Citrus Sinensis ID: 039390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MPNVANQRRDKKKKEGDQHHEERLSEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSSSYGITSGQKRAREMEGGGVRATESSSTSTSTAMQATARYEYSSNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTEPI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpnvanqrrdkkkkegdqhHEERLSevdqgmnyqplmqysdDQRRRWKEREMSAMVSALKHVVAGdidvvasqpqqiqqhdnmNAITNVtstaansdssssygitsGQKRARemegggvratessststSTAMQATARyeyssneksivpeprrkyrgvrqrpwgkwaAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRgnkaklnfpeNVKLVAISssssssspspspstnanpmatqltvsdspttllpiststepi
Flexible Loop (DISEMBL)
mpnvanqrrdkkkkegdqhheerlsevdqgmnyqplmQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTstaansdssssyGITSGQKRAREMEgggvratessstststamqataryeyssneksivpeprrkyrgvrqrpwgkwaaeirDPFKAARVWLGTFDTAEDAARAYDEAALRFrgnkaklnfpENVKLVAISSsssssspspspstnANPMATQltvsdspttllpiststepi
Low Complexity Region (SEG)
MPNVANQRRDKKKKEGDQHHEERLSEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAItnvtstaansdssssYGITSGQKRAREMEGGGVRatessstststamqataRYEYSSNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTaedaaraydeaaLRFRGNKAKLNFPENVKLVAIsssssssspspspsTNANPMATQLTVsdspttllpiststEPI
Disordered region (IsUnstruct)
*******************************************************VSALKHVVAGDIDVV***************************************************************************************GVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLV*********************************************
Disordered Region (DISOPRED)
*****************************************************AMVSALKHVVAGDI********************************************************************************************RQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP***************************************************
Disordered Region (DISEMBL)
************************SEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTS*******************************************ATARYEYSSNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLVA******************NPMATQLTVSDSPTTLLP********
Disordered Region (DISPRO)
***********KKKEG**HHEERLSEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVV************MNAITNVTSTA**********************************************************PRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLVA*************PST****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNVANQRRDKKKKEGDQHHEERLSEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSSSYGITSGQKRAREMEGGGVRATESSSTSTSTAMQATARYEYSSNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTEPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9FGF8	391	Ethylene-responsive trans	yes	no	0.866	0.583	0.44	3e-35
Q9FH54	248	Ethylene-responsive trans	no	no	0.285	0.302	0.773	6e-28
P93007	218	Ethylene-responsive trans	no	no	0.247	0.298	0.8	3e-27
Q9LYU3	212	Ethylene-responsive trans	no	no	0.319	0.396	0.678	2e-26
Q7G1L2	192	Ethylene-responsive trans	no	no	0.593	0.812	0.469	7e-24
O80340	222	Ethylene-responsive trans	no	no	0.334	0.396	0.593	2e-22
P42736	248	Ethylene-responsive trans	no	no	0.304	0.322	0.607	2e-22
O22259	171	Ethylene-responsive trans	no	no	0.266	0.409	0.685	2e-22
Q9LY29	263	Ethylene-responsive trans	no	no	0.353	0.353	0.612	4e-22
Q6K7E6	365	Ethylene-responsive trans	no	no	0.231	0.167	0.721	1e-21

>sp|Q9FGF8|ABR1_ARATH Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 158/300 (52%), Gaps = 72/300 (24%)

Query: 4   VANQRRD-KKKKEGDQHHEER-LSEVDQGMNYQPLMQYSDDQRRRW-------------- 47
           VANQ  +  KK E  +  + R LSE+DQ +    L    DD  R                
Sbjct: 6   VANQEDNVGKKAESIRDDDHRTLSEIDQWLY---LFAAEDDHHRHSFPTQQPPPSSSSSS 62

Query: 48  ------KEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSSS 101
                 +E EMSA+VSAL HVVAG++      PQ  Q                + + +S+
Sbjct: 63  LISGFSREMEMSAIVSALTHVVAGNV------PQHQQ-----------GGGEGSGEGTSN 105

Query: 102 YGITSGQKRAREMEGGGVRATESSSTST-----STAMQATARYEYSSNEKSIVP------ 150
              +SGQKR RE+E GG +A ++++T T     S     +   E SSN     P      
Sbjct: 106 SSSSSGQKRRREVEEGGAKAVKAANTLTVDQYFSGGSSTSKVREASSNMSGPGPTYEYTT 165

Query: 151 --------------EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYD 196
                         +PRR+YRGVRQRPWGKWAAEIRDPFKAARVWLGTFD AE AARAYD
Sbjct: 166 TATASSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYD 225

Query: 197 EAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPI 256
           EAALRFRGNKAKLNFPENVKLV  +S+ +     P   T A    TQ   S S TTLLPI
Sbjct: 226 EAALRFRGNKAKLNFPENVKLVRPASTEA----QPVHQTAAQ-RPTQSRNSGSTTTLLPI 280

Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 66/75 (88%)

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+TAE AA AYDEAAL+F+G+KAKLNFP
Sbjct: 87  RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146

Query: 213 ENVKLVAISSSSSSS 227
           E V+L + S+  SS+
Sbjct: 147 ERVQLGSNSTYYSSN 161

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 60/65 (92%)

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           +R YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE+AA AYD+AA  FRG+KAKLNFP
Sbjct: 67  QRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126

Query: 213 ENVKL 217
           E++++
Sbjct: 127 EHIRV 131

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 66/84 (78%)

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+TAE+AA AYD AAL+F+G KAKLNFP
Sbjct: 36  RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95

Query: 213 ENVKLVAISSSSSSSSPSPSPSTN 236
           E V+    +++ S +    S S N
Sbjct: 96  ERVQGPTTTTTISHAPRGVSESMN 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 98/179 (54%), Gaps = 23/179 (12%)

Query: 83  MNAITNVTSTAANSDSSSSYGITSGQKRAREMEGGGVRATESSSTSTSTAMQATARYEYS 142
           ++ +TNV S      +S+++  T G KR RE      +   + S  T             
Sbjct: 2   VSMLTNVVSGETEPSASATW--TMGHKREREEFSLPPQPLITGSAVTKEC---------- 49

Query: 143 SNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRF 202
             E S+  E  +KYRGVRQRPWGKWAAEIRDP KA RVWLGTF+TAE AARAYD AALRF
Sbjct: 50  --ESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRF 107

Query: 203 RGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTE 261
           RG+KAKLNFPENV    I  +S     S  PS         LT  D   TLL  S   E
Sbjct: 108 RGSKAKLNFPENVGTQTIQRNSHFLQNSMQPS---------LTYIDQCPTLLSYSRCME 157

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 65/96 (67%), Gaps = 8/96 (8%)

Query: 155 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPEN 214
           +YRGVR+RPWG++AAEIRDP K  RVWLGTFDTAE+AARAYD AA  FRG KAK NFP  
Sbjct: 24  RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTF 83

Query: 215 VKL--------VAISSSSSSSSPSPSPSTNANPMAT 242
           ++L         A S S SS+    SP T   P AT
Sbjct: 84  LELSDQKVPTGFARSPSQSSTLDCASPPTLVVPSAT 119

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 61/84 (72%), Gaps = 4/84 (4%)

Query: 134 QATARYEYSSNEKSIVPEPRRK----YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAE 189
           Q   + E    E++  P  RRK    YRG+R+RPWGKWAAEIRDP K  RVWLGTF+TAE
Sbjct: 53  QVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAE 112

Query: 190 DAARAYDEAALRFRGNKAKLNFPE 213
           +AA AYD AA + RG+KAKLNFP+
Sbjct: 113 EAAMAYDVAAKQIRGDKAKLNFPD 136

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 55/70 (78%)

Query: 143 SNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRF 202
           S E+    E +  YRG+RQRPWGKWAAEIRDP K  RVWLGTF TA++AARAYD AA++ 
Sbjct: 37  SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKI 96

Query: 203 RGNKAKLNFP 212
           RG KAKLNFP
Sbjct: 97  RGRKAKLNFP 106

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY29|EF115_ARATH Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 74/98 (75%), Gaps = 5/98 (5%)

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           +R YRGVRQRPWGKWAAEIRDP KAARVWLGTF+TAE AA AYD AAL+F+G+KAKLNFP
Sbjct: 89  KRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148

Query: 213 ENVKLVAISSSSSSSSPSPSPSTN----ANPMATQLTV 246
           E  +L A ++S+++  P+   S N    +NP     T+
Sbjct: 149 ERAQL-ASNTSTTTGPPNYYSSNNQIYYSNPQTNPQTI 185

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 52/61 (85%)

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           + ++RG+RQRPWGKWAAEIRDP K  RVWLGTF++AE+AARAYD  A R RG KAK+NFP
Sbjct: 117 KNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176

Query: 213 E 213
           E
Sbjct: 177 E 177

Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
255584052	373	DNA binding protein, putative [Ricinus c	0.828	0.584	0.492	6e-43
449448584	338	PREDICTED: uncharacterized protein LOC10	0.741	0.576	0.480	3e-42
357519745	313	Ethylene-responsive transcription factor	0.749	0.629	0.464	2e-39
385277266	381	ethylene-responsive transcription factor	0.730	0.503	0.471	4e-38
224083841	312	AP2/ERF domain-containing transcription	0.726	0.612	0.504	3e-37
356518730	322	PREDICTED: ethylene-responsive transcrip	0.733	0.599	0.493	2e-35
357464465	357	Ethylene-responsive transcription factor	0.756	0.557	0.459	7e-35
297794071	392	hypothetical protein ARALYDRAFT_496690 [	0.866	0.581	0.438	3e-34
15238232	391	ethylene-responsive transcription factor	0.866	0.583	0.44	2e-33
356509018	281	PREDICTED: ethylene-responsive transcrip	0.638	0.597	0.540	8e-33

>gi|255584052|ref|XP_002532770.1| DNA binding protein, putative [Ricinus communis] gi|223527480|gb|EEF29609.1| DNA binding protein, putative [Ricinus communis]

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 132/268 (49%), Positives = 155/268 (57%), Gaps = 50/268 (18%)

Query: 12  KKKEGDQHHEERLSEVDQGMNYQPLMQYSDDQRRRWKEREMSAMVSALKHVVAGDIDVVA 71
           +K++     E+    V++ +  QPLM  S   R    EREMSAMV+AL HV+ GD+    
Sbjct: 11  RKEKVTNSREDNGGGVEEWLYQQPLMTISGLSR----EREMSAMVTALTHVINGDVPPA- 65

Query: 72  SQPQQIQQHDNMNAITNVTSTAANSDSSSSYGITSGQKRAREMEG--------------G 117
                   HD+ N+   + S   N  SSSS    +G KR RE +G               
Sbjct: 66  --------HDSDNSFLTL-SNEGNCSSSSS----AGAKRGREDDGYEEFTKLSKQSFLDE 112

Query: 118 GVRATESSSTSTSTAM---QATARYEYSSNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDP 174
              ATE+S+ +TST +     T    Y  NE +   EP RKYRGVRQRPWGKWAAEIRDP
Sbjct: 113 FSHATENSNIATSTMIPPTHTTFTPIYEHNESTNREEPTRKYRGVRQRPWGKWAAEIRDP 172

Query: 175 FKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPS 234
           FKAARVWLGTFDTAE AARAYDEAALRFRG+KAKLNFPENVKL             PSPS
Sbjct: 173 FKAARVWLGTFDTAEAAARAYDEAALRFRGSKAKLNFPENVKL------------RPSPS 220

Query: 235 TNANPMATQLTVSDSPTTLLPISTSTEP 262
           +   PM TQL +SDS  TLL   TS EP
Sbjct: 221 S---PMTTQLIISDSSNTLLSDPTSAEP 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448584|ref|XP_004142046.1| PREDICTED: uncharacterized protein LOC101207587 [Cucumis sativus] gi|449497735|ref|XP_004160502.1| PREDICTED: uncharacterized LOC101207587 [Cucumis sativus]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 132/231 (57%), Gaps = 36/231 (15%)

Query: 48  KEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSSSYGITSG 107
           +E EMSAMVSAL HVVAGD       P +   +D+    ++V++ A  S      G   G
Sbjct: 18  REMEMSAMVSALTHVVAGDT------PDRDASYDSTWTSSSVSAPAETSALHGGGGYKRG 71

Query: 108 QKRAREMEGGGVRATESSST-------------STSTAMQATARYEYSSNEKSIVPEP-- 152
           +  A E  GG V A   SS               T +A    + YEY     ++  EP  
Sbjct: 72  RTLALE-NGGSVSAWSPSSVISGNSSNVVIIRPQTGSATVENSVYEYGGEITTMAEEPPA 130

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           RRKYRGVRQRPWGKWAAEIRDP+KAARVWLGTFDTAE AARAYDEAALRFRG+KAKLNFP
Sbjct: 131 RRKYRGVRQRPWGKWAAEIRDPYKAARVWLGTFDTAESAARAYDEAALRFRGSKAKLNFP 190

Query: 213 ENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTEPI 263
           ENV+L  + ++ S +              T  T S    TLL I T +EPI
Sbjct: 191 ENVRLRQLPTTESQT--------------THFTNSSPTNTLLAIPTHSEPI 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519745|ref|XP_003630161.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355524183|gb|AET04637.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 135/241 (56%), Gaps = 44/241 (18%)

Query: 48  KEREMSAMVSALKHVVAGDI--DVVASQPQQIQQHDNMNAITNV---TSTAANSDSSSSY 102
           +E EMSAMVSAL HV+ GD   D  +     + Q+ N NA            +S +S SY
Sbjct: 12  REGEMSAMVSALTHVICGDQNNDGGSDGYNVLNQNMNHNAFEGDGIDIKPFGSSSTSLSY 71

Query: 103 GITSGQKRAREMEGGGV------------RATESSSTSTSTAMQATAR-------YEYSS 143
           G  S  KR RE +GG              +  E SS  T+T    T R       YEY +
Sbjct: 72  GGNSALKRRRE-DGGFFDNSSSPIPQIKHQGVECSSNWTNTVTTTTGRSQVEEQIYEYRT 130

Query: 144 NEKSIVPE--PRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALR 201
           +  ++  E  P+RKYRGVRQRPWGKWAAEIRDPFKA RVWLGTF+TAEDAA+AYD+A+LR
Sbjct: 131 DNNNVKNEDQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQASLR 190

Query: 202 FRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTE 261
           FRGNKAKLNFPENVKL         S+P            T L +S S + LL     T+
Sbjct: 191 FRGNKAKLNFPENVKL-----KQQQSTP------------THLNISHSNSALLSHQPRTD 233

Query: 262 P 262
           P
Sbjct: 234 P 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385277266|gb|AFI57747.1| ethylene-responsive transcription factor ABR1 [Brassica juncea]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 134/227 (59%), Gaps = 35/227 (15%)

Query: 48  KEREMSAMVSALKHVVAGDIDV-----------VASQPQQIQQHDNMNAITNVTSTAANS 96
           +E+EMSA+VSAL HVVAG++              +S  Q+ ++             AAN+
Sbjct: 64  REKEMSAIVSALTHVVAGNVPTRQYGGEGTSNSSSSSGQKRRRELEEGGGGGKDVKAANT 123

Query: 97  DSSSSYGITSGQKRAREMEGGGVRATESSSTSTSTAMQATARYEYSSN-----EKSIVPE 151
            +   Y    G   +R  E     A+ + S S  T       YEY++      E S++  
Sbjct: 124 LTVDQY-FAGGSSSSRVGE-----ASSNMSGSVPT-------YEYTTTPNANTETSLLSG 170

Query: 152 --PRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKL 209
             P+R+YRGVRQRPWGKWAAEIRDPFKAARVWLGTFD AE AARAYDEAALRFRGNKAKL
Sbjct: 171 DGPQRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKL 230

Query: 210 NFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPI 256
           NFPENVKLV      +S++P+ S    A    TQL  S S +T+LP+
Sbjct: 231 NFPENVKLV----RPASTTPTLSVPQTAVQRPTQLRNSGSTSTILPV 273

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083841|ref|XP_002307142.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222856591|gb|EEE94138.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 133/228 (58%), Gaps = 37/228 (16%)

Query: 52  MSAMVSALKHVVAGDI-----DVVAS---QPQQIQQHDNMNAITNVTSTAANSDSSSSYG 103
           MS MV+AL HVVAG++     D ++      Q    H +++A          S+    +G
Sbjct: 1   MSVMVTALTHVVAGNVPADDSDCISEAFPNNQDNCAHGDLSAKREREEGGGGSEEYKRHG 60

Query: 104 ITSGQKRAREMEGGGVRATESSS------TSTSTAMQATARYEYSSNEKSIVPEPRRKYR 157
              G      + GG   A  +S       T  +T M  T  YEY+   +    EPRRKYR
Sbjct: 61  RAFGDDF---LHGGSSSAGRASGKSIITMTPAATRMAFTPVYEYNETCRD---EPRRKYR 114

Query: 158 GVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVKL 217
           GVRQRPWGKWAAEIRDPFKA RVWLGTFDTAE AARAYDEAALRFRGNKAKLNFPENVKL
Sbjct: 115 GVRQRPWGKWAAEIRDPFKACRVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVKL 174

Query: 218 VAISSSSSSSSPSPSPSTNANPMATQLTVSDSP--TTLLPISTSTEPI 263
                      P+P      NP+A QLTVSDSP  T LL + TSTE I
Sbjct: 175 ----------RPTP-----PNPIANQLTVSDSPSSTGLLSVPTSTEAI 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518730|ref|XP_003528031.1| PREDICTED: ethylene-responsive transcription factor ERF109-like [Glycine max]

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 139/231 (60%), Gaps = 38/231 (16%)

Query: 48  KEREMSAMVSALKHVVAGDIDVVASQPQQ---IQQHDNMNAITNVTSTAANSDSSSSYGI 104
           +EREMSAMVSAL HVV+G++ +          +  H   +    VT T  +S SSS+Y +
Sbjct: 15  REREMSAMVSALTHVVSGEVPITGDSSSSSSLVLHHQPHDDTVIVTPTMPSSSSSSTYVV 74

Query: 105 -TSGQKRAREMEGGGVRATESSSTSTSTAMQATARY----------EY-SSNEKSIVPEP 152
            TS  KR+RE +     +  S   S+S AM   A Y          EY ++ E +   E 
Sbjct: 75  GTSSLKRSRENDTY-TSSLFSHPPSSSPAMPTRAEYATREMGNSVYEYRTTTENATRDEG 133

Query: 153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           RRKYRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAE AARAYDEAALRFRGNKAKLNFP
Sbjct: 134 RRKYRGVRQRPWGKWAAEIRDPVEAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 193

Query: 213 ENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTSTEPI 263
           ENV L                         Q TVS+SP++L+ I+TST+P+
Sbjct: 194 ENVTL----------------------RQPQFTVSNSPSSLVSITTSTDPV 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464465|ref|XP_003602514.1| Ethylene-responsive transcription factor ERF110 [Medicago truncatula] gi|355491562|gb|AES72765.1| Ethylene-responsive transcription factor ERF110 [Medicago truncatula]

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/244 (45%), Positives = 146/244 (59%), Gaps = 45/244 (18%)

Query: 48  KEREMSAMVSALKHVVAGDI------DVV---ASQPQQIQQHDNMNAITNVTSTAANSDS 98
           ++REMSAM+SAL H+V+GD+      D+V   ++   ++    N+N   N++S +     
Sbjct: 36  RDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIEGRVAFATNIN--NNMSSPSTTQSL 93

Query: 99  SSSYGITSGQKRARE---------MEGGGVRATESSSTSTSTAMQATAR---------YE 140
           SS     S  KR RE           GG   A  ++   +S+  + T R         YE
Sbjct: 94  SSPSSSCSSLKRTREDDRFVGDFKFLGGSSPALPTTIAESSSINRTTTRITREMGNAVYE 153

Query: 141 YSSNEKSIVP-EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAA 199
           Y   E  +   E +RKYRGVRQRPWGKWAAEIRDPFKAARVWLGTF+TAE AARAYDEAA
Sbjct: 154 YKRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAA 213

Query: 200 LRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPISTS 259
           LRFRGNKAKLNFPENV L          +P P+ +T      TQ  VS+SP++++ I+TS
Sbjct: 214 LRFRGNKAKLNFPENVTL---------RNPPPATTT------TQWNVSNSPSSIVSITTS 258

Query: 260 TEPI 263
           T+P+
Sbjct: 259 TDPV 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794071|ref|XP_002864920.1| hypothetical protein ARALYDRAFT_496690 [Arabidopsis lyrata subsp. lyrata] gi|297310755|gb|EFH41179.1| hypothetical protein ARALYDRAFT_496690 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/301 (43%), Positives = 160/301 (53%), Gaps = 73/301 (24%)

Query: 4   VANQRRD-KKKKEGDQHHEER-LSEVDQGMNYQPLMQYSDDQRRRW-------------- 47
           VANQ  +  KK E  +  + R LSE+DQ + +       DD  R                
Sbjct: 6   VANQEDNVGKKAESTRDDDHRTLSEIDQWLYF---YAAEDDHLRHNFATQPPPPSSSSSS 62

Query: 48  -------KEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSS 100
                  +E EMSA+VSAL HVVAG++      PQ  Q                + + +S
Sbjct: 63  SLMSGFNREMEMSAIVSALTHVVAGNV------PQHQQ-----------GGGEGSGEGTS 105

Query: 101 SYGITSGQKRAREMEGGGVRATESSSTST-----STAMQATARYEYSSNEKSIVP----- 150
           +   +SGQKR R++E GG +A ++++T T     S     +   E SSN     P     
Sbjct: 106 NSSSSSGQKRRRDVEEGGGKAVKAANTLTVDQYFSGGSSTSKVREASSNMSGPGPTYEYT 165

Query: 151 ---------------EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAY 195
                          +PRR+YRGVRQRPWGKWAAEIRDPFKAARVWLGTFD AE AARAY
Sbjct: 166 TTATANSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAY 225

Query: 196 DEAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLP 255
           DEAALRFRGNKAKLNFPENVKLV  +S+ +     P P T A    TQL  S S TTLLP
Sbjct: 226 DEAALRFRGNKAKLNFPENVKLVRPASTEA----QPVPQTAAQ-RPTQLRNSGSTTTLLP 280

Query: 256 I 256
           I
Sbjct: 281 I 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238232|ref|NP_201280.1| ethylene-responsive transcription factor ABR1 [Arabidopsis thaliana] gi|75262440|sp|Q9FGF8.1|ABR1_ARATH RecName: Full=Ethylene-responsive transcription factor ABR1; AltName: Full=Protein ABA REPRESSOR 1 gi|10177206|dbj|BAB10308.1| unnamed protein product [Arabidopsis thaliana] gi|22655286|gb|AAM98233.1| putative protein [Arabidopsis thaliana] gi|30725634|gb|AAP37839.1| At5g64750 [Arabidopsis thaliana] gi|332010563|gb|AED97946.1| ethylene-responsive transcription factor ABR1 [Arabidopsis thaliana]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 158/300 (52%), Gaps = 72/300 (24%)

Query: 4   VANQRRD-KKKKEGDQHHEER-LSEVDQGMNYQPLMQYSDDQRRRW-------------- 47
           VANQ  +  KK E  +  + R LSE+DQ +    L    DD  R                
Sbjct: 6   VANQEDNVGKKAESIRDDDHRTLSEIDQWLY---LFAAEDDHHRHSFPTQQPPPSSSSSS 62

Query: 48  ------KEREMSAMVSALKHVVAGDIDVVASQPQQIQQHDNMNAITNVTSTAANSDSSSS 101
                 +E EMSA+VSAL HVVAG++      PQ  Q                + + +S+
Sbjct: 63  LISGFSREMEMSAIVSALTHVVAGNV------PQHQQ-----------GGGEGSGEGTSN 105

Query: 102 YGITSGQKRAREMEGGGVRATESSSTST-----STAMQATARYEYSSNEKSIVP------ 150
              +SGQKR RE+E GG +A ++++T T     S     +   E SSN     P      
Sbjct: 106 SSSSSGQKRRREVEEGGAKAVKAANTLTVDQYFSGGSSTSKVREASSNMSGPGPTYEYTT 165

Query: 151 --------------EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYD 196
                         +PRR+YRGVRQRPWGKWAAEIRDPFKAARVWLGTFD AE AARAYD
Sbjct: 166 TATASSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYD 225

Query: 197 EAALRFRGNKAKLNFPENVKLVAISSSSSSSSPSPSPSTNANPMATQLTVSDSPTTLLPI 256
           EAALRFRGNKAKLNFPENVKLV  +S+ +     P   T A    TQ   S S TTLLPI
Sbjct: 226 EAALRFRGNKAKLNFPENVKLVRPASTEA----QPVHQTAAQ-RPTQSRNSGSTTTLLPI 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509018|ref|XP_003523249.1| PREDICTED: ethylene-responsive transcription factor ERF109-like [Glycine max]

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 122/183 (66%), Gaps = 15/183 (8%)

Query: 48  KEREMSAMVSALKHVVAGDIDVV-ASQPQQIQQHDNMNAITNVTSTAANSDSSSSYGI-T 105
           +EREMSAMVSAL HVV+G++    +S     Q HD+ +A+T   +  + +  SS+Y + T
Sbjct: 17  REREMSAMVSALTHVVSGEVPTGDSSSVLHHQPHDD-DAVTVKPNMPSTTPFSSTYVVAT 75

Query: 106 SGQKRAREMEG---------GGVRATESSSTSTSTAMQATARYEYSS--NEKSIVPEPRR 154
           S  KR+R+ +              A  +S+  + + M   A YEY +   E     E RR
Sbjct: 76  SSLKRSRQHDTYTPSFSHPPSSFPAMPTSAECSKSGM-GNAVYEYRTRGTENVKKEEGRR 134

Query: 155 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPEN 214
           KYRGVRQRPWGKWAAEIRDPFKAARVWLGTF+TAE AARAYDEAALRFRG+KAKLNFPEN
Sbjct: 135 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNFPEN 194

Query: 215 VKL 217
           V L
Sbjct: 195 VTL 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2176095	391	ABR1 "ABA REPRESSOR1" [Arabido	0.304	0.204	0.678	1.4e-31
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.258	0.309	0.691	8.2e-26
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.269	0.369	0.676	1.9e-24
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.247	0.262	0.692	3e-24
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.254	0.254	0.641	1.3e-23
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.250	0.311	0.671	1.3e-20
TAIR|locus:2116224	268	RRTF1 "redox responsive transc	0.216	0.212	0.631	1.4e-20
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.273	0.201	0.561	8.4e-18
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.262	0.182	0.579	1.5e-17
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.266	0.409	0.557	3.2e-17

TAIR|locus:2176095 ABR1 "ABA REPRESSOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 59/87 (67%), Positives = 63/87 (72%)

Query:   139 YEYS-----SNEKSIVP--EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXX 191
             YEY+     S+E S     +PRR+YRGVRQRPWGKWAAEIRDPFKAARVWLGTFD     
Sbjct:   161 YEYTTTATASSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESA 220

Query:   192 XXXXXXXXLRFRGNKAKLNFPENVKLV 218
                     LRFRGNKAKLNFPENVKLV
Sbjct:   221 ARAYDEAALRFRGNKAKLNFPENVKLV 247

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 47/68 (69%), Positives = 54/68 (79%)

Query:   151 EPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLN 210
             E +R+YRGVRQRPWGKWAAEIRDP +AARVWLGTFDT            LRFRGNKAKLN
Sbjct:    72 EKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLN 131

Query:   211 FPENVKLV 218
             FPE+V+++
Sbjct:   132 FPEDVRIL 139

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 48/71 (67%), Positives = 52/71 (73%)

Query:   145 EKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRG 204
             E S+  E  +KYRGVRQRPWGKWAAEIRDP KA RVWLGTF+T            LRFRG
Sbjct:    50 ESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRG 109

Query:   205 NKAKLNFPENV 215
             +KAKLNFPENV
Sbjct:   110 SKAKLNFPENV 120

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 45/65 (69%), Positives = 50/65 (76%)

Query:   153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLNFP 212
             RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+T            L+F+G+KAKLNFP
Sbjct:    87 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146

Query:   213 ENVKL 217
             E V+L
Sbjct:   147 ERVQL 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 43/67 (64%), Positives = 50/67 (74%)

Query:   153 RRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLNFP 212
             +R YRGVRQRPWGKWAAEIRDP KAARVWLGTF+T            L+F+G+KAKLNFP
Sbjct:    89 KRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148

Query:   213 ENVKLVA 219
             E  +L +
Sbjct:   149 ERAQLAS 155

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/67 (67%), Positives = 51/67 (76%)

Query:   151 EPRRK-YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKL 209
             +PRR+ YRGVRQRPWGKWAAEIRDP KAARVWLGTF+T            L+F+G KAKL
Sbjct:    33 QPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKL 92

Query:   210 NFPENVK 216
             NFPE V+
Sbjct:    93 NFPERVQ 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2116224 RRTF1 "redox responsive transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 36/57 (63%), Positives = 41/57 (71%)

Query:   156 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLNFP 212
             YRGVRQRPWGK+AAEIRDP +A RVWLGTF+T            + FRG +AKLNFP
Sbjct:   136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query:   145 EKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRG 204
             EKS   + + +YRG+RQRPWGKWAAEIRDP + AR+WLGTF T             R RG
Sbjct:   114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRG 173

Query:   205 NKAKLNFPE-NVK 216
             +KAK+NFPE N+K
Sbjct:   174 SKAKVNFPEENMK 186

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 40/69 (57%), Positives = 46/69 (66%)

Query:   145 EKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRFRG 204
             EKS   + + +YRG+RQRPWGKWAAEIRDP K +R WLGTFDT             R RG
Sbjct:   117 EKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRG 176

Query:   205 NKAKLNFPE 213
              KAK+NFPE
Sbjct:   177 TKAKVNFPE 185

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 39/70 (55%), Positives = 44/70 (62%)

Query:   143 SNEKSIVPEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTXXXXXXXXXXXXLRF 202
             S E+    E +  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T            ++ 
Sbjct:    37 SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKI 96

Query:   203 RGNKAKLNFP 212
             RG KAKLNFP
Sbjct:    97 RGRKAKLNFP 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__2506__AT5G64750.1 annotation not avaliable (392 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	8e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-34
pfam00847	53	pfam00847, AP2, AP2 domain	9e-16

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  121 bits (306), Expect = 8e-36
 Identities = 47/60 (78%), Positives = 51/60 (85%)

Query: 155 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPEN 214
           KYRGVRQRPWGKW AEIRDP K  RVWLGTFDTAE+AARAYD AA +FRG  A+LNFP +
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  117 bits (296), Expect = 2e-34
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 155 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPEN 214
           KYRGVRQRPWGKW AEIRDP    R+WLGTFDTAE+AARAYD AAL+ RG+ A LNFP++
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 69.2 bits (170), Expect = 9e-16
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 155 KYRGVRQRP-WGKWAAEIRDP--FKAARVWLGTFDTAEDAARAYDEAALRFRG 204
            Y+GVR    WG+W AEIRDP   K  R  LGTF T E+AARA   A L+ RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PHA00280	121	putative NHN endonuclease	99.46
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.13
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.29

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=6.5e-21  Score=137.97  Aligned_cols=61  Identities=74%  Similarity=1.319  Sum_probs=57.5

Q ss_pred             CCeeeeEECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 039390          154 RKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPEN  214 (263)
Q Consensus       154 S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~lNFP~~  214 (263)
                      |+|+||+++++|||+|+|+++..|+++|||+|+|+||||+|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998888899999999955599999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=5.9e-20  Score=134.63  Aligned_cols=62  Identities=76%  Similarity=1.350  Sum_probs=58.8

Q ss_pred             CeeeeEECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 039390          155 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENVK  216 (263)
Q Consensus       155 ~YRGVr~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~lNFP~~~~  216 (263)
                      +|+||+++++|||+|+|+++.+++.+|||+|+|+||||+|||.++++++|.++.+|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999888899999999999999999999999999999999999999999999999998654

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.5e-13  Score=113.89  Aligned_cols=59  Identities=14%  Similarity=0.216  Sum_probs=53.1

Q ss_pred             CCCCCCCCCeeeeE-ECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCC
Q 039390          147 SIVPEPRRKYRGVR-QRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFRGNKAK  208 (263)
Q Consensus       147 ~~~~~~tS~YRGVr-~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~  208 (263)
                      +..+.++|+|+||. .+..|||+|+|.+  +||+++||.|+++|+|+.||+ ++.+|+|++|.
T Consensus        60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         60 KTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            45678999999995 5567999999999  999999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.13  E-value=1.3e-10  Score=82.08  Aligned_cols=52  Identities=35%  Similarity=0.534  Sum_probs=44.8

Q ss_pred             CCeeeeE-ECCCCeEEEEEeCCCC---CeeEeccCCCCHHHHHHHHHHHHHhhcCC
Q 039390          154 RKYRGVR-QRPWGKWAAEIRDPFK---AARVWLGTFDTAEDAARAYDEAALRFRGN  205 (263)
Q Consensus       154 S~YRGVr-~r~~GKW~A~I~~p~~---gkri~LGtFdT~EEAArAYD~AAl~l~G~  205 (263)
                      |+|+||+ .+..++|+|+|+++..   +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899995 4557999999998422   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.29  E-value=6.3  Score=26.97  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             eEEEEEe--CCCCC--eeEeccCCCCHHHHHHHHHHHHHhhc
Q 039390          166 KWAAEIR--DPFKA--ARVWLGTFDTAEDAARAYDEAALRFR  203 (263)
Q Consensus       166 KW~A~I~--~p~~g--kri~LGtFdT~EEAArAYD~AAl~l~  203 (263)
                      +|...|.  ++..|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  44344  67889999999999999888766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-13
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-13

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLNFP 212
           + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+T             R RG++A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 213 ENV 215
             V
Sbjct: 64  LRV 66

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTXXXXXXXXXXXXLRFRGNKAKLNFP 212
           + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+T             R RG++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 213 ENV 215
             V
Sbjct: 61  LRV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-40

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  132 bits (333), Expect = 5e-40
 Identities = 47/63 (74%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAEDAA AYD AA R RG++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 213 ENV 215
             V
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.4

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=8e-25  Score=160.72  Aligned_cols=62  Identities=76%  Similarity=1.257  Sum_probs=58.1

Q ss_pred             CCeeeeEECCCCeEEEEEeCCCC-CeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 039390          154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENV  215 (263)
Q Consensus       154 S~YRGVr~r~~GKW~A~I~~p~~-gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~lNFP~~~  215 (263)
                      .+||||++++||||+|+|++|.+ |+++|||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            36999998889999999999874 799999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.40  E-value=0.21  Score=37.97  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             CCCCCeeee-EECCCCeEEEEEeCCCCCeeE
Q 039390          151 EPRRKYRGV-RQRPWGKWAAEIRDPFKAARV  180 (263)
Q Consensus       151 ~~tS~YRGV-r~r~~GKW~A~I~~p~~gkri  180 (263)
                      ...|+|+|| |..+.+.|.|.-.+  +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            467999999 56668999999998  66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (287), Expect = 1e-33
 Identities = 47/63 (74%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFP 212
           + YRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAEDAA AYD AA R RG++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 213 ENV 215
             V
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=8.1e-25  Score=159.61  Aligned_cols=61  Identities=75%  Similarity=1.250  Sum_probs=56.6

Q ss_pred             CeeeeEECCCCeEEEEEeCCC-CCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 039390          155 KYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENV  215 (263)
Q Consensus       155 ~YRGVr~r~~GKW~A~I~~p~-~gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~lNFP~~~  215 (263)
                      +||||+++++|||+|+|++|. +++++|||+|+|+||||+|||.|+++++|.++.+|||..+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            599999888999999999875 5789999999999999999999999999999999999753