...+...++..+.+|+ +.|+++++.
T Consensus 328 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~------~~Rg~~~g~ 382 (490)
T PRK10642 328 VLAIPAFILIN-------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT------HIRYSALAA 382 (490)
T ss_pred HHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------ccchHHHHH
Confidence 44333222110 01345567788888887776667777888899985 456778887
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNV-SWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 55456667788898888887654 4676665544444444444333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-12 Score=126.20 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-ChhHH-HHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-GRFRT-LLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~-l~~~~~~~ 103 (579)
|.+|++.+..++..+..|++.-+.|.|+.+..|+|..++++..+.|-.++..+.+++||+|||++ |||.. -++++++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999998 77754 34445555
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
+++.+...+++ ..++.+..+..+.+|+...+..-.+.....|..|+ +..+++-+
T Consensus 332 ~~~~~~~w~~~--------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK------~AaGtA~G 385 (448)
T COG2271 332 TASLVLYWLAP--------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK------KAAGTATG 385 (448)
T ss_pred HHHHHHHHcCC--------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH------hhccchhc
Confidence 55555555543 12567777888888888877776667777787774 22344455
Q ss_pred HHHHHHHH-HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 184 WWYFSFTV-ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 184 ~~~~~~~i-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
...+...+ |++.+....+++.+.+||...|++..+..+++.+++...
T Consensus 386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 54445556 888888889999898999999988776666665554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-09 Score=112.15 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
+.+.+.-++.|+..+...+..-++..+..|++.++...|++.+..-..+++||.+.+.+.+.++
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555688899999999999999999999999999999999999999999999999998875
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=130.96 Aligned_cols=176 Identities=14% Similarity=0.026 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.+|...+..++....++++..++|.|+++.+|++..++++......++..++.+++|+++|| +|||+.++....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH
Confidence 456777777777777888888999999999999999999999999999999999999999999 8999887665444443
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++.+.. ..+....++.+++.|++..+..........|.+|+ +.++++.+..
T Consensus 337 ~~~~~~~~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~------~~~g~a~gi~ 390 (467)
T PRK09556 337 IFTLGVYQH--------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK------KAIGVANGIK 390 (467)
T ss_pred HHHHHHHHh--------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch------hhHHHHHHHH
Confidence 332222211 01334455666667754433333333556688883 5578889998
Q ss_pred HHHHHH-HHHHHHHHHhhhcc------------ccchhHHHHHHHHHHHHHHHHHH
Q 039312 186 YFSFTV-ALVVVLTGVVYIQT------------NVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 186 ~~~~~i-g~~i~~~~~~~l~~------------~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+...++ |.+++|.+.|++.+ ..||+..|++..+..+++.+..+
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 888886 77999999999988 56899999887666666555444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-10 Score=108.95 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=107.7
Q ss_pred HHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 38 EKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIH 117 (579)
Q Consensus 38 ~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (579)
...........+.+-+....+.+..+..++......+..+++..+|.++|+ +|||+.+.+..+..++..++-..+.
T Consensus 89 ad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp--- 164 (528)
T KOG0253|consen 89 ADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP--- 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC---
Confidence 344444455566666677788999999999999999999999999999999 8999998877666666555555544
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039312 118 QLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL 197 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~ 197 (579)
++..+.+.|.+.|+|.|+ .|...++-.|..|..+ + ....-.. ..-.+|.++..
T Consensus 165 -------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~--r----~~~~V~~-~~waig~v~ea 217 (528)
T KOG0253|consen 165 -------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH--R----WLLTVMS-FFWAIGQVFEA 217 (528)
T ss_pred -------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC--C----CcchhHH-HHHHHHHHHHH
Confidence 667789999999999999 8888888889888522 1 1111111 22356666665
Q ss_pred HHHhhhccccchhHHHHHHHH
Q 039312 198 TGVVYIQTNVSWVLGFAIPTA 218 (579)
Q Consensus 198 ~~~~~l~~~~g~~~~f~i~~~ 218 (579)
.+.=....+.|||+-......
T Consensus 218 ~law~vm~~~gwr~~l~~~~~ 238 (528)
T KOG0253|consen 218 LLAWGVMSNFGWRYLLFTSST 238 (528)
T ss_pred HHHHHHHHhhhHHHHHHHHHh
Confidence 555445566799876655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=127.41 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++...+..++.....+++..+++.|+++.+|++..+++.+.+.+.++..++.+++|+++|| +|||+++..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 445555556666667778888999999999999999999999999999999999999999999 8999998877665555
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++.... +...+.+..++.|++.+...+...++..+..++. +++..++.
T Consensus 284 ~~~~~~~~~----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~ 334 (394)
T PRK03699 284 LMYLFVNTD----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFI 334 (394)
T ss_pred HHHHHHHcC----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHH
Confidence 444433322 2333455566788887777777777777766532 12345666
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSI 224 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 224 (579)
..+.++|..++|.+.+++.+..|++..|++.++..+++.
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 677889999999999999998899999887666555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-11 Score=123.51 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=124.3
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhh
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~ 115 (579)
++.....+....+++.|+.+++|.+..+.+.+.........++.+++|+++|| +|||+++.++.++..+.........
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~- 286 (375)
T TIGR00899 209 TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN- 286 (375)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH-
Confidence 33333344455677889888999999999998887777778888999999999 8999998887665555444433333
Q ss_pred hcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 039312 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i 195 (579)
+.+.+++.+++.|++.|...+....+..|..|+ +++++.+.++...++|..+
T Consensus 287 ---------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~ 338 (375)
T TIGR00899 287 ---------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-------RAGAATTLYTNTGRVGWII 338 (375)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHHH
Confidence 445566677788888888777777888887763 2347788888888999999
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 196 VLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 196 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+|.+.+++.+..||+..|++.++..+++.++..
T Consensus 339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999998888999999888877666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=122.52 Aligned_cols=178 Identities=12% Similarity=0.053 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+..+...+..++...+++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++|| +|||+.++++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Confidence 344555555666678888899999999976 89999999999999999999999999999999 8999999888777777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+.... . +...+ ...+.|++.+...|.......+.+++ ++.+++.++..
T Consensus 283 ~~~~~~~~~---~------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~-----~~~~g~~~g~~ 334 (393)
T PRK09705 283 GFCGFIWLP---L------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ-----PAIAGKLVAFM 334 (393)
T ss_pred HHHHHHHcc---c------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCC-----HHHHHHHHHHH
Confidence 665544322 0 11112 12356788888888777777777753 24567889998
Q ss_pred HHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhccce
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGRRC 233 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~ 233 (579)
+...+++..++|.+.+++.+..| |...|++.++..++.+.......++
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899999999999999998876 7888888776666555554444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=126.89 Aligned_cols=181 Identities=18% Similarity=0.087 Sum_probs=127.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++....++...++..+.+|.+..+++.|+++.+|++......+.........++.++.|+++|| +|||++++.+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~ 327 (438)
T PRK09952 249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGT 327 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHH
Confidence 3444444456677778889899999999999999998876666666677778888999999999 899999888776655
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+..... .......+++..++.+++.+...+...++++|.+|. +.|+++.++
T Consensus 328 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~------~~r~tg~g~ 383 (438)
T PRK09952 328 LSAFPFFMALE------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA------SYRYSGAGV 383 (438)
T ss_pred HHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc------chhHHHHhH
Confidence 54443333210 001233344455666788787788888999999995 346667777
Q ss_pred H-HHHHHHHHHHHHHHHhhhcccc--chhHHHHHHHHHHHHHHHHHHhc
Q 039312 185 W-YFSFTVALVVVLTGVVYIQTNV--SWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 185 ~-~~~~~ig~~i~~~~~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
. ..+..+|++++|.+.+++.+.. +|..++.+.++..+++.+..+..
T Consensus 384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 3 4445689999999999987633 48877777666666555544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=124.31 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=127.0
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhh
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~ 115 (579)
.+..++++.+..+++.|+.+ .|++ +.+.....+.++..++.++.|+++|| +|||+.+..+..+..++...+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34455666667788888754 5663 44566677788888999999999999 8999999888877777776666543
Q ss_pred hcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 039312 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i 195 (579)
+...+++++++.|++.+...+.......|.+|+ +.|++.++.++...++|..+
T Consensus 301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHH
Confidence 445567778889999988888777777787763 45788899988899999999
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 196 VLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 196 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
++.+.+++.+..||+..|++.++..+++++..+...+
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988889999999887776666655554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-12 Score=119.82 Aligned_cols=356 Identities=11% Similarity=0.096 Sum_probs=203.6
Q ss_pred HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 039312 48 NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDP 127 (579)
Q Consensus 48 ~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (579)
-+-.++..+...+.++..++.+.++.-..+.++++|++-||.+|-|..-++-+.+.++|.+.++.-.
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg------------- 131 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG------------- 131 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-------------
Confidence 3445666667777778889999999999999999999999999988777777778888888776533
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039312 128 PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV 207 (579)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~ 207 (579)
..+.++...++|+++|+|.-....+...++..+|..+ +..-.+++......+|..+-..+.+++.+..
T Consensus 132 ------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 132 ------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred ------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 1236888999999999998888888889999999863 3556688776677888877777777765543
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccch
Q 039312 208 SWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKC 287 (579)
Q Consensus 208 g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (579)
+--.+ ...-..+++.+.+-. +..+ ..+..... ....+++. |..++
T Consensus 200 ~~~~~---~~ghT~LG~~l~~~~--~tc~-----~slical~---lg~~D~rA------erilh---------------- 244 (459)
T KOG4686|consen 200 GRMFP---GVGHTLLGLWLCFEV--KTCK-----QSLICALS---LGLSDDRA------ERILH---------------- 244 (459)
T ss_pred HHhcc---cchHHHHHHHHHHHH--HHHH-----HHHHHHHH---hhhhhhHH------HHHHh----------------
Confidence 31100 000001111000000 0000 00000000 00000000 00000
Q ss_pred hhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHH-hhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCcccc
Q 039312 288 LDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLI-AILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKM 366 (579)
Q Consensus 288 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 366 (579)
+ |..+.|.. .+.++++.+. ....+.+.+++|+.....+.+.. ..-...+.|- ...
T Consensus 245 --~---------e~g~~Ge~---------pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg---~~fF~~rfGl-S~~ 300 (459)
T KOG4686|consen 245 --L---------EEGFLGEE---------PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLG---PMFFQKRFGL-SAV 300 (459)
T ss_pred --h---------hcCcccCC---------cccccccccCccHHHHHHHHHHHHHHHHHHhhhh---HHHHHHhhCC-Chh
Confidence 0 00000100 0111222211 11222233333433333222211 1111122220 001
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 039312 367 PPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMS 446 (579)
Q Consensus 367 ~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 446 (579)
.++.+...--....+..|+.+.++|.+.++. +.+..+.+...++-..+.+.. .+
T Consensus 301 ~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~----------------ls 354 (459)
T KOG4686|consen 301 SAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF----------------LS 354 (459)
T ss_pred hccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh----------------cc
Confidence 2223333333344566788888766554432 556666666666655555443 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcChH
Q 039312 447 LLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL 519 (579)
Q Consensus 447 ~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~w~ 519 (579)
+| ..+.++|++..+..-..|..+....|++.-|++-|.....+++|-.+.+++.+++.+.. ++..|.
T Consensus 355 Py---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g~y~~l 421 (459)
T KOG4686|consen 355 PY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---GSYDNL 421 (459)
T ss_pred HH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---CchhhH
Confidence 33 35678888888887788999999999999999999999999999999999999887653 333555
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=111.92 Aligned_cols=136 Identities=12% Similarity=0.077 Sum_probs=100.1
Q ss_pred HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 039312 48 NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDP 127 (579)
Q Consensus 48 ~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (579)
.+..|..+.+| +...+-|...+|...+....+.+-|+.|+ +|-|.+++++.++.++|..+=..+. .|.+.+
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~------ 136 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISS-LPFVPP------ 136 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhcc-Cccccc------
Confidence 34456666777 77788999999999999999999999999 8999999999999999998877665 332211
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 128 PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
.......+.+-.+.+.+.-.+....+-..+-+|++ .+|+.+...-.++..+|.+++.++.+.+..
T Consensus 137 -------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~------~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 137 -------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP------DQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred -------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc------chhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 01112567777777777777777767777888985 335566665555666777777776665543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=130.77 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHH
Q 039312 66 NIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAAL 145 (579)
Q Consensus 66 ~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (579)
....+..++..++.+++|+++|| +|||++++++.++..++.+++.+.. +...+++.+
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~~ 655 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIALL 655 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHH
Confidence 33455667889999999999999 8999999999888888887777654 334466667
Q ss_pred HHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 039312 146 TLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 146 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 225 (579)
++.+++.++..+...++++|++|+ ..|++++++.+...++|++++|.+++.+... +...+|++.++..+++.+
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPS------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 778888888888889999999994 5689999999999999999999999887653 456778777766665555
Q ss_pred HHHh
Q 039312 226 LFLL 229 (579)
Q Consensus 226 ~~~~ 229 (579)
+..+
T Consensus 729 l~~~ 732 (742)
T TIGR01299 729 LALK 732 (742)
T ss_pred HHHh
Confidence 4443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=123.53 Aligned_cols=168 Identities=20% Similarity=0.134 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
.+......++..........+.+.|. +++|.+..+.+.+.+.+.++..++.+++|+++|| +|||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHH
Confidence 34444444444455544555566664 5689999999999999999999999999999999 899999998888888877
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
+++.+..+ .+...++...++.+++.|...+..++++.|.+|+ +.|++.+++++.
T Consensus 285 ~~~~~~~~--------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~g~~~~ 338 (377)
T TIGR00890 285 AAMLFIPM--------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP------ANSAANYGFLYT 338 (377)
T ss_pred HHHHHccc--------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh------hhhhhHhHHHHH
Confidence 66655430 0222344556778888888888888889999884 446788999888
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
..++|..++|.+.+++.+..||+..|++.++..+++
T Consensus 339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999998899999998877655544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=118.62 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhH-HHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFR-TLLVGSIASLLG 106 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-~l~~~~~~~~~~ 106 (579)
++...+..++..........+.+.|+.+.+|.+..+.+.+......+..++.++.|+++|| +|||+ .+.++..+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence 3444455566667777777888888888889999999999999999999999999999999 89999 999998888888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.+.+.... +....++..++.|++.+...+...+++.|..|+ +.|++.++.++
T Consensus 256 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 307 (352)
T cd06174 256 LLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP------EARGTASGLFN 307 (352)
T ss_pred HHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH------HHHHHHHHHHH
Confidence 88777654 456678888999999999999999999999884 45788899999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
...++|..+++.+.+++.+..+|+..|++.++..+++.+..
T Consensus 308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999988899999998887766665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=124.56 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++......++....++.+..+++.|+++.+|.+..+.+.+.....++..++.+++|+++|| +|||+.++.+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence 346666677777788888888999999988999999999999999999999999999999999 8999988765554443
Q ss_pred HHH-HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 106 GML-MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
... ...... + ..+...++....+.+++.+...+...+++.|.+|+ +.|+++++.
T Consensus 298 ~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~ 352 (394)
T TIGR00883 298 LAVPLLMALL--D-----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT------EVRYTGASL 352 (394)
T ss_pred HHHHHHHHHh--c-----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc------cceeeEeee
Confidence 332 222111 0 01344556667778888888888999999999995 234555665
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHH
Q 039312 185 -WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTAC 219 (579)
Q Consensus 185 -~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~ 219 (579)
+..+..+|..++|.+++++.+..| |+..++..++.
T Consensus 353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 344567888899999999988877 88776655543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=121.99 Aligned_cols=175 Identities=9% Similarity=0.012 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCc--------hhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLG--------GVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
..++..++..........+.+.|+.+ .|.+ ..+.+...+...+...++.++.|+++|| +|||+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 34444444444444455677777754 4544 3567888898899999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..++..++..... +..+...+++..++.|++.+...+....++.|.+|+ +.|+++
T Consensus 290 ~~~v~~~l~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~------~~~g~~ 345 (418)
T TIGR00889 290 AWALRFGFFAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV------HIRASA 345 (418)
T ss_pred HHHHHHHHHHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHH
Confidence 88777666655320 011345567788889999998888888999999993 557888
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhhccc------cchhHHHHHHHHHHHHHHHHHHhc
Q 039312 182 FNWWY-FSFTVALVVVLTGVVYIQTN------VSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 182 ~~~~~-~~~~ig~~i~~~~~~~l~~~------~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+++.+ ....+|.++||.++|++.+. +||+..|++.++..+++.+++++.
T Consensus 346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 56789999999999998876 469999988777655554444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-10 Score=117.37 Aligned_cols=173 Identities=11% Similarity=-0.040 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
++...+..++.....++...++++|+.+.+|++..+++.+.+.+.++..++.++.|+++|| +|||+.+ .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHH
Confidence 3444444555556666667788889888899999999999999999999999999999999 7987654 4444443433
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
..+.... .+...+.+..++.|++.+...+...+.+.+..|+ .++++++++..
T Consensus 285 ~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~ 336 (390)
T PRK03545 285 LLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSG 336 (390)
T ss_pred HHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHH
Confidence 3322211 1345566677788888887777777777776552 34567888777
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
..++|..+||.++|++.+++|++..|++.+...+++++.....
T Consensus 337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998888777766655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=119.44 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=125.9
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhh
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~ 115 (579)
++.......+..+.+.|+.+ .|++. .+.....+..+..++.++.|++.|| +||||.+..+..+..++.+++.+..
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~- 300 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP- 300 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-
Confidence 33445556666777778754 56653 4556666777788899999999999 8999999988888877776655543
Q ss_pred hcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 039312 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i 195 (579)
+...++++.++.|++.+...+...+...+.+++ +.|++.+++++...++|..+
T Consensus 301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS------QVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHH
Confidence 344566778888999888888877888888773 45788899999899999999
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 196 VLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 196 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+|.+.+++.++.||+..|++.+...++++++.+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999899999999888776666555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-10 Score=118.61 Aligned_cols=165 Identities=14% Similarity=0.061 Sum_probs=122.1
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchh---HHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGV---LLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTL 112 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~ 112 (579)
++.......+..+++.|+.+..+.... ..+.+..+..++..++.++.|+++|| +|||+++.++.++..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence 333444445556777777664433221 24555566667778888999999999 89999999888777666665554
Q ss_pred HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHH
Q 039312 113 TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVA 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 192 (579)
.. +.+.+++.+++.|++.+...|...+++.+..++ +.+++.++.++...++|
T Consensus 308 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~g 359 (408)
T PRK09874 308 VQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN------QIAGRIFSYNQSFRDIG 359 (408)
T ss_pred hc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc------ccceeeehHHHHHHHHH
Confidence 33 345677788889999999988888887776663 34567788888888999
Q ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 193 LVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 193 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
..+||.+++++.+..||+..|++.+++.+++.+..+.
T Consensus 360 ~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 360 NVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899999999888776766555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-10 Score=119.39 Aligned_cols=159 Identities=10% Similarity=0.049 Sum_probs=125.6
Q ss_pred HHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 039312 42 SMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRP 121 (579)
Q Consensus 42 ~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (579)
.+++..+++.|+.+.+|++..+.+++.+...++..++.++.|+++|| .++++.+..+.++..++.+++.+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence 35566788889888899999999999999999999999999999999 7888888888777777766555433
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039312 122 SSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV 201 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~ 201 (579)
+.....++.++.|++.+...+...+++.+..|+ +.|++.+++++...++|..++|.+.|
T Consensus 311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~g~~l~G 369 (417)
T PRK10489 311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD------EMLGRINGLWTAQNVTGDAIGAALLG 369 (417)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 344566677778888887777777888888883 45788899988889999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 202 YIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 202 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
++.+.+|++..+++.++..++..++...
T Consensus 370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 370 GLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 9999889888887666554443333333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-10 Score=120.99 Aligned_cols=176 Identities=13% Similarity=0.032 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc--ChhHHHH-HHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL--GRFRTLL-VGSIA 102 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr~~~l~-~~~~~ 102 (579)
+.+|...+..++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++|| + |||+... ....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence 446666677777777788888999999999999999999999888889999999999999999 7 5554332 22223
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++...+.+.. ..+.....++.++.|.+.........++..|.+|+ +.++++.
T Consensus 332 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~ 385 (452)
T PRK11273 332 VTIATIVYWLNP--------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 385 (452)
T ss_pred HHHHHHHHHHhc--------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh------hhhhhHH
Confidence 333333222211 00222233344444444333222334456687874 4567888
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 183 NWWYFSFTVALVV-VLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 183 ~~~~~~~~ig~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
++++...++|+.+ +|.+.+++.+..||+..|++.++..+++++...
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8888778888665 799999999989999999887776666655444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=115.67 Aligned_cols=184 Identities=14% Similarity=0.037 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
-+..|.+.+.++..-.++.++..+++.|++++++.++.+++.....+...+.+..+++|+|||| +|.+|++++.....+
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 4678888888888888888999999999999999999999999999999999999999999999 899999888777777
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++...+.+.. +.. ....+...+++..+.+++..|.-+..+..++...|++ +.+...++
T Consensus 296 ~~~~~l~~~~--~~~-------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-------~~G~v~G~ 353 (417)
T COG2223 296 LAAALLSLFL--TGF-------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-------ETGAVTGI 353 (417)
T ss_pred HHHHHHHccc--ccc-------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-------hhhHHHHH
Confidence 7776666543 100 0012445555556666777777777778888888873 34566777
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhcc
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGR 231 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~ 231 (579)
.....++|+..-|...+...+..| +...|++.....+++....+...
T Consensus 354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889998888888888877776 88888887777666666554443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-11 Score=103.90 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 039312 69 TIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLL 148 (579)
Q Consensus 69 ~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (579)
+.+..+..++.++.|+++|| +|||+.+..+..+..++.+.+.... +.+.+.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 61 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQ 61 (141)
T ss_pred EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHH
Confidence 34567788889999999999 8999999998888888877766654 556678889999
Q ss_pred HHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 149 SIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 149 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
|++.+...+...+++.|.+|+ +.|++..+..+...++|..+++.+.+++.+..+|+..|++.....+++.+...
T Consensus 62 g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 62 GFGAAFALVAGAALIADIYPP------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHhHHHHHHHHCCh------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999984 34677888888899999999999999998888999998887766555544443
Q ss_pred h
Q 039312 229 L 229 (579)
Q Consensus 229 ~ 229 (579)
.
T Consensus 136 ~ 136 (141)
T TIGR00880 136 F 136 (141)
T ss_pred h
Confidence 3
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=115.71 Aligned_cols=177 Identities=13% Similarity=0.047 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHH-HHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLL-VGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~-~~~~~~~ 104 (579)
|.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++|| +|||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH
Confidence 34566666777788888888899998875 589999999999999999999999999999999 89988764 2333333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++...+...... ...+....++..++.|++.+...+. .+...+..| +.|++++++
T Consensus 300 ~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-------~~~g~~~g~ 354 (402)
T TIGR00897 300 IFTLALYYIPQH-----------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-------KHKGAAMSV 354 (402)
T ss_pred HHHHHHHHHHHc-----------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-------chhHHHHHH
Confidence 333333222100 0113445566677778877776543 445555433 236888999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
++.+.++|..++|.+.+++.+..||...|++.++..+++.++..+
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999889999998887766665544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-10 Score=115.34 Aligned_cols=179 Identities=12% Similarity=-0.018 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHH-HHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRT-LLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~-l~~~~~~~~ 104 (579)
+.++...+..++.....+.+..+.+.|+.+.+|.+..+.+.+.+...++..++.+++|+++|| +|||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence 456666677777788888888999999999999999999999999999999999999999999 899862 111111111
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+...+...... ........... .+.+.+..+..+...++..|.+|+ +.|++.+++
T Consensus 294 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~ 351 (399)
T TIGR00893 294 IAGLVLSLLMFATN---------------YVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPG------NIAGLTGGL 351 (399)
T ss_pred HHHHHHHHHHHHhc---------------cchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcCh------hHHHHHHHH
Confidence 22111111100000 00022223333 333333333788889999999984 456788999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~ 227 (579)
.+...++|..++|.+.+++.+..| |+..|++.++..+++.+..
T Consensus 352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999888 9988888776666554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-10 Score=116.88 Aligned_cols=166 Identities=12% Similarity=-0.057 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTL 112 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~ 112 (579)
...++.....+.+..+++.|+.+ .|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+.++.+...++...+..
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455666677788888764 79999999999999999999999999999999 89999988766655555544443
Q ss_pred HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHH
Q 039312 113 TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVA 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 192 (579)
.. +...+.+..++.|++.++..+...++..|.+|+ +.|++..++.+....+|
T Consensus 305 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g 356 (406)
T PRK11551 305 AP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT------QVRGTGVGAAVAVGRLG 356 (406)
T ss_pred cC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch------hhhhhhhhHHHHhhhHH
Confidence 32 333455566677887777788888899999984 44678899988889999
Q ss_pred HHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHH
Q 039312 193 LVVVLTGVVYIQTNV-SWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 193 ~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~ 228 (579)
..++|.+.+++.+.. +|...+++.+...+++....+
T Consensus 357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987754 455555555544444444333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-10 Score=117.87 Aligned_cols=176 Identities=13% Similarity=0.028 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc--Ch-hHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL--GR-FRTLLVGSIAS 103 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr-~~~l~~~~~~~ 103 (579)
.++...+..++....++++..+++.|+.+.+|++..+++...+.+.++..++.+++|+++|| + ++ +.......+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGI 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHH
Confidence 35555555666666777788899999988899999999999999999999999999999999 6 22 33222221111
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.+....+.... . . +.....+..+.+|++..+.........+|.+++ +.+++..+
T Consensus 323 ~~~~~~~~~~~---~----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 376 (434)
T PRK11663 323 LLSVGSLWLMP---F----------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK------EAAGAATG 376 (434)
T ss_pred HHHHHHHHHcc---c----------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH------hhHHhHHH
Confidence 22221111111 0 0 122222333334443322222234455777763 45788999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+.+...++|.+++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999899999998877766655444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-08 Score=98.74 Aligned_cols=346 Identities=13% Similarity=0.053 Sum_probs=195.2
Q ss_pred hHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccC-----hhHH-HHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 53 LQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLG-----RFRT-LLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 53 ~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
+..+++++..-.+..++.-.+. ....+..|+.||+ .+ ||.- +..|.++...+..+...+.-.-. . .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~-~--- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E-S--- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c-c---
Confidence 3457888887777777665554 4468899999999 46 5544 44556666666666555431110 0 0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTN 206 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~ 206 (579)
......+.........++..+.|+|.+...++..++++|..++ ++|.+..++.+.+.-+|.+++..+.+.+.+.
T Consensus 78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH------hhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 0000001112233455566678888888888999999999885 4577889998889999999999999888776
Q ss_pred cch-hHHHHHH---HHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccC
Q 039312 207 VSW-VLGFAIP---TACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRT 282 (579)
Q Consensus 207 ~g~-~~~f~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (579)
++. |..=.+. .+...+.++..+-..++..+..+. +++
T Consensus 152 ~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~----------------------~~~----------------- 192 (403)
T PF03209_consen 152 FSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA----------------------AER----------------- 192 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC----------------------CCC-----------------
Confidence 653 2211222 222222222222111111111000 000
Q ss_pred cccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCC
Q 039312 283 NRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGP 362 (579)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 362 (579)
++..+.+...... ...+.++++..+ ++.+.. +..|..-++.-.+.
T Consensus 193 ~~~~f~~a~~~~~----------------------~~~~a~~f~~fl--~l~t~a-----------~~~QD~iLEPygg~ 237 (403)
T PF03209_consen 193 PRPPFREAWRQVW----------------------ASPQARRFFVFL--FLGTLA-----------FFMQDVILEPYGGE 237 (403)
T ss_pred CCccHHHHHHHHH----------------------hCCChhHHHHHH--HHHHHH-----------HHhhHHHcCCchhH
Confidence 0001111000000 000112221111 111111 11222223332222
Q ss_pred ccccChh---hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039312 363 HFKMPPA---WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHD 439 (579)
Q Consensus 363 ~~~~~~~---~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~ 439 (579)
.++.+++ .++.+-..+.++...+..++.. +| ..+.+....|+...++++........
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~---------- 297 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP---------- 297 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 2334443 3444444555555555555422 22 12334455677777777666554431
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 440 SFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 440 ~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
.-+.+.+.+..+++|++.++......+...+.++++..|+.+|.|...++++..++..+.+.+.|..
T Consensus 298 ----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 298 ----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred ----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1145677888999999999999999999999999999999999999999999999988888877654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=121.17 Aligned_cols=160 Identities=8% Similarity=0.043 Sum_probs=121.6
Q ss_pred HHHHHhHHHHHHHhHHhc---CCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhh
Q 039312 40 LASMSLISNITVYLQNNY---NLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGI 116 (579)
Q Consensus 40 ~~~~~~~~~~~~y~~~~l---~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~ 116 (579)
..+......++.|+.+.+ +.+..+.+.+.+...++..++.+++|+++|| +|||+.+.++.++..++..++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~-- 313 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT-- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc--
Confidence 333334445677766543 5666788899999889999999999999999 8999999988888888777776654
Q ss_pred cccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH-HHHHHHHHHHH
Q 039312 117 HQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW-WYFSFTVALVV 195 (579)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~i 195 (579)
+.+.+++.+++.+++.+...+....++.+.+|+ +.+++.++. ++.+.++|.++
T Consensus 314 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~~lg~~i 367 (420)
T PRK09528 314 --------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV------RLSATIYLVGFQFAKQLGAVF 367 (420)
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc------cceeeeeeehHHHHHHHHHHH
Confidence 455677788888888887777777888888874 223445444 55677899999
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 196 VLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 196 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
++.+.|++.+..||+.+|.+.++..++..++.+
T Consensus 368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999989999999987766554444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=113.53 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=116.3
Q ss_pred HHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 039312 40 LASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQL 119 (579)
Q Consensus 40 ~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (579)
+.+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++|| +|||+++..+..+..++..... ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~----- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ----- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence 3444455677888764 69999999999999999999999999999999 8999999888777766654432 11
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039312 120 RPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199 (579)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~ 199 (579)
......+.+.|++.+...|...+.+.|..|+ +.+.+..+.++...++|.+++|.+
T Consensus 286 -------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~lG~~igp~~ 340 (381)
T PRK03633 286 -------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEH------HELVAMNQALLLSYTVGSLLGPSF 340 (381)
T ss_pred -------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133455667777777788888888887763 223445666666789999999999
Q ss_pred HhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 200 VVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 200 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+|++.+++||++.|++.+...+++.+..
T Consensus 341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 341 TAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=113.47 Aligned_cols=170 Identities=11% Similarity=0.023 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++..++..++...+.+....+.++|+++ +|.+..+.+.+.+...++..+..++.|++.|| +|+|+++.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence 455666666777777788888899999864 89999999999998888899999999999999 8999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
...++.++. +.+.+++..++.|+..|...+....++.+. |+ +.++++.+.+
T Consensus 283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~------~~~~~~q~~~ 333 (382)
T TIGR00902 283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG------SEIAKLQALY 333 (382)
T ss_pred HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH------hhHHHHHHHH
Confidence 888877765 566788889999999999999999888876 63 2345666765
Q ss_pred H-HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 186 Y-FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 186 ~-~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+ .+..+|.++++.++|++.+++|+ ..|++.++..++++++.
T Consensus 334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 4 46689999999999999998886 56666666555554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-10 Score=120.05 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=111.7
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (579)
.+..+++.|+++.+|++..+++.+.+...++..++.+++|+++|| +|||++++++.++..++.+++....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 456788999988999999999999999999999999999999999 8999998887665555544333221
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039312 124 CGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l 203 (579)
..+.+.+.+..++.+....+..+..++++.|.+|+ +.|++.+++++...++|..++|.+.+++
T Consensus 363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~g~~lgp~l~g~l 425 (496)
T PRK03893 363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT------EQRAAGLGFTYNVGALGGALAPILGALI 425 (496)
T ss_pred -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH------HHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 11233333334444433334456677888888884 4578889998888899999999999999
Q ss_pred ccccchhHHHHHHHH
Q 039312 204 QTNVSWVLGFAIPTA 218 (579)
Q Consensus 204 ~~~~g~~~~f~i~~~ 218 (579)
.+.+||+..+.+.+.
T Consensus 426 ~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 426 AQRLDLGTALASLSF 440 (496)
T ss_pred hccCChHHHHHHHHH
Confidence 999999877755443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=115.48 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=134.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHH-hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccCh-
Q 039312 15 QDPSAKKPGGWRAIKYILGNETFEKLASMSLISNITVYLQN-NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGR- 92 (579)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr- 92 (579)
+++.+..+.+||.+++..+..++....++.+...+-+|+++ +.+-+..-.|+++++..++..+..+.-|+.+.| -|+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCc
Confidence 34444556789999999999999888888777888888764 367778888999999999999999999999999 675
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCCh
Q 039312 93 FRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE 172 (579)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 172 (579)
|+-++.|.++.++|.++.......|. . ..+.++++|++.|+|.|.. +..-+++++....
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~~~----------------~-~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~--- 160 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYVPN----------------G-VKYLMLVARILTGVGVGNF-AVLRAYIADASTV--- 160 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccc----------------c-hHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc---
Confidence 77788899999999988844332332 1 4577899999999998875 4447777775553
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc----cc---------cchhHHHHHHHHHHHHHHHHHHhc
Q 039312 173 KGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ----TN---------VSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 173 ~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~----~~---------~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+.|.++++....+..+|..+||.+...+. +. .-+..+-++.+++.++..+...+.
T Consensus 161 ---~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 161 ---EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred ---cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 23455566655555666666666543331 11 113455566666655554444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-08 Score=98.95 Aligned_cols=107 Identities=10% Similarity=0.015 Sum_probs=75.9
Q ss_pred hHHHHHHHhHHhcCC---ch----hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHH-HHHHHHHHHHHHHHHHhhh
Q 039312 45 LISNITVYLQNNYNL---GG----VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLL-VGSIASLLGMLMMTLTAGI 116 (579)
Q Consensus 45 ~~~~~~~y~~~~l~~---s~----~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~-~~~~~~~~~~~~~~~~~~~ 116 (579)
+..++++|+++..+- +. +..+...++..+..++..|+.|.++|. .|+||-.+ +..++..+....++++.
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~-- 110 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIP-- 110 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhC--
Confidence 445788888887665 22 345667777788888899999999999 78665544 44555555666666654
Q ss_pred cccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCC
Q 039312 117 HQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTT 171 (579)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 171 (579)
+...++...+..++..++..+......+++.|..++++
T Consensus 111 -----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~ 148 (438)
T COG2270 111 -----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN 148 (438)
T ss_pred -----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence 11245566667777888888888888999999887544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.2e-10 Score=117.93 Aligned_cols=170 Identities=12% Similarity=-0.044 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHh
Q 039312 35 ETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTA 114 (579)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~ 114 (579)
.++....+|++..+++.|+.+.+|++..+.+...+....+..++.++.|+++|| +|||++++++.++..+.........
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334467788899999999999999999999988888888888888999999999 8999988776554433332222111
Q ss_pred hhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHH-HHH
Q 039312 115 GIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT-VAL 193 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-ig~ 193 (579)
+. ..+....+....+..++.+...+...++.+|.||+ +.|++++++.+...+ +++
T Consensus 331 --~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~------~~r~t~~g~~~~~g~~~~g 386 (432)
T PRK10406 331 --QN----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA------QVRALGVGLSYAVANALFG 386 (432)
T ss_pred --Hc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CccchhhhHHHHHHHHHHH
Confidence 00 00111111111222223333334566778999995 457888888665544 334
Q ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 039312 194 VVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 194 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
..+|.+.+++.....|...+++.++..+++++..++
T Consensus 387 ~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 387 GSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 457777776643323555666555555555444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=110.41 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=139.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.++++..+...++...+.|...+|+.+|+++..|++..+.+++...|.++..++..++|+++|| +.|+++.....+..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3577888888889889999999999999999999999999999999999999999999999999 88888888777777
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
+....+.+..+ +.....+..++.|++.+........-.++..| +.+..+.++
T Consensus 288 ~~~l~l~~~~~---------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-------~~~~~a~sl 339 (394)
T COG2814 288 LALLALTFTGA---------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP-------DAADLAGSL 339 (394)
T ss_pred HHHHHHHHhcc---------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-------CchHHHHHH
Confidence 76666655441 33445555555666665554444444444333 234566777
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
+..+.|+|.++|..++|.+.+++|+....+++++..++++.+.+...+
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999999888877776655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=117.12 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHH-HH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGML-MM 110 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~-~~ 110 (579)
+...++....++++..+.+.|+++.+|++..+.++......++..++.+++|+++|| +|||++++.+.++..+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Confidence 344445566778888999999998899999999988888889999999999999999 8999988776544332221 11
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH-
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF- 189 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~- 189 (579)
.... + ..+........++.+++.+...+...++..|.+|+ +.|++++++.+...
T Consensus 323 ~~~~--~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~------~~rg~~~g~~~~~~~ 377 (434)
T PRK15075 323 SWLV--A-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA------EVRTAGFSLAYSLAT 377 (434)
T ss_pred HHHH--c-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC------CccchheeHHHHHHH
Confidence 1111 0 00222233334445566666666667888999985 34567777743333
Q ss_pred HHHHHHHHHHHhhhccccch
Q 039312 190 TVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~ 209 (579)
.+++.++|.+.+++.+..|+
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCC
Confidence 34577899999999887775
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-10 Score=115.83 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 039312 32 LGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMT 111 (579)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~ 111 (579)
.....+.....+++..+++.|+.+++|++..+.+.+.+...++..++.++.|+++|| +|||+.+.++.++..+......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~ 322 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVF 322 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHH
Confidence 333344455555667788999999999999999999999999999999999999999 8999998887665433222222
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q 039312 112 LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTV 191 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 191 (579)
... .+.+.+.++.++.+++.++..+..++++.|.+|+ +.|++.++..+...++
T Consensus 323 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 323 AIG---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT------DQRAAGLGFTYQLGNL 375 (405)
T ss_pred HhC---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc------chhHHHhhHHHHHHHH
Confidence 111 0334455555667777777778888899998884 4467889998888999
Q ss_pred HHHHHHHHHhhhccccc-hhHHHHH
Q 039312 192 ALVVVLTGVVYIQTNVS-WVLGFAI 215 (579)
Q Consensus 192 g~~i~~~~~~~l~~~~g-~~~~f~i 215 (579)
|..++|.+.|++.+..| |+..|..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999888 7766544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=114.74 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh--HHHHHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF--RTLLVGSIA 102 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~--~~l~~~~~~ 102 (579)
.|.+..-++..++.+-+...+..+...|.++++|++..+...+.....+.+.++.++.|++.|| +|.| +++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHH
Confidence 3566666777788888888999999999999999999999999999999999999999999999 8999 888888776
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
+.+..+.-.+-. .+.. ....+.+.+++.-++.|+..|+.++..-++.++..|+ ++.+.+|
T Consensus 359 ~~~i~~~g~~G~-~~~~-------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~------g~e~efF 418 (477)
T PF11700_consen 359 WIIIPLYGLFGF-WPSF-------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP------GREAEFF 418 (477)
T ss_pred HHHHHHHHHHHh-hhcc-------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC------chhhHHH
Confidence 644333322210 0100 0112455677777889999999999999999999996 3347789
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+++.+.....+.+||++.+.+.+..| .|.+++...++.+++++++...
T Consensus 419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988776 8888887777777776666443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=117.84 Aligned_cols=171 Identities=9% Similarity=0.033 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc-cChhHHHHHHH--HH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY-LGRFRTLLVGS--IA 102 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Gr~~~l~~~~--~~ 102 (579)
+.++..+...++..++++....+++.|+. ++|++..+++.+.+...++..++.+++|+++||. +++++..+++. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 34555556666677777888888999986 4799999999999999999999999999999973 23344343332 22
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..++.+++.... +.+.+++.+++.|++.+...++..+++.|.+|+ +.+++.+
T Consensus 320 ~~l~~ll~~~~~----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~------~~~g~~~ 371 (455)
T TIGR00892 320 NGLTHLLCALAG----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA------QRFSSAV 371 (455)
T ss_pred HHHHHHHHHHhc----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH------HHHhhHH
Confidence 233333333332 456677888899999999999989999998884 4567889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHH
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNV-SWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~ 225 (579)
++++...++|.+++|.++|++.+.. +|+..|++.++..+++.+
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999998876 599999888776655544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=111.62 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++.++....+....+.+.......-+.+.++++..+.|++.+.+-++..+..++..+++-| .=|-|.+-+|+++..+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHH
Confidence 455555555555555555888888889999999999999999999999999999999999999 5666888899999999
Q ss_pred HHHHHHHHhhhcc-c-----------CCC--------------CCC-CCCCCC--CCCch-hHHHHHHHHHHHHHhccCC
Q 039312 106 GMLMMTLTAGIHQ-L-----------RPS--------------SCG-DPPHCP--QPQGW-QFCVLFAALTLLSIGAGGI 155 (579)
Q Consensus 106 ~~~~~~~~~~~~~-~-----------~~~--------------~~~-~~~~~~--~~~~~-~~~~~~~~~~l~g~g~g~~ 155 (579)
|.+++.+-+.+.. + ..| .|. +.+.|. ..++. -+.+++++.++.|+|...+
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9998876532111 0 001 110 122232 12222 3447888999999999999
Q ss_pred ccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc------------------ccc-hhHHHHHH
Q 039312 156 RPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT------------------NVS-WVLGFAIP 216 (579)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~------------------~~g-~~~~f~i~ 216 (579)
.+...+++=|-..++ .-...+++.+.+..+|.++|.+++++... +.| |+..|+++
T Consensus 255 ~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 999988887765532 23456788888889999999999887531 123 88999999
Q ss_pred HHHHHHHHHHHHhccce
Q 039312 217 TACLAFSITLFLLGRRC 233 (579)
Q Consensus 217 ~~~~~~~~~~~~~~~~~ 233 (579)
+.+.++..+.++++.++
T Consensus 329 g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKE 345 (735)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 88877776666655444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-08 Score=103.75 Aligned_cols=358 Identities=15% Similarity=0.073 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHhH---HHHHHHhHHhcCCchhHH-HHHHH----HHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 31 ILGNETFEKLASMSLI---SNITVYLQNNYNLGGVLL-VNIVT----IWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~---~~~~~y~~~~l~~s~~~~-~~i~~----~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+....+...++.+... .+...+.....+.+..+. +.... ...+...+..++.|.++|| +|||..+.+..+.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHH
Confidence 3344444444444333 556666555554433322 22222 2356778889999999999 8999999999888
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhc--cCCccchhhhhhhcCCCCChhhhhhhhh
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGA--GGIRPCNIAFGADQFDTTTEKGRAQLES 180 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~--g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 180 (579)
.++..+.+.+.. + ++++ +.++.. +.......++++|...+ +.|..
T Consensus 102 ~~l~~~~~~~~~-----------------------~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~------~~R~~ 148 (463)
T KOG2816|consen 102 TILPALCLLFQG-----------------------Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSE------EERSS 148 (463)
T ss_pred HHHhHHHHHHHH-----------------------H-HHhh---hcccccchhhhhhhhhhheeeccch------hHHHH
Confidence 888877776643 2 2222 333333 33455556777777663 35778
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 181 FFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 181 ~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
.+++.+.....+..++|.+++++.+..|....|.++++..++.++......|+...++.+.. . ..+.
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~------------~~~~ 215 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-A------------TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-c------------cccc
Confidence 88888888889999999999999998999999999998888777666555554332211110 0 0000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFI 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 340 (579)
..+.+. ..+- ..++++.... ....|..+..+ + ......+-
T Consensus 216 ~~~~~~------------------~~~~------------------~~~~~~~~~~--~~~~r~~l~l~-l-~~~~~~~~ 255 (463)
T KOG2816|consen 216 LTPGSL------------------DSSH------------------VADAFQSLTK--VGPDRLLLLLL-L-VAFLSSLP 255 (463)
T ss_pred cCCCcc------------------cchh------------------hhhhhhhhcc--cCCCccchHHH-H-HHHHHHHH
Confidence 000000 0000 0001100000 00111111111 1 11111111
Q ss_pred hhhccchHHHHHhhhcCCCCCCccccChhh---HHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHH
Q 039312 341 SMDQQNTFGILQAIQMNKSVGPHFKMPPAW---MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~ 417 (579)
-..+.... .........+ ..... +.........+...+ ..|+..+.. .....+..|+..-
T Consensus 256 ~~~~~~~~---~~~yl~~~f~----w~~~~~s~~~~~~~~~~~i~~l~----~~~~l~~~l------~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 256 EAGGASDV---LLLYLKAKFG----WNKKEFSDLLSLVSILGIISQLL----LLPLLSSIL------GEKRLISLGLLSE 318 (463)
T ss_pred HhcCceeE---EEEEEeeecC----cCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------hhhhHhhHHHHHH
Confidence 11100000 0111222222 22222 222222222222222 122233322 2224778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHH
Q 039312 418 ILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASY 497 (579)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~ 497 (579)
.+..++.++.. ..|. ...............|...+++..+...+.+|+.+++.....++.+.
T Consensus 319 ~~~~~~~af~~-----------------~~w~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~ 380 (463)
T KOG2816|consen 319 FLQLLLFAFAT-----------------ETWM-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV 380 (463)
T ss_pred HHHHHHHHHhc-----------------cchh-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence 99988888875 3333 33445555566778899999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 039312 498 VSSLVINIIHRVT 510 (579)
Q Consensus 498 l~~~l~~~v~~~~ 510 (579)
+++.+.+.+...+
T Consensus 381 ~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 381 VSPALYGNIFALT 393 (463)
T ss_pred hhHHHHHHHHHHH
Confidence 9999987765444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=114.75 Aligned_cols=178 Identities=16% Similarity=0.063 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHH-HHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVT-IWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~-~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
+..++..++.....+....+.++|+.+.+|++..+.+.+.. ...++..++.+++|+++|| +|||+.++++.++..++.
T Consensus 225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 33333344555666666677888988889999999999885 4557899999999999999 899998877666555544
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
+.+...... ..+...+.+..++..+..|...+...++..+..+++ ..++.+++.+.
T Consensus 304 l~~~~l~~~------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~------~~~t~~gl~~s 359 (491)
T PRK11010 304 AGYWLLSIT------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS------FSATQFALLSA 359 (491)
T ss_pred HHHHHHHhc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHH
Confidence 333221100 012223333444444444444455567677777642 23556888888
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGR 231 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 231 (579)
..++|..+++.+.|++.+.+||+..|.+.+++.+.+++.....+
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888999999989999999888877777766655543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-08 Score=98.56 Aligned_cols=82 Identities=11% Similarity=-0.050 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---------
Q 039312 136 WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTN--------- 206 (579)
Q Consensus 136 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~--------- 206 (579)
.++..++++.++.|.|.+...++.++++++..++++ +++..++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 367889999999999999999999999999987532 34557887778899999999999876621
Q ss_pred -------cchhHHHHHHHHHHHHH
Q 039312 207 -------VSWVLGFAIPTACLAFS 223 (579)
Q Consensus 207 -------~g~~~~f~i~~~~~~~~ 223 (579)
.+|+++|++.++...+.
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~ 105 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVL 105 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36889988655543333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-09 Score=113.88 Aligned_cols=168 Identities=11% Similarity=0.030 Sum_probs=115.4
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
.+..+++.+++|++..+.+.......++..++.+++|+++|| +|||+.+.++.++..++.+++.+...... .+
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 376 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--TG---- 376 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--CC----
Confidence 344455566789999888999999999999999999999999 89999999988777777766664321000 00
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTN 206 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~ 206 (579)
.....+...+....+..+....+..+...++..|.+|+ +.|++..+..+...++|.+++|.+.+++.++
T Consensus 377 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 377 -----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL------SLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred -----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000222222222222222233446667777899884 4467888888889999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 207 VSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 207 ~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
.+|++.|++.++..+++.++.++..+
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred cCccceehhHHHHHHHHHHHHheecc
Confidence 89999888877666655555444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-09 Score=106.82 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHh--cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNN--YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
+.++...+..++....-.++..+++.|+.+. +|++..+.+...+.+..+..++.+++++++|| +|+||++.++.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 3445444444444445566778899999754 79999999999999999999999999999999 89999998887777
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
+++.++..... +.. ...+..+.|++.+.+.|...++..+.+++.. .++++.
T Consensus 219 ~~~~~l~~~~~----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~asai- 269 (310)
T TIGR01272 219 VLLSIGAALTH----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGSGI- 269 (310)
T ss_pred HHHHHHHHHcC----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHHH-
Confidence 77664444322 111 2234557899999999999998888887421 122332
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTAC 219 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~ 219 (579)
. ....+|+++.|.+.|.+.+..|.+.+|++..++
T Consensus 270 -~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 270 -L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred -H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2 456799999999999999988988888765543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=106.76 Aligned_cols=171 Identities=13% Similarity=-0.061 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
++...+...+.....+......+.|+.+.+|++..+.+........+..++.++.|+++|| +|+|+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 4444444444445555555667888888899999999988887778888999999999999 899999998888777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.++.+.... ...+...++++.++.|+|.+...+..........+ +.+++..+.++.
T Consensus 296 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~ 351 (406)
T PRK15402 296 LLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-------VSKGTVSAAMGM 351 (406)
T ss_pred HHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-------ccccHHHHHHHH
Confidence 766654310 01134556777888899988877666554433222 335667777777
Q ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 188 SFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
...+|..+|+.+.+++.+..++....+.+++..++.
T Consensus 352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 888999999999999877777665444444443333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-09 Score=99.81 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=128.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
+.....+|.+..+.++..++.+=....-+.++++++|+|+..++.+.+.....+....++-|.++|| .||+-..+.+..
T Consensus 260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~ 338 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASAC 338 (459)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHH
Confidence 3455677877777777777777777778899999999999999999999999999999999999999 799988776655
Q ss_pred H-HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhh
Q 039312 102 A-SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLES 180 (579)
Q Consensus 102 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 180 (579)
+ ..++...+.+.. +-=+++..++|+.......+.++.++...|+ ++.++
T Consensus 339 ~~tl~~H~~l~Ft~------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE------~qLGT 388 (459)
T KOG4686|consen 339 ILTLLGHSGLFFTF------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPE------EQLGT 388 (459)
T ss_pred HHHHHHhhhHHhhh------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH------HHhcc
Confidence 4 555666666543 1124566677777776666667777787774 67899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccc---hhHHHHHHHH
Q 039312 181 FFNWWYFSFTVALVVVLTGVVYIQTNVS---WVLGFAIPTA 218 (579)
Q Consensus 181 ~~~~~~~~~~ig~~i~~~~~~~l~~~~g---~~~~f~i~~~ 218 (579)
+|+..+...|+|-++.|.+.+.+.++-| |--.|.+...
T Consensus 389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 9999999999999999999999987544 4445544333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-09 Score=108.18 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGML 108 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~ 108 (579)
+..+...++.....+....++++|+.+.+|++..+.+...+...++..++.++.|+++|| +|+|+.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHH
Confidence 433344444444555556677888888899999999999999999999999999999999 8999999888877777765
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHH
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS 188 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 188 (579)
++....+ +.....+..++.++|.++..+.......+..++ + +.++.. ..+..
T Consensus 281 ~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~---~~~~~~--~~~~~ 332 (382)
T PRK10091 281 MLFFFGG---------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKG--G---ELLGAA--GGQIA 332 (382)
T ss_pred HHHHHHh---------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc--c---hHHHHH--HHHHH
Confidence 5543220 223344444455565554444334333333332 1 112222 22446
Q ss_pred HHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHH
Q 039312 189 FTVALVVVLTGVVYIQTN-VSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 189 ~~ig~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~ 226 (579)
.++|.++||.++|++.+. .+|+..+.+.++..++.+..
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 689999999999998874 68999988877655544433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.26 Aligned_cols=153 Identities=12% Similarity=0.011 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-ChhHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-GRFRTLLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~l~~~~~~~~ 104 (579)
+.++...+...+....++++..+++.|+++ .|++..+.+.+.+...++..++.++.|+++|| + +||+++.++.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL 274 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence 344555555566677788888899999865 79999999999999999999999999999999 7 56677777777777
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+.+.+.. +.... ...++.|++.|...|...+.+.+..++ .+.++..+++
T Consensus 275 ~~~~~~~~~~----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~-----~~~~g~~~~~ 326 (355)
T TIGR00896 275 VGLCGLLFAP----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQ-----AAQAAALSAM 326 (355)
T ss_pred HHHHHHHHhh----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccC-----HHHHHHHHHH
Confidence 7776665543 11111 134678999999888877776665553 1334566777
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS 208 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g 208 (579)
.+...++|.+++|.+.|++.++.|
T Consensus 327 ~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 327 AQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777788899999999999987665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-09 Score=111.31 Aligned_cols=157 Identities=12% Similarity=-0.020 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.....+...++...++.......+.|++..+|.+..+.+++.....++..++.++.|+++|| +|||+++.++.++..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 34445556666666665555667777777899999999999988888888888999999999 89999999888877776
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
..++.+.. + ......+.+..++.|++.+...+...++..+..|+ +.++..+++++
T Consensus 341 ~~~~~~~~--~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~ 395 (471)
T PRK10504 341 SLLFMLVA--L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD------NLASSGNSLLS 395 (471)
T ss_pred HHHHHhcc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HhccchHHHHH
Confidence 66555432 0 01233344455667888888888888888888874 34677788888
Q ss_pred HHHHHHHHHHHHHHhhhccccch
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
....+|.++|+.+++.+.+..|+
T Consensus 396 ~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 396 MIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999998887665544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-09 Score=111.51 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.++...+..++.....+++..+++.|+++..|++..++++....+.++..++.+++|+++|| +|+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence 35555556666667778888999999998899999999999999999999999999999999 76543222333222221
Q ss_pred HHHHH-HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 107 MLMMT-LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
.+... +.. .+ ..+........+..|++..+..........|.+|+ +.|+++.++.
T Consensus 331 ~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~ 386 (438)
T TIGR00712 331 TIAVIVYWM-NP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFT 386 (438)
T ss_pred HHHHHHHHh-cC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh------hheeeehhhh
Confidence 11111 111 00 00222223333444444333222223456677773 4467788887
Q ss_pred HHHHHHHH-HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 186 YFSFTVAL-VVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 186 ~~~~~ig~-~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+...++|+ +++|.+.|.+.+..||...|++.++..+++++..++.
T Consensus 387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 77777764 6899999999998899999987776655555544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-09 Score=111.62 Aligned_cols=173 Identities=12% Similarity=-0.001 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhH-----HHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFR-----TLLVGSIA 102 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-----~l~~~~~~ 102 (579)
.|...+..++.....+++..+++.|+.+.+|++..+++.+.+.+.++..++.+++|+++|| +|||+ ..+.. +.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~-~~ 331 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALW-IV 331 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHH-HH
Confidence 3444444444445556667788999988899999999999999999999999999999999 78762 22211 11
Q ss_pred HHHHHH-HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 103 SLLGML-MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 103 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
..++.+ .+.+.. ..+.....+..++.+++.+...+...+++.+..+ +.++..
T Consensus 332 ~~l~~i~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~ 384 (476)
T PLN00028 332 QTLGGVFCIWLGR--------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-------RSLGVI 384 (476)
T ss_pred HHHHHHHHHHhcc--------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-------hhchhh
Confidence 222211 111111 0023333444445555554444444454555433 345677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+++.+.+.++|+.+++.+.+ .....+|+.+|++.++..+++.++.++.
T Consensus 385 ~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 385 SGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 77776667777777776643 2234569999998877777666655544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=104.80 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhH-HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLI-SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
+.++......++....+++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|+++|| +|||+.+..+.++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 345555555666666666666 667777776799999999999999999999999999999999 899999888766666
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++...+.+.. + +.+.+++..++.|++.+...+...+++.|..|+ +.|++.++.
T Consensus 289 ~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~ 341 (365)
T TIGR00900 289 LAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA------ELLGRVFGA 341 (365)
T ss_pred HHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 6655555433 1 245677788889999999999999999999883 457888999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS 208 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g 208 (579)
++...++|..++|.++|++.+.+|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999877543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=108.59 Aligned_cols=164 Identities=9% Similarity=-0.046 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHH-hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHH-HHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQN-NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTL-LVGSIASL 104 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l-~~~~~~~~ 104 (579)
.++...+..++....++++..++|.|+.+ ..|++..+++.......++..++.+++|+++|| +|||+.. ....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence 45556667777888889999999999976 357788899999999999999999999999999 7977753 33333333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++..+ .... + +....+.+..+.++|.....+...+...+.+| .+.|+.++++
T Consensus 322 ~~~~~-~~~~--~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~a~g~ 373 (412)
T TIGR02332 322 AGWLL-ASAT--D-------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS------LQARAIAIAV 373 (412)
T ss_pred HHHHH-HHhc--C-------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccc------hHHHHHHHHH
Confidence 33211 1111 0 11111222222333333322333333345555 2557889999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTAC 219 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~ 219 (579)
.+...++|++++|.+.+.+.+..| |+..|++.++.
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999988764 99888766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-08 Score=104.08 Aligned_cols=166 Identities=7% Similarity=-0.015 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++...+..++....+.....+++.|+. +.|++..+.+.+.+....+..+..++.|++.|| +|+|+.+.++.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 34455555556556666667778888885 589999999999998888888889999999999 8999999988888877
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++.... +.+.+++..++.|++.+...+....+..++ ++ +.+++..+.+
T Consensus 283 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~ 333 (382)
T PRK11128 283 RWGLMGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG------SEVIRLQALY 333 (382)
T ss_pred HHHHHHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH------hhhHHHHHHH
Confidence 776665544 556677888889999888777777766664 31 1234566665
Q ss_pred H-HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 186 Y-FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 186 ~-~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
. ....+|..++|.++|++.+.+|+. .|+..++..+.+
T Consensus 334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 4 455778899999999999988874 555555444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=104.97 Aligned_cols=186 Identities=13% Similarity=0.026 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+..|.+.+..++.-.++.+...++|.|+++.+ +............+...+..+++|+++|| +|++|+++++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH
Confidence 34677777777766666667778888987765 33333333445568889999999999999 8999999988877777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCCh-------------
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE------------- 172 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------------- 172 (579)
....+.+.. |. ....+...+.+..+.+.++.|.-+.++..++.+.||+++.
T Consensus 329 ~~~~~~l~l--p~--------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~ 392 (462)
T PRK15034 329 FSALLFLTL--PG--------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA 392 (462)
T ss_pred HHHHHHHHh--cc--------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHH
Confidence 665444332 21 0122456666666666777788888888888888874111
Q ss_pred --hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHHhc
Q 039312 173 --KGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV-SWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 173 --~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+.+++.+...++......+|+.+-|.+.+...+.. ++...|+...+..++++.+.+..
T Consensus 393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 11124567777777788888888887766665443 47778887777666665555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=104.08 Aligned_cols=168 Identities=9% Similarity=-0.020 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++..+...++.....++...+.++++.+++|++..+.+.+...+.++..++.++.|++.|| .+| +.++.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHH
Confidence 344544444455555566666676565567789999999999999999999999999999999 554 444444444333
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
...++.... .+.+.+.+..++.|++.+...+...+++.+..|++ .++..+.+
T Consensus 294 ~~~~l~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 345 (394)
T PRK10213 294 SALVLTLWG---------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQ 345 (394)
T ss_pred HHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHH
Confidence 333332222 03455666778889999998888888888877632 12334445
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFS 223 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 223 (579)
....++|..+|+.++|++.+..|++..++.+++..++.
T Consensus 346 ~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 346 VAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 55678999999999999999889888888776544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=106.11 Aligned_cols=177 Identities=13% Similarity=0.040 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHH--------HH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRT--------LL 97 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~--------l~ 97 (579)
+.++...+..++....++.+..++|.|+.+.+|++..+.++..+...++..++.+++|+++|| +++|+. +.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence 467777788888888889999999999999999999999999999999999999999999999 565421 11
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhh
Q 039312 98 VGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQ 177 (579)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (579)
.+......+..++.... .. .+....++...+.+.+.++..+.......|..| +.
T Consensus 340 ~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~ 393 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY-LS------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------RF 393 (465)
T ss_pred HHHHHHHHHHHHHHHHH-cC------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-------hH
Confidence 11111111111111111 00 022233344444455555555554444445444 34
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccc---cchhHHHHHHHHHHHHHHHHHHh
Q 039312 178 LESFFNWWYFSFTVALVVVLTGVVYIQTN---VSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 178 r~~~~~~~~~~~~ig~~i~~~~~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
++...++.+...++|+.++|.+.+++.+. .+|...|++.++..+++.++...
T Consensus 394 ~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 67888888889999999999999988754 34888888887776666555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-08 Score=104.15 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=103.8
Q ss_pred HHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 039312 41 ASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLR 120 (579)
Q Consensus 41 ~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (579)
..+.+..+++.|+.+ .|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.++..++..++.... .
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP---Q-- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc---c--
Confidence 334466778888765 69999999999999999999999999999999 8999999888776665544443322 0
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039312 121 PSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~ 200 (579)
.....+....+..+++..+..+..+.++.|.+|+ +.|+++++..+...++|+.++|.+.
T Consensus 319 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 319 ---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL------EVRGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred ---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH------HHHhhhhhHHHHHHhHHHHHHHHHH
Confidence 0111122222222233334445667778898884 4578889988888899999999999
Q ss_pred hhhccccchhHHHH
Q 039312 201 VYIQTNVSWVLGFA 214 (579)
Q Consensus 201 ~~l~~~~g~~~~f~ 214 (579)
+++.+.+|+....+
T Consensus 378 g~l~~~~g~~~~~~ 391 (426)
T PRK12307 378 TWLGITMGLGAALT 391 (426)
T ss_pred HHHHHcccHHHHHH
Confidence 99998888654433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-07 Score=96.36 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=112.5
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc--cC--hhHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY--LG--RFRTLLVGSIASLLGMLMMTLTAGIHQLRPS 122 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~--~G--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (579)
.-+..|+++++|+++++.....+...+-.. .-++.|.++|-+ +| ||.=++++.++..++...+.+.. .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~---- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A---- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c----
Confidence 345577899999999998877666555443 446889999984 23 44445556666655555555433 1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039312 123 SCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVY 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~ 202 (579)
...+.....+..++..+|........-+++.|...++. ..++...++.+....+|..++..+.|.
T Consensus 82 -----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p----~~~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 82 -----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP----ESRGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred -----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 01133445556667788888888888999999876432 226677788888889999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 203 IQTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 203 l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
+.+..+++..|.+.+++..+..+..++..+
T Consensus 147 l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 147 LLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 998889999998887665555444444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.2e-09 Score=107.27 Aligned_cols=162 Identities=13% Similarity=0.108 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH--H
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA--S 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~--~ 103 (579)
+.++...+..++.....+++..+++.|+.+.+|++..+.+...+.+.++..++.+++|+++||..+||+..+..... .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555566666667777788889999999999999999999999999999999999999999833344433221111 1
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++........ ..+.....+..++.|+...+..+....+..|.+|+ +.|+++.+
T Consensus 296 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g 349 (379)
T TIGR00881 296 IVSLLVYWLNP--------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK------KAAGTAAG 349 (379)
T ss_pred HHHHHHHhcCc--------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc------chhHHHHH
Confidence 11111111100 01233444555566666556566666778888884 45678899
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHH
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVSWVLGF 213 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f 213 (579)
+++...++|..++|.+.|++.+.+||+..|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 988899999999999999999999998654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=106.30 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh-HHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYL-QNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+...+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.|| +|||+++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence 33444445555566666777888886 55789999999999999999999999999999999 89999998887666655
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
..+..+.. +. ..+.+..+.|++.+.+.|+..+...+.+++.. +.+-++..
T Consensus 339 ~~~~~~~~----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~ 388 (438)
T PRK10133 339 CLISAFAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIV 388 (438)
T ss_pred HHHHHHcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHh
Confidence 54443322 11 12455677899999999999999999887421 12222222
Q ss_pred HHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSIT 225 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 225 (579)
...+|++++|.+.|++.+..| -+..|+++.+..+..+.
T Consensus 389 -~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred -HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 234688888899999988887 78888877665544433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.6e-09 Score=109.66 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++..++..++.....+......+.|.+..++ +..+.+.+.....++..++.++.|+++|| +|||+++.++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 445555666666666666555555555554555 55667777777888899999999999999 8999999999888877
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCCh-hhhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~ 184 (579)
+.+.+.+.. .+...+++..++.|++.+...+...++++|..+.++. .+.+.++..++.
T Consensus 300 ~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 300 GYLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 776665432 1344566667778899998889999999998764321 122346788898
Q ss_pred HHHHHHHHHHHHHHHHhhhccccch
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
++....+|..+++.+.+++.+..||
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9889999999999999988766555
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-08 Score=102.44 Aligned_cols=175 Identities=12% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHH-HHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSG-SNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
++..+...++...+......+.+.|+.+ .|++..+.+.+...... ...++.+++|++.|| +|+|+++.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 4444555556666666667778888875 79999999999887764 566778999999999 89999998877655333
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
..........+. ......++...++.+++.|...+...+...+..++ .+.+++.++..+
T Consensus 288 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~ 346 (390)
T TIGR02718 288 ALLWFAQAAFWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-----GDQAGTDVTAVQ 346 (390)
T ss_pred HHHHHHHHHccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----ccchHHHHHHHH
Confidence 322222110000 00222333444445566666666667776666553 134577788888
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 225 (579)
...++|..++|.++|++.+..||+..|++.++..+++++
T Consensus 347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 888999999999999999988999898887765555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-08 Score=105.28 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+...+...++..+....+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+| +++++.+..+.+++.++
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~ 297 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALA 297 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHH
Confidence 34444455555556555666778888899999999999999999999999999999999999 89999998888888887
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.+.++++. +.+...++.++.|++.........+.+....| .+.|++.++.++
T Consensus 298 ~~~lal~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P------~~~~GRv~si~~ 349 (524)
T PF05977_consen 298 LLLLALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVP------DWVRGRVFSIYQ 349 (524)
T ss_pred HHHHhcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHhHHHHHHH
Confidence 77777765 55667777788888888877777777777777 367899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 187 FSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 187 ~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
.....+..+|.++.|++.+.+|-+..+.++++..+++.++.
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999888888776655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-06 Score=87.17 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 039312 54 QNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQP 133 (579)
Q Consensus 54 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (579)
.+++|++..|.+.+.....+.+.+..++.|.++|| +|||+.-++.++++.++.+.-- ..
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~-~~------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKH-SS------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh-cc-------------------
Confidence 35799999999999999999999999999999999 8999998888888777775322 22
Q ss_pred CchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHHHHHhhhccccc--hh
Q 039312 134 QGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY-FSFTVALVVVLTGVVYIQTNVS--WV 210 (579)
Q Consensus 134 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~~~~~~~l~~~~g--~~ 210 (579)
++..++++|++.|+++.....+--+.+.....+++- +++....-++... +...+-++.+..++-++.+..+ -.
T Consensus 120 ---~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v 195 (354)
T PF05631_consen 120 ---NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV 195 (354)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence 577899999999999998887766654433332111 1122333343322 2223334444444445555444 47
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 039312 211 LGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 211 ~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
.+|..+....+++.++.....+
T Consensus 196 aPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 196 APFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 8898888777766665544333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-10 Score=125.83 Aligned_cols=192 Identities=15% Similarity=0.160 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHH
Q 039312 34 NETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLT 113 (579)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~ 113 (579)
..+++ ...++.......-+.+.++++..+.|++.+.+.++..+..++..++++| .-|-|.+-+|.++..+|.+++++-
T Consensus 11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhcc
Confidence 34444 6677777777788899999999999999999999999999999999999 466677888899999999888875
Q ss_pred hhh-cccCCCC-----C-C--CCCCC---------------C---CCCch-hHHHHHHHHHHHHHhccCCccchhhhhhh
Q 039312 114 AGI-HQLRPSS-----C-G--DPPHC---------------P---QPQGW-QFCVLFAALTLLSIGAGGIRPCNIAFGAD 165 (579)
Q Consensus 114 ~~~-~~~~~~~-----~-~--~~~~~---------------~---~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 165 (579)
+.+ +.+.... + . +...| . ....+ -+..++++.++.|+|....++...+++=|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 432 1111100 0 0 01123 1 11112 34678899999999999999999999888
Q ss_pred cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc---------------------ccc-hhHHHHHHHHHHHHH
Q 039312 166 QFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT---------------------NVS-WVLGFAIPTACLAFS 223 (579)
Q Consensus 166 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~---------------------~~g-~~~~f~i~~~~~~~~ 223 (579)
..++++ -.-..+.++.+..+|.++|.++++.... +.| |...|++.++..++.
T Consensus 169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 777422 3455677888888999999888876431 123 888998887766655
Q ss_pred HHHHHhccce
Q 039312 224 ITLFLLGRRC 233 (579)
Q Consensus 224 ~~~~~~~~~~ 233 (579)
.+.++++.++
T Consensus 243 aipl~~FPk~ 252 (539)
T PF03137_consen 243 AIPLFFFPKK 252 (539)
T ss_dssp ----------
T ss_pred HHHHHcCCcc
Confidence 4544444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=104.30 Aligned_cols=169 Identities=8% Similarity=0.058 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhc---CCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNY---NLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l---~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
++......++....+.......+.|+.+.+ +.+....+.+.+...+...++.++.|++.|| +|||+.+.++.++..
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHH
Confidence 333333333433444444456777877665 5566677888888888888899999999999 899999999888877
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++..+...+. +.+.+++..++.|++.+........+..+..++ +.+++.++.
T Consensus 296 l~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~at~~~~ 347 (396)
T TIGR00882 296 VRIIGSSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV------RLSATIYLI 347 (396)
T ss_pred HHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------ceEEEeehH
Confidence 7776655543 445566777788887655444444445555542 223444544
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 039312 185 -WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSIT 225 (579)
Q Consensus 185 -~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 225 (579)
++.+..+|..+++.++|++.+..||+.+|++.++..++..+
T Consensus 348 ~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 348 GFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 55688999999999999999988999999887766554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-08 Score=101.36 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=103.9
Q ss_pred HHHHHHhHHhcCCchhHHHHHHHHHH-HHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 039312 47 SNITVYLQNNYNLGGVLLVNIVTIWS-GSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG 125 (579)
Q Consensus 47 ~~~~~y~~~~l~~s~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (579)
.+.+.|+.+++|++..+.+++..... .+..++.+++|++.|| +|||+.+.++.+...+..+.+......+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 34456777789999999999886655 4578889999999999 8999988777766655544333221011
Q ss_pred CCCCCCCCCchhHHHHHHHH----HHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039312 126 DPPHCPQPQGWQFCVLFAAL----TLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV 201 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~ 201 (579)
.+.+.+.+.. +..|++.+...+....++.+.+|.+ .++.+....++|..+++.++|
T Consensus 301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~G 360 (402)
T PRK11902 301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----------QYALLSALASVGRVYVGPTSG 360 (402)
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 0223333333 3455666666777777777776631 134444445677776677899
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 202 YIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 202 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
++.+..||+..|.+.++..++++++.+..
T Consensus 361 ~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 361 YLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887766665554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-08 Score=100.21 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
++...+...+....++....+.+.|+.+.+|+++.+.+.+.....++..++.++.|+++|| +|||+.+..+.++..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 3444444445555666677777888888999999999999999999999999999999999 899999988887777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
+++......+ ......++....+.|++.+...+.......|.+|+ .+++..+.++.
T Consensus 287 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~ 342 (385)
T TIGR00710 287 VLLEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGT 342 (385)
T ss_pred HHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHH
Confidence 6665543110 01233455556678888888888888887777652 24556666555
Q ss_pred HHHH-HHHHHHHHHhhhccccchhHHHHHH
Q 039312 188 SFTV-ALVVVLTGVVYIQTNVSWVLGFAIP 216 (579)
Q Consensus 188 ~~~i-g~~i~~~~~~~l~~~~g~~~~f~i~ 216 (579)
.... |+..++. .+.+.+..+|...+...
T Consensus 343 ~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 343 LRLVLGAIVGYL-VSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHH-HHhccccChHHHHHHHH
Confidence 5544 4544544 44555555555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-08 Score=104.01 Aligned_cols=157 Identities=10% Similarity=0.011 Sum_probs=106.9
Q ss_pred HHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 039312 51 VYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHC 130 (579)
Q Consensus 51 ~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (579)
+++.+.+|++.....+......+...++.+++|+++|| +|||++++.+.++..++.+.+......+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~------------- 360 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ------------- 360 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC-------------
Confidence 44456789887777777777788889999999999999 8999999999988888877766543100
Q ss_pred CCCCchhHHHHHHHHHHHHHhccC-CccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh------hh
Q 039312 131 PQPQGWQFCVLFAALTLLSIGAGG-IRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV------YI 203 (579)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~------~l 203 (579)
.... ....+..+.+++.+. ..|...+++.|.+|+ +.|+++.++.+...++|..+++.+.+ ++
T Consensus 361 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~ 429 (479)
T PRK10077 361 ----APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWL 429 (479)
T ss_pred ----cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCCh------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccch
Confidence 0011 222333334444433 346778899999984 45788888888788888887765554 34
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 204 QTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 204 ~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
.+.++|+..|++.++..+++.++.++..+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 430 VAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 45678888888766655555444443333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=108.52 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++...+..++..+.+++...+++.|+++.+|++..+++.......++..++.+++|++.|| +|||+.+.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 344555666667777888888899999999999999999999999999999999999999999 8999999988887777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++.+... ...+...+....++.|+|.+...+.......+..|+ +.++++.+.+
T Consensus 334 ~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 389 (485)
T TIGR00711 334 GFYWRAFTFT------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP------HKIARGSSLS 389 (485)
T ss_pred HHHHHhccCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHhHHHHHH
Confidence 7766653210 011344556667788999988777767767777763 4567888888
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 039312 186 YFSFTVALVVVLTGVVYIQTN 206 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~ 206 (579)
+...++|..+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=107.31 Aligned_cols=154 Identities=10% Similarity=-0.036 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.+....+..++.....++...+++.|+++.+|+++.+++.......++..++.+++|++.|| +|||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 445556666667777788888899999999999999999999999999999999999999999 8999998888888877
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++.... . ..+.+......++.|+|.|...+.....+.+..|+ +.++.+.+.+
T Consensus 338 ~~~~l~~~~-~------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~------~~~g~~~~~~ 392 (495)
T PRK14995 338 SFYGLAMTD-F------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP------EKAAAAGAIE 392 (495)
T ss_pred HHHHHHHhc-C------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH------HhcchHHHHH
Confidence 776655432 0 11333455667788999999888778777777773 4456777888
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 039312 186 YFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~ 205 (579)
+...++|..+|+.+.+.+.+
T Consensus 393 ~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 393 TMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999998887754
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=100.29 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.+..-+...++.+=+.-.+..+...|-...+|++..+...+....++.+.++++++|+|+|| +|-|++++++++++.+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence 456666667777766777788889999999999999999999999999999999999999999 8999999999988888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
..+...+.. ....+.+.-++.|+..|+.++..-++.++..|+++ -+++|++|
T Consensus 331 ~~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgly 382 (438)
T COG2270 331 AALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLY 382 (438)
T ss_pred HHHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehh
Confidence 777666544 23345555577899999999999999999999643 35579999
Q ss_pred HHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~ 228 (579)
.+....+..+||.+.+.+.+..| -|..+....++..+++++++
T Consensus 383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 99999999999999888876544 66666655555555544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-08 Score=102.09 Aligned_cols=146 Identities=13% Similarity=0.014 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
.+...+..++....++.+..+++ ++.+++|++..+.+...+...++..++.+++|+++|| +|||+.+....+......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 329 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence 34444555566667777777776 7777899999999999999999999999999999999 899855444333333222
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.+..... +...+++..++.|++.++..+...+++.|.+|+ +.|++++++.+.
T Consensus 330 ~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~ 381 (398)
T TIGR00895 330 LVGSTLF----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT------AIRATGVGWAIG 381 (398)
T ss_pred HHHHHhh----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH------HHHHHHHHHHHH
Confidence 2222122 334566677788999999999999999999984 457888999888
Q ss_pred HHHHHHHHHHHHHhhh
Q 039312 188 SFTVALVVVLTGVVYI 203 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l 203 (579)
...+|..++|.++|++
T Consensus 382 ~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 382 IGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhHHhc
Confidence 8999999999998875
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=106.46 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHH------------HHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHH
Q 039312 34 NETFEKLASMSLISNITVYLQNNYNLGGVLLVN------------IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSI 101 (579)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~------------i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~ 101 (579)
..++..+.+|++..+.+.+++ ..|++..+.+. ......++..++.+++++++|| +|||++++++.+
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHH
Confidence 334456678888888877774 67886543221 1222334556677899999999 899999988887
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..++..++.+... +. . +...+....+...++..+..+....+.+|.+|+ +.|+++
T Consensus 374 ~~~~~~~~l~~~~~-~~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~------~~R~~~ 429 (502)
T TIGR00887 374 ILTVLFFVLGFAYN-HL----------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT------RYRSTA 429 (502)
T ss_pred HHHHHHHHHHHHHH-hc----------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch------hHHHHH
Confidence 77766655554320 00 0 111111111112222333445667778999994 567889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc----------cchhHHHHHHHHHHHHHHHH
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTN----------VSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~----------~g~~~~f~i~~~~~~~~~~~ 226 (579)
.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9998889999999999999988763 34455666655554544343
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=97.86 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=86.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHH
Q 039312 370 WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLT 449 (579)
Q Consensus 370 ~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (579)
...+.+-.+-+++-++..++ ++|. +....+..|+....+-++...+.+ ++|.
T Consensus 410 v~~a~~~~gEI~~~ffs~kl----I~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~-----------------n~W~ 461 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKL----IEKI-------GHVNVMYLGLACNVGRFLYYSYLQ-----------------NPWM 461 (618)
T ss_pred ehhhhhccchHHHHHHHHHH----HHHh-------cccceeeehhhHHHHHHHHHHHhc-----------------Cchh
Confidence 45555666656665655444 6775 344667778888777777777665 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccc
Q 039312 450 LLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAF-FLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 450 li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
+++.=++.++...+++.+.-+|+...+|+++|.+++++. ...-++|..+|+++++.+....+
T Consensus 462 vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 462 VLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 777779999999999999999999999999999999986 56667888888888887765543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-08 Score=102.04 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.....++..++..++........+.|.+..+|.+ ...+.+.....++..++.++.++++|| +|+|+++..+.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 45566677777777777777777777777778877 556777778889999999999999999 8999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChh-hhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEK-GRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~ 184 (579)
+.+++.+.. ..+.+.+++..++.|++.+...+...++++|..+.++.+ +++..+..++.
T Consensus 303 ~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~ 362 (428)
T PF13347_consen 303 GFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV 362 (428)
T ss_pred HHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence 998887764 125677888889999999999999999999998854322 23345777788
Q ss_pred HHHHHHHHHHHHHHHHhhhccccch
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
+.+...+|.++++.+.+.+.+..|+
T Consensus 363 ~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 363 NSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8889999999999988877544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.2e-08 Score=102.16 Aligned_cols=172 Identities=10% Similarity=0.035 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHH--hcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQN--NYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.++...+..++..+.+.....+.+.|+.. +.+.+....+.+............++.|++.|| +|+|+.+.++.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence 34444455555555544444556666543 345566667777777777777777889999999 799999998887777
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++...+.+.. .+.+.+.++.++.++|.+...|...+++.+..|+ +.++++++.
T Consensus 286 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~------~~~~~~~~~ 338 (395)
T PRK10054 286 IGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP------GMKASYFSA 338 (395)
T ss_pred HHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc------ccceehHhH
Confidence 7776665432 0344566677889999888888888888888874 234555665
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
.. ...+|.++||.++|++.+..|....|++.+...++++++.
T Consensus 339 ~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 339 QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 43 5668999999999999998898888877655555444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-08 Score=114.66 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchh-HHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGV-LLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
.++..++..++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++|| +++++++.++.++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLAL 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHH
Confidence 344444444455555566777889999999999999 99999999999999999999999999 8999988888777777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+.+++.+.. +.+.++++.++.|++.++..+...+++.+..|+ +.|+++++++
T Consensus 312 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~rg~~~~~~ 363 (1146)
T PRK08633 312 SLFLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE------KELGKVLAAN 363 (1146)
T ss_pred HHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc------cchhhhhHHH
Confidence 766666544 445566777888999998888888888888874 4467888888
Q ss_pred HHHHHHHHHHHHHHHhhhcc-ccchhHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQT-NVSWVLGFAIPTA 218 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~-~~g~~~~f~i~~~ 218 (579)
+...++|.++++.+++.+.. .+++...|++.+.
T Consensus 364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888888777766543 2345555554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=104.97 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++...++.++...+++......+.|++..+|.+....+.......++..++.++.++++|| +|+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 345555556666666666666666667777788877666655555456678889999999999 8999999999988888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCCh-hhhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~ 184 (579)
+.+++.+.. ..+.+.+++..++.|+|.+...+...++.+|..+.++. .+.+..+..++.
T Consensus 307 ~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~ 366 (448)
T PRK09848 307 GYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL 366 (448)
T ss_pred HHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence 877666532 11445566777888999999999999999998774322 122345777788
Q ss_pred HHHHHHHHHHHHHHHHhhhccccch
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
+.+...+|.++++.+.+.+.+..||
T Consensus 367 ~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 367 FSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999988876544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=98.13 Aligned_cols=152 Identities=12% Similarity=0.078 Sum_probs=106.1
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (579)
....++|.|+++..| +..+.+.+.+....+......+.+++.||+++.++.++.+.++..++..++....
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345567788776555 6678888877776666555555566665546777777777777777766665544
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039312 124 CGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l 203 (579)
+...+.+...+.+++.+...|...+++.+..|+ +.+++.++.++...++|..+||.++|++
T Consensus 296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA------RARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc------ccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 344455566778888888888888989998884 4567888888889999999999999999
Q ss_pred cccc---c-hhHHHHHHHHHHHHHH
Q 039312 204 QTNV---S-WVLGFAIPTACLAFSI 224 (579)
Q Consensus 204 ~~~~---g-~~~~f~i~~~~~~~~~ 224 (579)
.+.. + ....+++..+..+++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 357 FDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHhhcCCcchHHHHHHHHHHHHH
Confidence 7753 2 2445544444444443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-07 Score=95.00 Aligned_cols=159 Identities=12% Similarity=-0.008 Sum_probs=112.6
Q ss_pred HHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 39 KLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQ 118 (579)
Q Consensus 39 ~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (579)
......+...++.|+++.+|.+..+.|.+.....++..++.++.+++.|| .++++++..+.. ..+....+.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~-~~~~~~~~~~~~---- 291 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGIL-MGLVVLLMALQH---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHH-HHHHHHHHHHHh----
Confidence 34445555666778888899999999999999999999999999999999 799988877643 333333333322
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 039312 119 LRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLT 198 (579)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~ 198 (579)
+.+...+..++.|++.+...+...+.+.+..|+ ...+++..+..+...++|..++..
T Consensus 292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-----~~~~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-----LVGAGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-----cccchhHHHHHhHHHHHHHHHHHH
Confidence 344556667778999888887777777664331 112577888888899999999998
Q ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHH
Q 039312 199 GVVYIQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 199 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+.+.+ ...|-+..+++.++..+++..+.
T Consensus 349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 349 LYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 88766 45676666666555444444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=112.93 Aligned_cols=184 Identities=10% Similarity=-0.054 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++...+..++..+..+++..+++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|+ .++++.+.++.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 445566666666677777788899999999999999999999999999999999999999998 6777766665555555
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+.+.+.+.. .+....+.......+- ....+.+.+.++.+++|++.+...+...+++.+..|+ +.+++.++.+
T Consensus 304 ~~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~G~v~g~~ 375 (1140)
T PRK06814 304 FGLDLAFAS-SSVPAEPAQLKSILVF-LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP------AHRARVIAAN 375 (1140)
T ss_pred HHHHHHhcc-cccccccccccchhhh-hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc------ccceeeeHHH
Confidence 444333320 0000000000000000 0001345567777888999999998889999998885 4567788888
Q ss_pred HHHHHHHHHHHHHHHhhhcc-ccchhHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQT-NVSWVLGFAIPTA 218 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~-~~g~~~~f~i~~~ 218 (579)
+...++|..+++++.+.+.. ..++...|++.++
T Consensus 376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88899999999999888863 4456666554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=96.50 Aligned_cols=144 Identities=15% Similarity=0.051 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHH-HHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWS-GSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
++..++..++..++++.+..+++.|+.+ +|++..+.+.+..... .+..++.+++|+++|| +|||+.++++.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 5556666677788888888999999887 9999999998888766 5678899999999999 89999998888777776
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWY 186 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (579)
.....+..+... ++ +.+..+.+.+..+.++.+++.+...+...+++.+.+|+ +.|++.+++++
T Consensus 289 ~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~ 351 (356)
T TIGR00901 289 NAGFVWLASNGH---------HD--GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP------KFGATQMALLS 351 (356)
T ss_pred HHHHHHHHhcCc---------cc--ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC------CccHHHHHHHH
Confidence 655444320000 00 00001345567777888999999999999999999995 45677888766
Q ss_pred HHHH
Q 039312 187 FSFT 190 (579)
Q Consensus 187 ~~~~ 190 (579)
...+
T Consensus 352 ~~~~ 355 (356)
T TIGR00901 352 SLSA 355 (356)
T ss_pred HHHh
Confidence 5443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=90.73 Aligned_cols=147 Identities=10% Similarity=0.005 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGML 108 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~ 108 (579)
+...+..++.....+....+.+.++.+.+|++..+.+.+.....++..++.+++|+++|| +|||+++.++.++..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence 333344444444555556666778888899999999999999999999999999999999 8999999888776554433
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH-
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF- 187 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 187 (579)
.+......+ .+.+.+.++..+.+.+.+...+.....+.|..|+ .+++..+....
T Consensus 276 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~ 330 (377)
T PRK11102 276 WLVVSALLD------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGTL 330 (377)
T ss_pred HHHHHHHHh------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHHH
Confidence 332221000 1233344444444444555555555556665552 23444544322
Q ss_pred HHHHHHHHHHHHHh
Q 039312 188 SFTVALVVVLTGVV 201 (579)
Q Consensus 188 ~~~ig~~i~~~~~~ 201 (579)
...+|..+++.+++
T Consensus 331 ~~~~g~~~g~~~~~ 344 (377)
T PRK11102 331 RFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHh
Confidence 23456666665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-06 Score=85.62 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.-|.+.+---.+++.+|.++.++|.++. +.|+|..++|++.+...+......+.+-.+++|.--+|+..+.....+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34566666667789999999999999976 56999999999999999999999999999999856678888888888888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
|.+.+.+... ... +...+++|+|.|+..|....++.+-.++ +++ .++.-+.-
T Consensus 287 G~~G~~~~P~--------------------~~~---~lw~~llG~G~G~~F~laL~li~~rs~~--a~~---Aa~LSgma 338 (395)
T COG2807 287 GLVGLLLAPG--------------------QLP---ILWALLLGLGQGGAFPLALTLILLRSSD--AAI---AAALSGMA 338 (395)
T ss_pred HHHHHHHhhh--------------------hHH---HHHHHHHhCccchHHHHHHHHHHhhcCC--hHH---HHHHHHHh
Confidence 8887776541 122 2224789999999999999999998775 333 34444444
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNV-SWVLGFAIPTAC 219 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~-g~~~~f~i~~~~ 219 (579)
+-...+=+++||.+.|++.|.. +|+...+.-+..
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 4455677889999999998865 488766554433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=99.70 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh--HHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF--RTLLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~--~~l~~~~~~~ 103 (579)
+..+...+...+..++++.-..+++.|.. ..+++..++..++++......++.++.|+++|+ ...+ .+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence 34455556667777787777778888876 899999999999999999999999999999999 5633 3344455555
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++...+.+.. +++.+...-++.|++.|.+....+..+.|..+. +...++++
T Consensus 376 gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~------~~l~~a~G 427 (509)
T KOG2504|consen 376 GLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL------EKLSNAYG 427 (509)
T ss_pred HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh------hhcchHHH
Confidence 55555555554 667788888899999999988888888998885 44677899
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhcc
Q 039312 184 WWYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGR 231 (579)
Q Consensus 184 ~~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~ 231 (579)
+......++..+||.+.+++.+..| |...|+.+.+..+++...+++..
T Consensus 428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999988877 99999998888777765555443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=98.44 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHH
Q 039312 63 LLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLF 142 (579)
Q Consensus 63 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (579)
..+.+.....+...++.+++++++|| +|+|+.+.++.++..+....+.+.. ..+.+.++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 323 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIP--------------------PSNVWLIF 323 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHHH
Confidence 33445555567777888999999999 8999999888766555443333321 11455667
Q ss_pred HHHHHHHHhccCCccchhhhhhhcCCCCCh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccch
Q 039312 143 AALTLLSIGAGGIRPCNIAFGADQFDTTTE-KGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 143 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
+..++.|++.+...+...++++|..+.++. ++++..+..++.+.+...+|.++|+.+++++.+..|+
T Consensus 324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777889999999999999999998874322 2333446677888889999999999999887665555
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=99.34 Aligned_cols=142 Identities=13% Similarity=0.012 Sum_probs=97.4
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC
Q 039312 55 NNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQ 134 (579)
Q Consensus 55 ~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (579)
..++.+.. .......+....+.+++++++|| +|||+.+.++.++..++.+++.+..+
T Consensus 351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~------------------- 407 (505)
T TIGR00898 351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV------------------- 407 (505)
T ss_pred cccCCChH---HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-------------------
Confidence 34555533 23334456677788899999999 89999999988887777766655430
Q ss_pred chhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHH
Q 039312 135 GWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFA 214 (579)
Q Consensus 135 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~ 214 (579)
. ......+..++.+++.+...+...++.+|.+|+ +.|++++++.+....+|++++|.+.+ +. ..++..+++
T Consensus 408 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~ 478 (505)
T TIGR00898 408 D-LYFLRTALAVLGKFGITSAFQMVYLYTAELYPT------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLV 478 (505)
T ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHHHhcccccH------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHH
Confidence 0 112333444455666666677888889999984 55788899988889999999999988 43 345666777
Q ss_pred HHHHHHHHHHHHHH
Q 039312 215 IPTACLAFSITLFL 228 (579)
Q Consensus 215 i~~~~~~~~~~~~~ 228 (579)
+.++..+++.++.+
T Consensus 479 ~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 479 LFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-06 Score=89.46 Aligned_cols=149 Identities=8% Similarity=-0.072 Sum_probs=101.9
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhh
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAG 115 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~ 115 (579)
.+....++....+.+.|++ ++|++..+.+........+..++.++++++.|| +|+|+.+....+...++...+.+...
T Consensus 213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (401)
T PRK11043 213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASL 290 (401)
T ss_pred HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666777765 589999999988888888888999999999999 89999876666555555444333221
Q ss_pred hcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 039312 116 IHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVV 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i 195 (579)
.+ ..+...+.++..+.+++.+...|...+...+..|+ .++++.++++.....++..
T Consensus 291 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 291 LS-----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFL 346 (401)
T ss_pred hc-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHH
Confidence 10 01234455556677888888888877776676652 3466777777666777788
Q ss_pred HHHHHhhhccccchh
Q 039312 196 VLTGVVYIQTNVSWV 210 (579)
Q Consensus 196 ~~~~~~~l~~~~g~~ 210 (579)
++.+.+.+.+.....
T Consensus 347 ~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 347 ASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHccCCChhH
Confidence 888888776643333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=90.55 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=59.5
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHh
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTA 114 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~ 114 (579)
....+.+.|+++++|++..+.+.+......+..++.++.|++.|| +|||+.++++.++..++.+.+.+..
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788899999999999999999999999999999999 8999999999888888877776654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-07 Score=93.45 Aligned_cols=163 Identities=14% Similarity=0.012 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHh-cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNN-YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
.++...+..++......++..+++.|..+. .+.+...++...+.+..+..++.+++|+++|| +++|+++.++.++..+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence 344444455555555556778888998653 25555556666777778889999999999999 8999998888777777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
..++..+.. +. ....+.++.|++.++++|+..++..+..+++. .+.-...
T Consensus 312 ~~ll~~~~~----------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l 361 (410)
T TIGR00885 312 LCLGSIFAG----------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGL 361 (410)
T ss_pred HHHHHHHcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH
Confidence 766666543 11 23455667888888889999999999888422 1112222
Q ss_pred HHHHHHHHHHHHHHHhhhcccc------chhHHHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNV------SWVLGFAIPTACLA 221 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~------g~~~~f~i~~~~~~ 221 (579)
. +..+|+++.|.+.|++.+.. +.+..|+++..+.+
T Consensus 362 ~-~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 362 V-MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred H-HHHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 2 23499999999999999843 47788888765544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=96.15 Aligned_cols=143 Identities=20% Similarity=0.134 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCc-hhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLG-GVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s-~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
|..+...++..+.++....+++.|+.+.+|++ ..+.+.+.+...+...++.++.|+++|| +|+++.+.+......++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHH
Confidence 33444445555677778889999989999999 7999999999999999999999999999 899888877776666666
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
+.+.+.... .+....++..++.|++.+...+...+++.+.+|+ +.+++..+..+.
T Consensus 288 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~ 342 (352)
T PF07690_consen 288 LGLLLLPFS-------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP------EYRGTAFGLFNS 342 (352)
T ss_dssp HHHCCSHHH-------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT------CHHHHHHHHHHH
T ss_pred HHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHH
Confidence 555543311 1345566677789999999999999999998874 456888999888
Q ss_pred HHHHHHHHHH
Q 039312 188 SFTVALVVVL 197 (579)
Q Consensus 188 ~~~ig~~i~~ 197 (579)
..++|..++|
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=89.36 Aligned_cols=165 Identities=11% Similarity=0.004 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh---HHHHH-HHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF---RTLLV-GSI 101 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~---~~l~~-~~~ 101 (579)
+.+|......++....+|++..+++.|+.+ .|++.. .+.........+. +..++++|| +.|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence 556777788888899999999999999964 678764 4544444444333 445888888 5543 33232 222
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..+....+.... +....++...+.+++.....+...++.+|.+|+ +.|+++
T Consensus 266 ~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~rgt~ 317 (368)
T TIGR00903 266 LIAAFFLALAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK------ELHGKA 317 (368)
T ss_pred HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch------hhcCcc
Confidence 2222222222221 122233444556676777777788899999994 557889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHH
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITL 226 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 226 (579)
.++.+...++|+..+|.+.+.+.. |....|.+-+...+++.+.
T Consensus 318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887763 5555565555544444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=92.28 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChh-------HHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRF-------RTLLV 98 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~-------~~l~~ 98 (579)
+.+|.+.+..+++..+++.+..++|.|+.+.+|++..+.|+..+.-.+...+..+++|+++|| +-+| +-+.-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHH
Confidence 467888899999999999999999999999999999999999999999999999999999999 4441 11111
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQG-WQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQ 177 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (579)
+......+..++.+.. .+. + +. .....+.++..+.|+..+++.-+ ..|..| +.
T Consensus 337 ~i~~~~~ai~l~~l~~-~~~------------~--~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-------q~ 390 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAF-TSD------------E--HRLLAVILLTIAIGLSGFNISGFYKN----HQDIAP-------QH 390 (466)
T ss_pred hHHHHHHHHHHHeeee-cCC------------C--cchHHHHHHHHHHHHcccchhhhHhh----hhhccc-------hH
Confidence 1111222222222211 110 0 11 12222333333333333333222 122222 33
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccc---cchhHHHHHHHHHHHHHHHHHHhc
Q 039312 178 LESFFNWWYFSFTVALVVVLTGVVYIQTN---VSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 178 r~~~~~~~~~~~~ig~~i~~~~~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
.+-.++..+...++.+.++|.+.+.+..+ -.|+..|++.++..+++.+++.+.
T Consensus 391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 46678888888999999999999998843 369999999998888776665544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=94.80 Aligned_cols=165 Identities=15% Similarity=0.038 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++..++..++.....+....+.+.|++ ...-+....+.+.....++..++.++.++++|| +|+|++++++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIGDADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 55566666677766666655555554443 333355566666666668888999999999999 8999999988877776
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCC-hhhhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTT-EKGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~ 184 (579)
+.+.+.+....+ ..+...+++.-++.|++.+...+...++++|..+..+ +.+++..+..++.
T Consensus 309 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~ 371 (473)
T PRK10429 309 SCGVLLLMGLAA-----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV 371 (473)
T ss_pred HHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence 665554321000 1134556666677889999999999999999876422 2223334667788
Q ss_pred HHHHHHHHHHHHHHHHhhhccccch
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~ 209 (579)
..+...+|.++++.+.|++.+..|+
T Consensus 372 ~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 372 QTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999998887654444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.3e-07 Score=92.58 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
.+...+..++.....+++..+++.|+++.+|++..+++.+...+.++..++.+++|+++|| +|||+.+..+..+...+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence 4445555555556667788889999999999999999999999999999999999999999 899988887776666665
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.++.+... ...+...+++..++.+++.|...+...+++++.+| +.+++.++....
T Consensus 306 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~g~~~g~~~~ 360 (366)
T TIGR00886 306 FLVVLGLV------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-------RATGAVSGLVGA 360 (366)
T ss_pred HHHHhcCC------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-------hhcccHHHHHHH
Confidence 55544320 00023344455555566666666666777777776 235666776555
Q ss_pred HHHHH
Q 039312 188 SFTVA 192 (579)
Q Consensus 188 ~~~ig 192 (579)
..++|
T Consensus 361 ~~~~g 365 (366)
T TIGR00886 361 IGNLG 365 (366)
T ss_pred hccCC
Confidence 55544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00013 Score=76.84 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=78.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCccc
Q 039312 370 WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDS-F--VSPMS 446 (579)
Q Consensus 370 ~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~ 446 (579)
.+..+..++.-++....+.....+.||..+ ..+...+.+|.++..+..++.-+.... +-...+.+ + ...-.
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p~--dap~~~t~~~~~~~~~~ 352 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFPN--DAPLRPTDSPPLLFTPS 352 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhccccc--cCCCCCCcccccccccc
Confidence 344444444444444444444444444322 456677777777766665554432200 00000100 0 00111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039312 447 LLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 447 ~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~ 507 (579)
.....+..++.|+++..+....+.++....|++ |..+.+++-+..++++.++....+...
T Consensus 353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 353 YYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-RAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 334566778999999999999999999999644 889999999999999888777666543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-06 Score=87.84 Aligned_cols=190 Identities=15% Similarity=0.059 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.+...+.+.++..++......+....+..+-|++..++.+++........++.+++.++-|| +|||+.++.+..+..+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence 455566666677666665555555666677889999999999999999999999999999999 8999999999998888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc-CCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAG-GIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
..+++.....+.... +.+-....+++.++..++.+ +..|...-+.+|.+|..+ |..++++
T Consensus 348 ~~~~~~~~~~l~~~~-------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~ 408 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSF-------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSV 408 (485)
T ss_pred HHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHH
Confidence 887776654222100 00111112333333332222 345777888999999533 4455555
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeee
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIY 236 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 236 (579)
-.....+...+-......+.+.+|- ..|++.++..++..+..+...|+.+.
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 4434444444444444445555554 34444444445555555555666544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-06 Score=79.66 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=95.0
Q ss_pred HHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 039312 50 TVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPH 129 (579)
Q Consensus 50 ~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (579)
..|+.+++|+...|.+.+..+......+.-.+.|-++|+ .|||+. ++.+++.++++.+....|
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKra----cvtycitYiLsCiTKhSp------------ 122 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRA----CVTYCITYILSCITKHSP------------ 122 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccc----eeeehHHHHHHHHhhcCC------------
Confidence 356677899999999998888888888888999999999 899994 566777777777765323
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCccchhh-hhhhcCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHHHHHhhhccc-
Q 039312 130 CPQPQGWQFCVLFAALTLLSIGAGGIRPCNIA-FGADQFDTTTEKGRAQLESFFNW-WYFSFTVALVVVLTGVVYIQTN- 206 (579)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~i~~~~~~~l~~~- 206 (579)
++-.+.++|++-|+.+.....+--+ +++|.-++.+- +.+-...-|+- ..+...+-+.++.+.+-.+.++
T Consensus 123 -------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 123 -------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred -------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 4556899999999998876655443 34444321110 00111111111 1122333334444444444443
Q ss_pred -cchhHHHHHHHHHHHHHHHHH
Q 039312 207 -VSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 207 -~g~~~~f~i~~~~~~~~~~~~ 227 (579)
.|...+|-..++...++..+.
T Consensus 195 slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 195 SLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred ccCCCCchHHHHHHHHHHHHHH
Confidence 356678876666655554444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=85.77 Aligned_cols=145 Identities=13% Similarity=0.010 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhc--CC----chhHH-------------HHHHHHHHHHHHHhhhhhHHHhh
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNY--NL----GGVLL-------------VNIVTIWSGSNNITSLLGAFVSD 87 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l--~~----s~~~~-------------~~i~~~~~~~~~~~~~~~G~laD 87 (579)
.-+.+..+-+.++++|||++-......+... |. .+.+. -.-....+++-+-+.++.|++-|
T Consensus 327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive 406 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE 406 (528)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence 3445667778899999998877666654322 11 11111 11133445667778899999999
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcC
Q 039312 88 AYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQF 167 (579)
Q Consensus 88 r~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 167 (579)
| +|||+++..+.+++++..+++.... ..+. -..+++.+|+....+ ..+.+++..|.|
T Consensus 407 r-lGRKkTMal~l~~f~iflfll~~c~-----------------~rn~-~tvllf~arafisg~----fqvaYvYtPEVy 463 (528)
T KOG0253|consen 407 R-LGRKKTMALSLILFGIFLFLLTTCK-----------------TRNA-YTVLLFTARAFISGA----FQVAYVYTPEVY 463 (528)
T ss_pred H-hcchhHHHHHHHHHHHHHHHHHHhc-----------------Ccch-hHHHHHHHHHHHhch----heEEEEecCccc
Confidence 9 8999999998888888777666543 1111 234566777665433 345578889999
Q ss_pred CCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039312 168 DTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV 200 (579)
Q Consensus 168 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~ 200 (579)
|+ +.|+.+.+....+..+|+++.|.++
T Consensus 464 PT------avRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 464 PT------AVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ch------hhhhcchhhhhhHHhhhhhhhhHHH
Confidence 95 6678888888888999999999998
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-06 Score=86.60 Aligned_cols=178 Identities=7% Similarity=0.091 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhc---CCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNY---NLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l---~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
|.+|...+........|+..-.-.+.|++..+ +.++...|.+.+.-...-++.-.+..++-+| +|.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 45555444444433444444344667776543 3455667888888888888889999999999 8999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 103 SLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
..+=...+++++ +.+.+.+...+.++-.+..-....-++++.+|+ +..++.+
T Consensus 299 ~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~------rlsAt~y 350 (412)
T PF01306_consen 299 MAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK------RLSATLY 350 (412)
T ss_dssp HHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHH
T ss_pred HHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hHHHHHH
Confidence 888888888877 677899999999999999999999999999994 3345667
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 039312 183 NW-WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRR 232 (579)
Q Consensus 183 ~~-~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 232 (579)
.+ ++.+..+|.++.+.++|++-++.|++..|++.+...+...++..+..+
T Consensus 351 ~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 351 LVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 66 466789999999999999999999999998877665555444444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-05 Score=77.46 Aligned_cols=159 Identities=9% Similarity=0.073 Sum_probs=104.0
Q ss_pred HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 039312 48 NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDP 127 (579)
Q Consensus 48 ~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (579)
...+.+++.+|+|..|...+-....++..++ ++.|.+.|+ +|.+.++.+|.+...+|+.+++++.. ..
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~-~~--------- 90 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS-GR--------- 90 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh-Cc---------
Confidence 3446778899999999999999999998875 888999999 89999999999999999999887651 11
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039312 128 PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNV 207 (579)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~ 207 (579)
......+.+.+...+.+.+.+.+.........+.||+ .|+.+.++.-....+++++-..+...+.+.-
T Consensus 91 -----i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-------~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 91 -----IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-------SRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred -----cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-------ccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 1112455555555566666666666666666788983 2456666644444555554444433333322
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 039312 208 SWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 208 g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
.-...+.......+++++..++.
T Consensus 159 ~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 159 PSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhe
Confidence 22333333333344444444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-05 Score=82.11 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 039312 46 ISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG 125 (579)
Q Consensus 46 ~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (579)
....+.|+++.+|++..+.++.......+..++.++.+++.|| +|++... +.....++.+.+.... ..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~-~~-------- 294 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPG-WF-------- 294 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHH-Hh--------
Confidence 3455667787799999999998888888888888999999999 6743322 2222222222222111 00
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 126 DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
...+.+.+.++..+.++|.+...|...+...|.+|+ .++...+..+...++|.++++.+++++..
T Consensus 295 --------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 295 --------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 001334566677888999998888888888887762 23556677777789999999999988876
Q ss_pred ccchhHH
Q 039312 206 NVSWVLG 212 (579)
Q Consensus 206 ~~g~~~~ 212 (579)
...+...
T Consensus 360 ~~~~~~~ 366 (394)
T PRK11652 360 TGQFSLG 366 (394)
T ss_pred CchHHHH
Confidence 5444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-05 Score=81.14 Aligned_cols=177 Identities=9% Similarity=0.015 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGM 107 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~ 107 (579)
++..++..++...+.-....+...|+++.-|.+....+.+.+...++=...-.+.+++-.| +|.+++++++++...+=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 3334444455555555556788889876544777778877777777777888899999999 899999999998888877
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH
Q 039312 108 LMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF 187 (579)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (579)
.+.+...+ | ..........+-+++|+..|.+..+...++.+..|+ +.|+++.+++..
T Consensus 288 ~l~a~~~~-~----------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~------~~~at~Q~l~~~ 344 (400)
T PF03825_consen 288 LLYAYFSD-P----------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP------ELRATAQGLYSA 344 (400)
T ss_pred HHHHHhcC-C----------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHHH
Confidence 77776520 0 000122233445678999999999999999999995 446677777654
Q ss_pred H-HHHHHHHHHHHHhhhccccchh------HHHHHHHHHHHHHHHHHH
Q 039312 188 S-FTVALVVVLTGVVYIQTNVSWV------LGFAIPTACLAFSITLFL 228 (579)
Q Consensus 188 ~-~~ig~~i~~~~~~~l~~~~g~~------~~f~i~~~~~~~~~~~~~ 228 (579)
. ..+|.++|..++|++.+.+|-+ ..+.++++..++..++++
T Consensus 345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV 392 (400)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 5799999999999998876644 344445544444434333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=85.04 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGML 108 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~ 108 (579)
...++..++...+..-....+..|.+-.+|.+.......+.....+..++.++...+++| +|+|+++.++.++.+++.+
T Consensus 239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~ 317 (467)
T COG2211 239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYL 317 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHH
Confidence 333334444444444334455556666788888888888888888888889999999999 8999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChh-hhhhhhhhHHHHHH
Q 039312 109 MMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEK-GRAQLESFFNWWYF 187 (579)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 187 (579)
++.+.. ..+..++++..++.++|.+...+...++++|.-+-++-+ +.+.-+-.++...+
T Consensus 318 ~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF 377 (467)
T COG2211 318 LLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF 377 (467)
T ss_pred HHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence 988865 226778888889999999999999999999976632211 11222445555666
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 039312 188 SFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 188 ~~~ig~~i~~~~~~~l~~ 205 (579)
..-+|.+++..+.+++..
T Consensus 378 ~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 378 FRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777776666543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=89.04 Aligned_cols=116 Identities=15% Similarity=0.243 Sum_probs=98.0
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSL 447 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
.+.++..-.+..+++.|+++++. .|+ ++...+.+|.++..++.+..++.. +.
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLa----dry-------NR~~v~~vG~~iW~~Av~~~~fs~-----------------~F 121 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLA----DRY-------NRKRVIAVGIFIWTLAVFASGFSN-----------------HF 121 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH----hhc-------CcceEEeeHHHHHHHHHHHHHHHH-----------------HH
Confidence 34667777777888899998884 443 344789999999999998888875 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
|.+.+.=.+.|+||....|...+++++.+|...|++..++++++..+|+.+|..+...+...+.
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 7777788899999999999999999999999999999999999999999999888877776653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0012 Score=68.42 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=97.2
Q ss_pred HHHHHHhHHh-cCCchhHHHH-HHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 039312 47 SNITVYLQNN-YNLGGVLLVN-IVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSC 124 (579)
Q Consensus 47 ~~~~~y~~~~-l~~s~~~~~~-i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (579)
+++..|+.+. .|++..|... +.-+..-......++...++|. +|.|++++++.+...+...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 6888999887 8999998864 4444455566677889999999 8999999999988888887777766
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 125 GDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ 204 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~ 204 (579)
+...+-+.-+..|++.+ +-.++-+..+...+++.- +| ..++...+.-+|-.++.+++=.+.
T Consensus 93 ------------sv~~mq~~q~~yg~~~a----~evay~sYiys~v~~~~y-q~--vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 ------------SVLAMQLMQFFYGLATA----AEVAYYSYIYSVVDKEHY-QK--VTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred ------------cHHHHHHHHHHHHHHHH----HHHHHHHHheeecCHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444 445666666665544432 22 233333344444444444433332
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 205 --TNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 205 --~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
+..++....++......++++..++.
T Consensus 154 s~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 154 SFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 23457777777777666665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-05 Score=81.27 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHH
Q 039312 31 ILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMM 110 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~ 110 (579)
++...++..+...........|.+-.+|. ....+.+...+.++..++.+++++++|| +|+|+++..+..+..+..++.
T Consensus 233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~ 310 (460)
T PRK11462 233 VGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAM 310 (460)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHH
Confidence 33333344333333233333333333443 3344566777778888999999999999 899988776555444433333
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChh-hhhhhhhhHHHHHHHH
Q 039312 111 TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEK-GRAQLESFFNWWYFSF 189 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 189 (579)
.+.. ..+...+++..++.|++.+...+...++++|..+..+-+ +++.-+..++...+..
T Consensus 311 ~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~ 370 (460)
T PRK11462 311 FFVP--------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL 370 (460)
T ss_pred HHhc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence 3221 012223344445567777777777788888876632211 1222244456666778
Q ss_pred HHHHHHHHHHHhhhccccch
Q 039312 190 TVALVVVLTGVVYIQTNVSW 209 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~ 209 (579)
.+|.++++.+++++....|+
T Consensus 371 Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 371 KLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 88888888887776543333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-05 Score=79.82 Aligned_cols=168 Identities=12% Similarity=0.032 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++...+..++....+++...+.|.++++.+|++..+.++.......+..++..+.+.+.++ .++++.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence 345555555566666777777778889998999999999999887778888877777776554 3444544433444444
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+..++....... ...+...+++..+.++|.+...|+.....-.+... + +++..+.+
T Consensus 297 g~~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~--~-----~G~a~a~~ 352 (413)
T PRK15403 297 GLALLIVGNLLW-----------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNL--P-----KGTVSASL 352 (413)
T ss_pred HHHHHHHHHHHc-----------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCC--C-----CcHHHHHH
Confidence 544443321000 01233356777788899888888877533222221 1 23344444
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTAC 219 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~ 219 (579)
......+...++...+++..+ +-.++|....+.
T Consensus 353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 445556667777777777554 445566554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-05 Score=82.80 Aligned_cols=184 Identities=7% Similarity=-0.025 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchh----HHHHHHHHHHHHHHHhhhhhH----HHhhcccChhHHH--HH
Q 039312 29 KYILGNETFEKLASMSLISNITVYLQNNYNLGGV----LLVNIVTIWSGSNNITSLLGA----FVSDAYLGRFRTL--LV 98 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~----~~~~i~~~~~~~~~~~~~~~G----~laDr~~Gr~~~l--~~ 98 (579)
..+++...+....+......++.|..+..+.+.. ..+++.+.-.+...+..++.. ++.||..+.+... .+
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 3344444555566666667777887665444321 145555555555555555533 4555422333333 67
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQL 178 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (579)
|+++..++...+.+...... .....+.+++++..++.++|+....|...+++.+..|+ +.|
T Consensus 355 G~~l~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------~~~ 415 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWFAD-------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------RLM 415 (475)
T ss_pred HHHHHHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH------HHH
Confidence 88888888877765421100 01124778899999999999999999999999999984 567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Q 039312 179 ESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGR 231 (579)
Q Consensus 179 ~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 231 (579)
++.++.+..+..+|..+++.+........+|...|...++..++...++++..
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999899999999988887766656777777666655554444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-05 Score=66.29 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHH
Q 039312 376 MLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYA 455 (579)
Q Consensus 376 ~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (579)
.++.++..++.+++. +|. ++++.+..+..+..++.+...... +.+.+....+
T Consensus 8 ~~~~~~~~~~~g~~~----d~~-------g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 59 (141)
T TIGR00880 8 ALGQLIYSPLSGLLT----DRF-------GRKPVLLVGLFIFVLSTAMFALSS-----------------NITVLIIARF 59 (141)
T ss_pred hhHHHHHHhhHHHHH----hhc-------chhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHH
Confidence 344556666666553 332 222455566666666655544432 4455666778
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039312 456 LSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 456 l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+.+++.....+....+..|..|++.|++..++.+....+|..+++.+.+.+.+.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 889999999999999999999999999999999999999999999999887654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=84.83 Aligned_cols=160 Identities=14% Similarity=0.007 Sum_probs=116.6
Q ss_pred hHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccC--hhHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039312 45 LISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLG--RFRTLLVGSIASLLGMLMMTLTAGIHQLRPS 122 (579)
Q Consensus 45 ~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (579)
+-..++.++.+.+.-+..+.|....-..+.+.++..+-|.++|| ++ |......++++..+......++.
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G~~~~~iP~~~-------- 359 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVGVSSGPIPFAT-------- 359 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHHHHhchhHhhh--------
Confidence 44677888888888666689998888899999999999999999 79 53333333333332222222332
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039312 123 SCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVY 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~ 202 (579)
++..+.+-+...+++.+...++..+..+...+.+..++-+.-++.+++...+..+|.++||.++|.
T Consensus 360 --------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~ 425 (464)
T KOG3764|consen 360 --------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS 425 (464)
T ss_pred --------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch
Confidence 566677777778888888888888888887775433333366788888888999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHH
Q 039312 203 IQTNVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 203 l~~~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
+.+.+|++|.-.+.+...++..-++
T Consensus 426 iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 426 LVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred heeehhHHHHHHHHHHHHHHHHHHH
Confidence 9999999987766665544443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-05 Score=75.20 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|.++...+..++--..=-.+..+++.|+.+..|++..++...++.+..+..++.+++-++-.| +...|.+.+..+...+
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 334444444444444444556789999998899999999999999999999999999999999 8999998777655555
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
-.+...+.. +. .-+.+.++.|+..+.++|++.++..+..++.+.. ++..
T Consensus 315 l~~~~~l~~----------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~-----~s~~--- 363 (422)
T COG0738 315 LLLAVALIG----------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHTSV-----GSGL--- 363 (422)
T ss_pred HHHHHHHhc----------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccccc-----ccee---
Confidence 444444443 22 2344556789999999999999999998843321 1222
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHH
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFA 214 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~ 214 (579)
-.+..+|+++-|.+.|++.+..|-...+.
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 22456899999999999999988776665
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=71.89 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=104.4
Q ss_pred HHhHHhcCCch--hHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 039312 51 VYLQNNYNLGG--VLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPP 128 (579)
Q Consensus 51 ~y~~~~l~~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (579)
......++.+. ...+++.+.+.....++.++.|.++|| +|||+.++.+.....++.+.+.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~------------- 91 (338)
T COG0477 26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN------------- 91 (338)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-------------
Confidence 33344555555 478999999999999999999999999 69998888887665555555555441
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHH-HHHHHHHHHHHHHhhhccc-
Q 039312 129 HCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYF-SFTVALVVVLTGVVYIQTN- 206 (579)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~i~~~~~~~l~~~- 206 (579)
.....+.+.|...|++.+...+...+++.|.+++ . ..+....+.... ...+|..+++.+++.+...
T Consensus 92 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
T COG0477 92 -------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159 (338)
T ss_pred -------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467788899999999999999999999999884 1 345666666655 4677888888666655443
Q ss_pred -cchhHHHHHHHHH
Q 039312 207 -VSWVLGFAIPTAC 219 (579)
Q Consensus 207 -~g~~~~f~i~~~~ 219 (579)
.+|+..|.+....
T Consensus 160 ~~~~~~~~~~~~~~ 173 (338)
T COG0477 160 LWGWRAAFLLAALL 173 (338)
T ss_pred hcchHHHHHHHHHH
Confidence 5788866555443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.7e-05 Score=76.86 Aligned_cols=163 Identities=17% Similarity=0.112 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcc---cChhHHHHHH-HH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAY---LGRFRTLLVG-SI 101 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~l~~~-~~ 101 (579)
+.+..+..+.+...+++-.=..++++|++ .+|.+....+.+-.+.-+.+.+.+++.|..+||+ |||||-++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44444445555555555544567888865 7899999999998888899999999999999975 7988887755 44
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC----chhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQ----GWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQ 177 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (579)
...++..+...+.++... +|+... +.....++++.-+.=++.-..+...-++.+|...+++.++
T Consensus 111 ~i~~~l~Lig~aaDig~~---------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~--- 178 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL---------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT--- 178 (498)
T ss_pred HHHHHHhhhhhHhhhhHH---------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---
Confidence 455566666666533321 233322 2566777888777778877777788999999988644222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039312 178 LESFFNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 178 r~~~~~~~~~~~~ig~~i~~~~~~~l 203 (579)
| +.+++.....+|..+|...+++.
T Consensus 179 ~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 179 R--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred c--cchhHHHHHHhcceeeeeccccc
Confidence 2 67777778899999998888754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=72.22 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=126.1
Q ss_pred HHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 38 EKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIH 117 (579)
Q Consensus 38 ~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (579)
..++++.==..+=+|--+.||++..+...++..+..+..++..+.|++..|..|++++-.+++.+..++..+..++...
T Consensus 220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~- 298 (403)
T PF03209_consen 220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL- 298 (403)
T ss_pred HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3344433334555777888999999999999999999999999999998866899999999999999988887777611
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039312 118 QLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVL 197 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~ 197 (579)
.+.+.+..+.+++|+|.|.+.....+.+-|...+++ .+.+++.+-.+..++..++.
T Consensus 299 ------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 299 ------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred ------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHH
Confidence 146789999999999999999888888888877432 34667777777777777777
Q ss_pred HHHhhhcc----------ccchhHHHHHHHHHHHHHHHHH
Q 039312 198 TGVVYIQT----------NVSWVLGFAIPTACLAFSITLF 227 (579)
Q Consensus 198 ~~~~~l~~----------~~g~~~~f~i~~~~~~~~~~~~ 227 (579)
.+++.+.| ..+|...|.+-++.+++++.+.
T Consensus 355 ~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 355 FLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 77665432 2457778888777766665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=60.03 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 31 ILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+-...++...+...+.++++.|+.+ .|+|..+.|.+.++......+++++.|+++|| +||++.++....+
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 3445555556666678899999874 89999999999999999999999999999999 7998887765543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.036 Score=59.30 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=98.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCc-----hhHHHHHHHHHHHHHHHh-hhhhHHHhhcccChhHHHHH
Q 039312 25 WRAIKYILGNETFEKLASMSLISNITVYLQNNYNLG-----GVLLVNIVTIWSGSNNIT-SLLGAFVSDAYLGRFRTLLV 98 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s-----~~~~~~i~~~~~~~~~~~-~~~~G~laDr~~Gr~~~l~~ 98 (579)
++.++...+.-++..+.|+.+ --+.+.+..+ .....++.+...+...+. .++-+++++| ++|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 456666666666666666533 3346666653 345666666655554444 7889999999 899999888
Q ss_pred HHHHHHHHHHHHHHHhhhcc--cCCCCC-CC------CCCCCC----CCchhHHHHHHHHHHHHHhccCCcc-chhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQ--LRPSSC-GD------PPHCPQ----PQGWQFCVLFAALTLLSIGAGGIRP-CNIAFGA 164 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~------~~~~~~----~~~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~ 164 (579)
....+.+-..++++.. .|. ...|+- .| +..... ...|....+++..=+.|. .... .-+.++.
T Consensus 80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~---~vvS~lFW~fan 155 (472)
T TIGR00769 80 VISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGS---VVLSLLFWGFAN 155 (472)
T ss_pred HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 7766666666655543 221 111110 00 000000 012333344444333322 2222 5578899
Q ss_pred hcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 039312 165 DQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQ 204 (579)
Q Consensus 165 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~ 204 (579)
|.+.. ++..+.|+++..+.|+|..+++.+..++.
T Consensus 156 di~t~------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 156 QITTI------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred hcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99884 44567899999999999999999888765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.023 Score=59.14 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~ 507 (579)
++|.+++..+..|+..+..+...+..+.+..|++.|..++|+.....++|-.++..+.-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666677888899999999999999999999999999999999999999988887765443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=69.29 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH
Q 039312 408 QRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA 487 (579)
Q Consensus 408 ~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi 487 (579)
+.+..+++...+..++.++.. +.+.+.+.-++.|++|+... +...+++..+|++.|++++|+
T Consensus 93 ~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi 154 (511)
T TIGR00806 93 PVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY 154 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence 677778887777777777664 56778888899999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039312 488 FFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 488 ~~~~~~ig~~l~~~l~~~v~ 507 (579)
+.....+|.++++.+.+++.
T Consensus 155 ~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 155 SRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.3e-05 Score=75.31 Aligned_cols=114 Identities=9% Similarity=0.093 Sum_probs=94.0
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 039312 366 MPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPM 445 (579)
Q Consensus 366 ~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
...+.++....+.-.+..|.++.+.|++.|| ..+.+|++..+++.+.++...
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----------pvll~c~~~va~s~ll~~~S~----------------- 119 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRK-----------PVLLACLIGVALSYLLWALSR----------------- 119 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCch-----------HHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 3456777778888889999999997766665 788999999999988888765
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+...++..=++.|+..+-+++ .-++++|.++++.|+.+++......++|-++||++++++..
T Consensus 120 ~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 333445556778888877755 68899999999999999999999999999999999998876
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00076 Score=73.44 Aligned_cols=117 Identities=16% Similarity=0.069 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhhhh----HHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHH
Q 039312 65 VNIVTIWSGSNNITSLLG----AFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCV 140 (579)
Q Consensus 65 ~~i~~~~~~~~~~~~~~~----G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (579)
+++.+.-.+...+..++. +++.|| ++..+.+.+|.++..++++.+......+. ....-+.++
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~-------------~~~~vs~~~ 384 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFAN-------------DAGIVSVNW 384 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCccCHHH
Confidence 344444443444444444 666777 67778888999999999988877652211 001124557
Q ss_pred HHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039312 141 LFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV 201 (579)
Q Consensus 141 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~ 201 (579)
+....+++++|++...|...+++.+..|+ +.|++.++.+.++..+|..++..+..
T Consensus 385 ~~~~~~l~~~ge~~~~p~g~s~~~~~aP~------~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 385 LIASYGLQSIGELMISGLGLAMVAQLVPQ------RLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999883 66788899888777777777766654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00044 Score=74.96 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHH
Q 039312 374 TSMLALSLWILIYERLYIP-VATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLP 452 (579)
Q Consensus 374 i~~~~~ii~~~l~~~~~~~-~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 452 (579)
.......+..++.+++.|+ +.+| +.+..|.++.+++.+.+++.. .....+..
T Consensus 58 ~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~----------------~~~~ll~~ 110 (489)
T PRK10207 58 AFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL----------------LKPDLIFI 110 (489)
T ss_pred HHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc----------------cchhHHHH
Confidence 3333444455666666554 3333 778888888888877766543 11222445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 453 QYALSGLTEAFAAVAIMEFFTNQMPES--MRTVAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 453 ~~~l~~~~~~~~~p~~~~~~~~~~P~~--~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
..++.+++.++..|....++.+++|++ .|+.+.+++.+..++|..+++.+.+++.+..
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~ 170 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF 170 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677889999999999999999999876 4577899999999999999999999987654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00061 Score=73.02 Aligned_cols=205 Identities=13% Similarity=-0.037 Sum_probs=135.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHh-cCCchh------H----HHHHHHHHHHHHHHhhhhhHHHhhccc
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNN-YNLGGV------L----LVNIVTIWSGSNNITSLLGAFVSDAYL 90 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-l~~s~~------~----~~~i~~~~~~~~~~~~~~~G~laDr~~ 90 (579)
++.|+.++.+..++++.-++++....+.+.|+.++ +|-++. + ..+....+++.+.+..++--++.++ +
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~ 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-W 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 45678999999999999999999999999998753 443211 1 2334444555556667777888999 8
Q ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCC
Q 039312 91 GR-FRTLLVGSIASLLGMLMMTLTAGIHQ-LRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFD 168 (579)
Q Consensus 91 Gr-~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 168 (579)
|+ |++..++.++..++.....+..+.+. .++....+... .+.....+..++...+.|+..+.......+++++..+
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL--PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 85 67778888888888777765542110 00000000000 0111123556677778999999999999999999888
Q ss_pred CCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHHHHHHHHhccce
Q 039312 169 TTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVS--WVLGFAIPTACLAFSITLFLLGRRC 233 (579)
Q Consensus 169 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~~~~~~~~~~ 233 (579)
+++ ++.+..++.++.++.+...+..+..|.+.+..| -...+.+.++.++++.+..++..|+
T Consensus 411 ~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 411 NLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 422 334777888888888888888776666443333 4567777777777776666666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.9e-05 Score=77.74 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHH--------HHHHHHHHHHH-hhhhhHHHhhcccChhHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVN--------IVTIWSGSNNI-TSLLGAFVSDAYLGRFRTL 96 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~--------i~~~~~~~~~~-~~~~~G~laDr~~Gr~~~l 96 (579)
+.++......+..-.++|+...+...-++ .+|+.+.+... ...+...++.+ +..++.++.|+ +|||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 34455556667778888988777766554 45554443222 23333334444 55677778999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhH-HHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhh
Q 039312 97 LVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQF-CVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGR 175 (579)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 175 (579)
+.+.+++.+....++...+-+ .+.... ..+.+.. -++.-+...+.-..-+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~~---------------~~~~Gf~v~y~l~~---ff~NFGPn~ttfivpaE~FPa------ 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQL---------------ENTIGFVVLYSLTF---FFGNFGPNATTFIVPAEIFPA------ 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCcccc---------------cccCceeehHHHHH---HHHhcCCCceeEEeehhhchH------
Confidence 999888887776666543100 011111 1222222 233334444445556799994
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----ccchhHHHHHHHHHHHHHHHHHHh
Q 039312 176 AQLESFFNWWYFSFTVALVVVLTGVVYIQT-----NVSWVLGFAIPTACLAFSITLFLL 229 (579)
Q Consensus 176 ~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~-----~~g~~~~f~i~~~~~~~~~~~~~~ 229 (579)
+.|+.+.++.....-+|+.++.....++.+ ..|.+..|++.+....++.+..++
T Consensus 438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 678899999888889999999999999888 778899999888777766555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.3e-05 Score=80.22 Aligned_cols=136 Identities=8% Similarity=-0.183 Sum_probs=102.5
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 039312 54 QNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQP 133 (579)
Q Consensus 54 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (579)
.+.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++..++.....+...-+....
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------ 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence 45789999999999999999999999999999999 89999999998888887755432110000000
Q ss_pred CchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 039312 134 QGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVS 208 (579)
Q Consensus 134 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g 208 (579)
...+.+.+...-++.+++.+........++.+..|+ +..++.++++....++|..+++.+++++.+..|
T Consensus 347 gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS------GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000122344555677788787777888999998885 345778999888899999999999998887666
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.6e-07 Score=97.99 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+...+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.|| +|||++++++..+..+.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccc
Confidence 444445555555555544455555566666777766 233334445566777888899999 89999999988887777
Q ss_pred HHHHH-HHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 107 MLMMT-LTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
.+.+. ... +.... +...+...+....+.......+..+....+.+|.||+ +.|.++.++.
T Consensus 330 ~~~~~~~~~--~~~~~-----------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt------~~R~~~~~~~ 390 (451)
T PF00083_consen 330 SLILGIIFF--LGVSS-----------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT------KVRSTGIGLS 390 (451)
T ss_pred ccccccccc--ccccc-----------ccccccccceeeeeccccccccccccccccccccccc------cccccccccc
Confidence 66664 111 00000 0000121111111111222224456666888999995 4567788887
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcccee
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCY 234 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~ 234 (579)
+....+++++++.+...+.+..+-...|++.+...++..+..++..|+.
T Consensus 391 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 391 YAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 7777888888888877777666523344444444444444444444543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0014 Score=71.57 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=87.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIAS 103 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~ 103 (579)
.++.......+..+..++.+....+....+.+..|.+... ............++..++.++.|| +|||+.++.+...+
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~m 369 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAGM 369 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHHH
Confidence 4455665666666666665544444445555666776443 555555667777888888999999 89999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHH
Q 039312 104 LLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFN 183 (579)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (579)
.++.++++........... + ........+....+.......+..|....+..|.||. +.|+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~------~~r~~~~s 434 (513)
T KOG0254|consen 370 SICLVILAVVGVFALYYPN-------S--SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL------RLRSKGAS 434 (513)
T ss_pred HHHHHHHHHHHHHhccCCC-------c--ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH------hHHhhhHH
Confidence 9999888876532211000 0 0011222222222233333444556667788999994 34455555
Q ss_pred H
Q 039312 184 W 184 (579)
Q Consensus 184 ~ 184 (579)
+
T Consensus 435 ~ 435 (513)
T KOG0254|consen 435 L 435 (513)
T ss_pred H
Confidence 4
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.035 Score=56.37 Aligned_cols=159 Identities=16% Similarity=0.041 Sum_probs=89.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhh-----cccChhHH
Q 039312 21 KPGGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSD-----AYLGRFRT 95 (579)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~ 95 (579)
.|+..+++.++++..+.+..= +|+..-+ +++-+.-|.|-.+.+.... ..-=+..=+++..+.| | +||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~~i-P~lL~ak~vSyt~~a~fS~--ay~P~sLKllWaPiVDs~y~k~-~Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIGAI-PLLLQAKGVSYTSQAIFSF--AYWPFSLKLLWAPIVDSVYSKR-FGRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhhhh-HHHhcCCCcchhhhhhhhh--hhhHHHHHHHHHhhhHHHHHHh-hccccc
Confidence 456678899999988887544 5666644 5555566777766654322 2222334467788888 8 899998
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhh
Q 039312 96 LLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGR 175 (579)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 175 (579)
.++=+ -+.+|.++..++...+.....+ ....+...+....+++-+..+--.-++-...-....+
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~g~n---------g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~------ 164 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGLGGN---------GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR------ 164 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCcccccC---------CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH------
Confidence 76532 4556666666655222211111 1111233343344555666665555555554455552
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 039312 176 AQLESFFNWWYFSFTVALVVVLTGV 200 (579)
Q Consensus 176 ~~r~~~~~~~~~~~~ig~~i~~~~~ 200 (579)
++.+=+-+....+.+.|.+++..+.
T Consensus 165 e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 ENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhcCchhHHHHHHHhhhHHhhccee
Confidence 2233344445557788888776653
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0019 Score=69.55 Aligned_cols=111 Identities=10% Similarity=0.015 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHH
Q 039312 374 TSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQ 453 (579)
Q Consensus 374 i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 453 (579)
.......+..++.+++.|++. .+++.+..|.++.+++.++.+... .....+...
T Consensus 53 ~~~~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~----------------~~~~~~~l~ 106 (493)
T PRK15462 53 AYCSLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE----------------IHPSFLYLS 106 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh----------------cchhHHHHH
Confidence 333444555556666655542 122567788888777765544321 011123334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 454 YALSGLTEAFAAVAIMEFFTNQMPES--MRTVAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 454 ~~l~~~~~~~~~p~~~~~~~~~~P~~--~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
..+..++.++..|...+++.+.+|++ .|+.+.+++....++|+.++|.+.+.+.+..
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~ 165 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY 165 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666777777788999999875 7999999999989999999999999886543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00039 Score=74.68 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhc
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDA 88 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr 88 (579)
..+|...+..++.....|+...+++.|+++..|+|..+++.+...+.+++.++.+++|+++||
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 356777888899999999999999999998778999999999999999999999999999999
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.16 Score=53.72 Aligned_cols=64 Identities=23% Similarity=0.185 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 445 MSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 445 ~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
.+...++...++.-+|--..-.....++.|..|++.||...|+.+..+++...+...++-++.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4556667777888888888888888888999999999999999999999988877666544443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=73.69 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 039312 33 GNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTL 112 (579)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~ 112 (579)
+...+..+..--+..++--++ ++++-.+.--|.....-..+-++.-++.++|-.+ +|+-+++.+++....+=++....
T Consensus 378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHH
Confidence 344444455444555554443 4555555555544444445566777889999999 89999999998888877777777
Q ss_pred HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHH-HHH
Q 039312 113 TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFS-FTV 191 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~i 191 (579)
.. |.|..+..-+++|+..+.++.++.+++.+..|+ +.+.++.++.... ..+
T Consensus 456 L~----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp------~l~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 456 LQ----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP------GLRATAQGLLQGIFHGL 507 (618)
T ss_pred hc----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC------cchHHHHHHHHHHhccc
Confidence 66 677788889999999999999999999999995 3344555553332 367
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 192 ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 192 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
|-.+|.+++|.+.+.+|-+..|.+.+++.++.++.+...
T Consensus 508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999998998989988887766665555444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0091 Score=65.37 Aligned_cols=138 Identities=12% Similarity=0.193 Sum_probs=94.3
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSL 447 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
..++...+.+...+..|+++++.|-+.|| ..+..|.++..++.++.+-.+ +.
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~-----------------~~ 131 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ-----------------NM 131 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-----------------cH
Confidence 34677778888888899999998877666 678888888888888777654 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcChH------HH
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSPWL------GA 521 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~w~------~~ 521 (579)
..++...++.+++.+.... ....+.|..|.+.|..+.++.....-+....++.+...+... .+|. ..
T Consensus 132 ~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~WRw~~~~~~i 204 (599)
T PF06609_consen 132 NTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGWRWIFYIFII 204 (599)
T ss_pred HHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCcchHHHHHHH
Confidence 5677788888888666554 456688999999999888777665555555666666554322 1455 33
Q ss_pred HHHHHHHHhhccccccccc
Q 039312 522 VNFVYFSFFASHFVVNTTV 540 (579)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~ 540 (579)
++.+.++....+|+.++++
T Consensus 205 ~~~i~~vl~~~fY~PP~~~ 223 (599)
T PF06609_consen 205 WSGIALVLIFFFYFPPPRA 223 (599)
T ss_pred HHHHHHHHHHHHhCCCchh
Confidence 3444444444456555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.018 Score=63.29 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHH
Q 039312 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVA 484 (579)
Q Consensus 405 ~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~ 484 (579)
++...+.+|.++..++.++.++... .....+.+.+.+..++.++++....+.....+.+.+| +.||.+
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~-----------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a 156 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQ-----------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV 156 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc-----------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence 3447888899999998888777521 0011256677778889999999999999999999998 569999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHh
Q 039312 485 GAAFFLSLSVASYVSSLV-INII 506 (579)
Q Consensus 485 ~gi~~~~~~ig~~l~~~l-~~~v 506 (579)
.|+.....++|+.+.+.+ ..++
T Consensus 157 ~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 157 VAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999754444 4444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0033 Score=65.10 Aligned_cols=186 Identities=16% Similarity=0.060 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
++..+++++....-..+|++...+-.-+ ..-|++...+|.+.....+++.++..++|.++||.-+-|.+.++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555666666666666655553232 345888889999999999999999999999999943344555555555555
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+......+ ...+.++.-..++|++..+..|.-.-+..|..-+..++.+ .++.
T Consensus 345 ~~~~l~~~t~~~------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tS------sGll 400 (480)
T KOG2563|consen 345 GTLMLLTCTLFL------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTS------SGLL 400 (480)
T ss_pred HHHHHHHhhccC------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccc------ceeE
Confidence 542222222111 1223455555677888888888877777776443222221 3333
Q ss_pred HHHHHHHHHHHHHHHhhhccccc----hhHHHHHHHHHHHHHHHHHHhccceeee
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVS----WVLGFAIPTACLAFSITLFLLGRRCYIY 236 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g----~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 236 (579)
....++-+.+-..+.+...+..+ |...-+.......+.+++..+.++++++
T Consensus 401 ~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 401 NLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred EeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 33344444444445555555444 3333333344444555555566666544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.041 Score=59.93 Aligned_cols=168 Identities=8% Similarity=-0.030 Sum_probs=88.1
Q ss_pred HHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHH-HHHHHHH-HHHHHHHHH
Q 039312 36 TFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLL-VGSIASL-LGMLMMTLT 113 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~-~~~~~~~-~~~~~~~~~ 113 (579)
++..++..+.-....-.+...+|-+..+.+.+++++.++..++..++|+++++ .-|+.... ++..+.. +...++...
T Consensus 24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~ 102 (521)
T PRK03612 24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAA 102 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333444455555688899999999999999999999999998755 23332211 1111111 111111111
Q ss_pred hhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 039312 114 AGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVAL 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 193 (579)
.... ......++...++.++..|+..|....+..+... ...++..+..|.+..+|+
T Consensus 103 ~~~~-----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-------~~~g~~~g~ly~~ntlGa 158 (521)
T PRK03612 103 FAFQ-----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-------QHLGHNVATVLAADYLGA 158 (521)
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cchhhhhhhhHhHHhHHH
Confidence 1000 0011222333444566667766665554433211 012334566677788888
Q ss_pred HHHHHHHhhhcc-ccch-hHHHHHHHHHHHHHHHHHH
Q 039312 194 VVVLTGVVYIQT-NVSW-VLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 194 ~i~~~~~~~l~~-~~g~-~~~f~i~~~~~~~~~~~~~ 228 (579)
++|.++.+++.- ..|- +..++++.+..++++++++
T Consensus 159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888888877643 4564 3444444433444433333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=50.44 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHH
Q 039312 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFA 143 (579)
Q Consensus 64 ~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (579)
...-+++......+..+++..+-++ +|.|+.+++|.+.+.+-..... .. +.+.++.
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-~~----------------------~~~~l~~ 94 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF-YP----------------------NSYTLYP 94 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-hh----------------------hHHHHHH
Confidence 3334455556667777888889999 8999999999877765443332 22 4567888
Q ss_pred HHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039312 144 ALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199 (579)
Q Consensus 144 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~ 199 (579)
+-++.|+|.+..+++...++.+..++ +.+++-.+++....+.+..+|..+
T Consensus 95 ~s~l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 95 ASALLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998886553 233444454444445555554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.23 Score=55.68 Aligned_cols=319 Identities=13% Similarity=-0.041 Sum_probs=193.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCch
Q 039312 57 YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGW 136 (579)
Q Consensus 57 l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (579)
.+...........++....++..+.....+|-..|+-.....-.+..++..+...+.. ++. .+...
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a-------------~~~~~ 80 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA-------------IPSSG 80 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc-------------Ccccc
Confidence 3444456677788888889999999999999976666777766666666666665554 221 01112
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-hhH----
Q 039312 137 QFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVS-WVL---- 211 (579)
Q Consensus 137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g-~~~---- 211 (579)
......+..+.+.++.++..+.-+.+.+++... -+.+++.+..+++++..+.+.+ |.+++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdq---f~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQ---FEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhh---cCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 234445677778899999999999999998873 2355567788989887776665 4555555544332 211
Q ss_pred --HHH-HHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchh
Q 039312 212 --GFA-IPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCL 288 (579)
Q Consensus 212 --~f~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 288 (579)
.+. ..++.+++.++.++.....++..++.+.......++........+
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~----------------------------- 207 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR----------------------------- 207 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------------------
Confidence 122 333344444444444444333333322221112222211111100
Q ss_pred hhhhcccCCCcccccCCCCCCCcccc--chhHHHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCcccc
Q 039312 289 DRAALITEPSHELQEQGTPKNGWRLC--SLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKM 366 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 366 (579)
++.. ..+. .....|... ....+++.+...+.+.++...+.+++.+.+.......+..+++...+ ++..
T Consensus 208 ~~~~--~~~~-------~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g 277 (654)
T TIGR00926 208 KRFS--TRSE-------HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGG 277 (654)
T ss_pred Hhhc--cCCc-------ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCC
Confidence 0000 0000 001122111 11122346777778888888888888877766677777777776554 2433
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 367 PPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELA 435 (579)
Q Consensus 367 ~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~ 435 (579)
.+.....++.+..++.+++...+..++++++. | .....+.+.-+.+.++++.+..+.....+.+.-
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~-~--~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA-K--CGTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH-h--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567789999999999999988889998863 2 223467788899999999888888887777765
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0048 Score=69.06 Aligned_cols=130 Identities=11% Similarity=0.022 Sum_probs=90.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------
Q 039312 369 AWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKR--RRELA----------- 435 (579)
Q Consensus 369 ~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~--~~~~~----------- 435 (579)
+.+.....++..+..++..++ ..|. ++.+.+.+|+++++++.++.++.+.. +++..
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 445556666666666666555 4443 34477888888888888877655311 01000
Q ss_pred ------hhcC-------------CCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHH
Q 039312 436 ------LKHD-------------SFVS--PMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSV 494 (579)
Q Consensus 436 ------~~~~-------------~~~~--~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~i 494 (579)
.... .... ...+..+++.-++.|+++....+....++.|.+|++.|+.+.|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0000 0000 113455667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 039312 495 ASYVSSLVINIIHRV 509 (579)
Q Consensus 495 g~~l~~~l~~~v~~~ 509 (579)
|..+|+.+.+.+.+.
T Consensus 220 G~~lG~llgg~l~~~ 234 (633)
T TIGR00805 220 GPAFGYLLGSFCLQI 234 (633)
T ss_pred hhHHHHHHHHHHHhc
Confidence 999999998877643
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.027 Score=59.87 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=92.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchH
Q 039312 369 AWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLL 448 (579)
Q Consensus 369 ~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (579)
+++.....++..+..|+++.+ ..|. ....+.+.+|.++++++.++....++. ..-..|
T Consensus 74 G~viaa~slg~~i~~liF~~W----s~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~------------~~~~~y 131 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW----SNKT------GSVKKPLIVSFLIAIIGNLLYLALAYV------------PNGVKY 131 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc----cccc------CCcccCHHHHHHHHHHHHHHHHHHHhc------------ccchHH
Confidence 456666888889999988877 3332 133577899999999999888665531 111557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----c--------cCCc
Q 039312 449 TLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK----R--------TGNS 516 (579)
Q Consensus 449 ~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~----~--------~~~~ 516 (579)
++....++.|+|.+.... .=.|+++.+-.+.|.++++..+....+|..+||.+...+...-. . ....
T Consensus 132 ~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap 210 (488)
T KOG2325|consen 132 LMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAP 210 (488)
T ss_pred HHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchH
Confidence 788899999998655433 45666665444556666666666666666666665544432211 0 1122
Q ss_pred ChH-HHHHHHHHHHhhcccccccccc
Q 039312 517 PWL-GAVNFVYFSFFASHFVVNTTVA 541 (579)
Q Consensus 517 ~w~-~~l~~l~~~~~~~~~~~~~~~~ 541 (579)
.|. .+++++.++++...+++..++.
T Consensus 211 ~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 211 AWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHHHHhheeecccCc
Confidence 344 5555555566666666655543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.023 Score=45.17 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=59.5
Q ss_pred HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHh
Q 039312 48 NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTA 114 (579)
Q Consensus 48 ~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~ 114 (579)
.+.+.+.++.++|..+++++.+...+++.++.+...++.++ ..+++.+..++++..+....+.+..
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577788999999999999999999999999999999999 6888999999999999998888876
|
Note that many members are hypothetical proteins. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.5 Score=46.55 Aligned_cols=167 Identities=9% Similarity=-0.001 Sum_probs=99.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCC---chhHHHHHHHHHHH-HHHHhhhhhHHHhhcccChhHHHHHH
Q 039312 24 GWRAIKYILGNETFEKLASMSLISNITVYLQNNYNL---GGVLLVNIVTIWSG-SNNITSLLGAFVSDAYLGRFRTLLVG 99 (579)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~---s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~l~~~ 99 (579)
.++.++.+.+.-+|..+.++-+ --+.+.+.. ++.....+-...-. ++.+..++-+++.++ +-|.+++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence 4566666767666665555432 233444444 44556666666666 677888999999999 7999998887
Q ss_pred HHHHHHHHHHHHHHhhhcc--cCCCC-C--C-----CC----CCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhh
Q 039312 100 SIASLLGMLMMTLTAGIHQ--LRPSS-C--G-----DP----PHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGAD 165 (579)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~~-~--~-----~~----~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 165 (579)
+..+...++++++.. .|. ...|. . . +| +.-..-+.|+...+++.-=+.|-- ...-.-..+..|
T Consensus 99 ~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNe 175 (509)
T COG3202 99 LGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANE 175 (509)
T ss_pred HHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 777777777776654 221 11111 0 0 01 001111234555555443332211 111123566677
Q ss_pred cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 166 QFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 166 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
++.. ++..+++..++...|++..++..+..++.+
T Consensus 176 itt~------~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 176 ITTI------EEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7662 455678999999999999999999888765
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.039 Score=60.41 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=82.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHH
Q 039312 371 MNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTL 450 (579)
Q Consensus 371 ~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (579)
.+.+..++.+++..+.+.+.|.+.|| ..+.+++++.+++-+..+++. +++..
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a~-----------------~~~~~ 174 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFAP-----------------NYWMF 174 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHhC-----------------cHHHH
Confidence 33444445555555555554433333 778888888888877767664 67778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 451 LPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 451 i~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
++.=++.|++........+.+..|..+++.|+.++.+ ......++.+++....++..
T Consensus 175 ~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 175 LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999999 77778888888877776654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.016 Score=61.07 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=73.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh--hhHH
Q 039312 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPE--SMRT 482 (579)
Q Consensus 405 ~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~--~~rg 482 (579)
...+.+..|.++++++.++++... ..+...+.+..+++.+|.++.=|...++..++.|+ ..|.
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~---------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD 154 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISS---------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD 154 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc---------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence 444889999999999988877652 02344677788889999999999999999998875 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 483 VAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 483 ~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
.+.+++.+..++|+.++|.+.+++.+..
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~ 182 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGLLAINY 182 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence 6777888888999999999999988765
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.62 E-value=4.2 Score=43.96 Aligned_cols=168 Identities=12% Similarity=0.116 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCC---chhHHHHHHHHHHH-HHHHhhhhhHHHhhcccChhHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNL---GGVLLVNIVTIWSG-SNNITSLLGAFVSDAYLGRFRTLLV 98 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~---s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~l~~ 98 (579)
..++.++.+.+.-++..+.|. +.--+.+.+=. ++.....+-....+ ++.+..++-.+++|+ ++|.+++.+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 344555555555555444432 22222332211 44444555444444 455567788999999 899999887
Q ss_pred HHHHHHHHHHHHHHHhhhcc---cCCCCCCCCC------CCCC----CCchhHHHHHHHHHHHHHhccCCccchhhhhhh
Q 039312 99 GSIASLLGMLMMTLTAGIHQ---LRPSSCGDPP------HCPQ----PQGWQFCVLFAALTLLSIGAGGIRPCNIAFGAD 165 (579)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 165 (579)
....+..-+.+.++.. .|. ++++.-.|.. ..+. .+.|+...+++.-=+.| .-...-.-+.+..|
T Consensus 95 ~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~fAN~ 171 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWGFANE 171 (491)
T ss_pred HHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 7766666666555543 232 1111000000 0000 00111222222221211 11111123677888
Q ss_pred cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 166 QFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 166 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
.++. ++..+.|.++..+.|+|..++..+..++.+
T Consensus 172 itt~------~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 172 ITTV------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred cCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8873 445678999999999999999988877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.064 Score=55.92 Aligned_cols=168 Identities=9% Similarity=0.050 Sum_probs=110.4
Q ss_pred HHHHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCC
Q 039312 323 KCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVK 402 (579)
Q Consensus 323 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~ 402 (579)
++++....+.+....+|..-.+..+-+.+ ..+..... .+.++...++..++.+|+++...|+.-.|++||+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~-------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR- 102 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKW-------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR- 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCccc-------ccccccccccccceeccccccccccccccccccc-
Confidence 34444444445555666665555554433 23433322 3356677888899999999999998888876553
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHH
Q 039312 403 RLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRT 482 (579)
Q Consensus 403 ~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg 482 (579)
.-+..+.++.+++++..++..+...-...+...+..+..+...++.+.+.=++.-.+..+.=++..+..-...+-
T Consensus 103 -----PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~ 177 (498)
T KOG0637|consen 103 -----PFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK 177 (498)
T ss_pred -----chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh
Confidence 556677777888887777665322111111112233345556677788888888888888889999875544444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH
Q 039312 483 V-AGAAFFLSLSVASYVSSLVIN 504 (579)
Q Consensus 483 ~-~~gi~~~~~~ig~~l~~~l~~ 504 (579)
+ +.+.+.+..++|+.+|-.+.+
T Consensus 178 ~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 178 TRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hccchhHHHHHHhcceeeeeccc
Confidence 4 999999999999999877665
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.07 Score=57.07 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=100.6
Q ss_pred HHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhH-HHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 039312 48 NITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGA-FVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGD 126 (579)
Q Consensus 48 ~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G-~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (579)
.+..|+...++++..+.+...+.......++..+.. .+.-. +|-|+++..|++...+...+.+++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------ 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------ 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence 346778889999999999999999999999988887 66776 8999999999999999999999987
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039312 127 PPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYI 203 (579)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l 203 (579)
+.+..+....+. ...+...|...++++.+.++ +++++.+++....-.+...++|++-+.+
T Consensus 330 ----------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~------~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 330 ----------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSP------EEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred ----------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccc------ccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 445556665444 44466778888888887773 4467889998888888888888876654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.0036 Score=68.40 Aligned_cols=128 Identities=9% Similarity=-0.015 Sum_probs=3.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh--------
Q 039312 369 AWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSV----EKRRRELAL-------- 436 (579)
Q Consensus 369 ~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~----~~~~~~~~~-------- 436 (579)
+.+...+-++.++...++.++ ..| .++.+.++.|.++++++.++..+- +.++.....
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 455556666666666665554 433 266788999999999998887742 212111100
Q ss_pred ---hc---------------C---CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHH
Q 039312 437 ---KH---------------D---SFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVA 495 (579)
Q Consensus 437 ---~~---------------~---~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig 495 (579)
.. . +......+++++++.++.|+|..-.++.+.+|+.|.++++..+.+.|+......+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 00 0 11122234667778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 039312 496 SYVSSLVINIIH 507 (579)
Q Consensus 496 ~~l~~~l~~~v~ 507 (579)
..+|-.+++...
T Consensus 190 Pa~Gf~lg~~~L 201 (539)
T PF03137_consen 190 PALGFLLGSFCL 201 (539)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 988888877554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.087 Score=58.57 Aligned_cols=130 Identities=11% Similarity=0.088 Sum_probs=90.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh------hc
Q 039312 369 AWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEK----RRRELAL------KH 438 (579)
Q Consensus 369 ~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~----~~~~~~~------~~ 438 (579)
+.+...+-++..+.+-++.++ ..| ..+.+.+++|+++++++.++.++-+. ++++... ..
T Consensus 135 G~I~s~~dig~~l~i~fVsYf----G~r-------~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 135 GLIASSYDIGNLLLIIFVSYF----GSR-------GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred eeEeeecccchhhhhHhHHHh----ccc-------cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 344445555555555555444 333 36678899999999999888775422 2222221 00
Q ss_pred -------------C-------CC----CCc-cchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHH
Q 039312 439 -------------D-------SF----VSP-MSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLS 493 (579)
Q Consensus 439 -------------~-------~~----~~~-~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ 493 (579)
. +. .+. ..+..++++.++.|+|+....+.+.+|+.|.+.++.-..+.|+......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 00 111 1344667788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 039312 494 VASYVSSLVINIIHRV 509 (579)
Q Consensus 494 ig~~l~~~l~~~v~~~ 509 (579)
+|-++|.+++++....
T Consensus 284 lGPaiGfllgS~~l~l 299 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKL 299 (735)
T ss_pred hhhHHHHHHHHHHHHe
Confidence 9999998888876543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.9 Score=42.14 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHH
Q 039312 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVA 484 (579)
Q Consensus 405 ~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~ 484 (579)
++...+.+|.++..++..+......+ ...+.+.|.+....++.+.+....+.....-..+.+|. .||++
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~----------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v 132 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSG----------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV 132 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC----------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence 45577788888888888776655421 11224566667667777788888888888888899995 69999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 039312 485 GAAFFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 485 ~gi~~~~~~ig~~l~~~l~~~v~ 507 (579)
.|+.-...++++.+=..+...+.
T Consensus 133 vgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 133 VGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred ehhhhHHHHhHHHHHHHHHHHHc
Confidence 99999888888777655554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.7 Score=39.06 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~ 507 (579)
.++.+++.-++.|++..+.+.+.-.++.+...++.|++..+++......+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999888888888877655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.47 Score=49.47 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChh---hHHHH
Q 039312 408 QRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPES---MRTVA 484 (579)
Q Consensus 408 ~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~---~rg~~ 484 (579)
+.+..|.++..++.+++.+.... ....++.+...+.+...++++|.+..=|....+..++.+++ .|..+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~--------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~ 73 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP--------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS--------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc--------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence 45777888888888776554310 00011233456788888999999999999999999998865 46667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 485 GAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 485 ~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
...+....++|..++..+.+++.+..
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~ 99 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNY 99 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS
T ss_pred HHHHHHHHhhhhHhhcccchhhcccc
Confidence 77788899999999988888887543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.5 Score=43.89 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHHhhhhhHHH---hhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCC--CCCCCCCCCCCCCchhHHHHHHHHHH
Q 039312 73 GSNNITSLLGAFV---SDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRP--SSCGDPPHCPQPQGWQFCVLFAALTL 147 (579)
Q Consensus 73 ~~~~~~~~~~G~l---aDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (579)
.+..++..+.+.+ .++ +||++++.++.+++.++.++..+.. |...+ |+- ..+.....++....+.-++
T Consensus 290 ~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~----~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTD----SPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCc----ccccccccchhHHHHHHHH
Confidence 3344444555555 466 7899999999999998888777653 32111 110 0111122245455666678
Q ss_pred HHHhccCCccchhhhhhhcCCC
Q 039312 148 LSIGAGGIRPCNIAFGADQFDT 169 (579)
Q Consensus 148 ~g~g~g~~~~~~~~~~~~~~~~ 169 (579)
+|++-++........+++.+|+
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~~~ 384 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLYPD 384 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999964
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.11 E-value=3.4 Score=44.07 Aligned_cols=91 Identities=23% Similarity=0.168 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ChhhHH
Q 039312 406 LQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQM---PESMRT 482 (579)
Q Consensus 406 ~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~---P~~~rg 482 (579)
+..-+.+|.++..++.+.++.... ...+.......+++..++..+.....-....|.+ |.+ ||
T Consensus 58 r~~Y~~i~~~~~~~~~~~~~~~~~-------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 58 RKPYMIIGWLLGAVSALVLALLPA-------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc-------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 345566666666555555554321 0122333444556667777777777777776654 555 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039312 483 VAGAAFFLSLSVASYVSSLVINIIHRVT 510 (579)
Q Consensus 483 ~~~gi~~~~~~ig~~l~~~l~~~v~~~~ 510 (579)
..++.......+|+.++..+.+...+..
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~~~ 151 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLDSF 151 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 9999999999999999999988776544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.25 E-value=18 Score=37.94 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHR 508 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~ 508 (579)
+.+++-+.-++.|++... -.+.+++++...|+++--++.+..-.+.-+|.+++..++.++..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666655543 57788999999999888888887777777888888887776654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=90.68 E-value=13 Score=39.48 Aligned_cols=138 Identities=8% Similarity=0.006 Sum_probs=95.0
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039312 44 SLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSS 123 (579)
Q Consensus 44 ~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (579)
+.-..+..|+... |++....|..-+...+.+..+.+...++-+| +|.-|+=++++....+...++..+--.|. .|
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~--~~- 350 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG--SP- 350 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC--CC-
Confidence 3345677888766 9999999999999999999999999999999 89999988888776655554444321111 00
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039312 124 CGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVV 201 (579)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~ 201 (579)
....+...++.+.++-=+|.=++.-+...++-|..|+ .+|+...+......++.-.+...++-
T Consensus 351 ---------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~------~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 ---------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE------SERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH------HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0122445555555554466667777878888887774 44566777666666666666655543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.65 E-value=24 Score=36.89 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVI 503 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~ 503 (579)
+-+|.++...++++..+=.....+.+.-+..|.+.+..+..+..+....|-+.|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456777888999999988888899999999988888888887777777766666553
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.60 E-value=4.1 Score=39.86 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhcccChhHH---HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHH
Q 039312 64 LVNIVTIWSGSNNITSLLGAFVSDAYLGRFRT---LLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCV 140 (579)
Q Consensus 64 ~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (579)
-|.+.+.|.+++.+++-+..++..| .|.++ +.+..++.. ..+++...++. -. |+..++..
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~-a~l~Lpilt~~---vs-----------P~kes~~~ 346 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSI-AALLLPILTSS---VS-----------PSKESPSE 346 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHH-HHHHHHHHHhc---cC-----------CCcCCchH
Confidence 4889999999999998888888777 34433 222222222 22222222211 11 22345555
Q ss_pred HHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 039312 141 LFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACL 220 (579)
Q Consensus 141 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~ 220 (579)
-+++..++-.+.|.++|.+.-+=.+..|+ ..|++.++++..-.|+-.-++-...--=....+-|..|.+|-+..
T Consensus 347 s~i~F~~~E~cvGlfwPSimkmRsqyIPE------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~ 420 (454)
T KOG4332|consen 347 SLIGFCLFEACVGLFWPSIMKMRSQYIPE------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFL 420 (454)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHhhCCH------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHH
Confidence 67888888899999999998887777774 446788998877666654433221000001134567888877766
Q ss_pred HHHHHH
Q 039312 221 AFSITL 226 (579)
Q Consensus 221 ~~~~~~ 226 (579)
.++.+.
T Consensus 421 ~~a~i~ 426 (454)
T KOG4332|consen 421 FVASIL 426 (454)
T ss_pred HHHHHH
Confidence 666443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.49 E-value=52 Score=33.80 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=69.6
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSL 447 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
.+.+........+++.++.+.+.|++.||. .++..+.+.. ++.+.-- .-..
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~----------~cl~~cily~-~scl~k~------------------~~~~ 121 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYGRKK----------ACLLFCILYS-LSCLTKH------------------SSNY 121 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHH-HHHHHHh------------------cccc
Confidence 345666777788888888888866655542 4444433333 3332111 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccc
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQ-----MPESMRTVAGAAFF-LSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~-----~P~~~rg~~~gi~~-~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
..++..=++.|++..+.....-++...+ .|++..+...+... +.+++-.+.+..+...+.+..+
T Consensus 122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 5678888999999999998888877633 45554444444444 4455555666666666555543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=84.03 E-value=66 Score=34.65 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039312 449 TLLPQYALSGLTEAFAAV-AIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIH 507 (579)
Q Consensus 449 ~li~~~~l~~~~~~~~~p-~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~ 507 (579)
.....|+...+-..++.. ..|.++.|....+.-.+.-++.....++|..+|+.+...+.
T Consensus 130 ~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 130 SFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666555555555 89999999999999999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.67 E-value=5.5 Score=39.78 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039312 446 SLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVIN 504 (579)
Q Consensus 446 ~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~ 504 (579)
++|.+.+.+++-|+-.+..+...+--+.++.+.+.|..+|+......++|-.+++.+.-
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 34444444455566555666666666677788889999999999999999888877643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.83 E-value=25 Score=33.83 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 039312 447 LLTLLPQYALSGLTEAFAAVAIMEFFTNQMPE-SMRTVAGAAFFL-SLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 447 ~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~-~~rg~~~gi~~~-~~~ig~~l~~~l~~~v~~~ 509 (579)
.+.++......+++.....|....++.+..|+ ..|+...+.... ...++..+++.+.+.+...
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555568888889999999999999998 678888888777 5777888888666655543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.56 E-value=10 Score=40.47 Aligned_cols=119 Identities=12% Similarity=-0.014 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhcccChh-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHH
Q 039312 63 LLVNIVTIWSGSNNITSLLGAFVSDAYLGRF-RTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVL 141 (579)
Q Consensus 63 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (579)
-.-.+...|+++-.++..+..+..= -++| +.+.+..+.-.+-..++.+...-|-.+.| .--.+.+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~~--p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p----------~~~~~d~~~ 375 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFMW--PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLP----------VFFPGDAYF 375 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEe--eCCCccchHHHHHHHHHHHHHHHHhcCCccccCC----------eeecccHHH
Confidence 4456677777888777776654311 1222 24444455555555554443311100000 000144566
Q ss_pred HHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039312 142 FAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTG 199 (579)
Q Consensus 142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~ 199 (579)
++..+++|+..|-.......+..+..+ +++++..+. +..++.++|..+|..+
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~---~~e~e~aG~---~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVD---PHEREVAGA---LMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCC---HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 677888999999888887777777755 333333333 3333556666655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 579 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 2e-91
Identities = 95/564 (16%), Positives = 197/564 (34%), Gaps = 72/564 (12%)
Query: 18 SAKKPGGW-RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLV------NIVTI 70
S W R I YI+ +E E+ + + + +T +L L + ++
Sbjct: 3 SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHS 62
Query: 71 WSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHC 130
+ LLG +++D + G++ T+L S+ +G + +
Sbjct: 63 FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH--------------- 107
Query: 131 PQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFT 190
+ L L+++G+GGI+P +F DQFD + + + F+ +YF+
Sbjct: 108 ------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTIN 158
Query: 191 VALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKV 250
+ + N + F IP + + F LGR+ YI++ P V
Sbjct: 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218
Query: 251 VVAACRKRCFSVEP-----GCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQG 305
+ +A + ++ + L A ++
Sbjct: 219 IRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASL 278
Query: 306 TPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFK 365
+ + V+ ++ ++ IL + + DQ+ + ILQA M
Sbjct: 279 QLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV----KPQW 334
Query: 366 MPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAG 425
PA M + L + L I + P ++ +LT +++ GI ++ L +V G
Sbjct: 335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVG 391
Query: 426 SVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAG 485
+++ S +S+ + YAL E + +EF +Q P++M+
Sbjct: 392 TIQLMMDG--------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIM 443
Query: 486 AAFFLSLSVASYVSSLVINIIHRVTKRTGNSPW-----------------LGAVNFVYFS 528
+ + LS++V + L V T + + F+
Sbjct: 444 SFWTLSVTVGNLWVLLANVS---VKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500
Query: 529 FFASHFV-VNTTVAETGVKDVQLE 551
+A + + TG +++ +
Sbjct: 501 LYARSYQMQDHYRQATGSENLYFQ 524
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 30/212 (14%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLL-----VNIVTIWSGSNNITSL 80
+ + E +E+ + + + + Y+ + G + + +I+ I++ ++
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 81 LGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCV 140
+G FV+D +G + G + +LG +++ L G
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS----------------------A 110
Query: 141 LFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGV 200
LF ++ L+ IG G ++P +D + + ++ F+ + F + + V
Sbjct: 111 LFGSIILIIIGTGFLKPNVSTLVGTLYD----EHDRRRDAGFSIFVFGINLGAFIAPLIV 166
Query: 201 VYIQTNVSWVLGFAIPTACLAFSITLFLLGRR 232
Q + + F++ + + ++ G +
Sbjct: 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 73/531 (13%), Positives = 155/531 (29%), Gaps = 161/531 (30%)
Query: 167 FDTTTEKGRAQLESF--------FNWWYFSF-TVALVVVLTGVVYI-QTNVSWVLGFAIP 216
F T K ++ F + + T + +YI Q + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 217 TACLAFSIT---LFLLGRRCYIYIKPAGSVFSD-MA---KVVVAA--CR----KRCFS-- 261
++++ +L R+ + ++PA +V D + K VA C +
Sbjct: 128 K----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 262 ---VEPGCEHNYYDPPLMIKLKR------TNRFKCLDRAALITEPSHELQEQGTPKNGWR 312
+ ++ ++ L++ N D ++ I H +Q
Sbjct: 184 IFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--------E 233
Query: 313 LCSLQQVEQLK-CLIAIL-PVCVSGIA------C---FISMDQQNTFGILQAIQMNKSVG 361
L L + + + CL+ +L V + C + +Q T + A + S+
Sbjct: 234 LRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 362 PH---------------------FKMPPA----------------------WMN------ 372
H +P W N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 373 --ITSMLALSLWIL-------IYERLYI-PVATKIAGKVKRL-TLQQRIKTGIVMSILCM 421
+T+++ SL +L +++RL + P + I + L + + VM ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNK 410
Query: 422 LVAGS-VEKRRRELALK-HD---SFVSPMSLLT-----LLPQYAL--SGLTEAFAAVAIM 469
L S VEK+ +E + + ++ Y + + ++ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 470 EFFTN------------QMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTKRTGNSP 517
++F + + R V FL ++ I H T +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMV-----FLDF---RFLEQ---KIRHDSTAWNASGS 519
Query: 518 WLGAVNFVYFSFFASHFVVNTTVAETGVKDVQLENVVAGNSANLPRRESID 568
L + F+ + N E V + + + NL + D
Sbjct: 520 ILNTLQ--QLKFYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKYTD 566
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.82 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.38 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.19 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.77 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.9 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=268.25 Aligned_cols=416 Identities=14% Similarity=0.218 Sum_probs=283.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHh-----cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNN-----YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTL 96 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l 96 (579)
+++++.++.+.+..+++++++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45678889999999999999999999999999998 9999999999999999999999999999999944999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhh
Q 039312 97 LVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRA 176 (579)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (579)
+++.++..++.+++.++. +.+.++++|+++|++.|...++..++++|++|+++ +
T Consensus 89 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~ 142 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----R 142 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----T
T ss_pred HHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----c
Confidence 999999999998887765 45678999999999999999999999999999633 3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecC---CCC-ChhhHHHHHHH
Q 039312 177 QLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIK---PAG-SVFSDMAKVVV 252 (579)
Q Consensus 177 ~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~v~~ 252 (579)
.|+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+++.+++ +.. .+.++..+...
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 36788998999999999999999999998899999999987776666555554433322211 111 11111111000
Q ss_pred --------------HHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhH
Q 039312 253 --------------AACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQ 318 (579)
Q Consensus 253 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (579)
........ +. + +..... ............. ..|+... ..
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~----~~-----~--~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~-~~ 275 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWN----SL-----P--AYINLL--TIVAIAIPVFYFA-------------WMISSVK-VT 275 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSC----CT-----T--HHHHHH--HHHHHHHHHHHHH-------------HHC-------
T ss_pred HHHHHHHHHHHHHHHHHhccCc----cc-----c--cchhhh--hHHHHHHHHHHHH-------------HHhhccc-cc
Confidence 00000000 00 0 000000 0000000000000 0000000 01
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhh-cCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 039312 319 VEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ-MNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKI 397 (579)
Q Consensus 319 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~ 397 (579)
..++++.....++++....++..+.+..+....+... .+.+. ...+.+...+.+..++..++.+++.+ |+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~----r~ 346 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT----AW 346 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHHH----HH
Confidence 1233444445566666677777777766654443322 22221 34566777788888888888877744 44
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039312 398 AGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP 477 (579)
Q Consensus 398 ~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P 477 (579)
.+|+ ......+..|.++.++++++....... . ....+.+++++++.+++.+++.....|..++++.+.+|
T Consensus 347 ~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 347 KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------Y-GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------C-CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred hccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------c-CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 3332 355677778888888887776654311 0 11123466777888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039312 478 ESMRTVAGAAFFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 478 ~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
++.||+++|+.+...++|+.+++.+.+.+.+.
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998877654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=272.11 Aligned_cols=441 Identities=20% Similarity=0.274 Sum_probs=277.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcC------CchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-ChhHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYN------LGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-GRFRT 95 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~------~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~ 95 (579)
++++.++.+.+..++.++++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 345677788889999999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhh
Q 039312 96 LLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGR 175 (579)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 175 (579)
++++.++..++.+++.++. .+.+.++++|++.|++.+...+...++++|++|++ ++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~r 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS---NK 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT---TT
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc---ch
Confidence 9999999999888877753 14567889999999999999999999999999953 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHH
Q 039312 176 AQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAAC 255 (579)
Q Consensus 176 ~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (579)
..+.+.+++++.+.++|.+++|.+++++.+..||++.|++.++..+++++.++...++..++++++++..+..+......
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 44566778888899999999999999998888999999998877666655555444433222222211111111111111
Q ss_pred HhcccccCCCCCCcccCCcc----ccccccCcccchhhhhhcccCCCcccccCCCCCCCcc-------ccchhHHHHHHH
Q 039312 256 RKRCFSVEPGCEHNYYDPPL----MIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWR-------LCSLQQVEQLKC 324 (579)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~k~ 324 (579)
+++..+.+ .. ........ .....+.+....+........-.+|. + ...+|+ .......++.|+
T Consensus 224 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (524)
T 2xut_A 224 LTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-V---GAGASLQLERARKSHPDAAVDGVRS 297 (524)
T ss_dssp ---CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-H---HTGGGTHHHHSCCSCCSSSSTTTTT
T ss_pred hhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-c---ccchhhHHhhhhccccHhHHHHHHH
Confidence 11100000 00 00000000 00000000000000000000000000 0 001110 000001122344
Q ss_pred HHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCC
Q 039312 325 LIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRL 404 (579)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~ 404 (579)
.+....++.....++..+.+..+.+..+...++... + .+.+.+...+.+..++..++.+++..+..+|+.++ .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 370 (524)
T 2xut_A 298 VLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L 370 (524)
T ss_dssp HHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence 444455555556666667776666655554443321 1 24566677777777888888888765655654322 3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHH
Q 039312 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVA 484 (579)
Q Consensus 405 ~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~ 484 (579)
...+++..|+++.++++++.+.....+ +.....+.+++++.+++.++++....|..++++.+.+|++.||++
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 442 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence 556677788888888876665432100 001123566778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 039312 485 GAAFFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 485 ~gi~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+|++++..++|+.+++.+.+.+.+.
T Consensus 443 ~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 443 MSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988763
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-23 Score=221.11 Aligned_cols=354 Identities=9% Similarity=0.004 Sum_probs=228.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+.++.+..+.+..++..+..+.+.. +.+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence 3445555555566666666554444 4556788999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHH---HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhh
Q 039312 103 SLLGMLMM---TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLE 179 (579)
Q Consensus 103 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 179 (579)
..++.+++ ..+. +++.++++|++.|++.|...+...++++|.+|+ ++|+
T Consensus 101 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~ 152 (438)
T 3o7q_A 101 YALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSGH 152 (438)
T ss_dssp HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTHH
T ss_pred HHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhHH
Confidence 99999888 4433 678899999999999999999999999999995 4467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhc-cc
Q 039312 180 SFFNWWYFSFTVALVVVLTGVVYIQ-TNVS-------------------------WVLGFAIPTACLAFSITLFLLG-RR 232 (579)
Q Consensus 180 ~~~~~~~~~~~ig~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~-~~ 232 (579)
+.+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..+++++. .|
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p 232 (438)
T 3o7q_A 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7788999999999999999999887 5444 9999977666544444433332 11
Q ss_pred eeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCcc
Q 039312 233 CYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWR 312 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 312 (579)
+..++++++++ + .
T Consensus 233 ~~~~~~~~~~~---------------------~-------------------~--------------------------- 245 (438)
T 3o7q_A 233 ALQSDNHSDAK---------------------Q-------------------G--------------------------- 245 (438)
T ss_dssp CCTTTCCCCSS---------------------T-------------------T---------------------------
T ss_pred ccccccccccc---------------------c-------------------c---------------------------
Confidence 11000000000 0 0
Q ss_pred ccchhHHHHHHHHHh---hhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHH
Q 039312 313 LCSLQQVEQLKCLIA---ILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERL 389 (579)
Q Consensus 313 ~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~ 389 (579)
...+..+..++ .....+...++...+........... +....+. -....+.+..+..+..++..++..++
T Consensus 246 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 246 ----SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA--VEEIPGM-TAGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp ----SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 11111111111111111111111110 1111110 00123344455555666666666666
Q ss_pred HHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 039312 390 YIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIM 469 (579)
Q Consensus 390 ~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~ 469 (579)
. +|+ .+.+.+..+.++.+++.+...... +. +.+..+++.+++.....|..+
T Consensus 319 ~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 319 I----SRF-------APHKVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLCSAFMSIQYPTIF 369 (438)
T ss_dssp H----HHS-------CHHHHHHHHHHHHHHHHHHHHHCC-----------------HH-HHHHHHHHHHHHHTTHHHHHH
T ss_pred H----HHh-------cchHHHHHHHHHHHHHHHHHHHcC-----------------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4 342 233556666766666665554432 22 234445777888888999999
Q ss_pred HHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 470 EFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 470 ~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
.+..+..|++ ++.+.++.. ...+|+.+++.+.+.+.+..+
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999999977 888888877 567999999999999887754
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=230.08 Aligned_cols=373 Identities=12% Similarity=0.010 Sum_probs=234.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++.+.+..++..+..+.+...+ +++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||++++++.++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence 344445555556555555555555 4556677 999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHH----HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 106 GMLMMTL----TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 106 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+.+++.+ +. +++.++++|++.|++.+...+...+++.|.+|+ ++|+++
T Consensus 105 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~ 156 (451)
T 1pw4_A 105 VMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGI 156 (451)
T ss_dssp HHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHH
T ss_pred HHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhHH
Confidence 9999988 55 456789999999999999999999999999984 456888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
+++++.+.++|.+++|.+++++.+..| |++.|++.++..++..++.++..++..+.....+.
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 219 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------- 219 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-----------------
Confidence 999999999999999999999888888 99999988876655544443333321111000000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh---hhhHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILPVCVSGIA 337 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~ 337 (579)
.+.. ..+. ++. .++. + ...+++ +. ..+..++ ...+.+...+
T Consensus 220 --~~~~------~~~~------~~~--~~~~-----------~---~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 220 --EEYK------NDYP------DDY--NEKA-----------E---QELTAK-----QI-FMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp --TTTC------CC-----------------------------------CCT-----HH-HHHHTSSCHHHHHHHHHHHH
T ss_pred --hhhc------cccc------ccc--hhhh-----------h---cccccc-----cc-hHHHHHcCHHHHHHHHHHHH
Confidence 0000 0000 000 0000 0 000000 00 0011111 1111111111
Q ss_pred HHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHH
Q 039312 338 CFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417 (579)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~ 417 (579)
....+...... ....+....+. -....+.+.....++.++..++..++ .+|+.+ .+.+.+..+.++.
T Consensus 264 ~~~~~~~~~~~---~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 264 VYLLRYGILDW---SPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHH---HHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHH
Confidence 11111111111 12222222220 00112344555566666666776666 344310 1224444444444
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHH-H
Q 039312 418 I-LCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSV-A 495 (579)
Q Consensus 418 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g 495 (579)
. ++++...... ..+.+.++...++.+++.....+..+.+..+.+|++.||+++|+.+....+ |
T Consensus 331 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395 (451)
T ss_dssp HHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 3 4444433221 124455666677888888888888899999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhccc
Q 039312 496 SYVSSLVINIIHRVT 510 (579)
Q Consensus 496 ~~l~~~l~~~v~~~~ 510 (579)
..+++.+.+.+.+..
T Consensus 396 ~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 396 SVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887764
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=215.80 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHH
Q 039312 60 GGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFC 139 (579)
Q Consensus 60 s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (579)
+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++........+... -...-..++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~----~~~~~a~~~~ 127 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT----VPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS----CCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH----HHHHHhhhHH
Confidence 44567889999999999999999999999 899999999999999999998864310000000000 0000012678
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--------ccchhH
Q 039312 140 VLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT--------NVSWVL 211 (579)
Q Consensus 140 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~--------~~g~~~ 211 (579)
.++++|+++|+|.|+..+..+++++|..|+ +.|++..++.+.+..+|..+++.++..+.. ..+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 899999999999999999999999999994 446777777777888888888877655432 245777
Q ss_pred HHHHHHHHHHHHHH
Q 039312 212 GFAIPTACLAFSIT 225 (579)
Q Consensus 212 ~f~i~~~~~~~~~~ 225 (579)
.+.+..+..++.++
T Consensus 202 ~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 202 MFASECIPALLFLM 215 (491)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhh
Confidence 77766655444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=202.31 Aligned_cols=165 Identities=17% Similarity=0.172 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLM 109 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~ 109 (579)
.+.+..++..+........++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 3444555555555555555544 577899999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+.++. +.+.++++|++.|++.+...+...+++.|.+|+ ++|++.+++++...
T Consensus 82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER------TQLRHANSLLNMGI 133 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SSCCSHHHHHHHHH
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH------HHHHHHHHHHHHHH
Confidence 88877 677899999999999999999999999999984 33567788888899
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSI 224 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 224 (579)
++|..++|.+++++.+..||++.|++.++..++..
T Consensus 134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999988776555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=196.62 Aligned_cols=366 Identities=11% Similarity=-0.007 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|..+......++..+++..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++|| +|||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 455656666666666667777899999998999999999999999999999999999999999 8999999988877655
Q ss_pred HHHHH---HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 106 GMLMM---TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 106 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
+...+ .+..... ..++.++++.+++.|...+...+...+..++ . .+.++..+
T Consensus 86 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~-~~~~~~~~ 140 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQ---------------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEK---V-SRRSNFEF 140 (417)
T ss_dssp CHHHHHHHTHHHHHH---------------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH---H-HHHHTCCH
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---h-hhhcccch
Confidence 33222 1111000 0122334444444444333334444343321 1 12234456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (579)
+..+...++|.+++|.+++++.+ .+|+..|++.++..++.++..+...++. ++..++ +. .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------~~--~ 200 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV--------------AN--A 200 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS--------------SS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc--------------cc--c
Confidence 66666678999999999998876 5899998876654333322222211110 000000 00 0
Q ss_pred CCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 039312 263 EPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISM 342 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 342 (579)
.+.. .+ ..+++... +...+ +...............+..+
T Consensus 201 ~~~~---------------~~------------------------~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2cfq_A 201 VGAN---------------HS------------------------AFSLKLAL-ELFRQ-PKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp SSSC---------------CC------------------------CCCHHHHH-HHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---------------cc------------------------cccHHHHH-HHhcC-CchhhHHHHHHHHHHHHHHH
Confidence 0000 00 00000000 00001 11111111111111112222
Q ss_pred hccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 039312 343 DQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCML 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l 422 (579)
.++...+.. ........+ ....+....++.+..++..++..++.|++.+| +.+..+.++.+++++
T Consensus 240 ~~~~~~~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 240 DQQFANFFT--SFFATGEQG--TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHH--HTSSSHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHH
Confidence 222221111 111110000 00112334445555555566666664433322 455666666666654
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH-HHHHHHHHHHHHHH
Q 039312 423 VAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA-FFLSLSVASYVSSL 501 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~ 501 (579)
..++.. +.+.++...++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.
T Consensus 305 ~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 305 GSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHTTCC-----------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 443321 334444555556666666777788999999999999999998 58889999999999
Q ss_pred HHHHhhccc
Q 039312 502 VINIIHRVT 510 (579)
Q Consensus 502 l~~~v~~~~ 510 (579)
+.+.+.+..
T Consensus 368 l~G~l~~~~ 376 (417)
T 2cfq_A 368 LAGNMYESI 376 (417)
T ss_dssp HHHTHHHHS
T ss_pred hHHHHHHhc
Confidence 999877643
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-12 Score=132.64 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc--ChhHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL--GRFRTLLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr~~~l~~~~~~~ 103 (579)
+.++...+..++..+.++++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567777778888888889999999999998899999999999999999999999999999999 8 9999888776665
Q ss_pred H-HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 104 L-LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|++++
T Consensus 331 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~ 384 (451)
T 1pw4_A 331 VTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 384 (451)
T ss_dssp HHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHH
T ss_pred HHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHH
Confidence 5 4444333321 11455667777788998888888888999999984 4578889
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 183 NWWYFSFTV-ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 183 ~~~~~~~~i-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
++++...++ |..++|.+.+++.+..||+..|++.++..+++.++.+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999998899999998877766665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-11 Score=123.80 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHH-hHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVY-LQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
+.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 456666677777777888888999999 888889999999999999999999999999999999 899999999988887
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++.+.. +.. ..+..++.|++.+...|...++..|.+|++ ++.+.++
T Consensus 337 ~~~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 337 ALCLISAFAG----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHCC----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHcC----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 7777666543 232 233447788999999999999988988841 2333333
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSIT 225 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 225 (579)
.. ...+|.+++|.+.+++.+..| ++..|++.++..++.++
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33 456999999999999999888 99999887655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=120.99 Aligned_cols=174 Identities=7% Similarity=0.028 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCC---chhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNL---GGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~---s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.+...+..+.....++.....++.|+.+.++. +....+...+...++..++.+++|+++|| +|||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence 33333333333344444445677888766653 34455666676677788889999999999 899999988877776
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++.+.. +...+++...+.+++.+...+....+.+|.+|+ +.|++.++.
T Consensus 301 ~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~ 352 (417)
T 2cfq_A 301 VRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLV 352 (417)
T ss_dssp HHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHH
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHH
Confidence 6654443322 334455566666777666666677899999983 456777877
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 185 -WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 185 -~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
++.+.++|.+++|.++|++.+..|+...|.+.++..+++.++.+..
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4667789999999999999888888888888777666665554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=115.80 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHH-----HHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLL-----VGSI 101 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~-----~~~~ 101 (579)
..+...+..++....++....+++.|..+.++.+..+.+.+.....++..++.++.|+++|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34445555566666677777888899998888887778888888888899999999999999 89986644 6666
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..++..++.+...... .....+...+.++.++.|++.+...+...+++.|.+|+ +.|+++
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------~~~g~~ 423 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK------AFNSQM 423 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT------TCSSSS
T ss_pred HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH------HHHHHH
Confidence 66666665555331100 00112445667777889999999999999999999995 345778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccce
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRC 233 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 233 (579)
.++++...++|..+++.+.+++.+. ++...|++.++..+++.++.+...++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888764 66677777766666555555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-08 Score=105.37 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+........+..+..+....+..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 33444444444444433344445566677788888888888888888899999999999999 89999999988888877
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLF-AALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
...+....... ......+. ......+++ .+..|....+.+|.||+ +.|+++.++.
T Consensus 356 ~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt------~~R~~~~g~~ 411 (491)
T 4gc0_A 356 MFSLGTAFYTQ-----------------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPN------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHHTT-----------------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCT------TTHHHHHHHH
T ss_pred HHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCH------hHHHHHHHHH
Confidence 76665543111 11222222 222222333 33456777899999995 5578888888
Q ss_pred HHHHHHHHHHHHHHHhhhcc------ccchhHHHHHHHHHHHHHHHHHHhcccee
Q 039312 186 YFSFTVALVVVLTGVVYIQT------NVSWVLGFAIPTACLAFSITLFLLGRRCY 234 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~ 234 (579)
+...++|+.+++.+.+.+.+ ..++...|++.++..+++.++.++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88888998888887766543 23455567776666666666555555654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-09 Score=108.45 Aligned_cols=164 Identities=11% Similarity=-0.010 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH-HH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA-SL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~-~~ 104 (579)
|.++...+..++.....+++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| +||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 456666777777788888888899999998899999999999999999999999999999999 7872 2333322 22
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
.+.......... ..+.+.+++..++.|++.+...+...++..|.+| +.|++..+.
T Consensus 276 ~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHHH
T ss_pred HHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHHH
Confidence 222211111100 0144556677788899999999999999999876 346788999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPT 217 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~ 217 (579)
.+...++|..++|.+.+.+.+..+|...+++.+
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 888999999999999999887777887776644
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=77.79 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=86.2
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSL 447 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
.+.+.....++.++..++.+++.|++ . .+.+.+..+.++.+++.+...+.. .+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~----~------g~r~~~~~~~~~~~~~~~~~~~~~----------------~~~ 109 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRF----F------GKYNTILWLSLIYCVGHAFLAIFE----------------HSV 109 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTS----S------CSHHHHHHHHHHHHHHHHHHHHTS----------------SCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----h------cchHHHHHHHHHHHHHHHHHHHhc----------------ccH
Confidence 44556666777777778777775443 0 223667777777777766655431 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA---FFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+.+++..++.+++.....|....++.+.+|++.|+...++ .....++|..+++.+.+.+.+.
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677778899999999999999999999999999877666 8888889999999888776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.21 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.19 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.8e-24 Score=224.57 Aligned_cols=159 Identities=15% Similarity=0.061 Sum_probs=131.5
Q ss_pred HHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 039312 46 ISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCG 125 (579)
Q Consensus 46 ~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (579)
...+.+++. ++|+|..|.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.++++++...+.
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS------- 114 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence 445567776 589999999999999999999999999999999 89999999999999999988877642221
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039312 126 DPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT 205 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~ 205 (579)
++..++++|++.|++.|...+...++++|.+|+ ++|++.+++++.+.++|..+++.+++.+..
T Consensus 115 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 115 -----------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh------hcccccccccccccchhhhhhhhhhhhHhh
Confidence 456789999999999999999999999999984 457888999998999999999988877655
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHhc
Q 039312 206 N-VSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 206 ~-~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
. .+|++.|++.+...++..++.+..
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhHHHHHHHHHHh
Confidence 3 479999888776655544444433
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| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3.2e-21 Score=197.17 Aligned_cols=367 Identities=10% Similarity=-0.052 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|+.|.+.+..++..++.....++++.|+++++|+|..+.|++.+++.++..++.++.|+++|| +||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 667777777888888887788899999999999999999999999999999999999999999 8999999999888888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
+...+.+....+. .....++.+.+.+.+.+...+.......+..+ +..+.+....+..
T Consensus 86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 143 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE----KVSRRSNFEFGRA 143 (417)
T ss_dssp THHHHHHHTHHHH------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHH----HHHHHHSCCHHHH
T ss_pred HHHHHHHhhhhhh------------------HHHHHHHHHHHhhhcccccccchhhccccccc----chhhhhHHHHHHH
Confidence 8877776552111 11123334444444434333333333222222 1122334455566
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhcccccCCC
Q 039312 186 YFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPG 265 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (579)
......+..+++.+++++.+. +|+..+........+..++..+..++....++..++ + +.. ...
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~--~~~ 207 (417)
T d1pv7a_ 144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-V------------GAN--HSA 207 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-H------------HSC--CCC
T ss_pred hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh-h------------hhh--ccc
Confidence 667788888999998888764 455455554444333333333333322111111100 0 000 000
Q ss_pred CCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 039312 266 CEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISMDQQ 345 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 345 (579)
....+.. .....+..................+.
T Consensus 208 -------------------~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (417)
T d1pv7a_ 208 -------------------FSLKLAL--------------------------ELFRQPKLWFLSLYVIGVSCTYDVFD-- 240 (417)
T ss_dssp -------------------CCHHHHH--------------------------HHTTSSHHHHHHHHHHHHHHHHHHHH--
T ss_pred -------------------ccccccc--------------------------cccccccccchhhhhHHHHHHHHhhh--
Confidence 0000000 00000000001111111111111111
Q ss_pred chHHHHHhhhcCCCCCCccccChh---hHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 039312 346 NTFGILQAIQMNKSVGPHFKMPPA---WMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCML 422 (579)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l 422 (579)
.............. ..... .......+...+...+.+++ .+|. .+.+.+..+.++.+++.+
T Consensus 241 -~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~-------~~~~~~~~~~~~~~~~~~ 304 (417)
T d1pv7a_ 241 -QQFANFFTSFFATG----EQGTRVFGYVTTMGELLNASIMFFAPLI----INRI-------GGKNALLLAGTIMSVRII 304 (417)
T ss_dssp -HHHHHHHTTSSSCH----HHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHH-------CHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccc----ccchhhhcccccccccccccchhhhhhh----hccc-------ccccchhhhHHHHHHhhh
Confidence 11111111111100 01111 22223333333333444333 4453 344667777777777766
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHH-HHHHHHHHHHHHH
Q 039312 423 VAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAF-FLSLSVASYVSSL 501 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~l~~~ 501 (579)
...... +.+.+++..++.+++.....+...+++.+.+|++.|+++.|+. ++..++|..+++.
T Consensus 305 ~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 367 (417)
T d1pv7a_ 305 GSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHHTCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cccccc-----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443 5566777788899999999999999999999999999999975 6778899999999
Q ss_pred HHHHhhcccc
Q 039312 502 VINIIHRVTK 511 (579)
Q Consensus 502 l~~~v~~~~~ 511 (579)
+.+.+.+..+
T Consensus 368 ~~G~l~~~~g 377 (417)
T d1pv7a_ 368 LAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
Confidence 9999887653
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.4e-10 Score=119.02 Aligned_cols=179 Identities=12% Similarity=0.006 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++......++.....+++..+.+.|+.+.++++..+.+.......++..++.+++|+++|| ++|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHH
Confidence 566677777788888888999999999999999999999999999999999999999999999 7887655444433333
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 106 GMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
....+...... ...+.....+..++.|++.++..+....+..|.+|+ +.|+++.++.
T Consensus 328 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~ 384 (447)
T d1pw4a_ 328 VTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFT 384 (447)
T ss_dssp HHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHHHHH
T ss_pred HHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHH
Confidence 33332222100 112455666777778888888888888999999984 4567788887
Q ss_pred HHHHHH-HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 039312 186 YFSFTV-ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFL 228 (579)
Q Consensus 186 ~~~~~i-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 228 (579)
+...++ |..++|.+.+++.+..||+..|++.+...+++.++..
T Consensus 385 ~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 777777 4567899999999999999988877665555544433
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| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.7e-11 Score=121.16 Aligned_cols=148 Identities=8% Similarity=0.030 Sum_probs=119.5
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC
Q 039312 55 NNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQ 134 (579)
Q Consensus 55 ~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (579)
...+.+....+.......++..++..+.|++.|| +|||+++.++.++..++.+.+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 310 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT-------------------- 310 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc--------------------
Confidence 3445566677888888888999999999999999 8999999999888888877776654
Q ss_pred chhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH-HHHHHHHHHHHHHHHhhhccccchhHHH
Q 039312 135 GWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW-YFSFTVALVVVLTGVVYIQTNVSWVLGF 213 (579)
Q Consensus 135 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~i~~~~~~~l~~~~g~~~~f 213 (579)
+.+.+++..++.|++.+...+...+++.|.+|+ +.|++.++.. .....+|..++|.+.|++.+..|++..|
T Consensus 311 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~ 382 (417)
T d1pv7a_ 311 --SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 566677888889999999999999999999994 4467778874 4456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 039312 214 AIPTACLAFSITLFLLGR 231 (579)
Q Consensus 214 ~i~~~~~~~~~~~~~~~~ 231 (579)
++.++..++..++..+..
T Consensus 383 ~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 383 LVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 887776665555444443
|