Citrus Sinensis ID: 039357

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNAASDSKSAM
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEcccccccEEEEEEEEcccccEEcEEEEEccccccEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHccccEEEEEccccccEEEEEEEEEccccccccEEEEEccccccEEEEEccccccccEEcccccccccccHccc
Coil and Loop (DISEMBL)
vyaprlddpysrtfescstdtytlygpctyqICYLYLYrsgydgwkpesvtvYGYYTRSITFYyntwipddiwygfnycnaasdsksam
Flexible Loop (DISEMBL)
vyaprlddpysrtfescstdtytlygpCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNAASDSKSAM
Low Complexity Region (SEG)
VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNAASDSKSAM
Disordered region (IsUnstruct)
************TFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNA********
Disordered Region (DISOPRED)
VYAPR**DPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYC**********
Disordered Region (DISEMBL)
VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNA********
Disordered Region (DISPRO)
*YAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYCNAASDSKSAM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
255553155	163	conserved hypothetical protein [Ricinus	0.966	0.527	0.767	2e-34
224054426	166	predicted protein [Populus trichocarpa]	0.955	0.512	0.776	6e-34
317106727	162	JHL06P13.2 [Jatropha curcas]	0.955	0.524	0.788	1e-33
351727573	188	uncharacterized protein LOC100499692 pre	0.955	0.452	0.705	3e-30
388508934	166	unknown [Lotus japonicus]	1.0	0.536	0.696	9e-30
351726094	170	uncharacterized protein LOC100527202 pre	0.988	0.517	0.715	1e-29
3241945	365	unknown protein [Arabidopsis thaliana]	0.988	0.241	0.602	1e-29
297797187	188	hypothetical protein ARALYDRAFT_496397 [	0.966	0.457	0.627	3e-29
351722061	190	uncharacterized protein LOC100305495 pre	0.921	0.431	0.719	3e-29
15241727	190	Embryo-specific protein 3, (ATS3) [Arabi	0.966	0.452	0.627	3e-29

>gi|255553155|ref|XP_002517620.1| conserved hypothetical protein [Ricinus communis] gi|223543252|gb|EEF44784.1| conserved hypothetical protein [Ricinus communis]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 77/86 (89%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VYAPRLDDPYS TFESCSTDT+ + GPCTYQICY+YLYRSGYDGWKP++VTVYGYYT+S+
Sbjct: 78  VYAPRLDDPYSATFESCSTDTFQIKGPCTYQICYVYLYRSGYDGWKPKTVTVYGYYTKSV 137

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSK 86
           TF YNT+IP+ +W+GFNYCN A  S 
Sbjct: 138 TFTYNTFIPNGVWFGFNYCNGALSSN 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054426|ref|XP_002298254.1| predicted protein [Populus trichocarpa] gi|222845512|gb|EEE83059.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 77/85 (90%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VY PRLDDP SRTFESCSTDT+ + GPCTYQICY+YLYR+GYDGWKPES+T+ GYYT S+
Sbjct: 81  VYVPRLDDPRSRTFESCSTDTFHIDGPCTYQICYVYLYRNGYDGWKPESITISGYYTSSV 140

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDS 85
           TFYYNT+IP+ +WYGFN+CNAAS S
Sbjct: 141 TFYYNTFIPNAVWYGFNHCNAASSS 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106727|dbj|BAJ53223.1| JHL06P13.2 [Jatropha curcas]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 75/85 (88%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VY PRLDDPYSRTFESCSTDT+ + GPCTYQICYLYLYRSGYDGWKP++VTVYG+ TR+ 
Sbjct: 77  VYVPRLDDPYSRTFESCSTDTFQVTGPCTYQICYLYLYRSGYDGWKPKTVTVYGHNTRNA 136

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDS 85
            F YN +IP+DIWYGFNYCN AS S
Sbjct: 137 VFTYNIFIPNDIWYGFNYCNRASAS 161

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727573|ref|NP_001238445.1| uncharacterized protein LOC100499692 precursor [Glycine max] gi|255625831|gb|ACU13260.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           +YAPRLDDP S TFESCS+DT+ + GPC YQICY+YLYRSG DGWKPESV +  Y  R++
Sbjct: 81  IYAPRLDDPASGTFESCSSDTFQITGPCAYQICYVYLYRSGLDGWKPESVKINSYNGRAV 140

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDS 85
           TFYYNT+IP D WYGFN CN AS S
Sbjct: 141 TFYYNTYIPRDTWYGFNLCNGASSS 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508934|gb|AFK42533.1| unknown [Lotus japonicus]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 71/89 (79%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VY PRLDDP SRTFE CSTDT+ + GPCTYQICYLYLYRSGYDGW PESVTV GY ++ +
Sbjct: 78  VYVPRLDDPSSRTFERCSTDTFQINGPCTYQICYLYLYRSGYDGWIPESVTVSGYNSQPV 137

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSKSAM 89
           TFYYN +IP  IW+GF+YC     S +AM
Sbjct: 138 TFYYNAFIPAGIWFGFDYCRGYLPSTAAM 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726094|ref|NP_001236347.1| uncharacterized protein LOC100527202 precursor [Glycine max] gi|255631774|gb|ACU16254.1| unknown [Glycine max]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 71/88 (80%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VY PRLDDP S TFE CSTDT+ +YGPCTYQ CYLYLYRSGYDGW PE VTVY YY + +
Sbjct: 81  VYVPRLDDPGSGTFERCSTDTFEIYGPCTYQTCYLYLYRSGYDGWMPEKVTVYSYYYQPV 140

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSKSA 88
           TFYYNT+IP+DIWYGF+YC     S +A
Sbjct: 141 TFYYNTYIPNDIWYGFDYCRGYLPSGTA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3241945|gb|AAC23732.1| unknown protein [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 66/88 (75%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           VY  RLDDP SRTFE CS+DTY + GPC   +CYLYL R G DGWKPE+V +YG   RS+
Sbjct: 80  VYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSV 139

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSKSA 88
           TFYYN ++P+ +WYGFN CN   ++KS+
Sbjct: 140 TFYYNLFLPNSVWYGFNVCNGIGNTKSS 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797187|ref|XP_002866478.1| hypothetical protein ARALYDRAFT_496397 [Arabidopsis lyrata subsp. lyrata] gi|297312313|gb|EFH42737.1| hypothetical protein ARALYDRAFT_496397 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 72/86 (83%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           +YAPRLDDP ++TFE CS+DT+ + GPCTYQICY+YLYRSG DGW P+SV ++ + ++++
Sbjct: 78  IYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPDSVKIFSHGSKAV 137

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSK 86
           TF YNT +P+ +WYGFNYCN ASDS 
Sbjct: 138 TFSYNTHVPESVWYGFNYCNRASDSN 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722061|ref|NP_001236207.1| uncharacterized protein LOC100305495 precursor [Glycine max] gi|255625691|gb|ACU13190.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 67/82 (81%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           +YAPRLDDP S TFESCS+DT+ + GPC YQICY+YLYRSG DGWKPESV + GY  R +
Sbjct: 82  IYAPRLDDPASGTFESCSSDTFQITGPCAYQICYVYLYRSGLDGWKPESVKINGYNGRPV 141

Query: 61  TFYYNTWIPDDIWYGFNYCNAA 82
           TFYYNT+IP D WYGFN CN A
Sbjct: 142 TFYYNTYIPRDTWYGFNLCNGA 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241727|ref|NP_201026.1| Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana] gi|38603856|gb|AAR24673.1| At5g62200 [Arabidopsis thaliana] gi|51968404|dbj|BAD42894.1| unknown protein [Arabidopsis thaliana] gi|51970212|dbj|BAD43798.1| unknown protein [Arabidopsis thaliana] gi|332010197|gb|AED97580.1| Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 73/86 (84%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
           +YAPRLDDP ++TFE CS+DT+ + GPCTYQICY+YLYRSG DGW P +V +Y + ++++
Sbjct: 80  IYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAV 139

Query: 61  TFYYNTWIPDDIWYGFNYCNAASDSK 86
           TF YNT++P+ +WYGFNYCN+ASDS 
Sbjct: 140 TFPYNTYVPESVWYGFNYCNSASDSN 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2167908	190	AT5G62200 "AT5G62200" [Arabido	0.955	0.447	0.635	6e-32
TAIR|locus:4515102981	179	AT2G41475 "AT2G41475" [Arabido	0.988	0.491	0.602	2.7e-29
TAIR|locus:2167928	223	AT5G62210 "AT5G62210" [Arabido	0.898	0.358	0.512	1.9e-19
TAIR|locus:2182865	213	ATS3 "AT5G07190" [Arabidopsis	0.977	0.408	0.373	3.9e-12

TAIR|locus:2167908 AT5G62200 "AT5G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 54/85 (63%), Positives = 73/85 (85%)

Query:     1 VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
             +YAPRLDDP ++TFE CS+DT+ + GPCTYQICY+YLYRSG DGW P +V +Y + ++++
Sbjct:    80 IYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAV 139

Query:    61 TFYYNTWIPDDIWYGFNYCNAASDS 85
             TF YNT++P+ +WYGFNYCN+ASDS
Sbjct:   140 TFPYNTYVPESVWYGFNYCNSASDS 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:4515102981 AT2G41475 "AT2G41475" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 53/88 (60%), Positives = 66/88 (75%)

Query:     1 VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
             VY  RLDDP SRTFE CS+DTY + GPC   +CYLYL R G DGWKPE+V +YG   RS+
Sbjct:    80 VYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSV 139

Query:    61 TFYYNTWIPDDIWYGFNYCNAASDSKSA 88
             TFYYN ++P+ +WYGFN CN   ++KS+
Sbjct:   140 TFYYNLFLPNSVWYGFNVCNGIGNTKSS 167

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167928 AT5G62210 "AT5G62210" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query:     1 VYAPRLDDPYSRT--FESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTR 58
             V APRLD P S    FE CS+DT+ + G C   IC +Y+YRSG DGW PE+V +Y   ++
Sbjct:    72 VVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSK 131

Query:    59 SITFYYNTWIPDDIWYGFNYCN 80
             S+ F +N  +P++IWYG NYCN
Sbjct:   132 SVKFDFNKNVPENIWYGNNYCN 153

GO:0003674 "molecular_function" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2182865 ATS3 "AT5G07190" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query:     1 VYAPRLDDPYSRT--FESCSTDTYTLYGPCTYQ-ICYLYLYRSGYDGWKPESVTVYGYYT 57
             VYAP+L            CST+T+ + G C    IC LY+ R+G DGW PES+ +Y   +
Sbjct:    66 VYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGS 125

Query:    58 RSITFYYNTWIPD-DIWYGFNYCNAASDSKS 87
             +S+ F ++  +P  + WYG N CN      S
Sbjct:   126 KSVKFDFSKSVPQLNTWYGHNNCNTTGRPSS 156


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.480    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        89   0.00091  102 3  12 22  0.48    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  482 (51 KB)
  Total size of DFA:  103 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.74u 0.11s 7.85t   Elapsed:  00:00:00
  Total cpu time:  7.74u 0.11s 7.85t   Elapsed:  00:00:00
  Start:  Fri May 10 22:21:47 2013   End:  Fri May 10 22:21:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1488 hypothetical protein (167 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam06232	126	pfam06232, ATS3, Embryo-specific protein 3, (ATS3)	1e-38
cd00113	116	cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, A	1e-14

>gnl|CDD|218949 pfam06232, ATS3, Embryo-specific protein 3, (ATS3)

 Score =  124 bits (313), Expect = 1e-38
 Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 1   VYAPRLDDPYS-RTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRS 59
           VY PRLDDP S   FE C+TDT+ + GPCTY ICYLYLYRSG DGW PE+VT+YGY    
Sbjct: 47  VYVPRLDDPSSGGGFERCTTDTFQVSGPCTYPICYLYLYRSGTDGWIPETVTIYGYGYPP 106

Query: 60  ITFYYNTWIPDDIWYGFNYC 79
           +TFY+NT++P+ +WYGFNYC
Sbjct: 107 VTFYFNTFLPEGVWYGFNYC 126

Family of plant seed-specific proteins. Length = 126

>gnl|CDD|238061 cd00113, PLAT, PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

 Score = 63.1 bits (154), Expect = 1e-14
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 1   VYAPRLDDPYSRTFESCSTDTYTL-YGPCTYQICYLYLYRSG---YDGWKPESVTVYGYY 56
              P LD P   +FE  STDT+ +        I  +YL R G    DGW  ES+TV    
Sbjct: 33  SDIPILDGP--GSFERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALG 90

Query: 57  T-RSITFYYNTWIPDDIWYGFNYCN 80
           T +  TF  N W+    WY      
Sbjct: 91  TKKVYTFPVNRWVLGGKWYTSVRSL 115

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF06232	125	ATS3: Embryo-specific protein 3, (ATS3); InterPro:	100.0
cd00113	116	PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin	99.19
cd01754	129	PLAT_plant_stress PLAT/LH2 domain of plant-specifi	98.58
cd01753	113	PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u	98.38
cd01756	120	PLAT_repeat PLAT/LH2 domain repeats of family of p	98.22
cd01752	120	PLAT_polycystin PLAT/LH2 domain of polycystin-1 li	97.82
smart00308	105	LH2 Lipoxygenase homology 2 (beta barrel) domain.	97.61
cd02899	109	PLAT_SR Scavenger receptor protein. A subfamily of	97.43
PF01477	113	PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg	97.07
cd01757	114	PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter	92.94

>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress)

Probab=100.00  E-value=2.3e-47  Score=269.78  Aligned_cols=79  Identities=68%  Similarity=1.446  Sum_probs=78.0

Q ss_pred             CccCCCCCCCC-CCcccccccceeeecccccCceEEEEEEeCCCCCeecEEEEeccCCCceEEEeccccCCCcceeeccC
Q 039357            1 VYAPRLDDPYS-RTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSITFYYNTWIPDDIWYGFNYC   79 (89)
Q Consensus         1 vy~~rLDdp~~-~~FerCstDtF~V~G~C~~~ICylyL~r~G~dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~vwyG~n~C   79 (89)
                      ||+||||||.+ ++||||++|+|+|+|+|+++||||||+|+|+|||+||||+||+++++|++||||+|||+|+|||||+|
T Consensus        46 v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~dGW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C  125 (125)
T PF06232_consen   46 VYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSDGWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC  125 (125)
T ss_pred             EEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCCCCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence            79999999998 99999999999999999999999999999999999999999999999999999999999999999999

ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].

>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

Probab=99.19  E-value=1.1e-10  Score=77.15  Aligned_cols=66  Identities=35%  Similarity=0.502  Sum_probs=59.8

Q ss_pred             cccccccceeeecc-cccCceEEEEEEeCCC---CCeecEEEEeccC-CCceEEEeccccCCCcceeeccC
Q 039357           14 FESCSTDTYTLYGP-CTYQICYLYLYRSGYD---GWKPESVTVYGYY-TRSITFYYNTWIPDDIWYGFNYC   79 (89)
Q Consensus        14 FerCstDtF~V~G~-C~~~ICylyL~r~G~d---gW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~vwyG~n~C   79 (89)
                      |||.++|+|.|..+ .++.|+.|.|.+.+..   +|.+++|+|.... ....+|.++.||..+.++...+|
T Consensus        44 f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~  114 (116)
T cd00113          44 FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS  114 (116)
T ss_pred             ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence            99999999999999 7789999999999774   9999999999765 47899999999999999888765

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.

>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function

Probab=98.58  E-value=2.1e-07  Score=65.67  Aligned_cols=62  Identities=24%  Similarity=0.436  Sum_probs=52.0

Q ss_pred             CCCCCCcccccccceeeecccc-cCceEEEEEEe--CC-CCCeecEEEEeccCC----CceEEEeccccC
Q 039357            8 DPYSRTFESCSTDTYTLYGPCT-YQICYLYLYRS--GY-DGWKPESVTVYGYYT----RSITFYYNTWIP   69 (89)
Q Consensus         8 dp~~~~FerCstDtF~V~G~C~-~~ICylyL~r~--G~-dgW~Pe~V~Iy~~~~----~~vtF~f~~~iP   69 (89)
                      ++....|||.++|+|.|+.++. +.||+|.|.++  |. ++|..++|+|-....    ....|-.|+||-
T Consensus        46 ~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa  115 (129)
T cd01754          46 GAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLA  115 (129)
T ss_pred             ccccccccCCCccEEEEEeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEecc
Confidence            4556799999999999999985 89999999998  44 799999999987432    357788899986

Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase

Probab=98.38  E-value=1.7e-06  Score=58.85  Aligned_cols=66  Identities=26%  Similarity=0.319  Sum_probs=55.7

Q ss_pred             CCCCCCCCcccccccceeeecc-cccCceEEEEEEeC--C-CCCeecEEEEeccCCCceEEEeccccCCCc
Q 039357            6 LDDPYSRTFESCSTDTYTLYGP-CTYQICYLYLYRSG--Y-DGWKPESVTVYGYYTRSITFYYNTWIPDDI   72 (89)
Q Consensus         6 LDdp~~~~FerCstDtF~V~G~-C~~~ICylyL~r~G--~-dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~v   72 (89)
                      |+++.. .|||-++|+|.|+.+ .++.|++|-|.+++  . ++|..++|+|-+.......|..++||..+.
T Consensus        37 L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~~~~~F~c~rWl~~~~  106 (113)
T cd01753          37 LDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGGDEYHFPCYRWIEGYG  106 (113)
T ss_pred             cCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCCCEEEEEhHHeECCCC
Confidence            666553 599999999999986 67999999999994  3 899999999998776667888899998543

As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.

>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function

Probab=98.22  E-value=8e-06  Score=55.33  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=57.1

Q ss_pred             CCCC-CCCCcccccccceeeecccccCceEEEEEEeCC---CCCeecEEEEeccC-CCceEEEeccccCCC
Q 039357            6 LDDP-YSRTFESCSTDTYTLYGPCTYQICYLYLYRSGY---DGWKPESVTVYGYY-TRSITFYYNTWIPDD   71 (89)
Q Consensus         6 LDdp-~~~~FerCstDtF~V~G~C~~~ICylyL~r~G~---dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~   71 (89)
                      |+++ ....|||-++|+|.|...-++.|.+|-|.+++.   ++|..+.|+|-... .+..+|..++||-.+
T Consensus        37 L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~~~~~~~F~~~~Wl~~~  107 (120)
T cd01756          37 LKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPGTGDEYTFPCNRWLDKD  107 (120)
T ss_pred             ccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCcEEeEEEEEECCCceEEEEEeCCccCCC
Confidence            6665 557999999999999999999999999999954   79999999999764 566889999999854

In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.

>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins

Probab=97.82  E-value=9.2e-05  Score=50.24  Aligned_cols=66  Identities=24%  Similarity=0.410  Sum_probs=55.2

Q ss_pred             CCCCCCCCcccccccceeeecc-cccCceEEEEEEeC--C-CCCeecEEEEeccC-CCceEEEeccccCCC
Q 039357            6 LDDPYSRTFESCSTDTYTLYGP-CTYQICYLYLYRSG--Y-DGWKPESVTVYGYY-TRSITFYYNTWIPDD   71 (89)
Q Consensus         6 LDdp~~~~FerCstDtF~V~G~-C~~~ICylyL~r~G--~-dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~   71 (89)
                      |+++....|||-++|+|.|..+ =++.|.+|-|.+++  . ++|.-++|+|-... ..-..|..++||-.+
T Consensus        37 L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~  107 (120)
T cd01752          37 LRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVE  107 (120)
T ss_pred             cCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCc
Confidence            5666556899999999999987 46899999999984  4 89999999999764 556789999999743

Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain

Probab=97.61  E-value=0.0004  Score=45.06  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=51.0

Q ss_pred             CCcccccccceeeeccc-ccCceEEEEEEeC-CCCCeecEEEEecc-CCCceEEEecccc
Q 039357           12 RTFESCSTDTYTLYGPC-TYQICYLYLYRSG-YDGWKPESVTVYGY-YTRSITFYYNTWI   68 (89)
Q Consensus        12 ~~FerCstDtF~V~G~C-~~~ICylyL~r~G-~dgW~Pe~V~Iy~~-~~~~vtF~f~~~i   68 (89)
                      ..|||-++|+|.|..+. ++.+..|.|.+.+ .+.|..++|+|-+. .....+|-.+.||
T Consensus        43 ~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~~~~~F~c~~Wl  102 (105)
T smart00308       43 GIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTGGKYHFPCNSWV  102 (105)
T ss_pred             ccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCCCEEEEEcCcee
Confidence            35999999999999975 8999999999999 79999999999874 6678999999988

>cd02899 PLAT_SR Scavenger receptor protein

Probab=97.43  E-value=0.00049  Score=47.40  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             CcccccccceeeecccccCceEEEEEEeCC-CCCeecEEEEeccCCCceEEEeccccC
Q 039357           13 TFESCSTDTYTLYGPCTYQICYLYLYRSGY-DGWKPESVTVYGYYTRSITFYYNTWIP   69 (89)
Q Consensus        13 ~FerCstDtF~V~G~C~~~ICylyL~r~G~-dgW~Pe~V~Iy~~~~~~vtF~f~~~iP   69 (89)
                      .|||=+.|+|.|++..++.|=.|-|.+.|. |+|.-++|+|-.+..+...|-.++||=
T Consensus        40 ~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~~~g~~~~Fpc~rWla   97 (109)
T cd02899          40 GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCDYVRIKSEDGKVFAFNVKRWIG   97 (109)
T ss_pred             ccCCCceEEEEECccccCceEEEEEECCCCCCCceeeEEEEECCCCCEEEEEcceeeC
Confidence            599999999999999999999999988887 899999999998766667788888873

A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.

>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1

Probab=97.07  E-value=0.0023  Score=41.17  Aligned_cols=56  Identities=30%  Similarity=0.406  Sum_probs=48.3

Q ss_pred             ccccceeeec-ccccCceEEEEEEeCC---CCCeecEEEEecc-CCCceEEEeccccCCCc
Q 039357           17 CSTDTYTLYG-PCTYQICYLYLYRSGY---DGWKPESVTVYGY-YTRSITFYYNTWIPDDI   72 (89)
Q Consensus        17 CstDtF~V~G-~C~~~ICylyL~r~G~---dgW~Pe~V~Iy~~-~~~~vtF~f~~~iP~~v   72 (89)
                      =++|+|.|.. .-++.|..|-|.+.|.   ++|..++|+|-.. .....+|..|.||-.+.
T Consensus        44 g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~  104 (113)
T PF01477_consen   44 GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDK  104 (113)
T ss_dssp             TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTE
T ss_pred             CceEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCC
Confidence            5799999998 4789999999999933   8999999999884 56789999999998654

13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....

>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family

Probab=92.94  E-value=0.52  Score=32.70  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=41.7

Q ss_pred             ceeeecccccCceEEEEEEe--CC-CCCeecEEEEec-cCCCceEEEeccccCC
Q 039357           21 TYTLYGPCTYQICYLYLYRS--GY-DGWKPESVTVYG-YYTRSITFYYNTWIPD   70 (89)
Q Consensus        21 tF~V~G~C~~~ICylyL~r~--G~-dgW~Pe~V~Iy~-~~~~~vtF~f~~~iP~   70 (89)
                      .|.|....++.+-+|-|.|+  |. ++|.-++|+|-. ....-..|--|+||-.
T Consensus        44 ~~~v~~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~   97 (114)
T cd01757          44 EMTFDCQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGE   97 (114)
T ss_pred             EEEEecCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecC
Confidence            57777788899999999998  55 899999999998 4556677888988863

PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3vf1_A	698	11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik	98.51
3dy5_A	1066	Allene oxide synthase-lipoxygenase protein; fusion	97.74
3fg1_A	696	Allene oxide synthase-lipoxygenase protein; arichi	97.67
3v98_A	691	Arachidonate 5-lipoxygenase; dioxygenase, oxidored	97.65
1lox_A	662	15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot	97.5
3cwz_B	384	RAB6IP1, RAB6-interacting protein 1; RAB small GTP	96.36
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	95.61
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	95.08

>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}

Probab=98.51  E-value=1.5e-07  Score=79.79  Aligned_cols=67  Identities=25%  Similarity=0.414  Sum_probs=60.2

Q ss_pred             CCCCCCCCCcccccccceeeecccccCceEEEEEEeCC---CCCeecEEEEeccC-----CCceEEEeccccCCC
Q 039357            5 RLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGY---DGWKPESVTVYGYY-----TRSITFYYNTWIPDD   71 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G~---dgW~Pe~V~Iy~~~-----~~~vtF~f~~~iP~~   71 (89)
                      .||+|....|||.++|+|.|++.|++.||.|-|.++++   ++|..++|+|....     .....|-.+.||-.+
T Consensus        56 ~L~~~~~~~FeRGs~D~F~v~~~~LG~L~~IrI~hDnsG~~~~Wfl~~V~V~~~~t~~~~g~~~~Fpc~rWL~~d  130 (698)
T 3vf1_A           56 SLDKYFHNDFESGGTDTYDQSGVDVGEIAMITLKENGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQ  130 (698)
T ss_dssp             EECCBCSSSSCCCCEEEEEEEECCCSSEEEEEEEECCCSSBCCCEEEEEEEEEECTTTCCEEEEEEEEEEECSSE
T ss_pred             EeCCCCCCccccCCeeEEEEEecccCCceEEEEEECCCCCCCCeEEeEEEEEcCCCCCCCCcEEEEEhhhcccCC
Confidence            58888888999999999999999999999999999953   89999999999875     467889999999865

>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}

Probab=97.74  E-value=3.5e-05  Score=67.92  Aligned_cols=67  Identities=25%  Similarity=0.383  Sum_probs=53.9

Q ss_pred             CCCCCCCCCcccccccceeeecccccCceEEEEEEeC------CCCCeecEEEEeccC-CCceEEEeccccCCC
Q 039357            5 RLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSG------YDGWKPESVTVYGYY-TRSITFYYNTWIPDD   71 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G------~dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~   71 (89)
                      .||+|....|||-++|+|.|+...++.||.|-|.+++      .++|..++|+|.... .....|-.+.||-.+
T Consensus       409 ~L~~~~~~~FeRGs~d~F~v~~~~LG~L~~IrI~hDnsG~~~~~~~Wfl~~V~V~~~~tg~~~~Fpc~rWL~~d  482 (1066)
T 3dy5_A          409 KLDKWFHNDFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCFRWVIKD  482 (1066)
T ss_dssp             EC-------CCTTCEEEEEEECSCCSSEEEEEEECCCCC--CCCCCEEEEEEEEEESSSSSCEEEEEEEEESSE
T ss_pred             EeCCCCcCccccCCcceEEEEEecCCCceEEEEEECCCCCCCCCCCeEEeEEEEEeCCCCCEEEEehhhhccCC
Confidence            4788877899999999999999888999999999994      479999999999875 677899999999865

>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A

Probab=97.67  E-value=6.2e-05  Score=63.86  Aligned_cols=63  Identities=27%  Similarity=0.389  Sum_probs=55.8

Q ss_pred             CCCCCCCCcccccccceeeecccccCceEEEEEEeCC------CCCeecEEEEeccC-CCceEEEeccccCCC
Q 039357            6 LDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGY------DGWKPESVTVYGYY-TRSITFYYNTWIPDD   71 (89)
Q Consensus         6 LDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G~------dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~   71 (89)
                      ||+   ..|||-++|+|.|+...++.||.|-|.++++      ++|..++|+|-... .....|..+.||-.+
T Consensus        43 L~~---~~FeRGs~d~F~v~~~dLG~L~~IrI~hDnsg~G~~~~~Wf~~~V~V~~~~tg~~~~Fpc~rWL~~d  112 (696)
T 3fg1_A           43 LDK---GSFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCFRWVIKD  112 (696)
T ss_dssp             ECS---SCBCTTCEEEEEEEEECCSSEEEEEEEECCCCTTCSCCCEEEEEEEEEETTCSSCEEEEEEEEESSE
T ss_pred             eCC---CCcCCCCccEEEEEEccCCCceEEEEEECCcCCCCCCCCeEeeEEEEEeCCCCcEEEeEhhhhccCC
Confidence            555   6899999999999998889999999999854      79999999999875 677899999999865

>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B

Probab=97.65  E-value=0.0001  Score=62.51  Aligned_cols=63  Identities=24%  Similarity=0.330  Sum_probs=55.1

Q ss_pred             CCCCCCCCcccccccceeeec-ccccCceEEEEEEeC--C-CCCeecEEEEeccCCCceEEEeccccCCC
Q 039357            6 LDDPYSRTFESCSTDTYTLYG-PCTYQICYLYLYRSG--Y-DGWKPESVTVYGYYTRSITFYYNTWIPDD   71 (89)
Q Consensus         6 LDdp~~~~FerCstDtF~V~G-~C~~~ICylyL~r~G--~-dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~   71 (89)
                      ||+   ..|||-++|+|.|+. ..++.||.|-|.+++  . ++|..++|+|.........|..+.||-.+
T Consensus        58 L~~---~~FeRG~~D~F~v~~~~~LG~L~~IrI~hDnsG~~~~Wfl~~V~V~~~~g~~~~Fpc~rWL~~d  124 (691)
T 3v98_A           58 LDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKTPHGDYIEFPCYRWITGD  124 (691)
T ss_dssp             CCS---SCBCTTCEEEEEECCSSCCCSEEEEEEEEECSSSCCCEEEEEEEEECTTSCEEEEEEEEEECSS
T ss_pred             ecC---CcccCCCeeEEEEEeccCCCCceEEEEEECCCCCCCCeEEeEEEEECCCCcEEEEehHHhcCCC
Confidence            554   689999999999999 556899999999994  3 89999999999877777899999999855

>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*

Probab=97.50  E-value=0.0002  Score=60.33  Aligned_cols=58  Identities=10%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             Ccccccccceeeecccc-cCceEEEEEEeCC---CCCeecEEEEeccC--CCceEEEeccccCC
Q 039357           13 TFESCSTDTYTLYGPCT-YQICYLYLYRSGY---DGWKPESVTVYGYY--TRSITFYYNTWIPD   70 (89)
Q Consensus        13 ~FerCstDtF~V~G~C~-~~ICylyL~r~G~---dgW~Pe~V~Iy~~~--~~~vtF~f~~~iP~   70 (89)
                      .|||.++|+|.|..++. +.||.|.|.+.+.   ++|.-++|+|-+.+  ...+.|.-|+||-.
T Consensus        39 ~FerG~~d~F~v~~~~dlG~l~~I~I~~d~~g~~~~Wfl~~V~V~~p~~~g~~~~F~Cn~WL~~  102 (662)
T 1lox_A           39 RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFLKEDAWFCNWISVQALGAAEDKYWFPCYRWVVG  102 (662)
T ss_dssp             CCCTTCEEEEEEECSSCCCSEEEEEEEEECSSSCCCEEEEEEEEEESSSCCCCEEEEEEEEECS
T ss_pred             CcCCCCccEEEEEecCCCCcceEEEEEeCCCCCCCCcEEeEEEEecCCCCCcEEEEEeceEecC
Confidence            79999999999999665 7899999999976   99999999998876  45599999999874

>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}

Probab=96.36  E-value=0.0086  Score=47.67  Aligned_cols=55  Identities=15%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             cccceeeecccccCceEEEEEEe--CC-CCCeecEEEEecc-CCCceEEEeccccCCCc
Q 039357           18 STDTYTLYGPCTYQICYLYLYRS--GY-DGWKPESVTVYGY-YTRSITFYYNTWIPDDI   72 (89)
Q Consensus        18 stDtF~V~G~C~~~ICylyL~r~--G~-dgW~Pe~V~Iy~~-~~~~vtF~f~~~iP~~v   72 (89)
                      ++|+|.|+..|++.|++|-|.++  |. ++|.-++|.|-.. ......|..+.||-.+.
T Consensus       288 ~~d~F~v~~~~LG~L~~I~I~HDnsG~~p~Wfl~~V~V~d~~tg~~~~Fpc~rWL~~d~  346 (384)
T 3cwz_B          288 NVLEMTFECQNLGKLTTVQIGHDNSGLYAKWLVECVMVRNEVTGHTYKFPCGRWLGKGM  346 (384)
T ss_dssp             TCCEEEEEEECCCSEEEEEEEECCCSSCCCEEEEEEEEEETTTCCEEEEEEEEEESTTS
T ss_pred             cCceEEEecccCCCceEEEEEECCCCCCCceeEeEEEEEeCCCCcEEEEECceeCCCCC
Confidence            37899999999999999999998  44 8999999999987 35678899999987443

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=95.61  E-value=0.045  Score=43.73  Aligned_cols=65  Identities=26%  Similarity=0.475  Sum_probs=52.2

Q ss_pred             CCCCCCCCCcccccccceeeec---ccc-cCceEEEEEEeCC----CCCeecEEEEeccCCCceEEEeccccCC
Q 039357            5 RLDDPYSRTFESCSTDTYTLYG---PCT-YQICYLYLYRSGY----DGWKPESVTVYGYYTRSITFYYNTWIPD   70 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G---~C~-~~ICylyL~r~G~----dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~   70 (89)
                      .||++ .+.|||=+.|+|+|.=   +-. +.|=.|-|++...    |+|.|+||+|-.++.....|..+.||-.
T Consensus       291 ~LD~~-gndFe~G~~d~y~v~~~~~~~~lg~l~~v~l~K~~~~~~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~g  363 (370)
T 2wxu_A          291 EMDNP-GNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISG  363 (370)
T ss_dssp             ECCCS-SCTTCTTCEEEEEEECSCTTCCGGGEEEEEEEEECSSSSCCCBCEEEEEEEETTEEEEEEECCSCBCT
T ss_pred             hhhCc-CCCcCCCCeeeEEEecCCCccCcCceEEEEEEccCCCCCCccceeeeEEEEcCCCcEEEeccceeeeC
Confidence            37886 4799999999999943   223 5788888877755    9999999999998766688989999863

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=95.08  E-value=0.043  Score=43.82  Aligned_cols=64  Identities=30%  Similarity=0.438  Sum_probs=51.5

Q ss_pred             CCCCCCCCCcccccccceeeec---cc-ccCceEEEEEEeCC----CCCeecEEEEeccCCCceEEEeccccC
Q 039357            5 RLDDPYSRTFESCSTDTYTLYG---PC-TYQICYLYLYRSGY----DGWKPESVTVYGYYTRSITFYYNTWIP   69 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G---~C-~~~ICylyL~r~G~----dgW~Pe~V~Iy~~~~~~vtF~f~~~iP   69 (89)
                      .||++. +.|||=+.|+|+|.=   +- ++.|=.|-|++...    |+|.|+||+|-.++.....|..+.||-
T Consensus       291 ~LD~~g-ndFe~G~~d~y~v~~~~~~~dlg~l~~v~l~K~~~~~~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~  362 (370)
T 1olp_A          291 ALDNPG-NDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRDEKLTVATDGWKPSYVKVIAGDKVRLEKNINEWIS  362 (370)
T ss_dssp             ECCCSS-CCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSSSSCCEECEEEEEEEETTEEEEEEECCSCEE
T ss_pred             hhhCcC-CccCCCCeeEEEEeccCCcCCcCceEEEEEEcCCCCCCCccceeeeEEEEcCCCcEEEeccceeee
Confidence            478864 799999999999944   22 35687888877665    999999999999876667888888986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1ca1a2	121	Alpha-toxin, C-terminal domain {Clostridium perfri	98.47
d1olpa2	121	Alpha-toxin, C-terminal domain {Clostridium absonu	98.24
d2p0ma2	111	15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T	97.42
d1rp1a1	113	Pancreatic lipase, C-terminal domain {Dog (Canis f	91.2
d1bu8a1	114	Pancreatic lipase, C-terminal domain {Rat (Rattus	90.82

>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=98.47  E-value=2.8e-07  Score=60.69  Aligned_cols=69  Identities=26%  Similarity=0.392  Sum_probs=57.0

Q ss_pred             CCCCCCCCCcccccccceeeeccc----ccCceEEEEEEeC--C--CCCeecEEEEeccCCCceEEEeccccCCCcce
Q 039357            5 RLDDPYSRTFESCSTDTYTLYGPC----TYQICYLYLYRSG--Y--DGWKPESVTVYGYYTRSITFYYNTWIPDDIWY   74 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G~C----~~~ICylyL~r~G--~--dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~vwy   74 (89)
                      .||++. ..|||=++|+|.|..+.    ++.|.+|-|.+.+  .  ++|..++|+|......-..|.+|+||-.+--|
T Consensus        42 ~L~~~~-~~Ferg~~d~F~v~~~d~~~~lG~i~ki~i~hd~~g~~~~~W~l~~V~v~~~~~~~~~F~~nrWl~~~~~~  118 (121)
T d1ca1a2          42 EMDNPG-NDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKVIANGKVVVDKDINEWISGNSTY  118 (121)
T ss_dssp             ECCCSS-SCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSSSSCCCBCEEEEEEEETTEEEEEEECCSCBCSSCEE
T ss_pred             EecCCC-ccccCCcEEEEEEEeCCcCCCcCCceEEEEEEcCccccCchhheEEEEEECCCCeEEEeECCEEECCCCEE
Confidence            477764 67999999999998876    7899999999973  2  68999999997656667899999999866543

>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Alpha-toxin, C-terminal domain
domain: Alpha-toxin, C-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=98.24  E-value=1e-06  Score=57.80  Aligned_cols=69  Identities=29%  Similarity=0.436  Sum_probs=56.2

Q ss_pred             CCCCCCCCCcccccccceeeeccc----ccCceEEEEEEe--CC--CCCeecEEEEeccCCCceEEEeccccCCCcce
Q 039357            5 RLDDPYSRTFESCSTDTYTLYGPC----TYQICYLYLYRS--GY--DGWKPESVTVYGYYTRSITFYYNTWIPDDIWY   74 (89)
Q Consensus         5 rLDdp~~~~FerCstDtF~V~G~C----~~~ICylyL~r~--G~--dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~vwy   74 (89)
                      +|+++ ...|||-++|+|.|..+-    ++.|..|-|.+.  |.  ++|..++|+|-.....-..|.+|+||-.+--|
T Consensus        42 ~L~~~-~~~Ferg~~d~F~v~~~d~~~~lG~i~~i~i~hd~~g~~~~~W~l~~V~v~~~~~~~~~F~~nrWl~~~~~~  118 (121)
T d1olpa2          42 ALDNP-GNDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRDEKLTVATDGWKPSYVKVIAGDKVRLEKNINEWISGGTTY  118 (121)
T ss_dssp             ECCCS-SCCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSSSSCCEECEEEEEEEETTEEEEEEECCSCEETTEEE
T ss_pred             EecCC-CcccccCCeEEEEEEeCCccCCcCceEEEEEEEcCCCCCCcceeEEEEEEECCCCeEEEEECCEEECCCcEE
Confidence            47776 478999999999998765    789999999987  43  57999999996555566899999999866443

>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: 15-Lipoxygenase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.42  E-value=0.00028  Score=44.74  Aligned_cols=58  Identities=10%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             Ccccccccceeeeccc-ccCceEEEEEEeC--C-CCCeecEEEEecc--CCCceEEEeccccCC
Q 039357           13 TFESCSTDTYTLYGPC-TYQICYLYLYRSG--Y-DGWKPESVTVYGY--YTRSITFYYNTWIPD   70 (89)
Q Consensus        13 ~FerCstDtF~V~G~C-~~~ICylyL~r~G--~-dgW~Pe~V~Iy~~--~~~~vtF~f~~~iP~   70 (89)
                      .|||=++|+|.|..+. +..|.+|-|.+.+  . ++|..++|+|-..  +.....|-.+.||-.
T Consensus        39 ~f~rg~~d~F~~~~~~~lG~i~~i~i~~d~~g~~~~W~l~~V~V~~~~~~~~~~~Fpc~~Wl~~  102 (111)
T d2p0ma2          39 RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFLKEDAWFCNWISVQALGAAEDKYWFPCYRWVVG  102 (111)
T ss_dssp             CCCTTCEEEEEEECSSCCCSEEEEEEEEECSSSCCCEEEEEEEEEESSSSCCCEEEEEEEEECS
T ss_pred             ccccCcEEEEEEEeeccccceEEEEEEECCCCCCCCeEEEEEEEEecCCCCeEEEEEcCceECC
Confidence            5999999999999875 7899999999995  3 7999999999865  445688999999973

>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=91.20  E-value=0.59  Score=28.83  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=52.8

Q ss_pred             CCcccccccceeeec-ccccCceEEEEEEe--CC-CCC---eecEEEEecc-CCCceEEEeccccCCCcceeeccC
Q 039357           12 RTFESCSTDTYTLYG-PCTYQICYLYLYRS--GY-DGW---KPESVTVYGY-YTRSITFYYNTWIPDDIWYGFNYC   79 (89)
Q Consensus        12 ~~FerCstDtF~V~G-~C~~~ICylyL~r~--G~-dgW---~Pe~V~Iy~~-~~~~vtF~f~~~iP~~vwyG~n~C   79 (89)
                      +.|||=++|+|.|.. ..++.|=.|-|.++  |. .+|   ..+.|+|... .....+|=-+.++.+++-..-.-|
T Consensus        38 ~~f~~g~~~~f~i~~~~~lG~l~~v~i~hdn~g~~~~w~~~~v~~V~V~~~~~g~~~~Fc~~~~v~~~v~~~l~pc  113 (113)
T d1rp1a1          38 GILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVVNPTFPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTLTPC  113 (113)
T ss_dssp             EEECTTCEEEEEEEESSCCSSEEEEEEEEEEC--CTTCCCEEEEEEEEEETTCSSC-EEECSCEECTTCCEEEEEC
T ss_pred             eeEcCCCEEEEEEEeCCCCCCcEEEEEEECCCCCCCccccceeEEEEEEcCCCCcEEEECcCceEccCceeccccC
Confidence            469999999999985 59999999999987  44 588   8899999865 566788877888988876554433

>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Colipase-binding domain
domain: Pancreatic lipase, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.82  E-value=0.5  Score=29.07  Aligned_cols=65  Identities=8%  Similarity=-0.011  Sum_probs=50.6

Q ss_pred             CCcccccccceeeecc-cccCceEEEEEEeCC---CCC---eecEEEEecc-CCCceEEEeccccCCCcceee
Q 039357           12 RTFESCSTDTYTLYGP-CTYQICYLYLYRSGY---DGW---KPESVTVYGY-YTRSITFYYNTWIPDDIWYGF   76 (89)
Q Consensus        12 ~~FerCstDtF~V~G~-C~~~ICylyL~r~G~---dgW---~Pe~V~Iy~~-~~~~vtF~f~~~iP~~vwyG~   76 (89)
                      +.|||=++|+|.|..+ -+++|=+|-|.++..   .+|   .-+.|+|-.. .....+|=-+.++.+++--.-
T Consensus        39 ~~f~rG~~~~f~~~~~~~lG~l~~i~i~hdn~g~~~~W~~~~l~~V~V~~~~~g~~~~Fc~~~~v~~~~~~~l  111 (114)
T d1bu8a1          39 GSLKPEARHVRDIDVDINVGEIQKVKFLWNNKVINLFRPTLGASQITVQSGVDGKEYNFCSSDTVREDVLQSL  111 (114)
T ss_dssp             EEECTTCEEEEEEEESSCCCSEEEEEEEEEC------CCCBEEEEEEEEETTTCCEEEEECCCCBCTTCCEEE
T ss_pred             hhccCCCceEEEEecCcCCCCcEEEEEEECCCcCCCcccccceEEEEEEeCCCCCEEEEecCceEcCCceeec
Confidence            5699999999999975 999999999999843   577   4778999876 556678877889988775543